assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004193895.1_ASM419389v1	CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	1	421338-421438	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|128aa|up_8|CP020959.1_413944_414328_-,NA|98aa|up_6|CP020959.1_415281_415575_-,NA|34aa|up_1|CP020959.1_420562_420664_+,NA|86aa|up_0|CP020959.1_420871_421129_-,NA|221aa|down_1|CP020959.1_422528_423191_-,NA|179aa|down_7|CP020959.1_429282_429819_-	NA|194aa|up_9|CP020959.1_413297_413879_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|CP020959.1_413944_414328_-	NA	NA|209aa|up_7|CP020959.1_414582_415209_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_6|CP020959.1_415281_415575_-	NA	NA|508aa|up_5|CP020959.1_415653_417177_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|CP020959.1_417192_417762_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|CP020959.1_418253_419009_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|CP020959.1_419089_420478_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_1|CP020959.1_420562_420664_+	NA	NA|86aa|up_0|CP020959.1_420871_421129_-	NA	NA|319aa|down_0|CP020959.1_421454_422411_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|CP020959.1_422528_423191_-	NA	NA|136aa|down_2|CP020959.1_423333_423741_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|CP020959.1_424253_424832_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|CP020959.1_424831_426100_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|CP020959.1_426137_427604_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|CP020959.1_427628_429170_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|CP020959.1_429282_429819_-	NA	NA|235aa|down_8|CP020959.1_430211_430916_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|CP020959.1_431314_431587_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_004193895.1_ASM419389v1	CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	2	661086-661178	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_4|CP020959.1_657569_657677_+,NA|117aa|up_1|CP020959.1_659788_660139_-,NA|169aa|down_4|CP020959.1_664925_665432_+,NA|60aa|down_5|CP020959.1_665593_665773_+,NA|179aa|down_6|CP020959.1_665772_666309_+	NA|179aa|up_9|CP020959.1_652920_653457_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_8|CP020959.1_653625_654102_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_7|CP020959.1_654141_655437_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_6|CP020959.1_655464_655986_+	pfam08741, YwhD, YwhD family	NA|337aa|up_5|CP020959.1_656484_657495_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_4|CP020959.1_657569_657677_+	NA	NA|128aa|up_3|CP020959.1_657802_658186_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_2|CP020959.1_658182_659844_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|117aa|up_1|CP020959.1_659788_660139_-	NA	NA|212aa|up_0|CP020959.1_660232_660868_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|CP020959.1_661306_662134_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|CP020959.1_662281_663232_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|CP020959.1_663286_664006_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|CP020959.1_663989_664790_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|CP020959.1_664925_665432_+	NA	NA|60aa|down_5|CP020959.1_665593_665773_+	NA	NA|179aa|down_6|CP020959.1_665772_666309_+	NA	NA|263aa|down_7|CP020959.1_666477_667266_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_8|CP020959.1_667516_667891_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_9|CP020959.1_668838_669768_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_004193895.1_ASM419389v1	CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	3	777088-777170	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|69aa|up_9|CP020959.1_763688_763895_+,NA|34aa|down_1|CP020959.1_778626_778728_+,NA|82aa|down_3|CP020959.1_780376_780622_-,NA|89aa|down_6|CP020959.1_782422_782689_+	NA|69aa|up_9|CP020959.1_763688_763895_+	NA	NA|237aa|up_8|CP020959.1_763982_764693_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|CP020959.1_764676_765681_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|CP020959.1_766154_768095_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|CP020959.1_768365_770249_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|CP020959.1_770260_772042_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|CP020959.1_772263_773241_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|CP020959.1_773233_774748_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|CP020959.1_774987_776046_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|CP020959.1_776396_776939_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|CP020959.1_777618_778536_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|CP020959.1_778626_778728_+	NA	NA|502aa|down_2|CP020959.1_778805_780311_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|82aa|down_3|CP020959.1_780376_780622_-	NA	NA|167aa|down_4|CP020959.1_780651_781152_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_5|CP020959.1_781171_782038_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|89aa|down_6|CP020959.1_782422_782689_+	NA	NA|133aa|down_7|CP020959.1_782838_783237_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_8|CP020959.1_783199_785305_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_9|CP020959.1_785422_786394_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit
GCA_004193895.1_ASM419389v1	CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	5	880344-880425	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	880368-880401|880368-880401	CP020959.1_1355391-1355358|CP020959.1_1444542-1444575	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|CP020959.1_879246_879360_+,NA|38aa|down_0|CP020959.1_880658_880772_+	NA|206aa|up_9|CP020959.1_874101_874719_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|CP020959.1_874873_875368_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|CP020959.1_875766_876189_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|CP020959.1_876336_877053_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|CP020959.1_877135_877675_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|CP020959.1_877824_878145_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|CP020959.1_878288_878645_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|CP020959.1_878802_879183_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|CP020959.1_879246_879360_+	NA	NA|293aa|up_0|CP020959.1_879361_880240_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_0|CP020959.1_880658_880772_+	NA	NA|129aa|down_1|CP020959.1_880981_881368_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_2|CP020959.1_881360_881657_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_3|CP020959.1_881906_882932_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_4|CP020959.1_882924_883620_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_5|CP020959.1_883637_884459_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_6|CP020959.1_884812_885007_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_7|CP020959.1_885239_886091_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_8|CP020959.1_886418_887180_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_9|CP020959.1_887277_888585_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCA_004193895.1_ASM419389v1	CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	6	929188-929470	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	929218-929243|929218-929243|929218-929243|929218-929243|929332-929357|929332-929357	CP020959.1_929162-929187|CP020959.1_786560-786585|CP020959.1_2715218-2715193|CP020959.1_2715274-2715249|CP020959.1_823704-823679|CP020959.1_382672-382697	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|CP020959.1_918076_919573_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|CP020959.1_919565_919895_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|CP020959.1_919906_920335_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|CP020959.1_920327_922733_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|CP020959.1_922863_923247_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|CP020959.1_923310_923904_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|CP020959.1_924319_924697_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|CP020959.1_925058_926186_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|CP020959.1_926493_927684_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|CP020959.1_927792_929037_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|CP020959.1_929539_930469_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|CP020959.1_930710_932090_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|CP020959.1_932079_933285_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|CP020959.1_933635_934967_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|CP020959.1_935291_935867_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|CP020959.1_935871_936396_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|CP020959.1_936411_936987_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|CP020959.1_937146_940623_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|CP020959.1_940623_944277_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|CP020959.1_944442_945345_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_004193895.1_ASM419389v1	CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	8	1147198-1147283	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	5	1147228-1147253|1147228-1147253|1147228-1147253|1147228-1147253|1147228-1147253	CP020959.1_2715218-2715193|CP020959.1_786616-786641|CP020959.1_2715274-2715249|CP020959.1_786560-786585|CP020959.1_786672-786697	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|169aa|up_9|CP020959.1_1141006_1141513_+,NA|72aa|up_6|CP020959.1_1143115_1143331_+,NA|62aa|up_5|CP020959.1_1143481_1143667_-,NA|73aa|up_4|CP020959.1_1143876_1144095_-,NA|78aa|up_3|CP020959.1_1144288_1144522_-,NA|49aa|up_1|CP020959.1_1146630_1146777_+,NA|75aa|up_0|CP020959.1_1146733_1146958_+,NA|76aa|down_6|CP020959.1_1154257_1154485_+	NA|169aa|up_9|CP020959.1_1141006_1141513_+	NA	NA|166aa|up_8|CP020959.1_1141771_1142269_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_7|CP020959.1_1142422_1142773_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|72aa|up_6|CP020959.1_1143115_1143331_+	NA	NA|62aa|up_5|CP020959.1_1143481_1143667_-	NA	NA|73aa|up_4|CP020959.1_1143876_1144095_-	NA	NA|78aa|up_3|CP020959.1_1144288_1144522_-	NA	NA|320aa|up_2|CP020959.1_1144998_1145958_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|CP020959.1_1146630_1146777_+	NA	NA|75aa|up_0|CP020959.1_1146733_1146958_+	NA	NA|239aa|down_0|CP020959.1_1147458_1148175_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|CP020959.1_1148282_1149008_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|CP020959.1_1149102_1149828_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|CP020959.1_1150265_1151267_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|CP020959.1_1151289_1152222_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|502aa|down_5|CP020959.1_1152444_1153950_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|CP020959.1_1154257_1154485_+	NA	NA|316aa|down_7|CP020959.1_1154789_1155737_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|CP020959.1_1155985_1156174_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|CP020959.1_1157085_1157220_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCA_004193895.1_ASM419389v1	CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	9	1801460-1801662	1,7,3	PILER-CR,CRISPRCasFinder,CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGCAAGTTGGGGTAAGGGCCCCAACACAGA,TGCAAGTTGGGGTAAGGGCCCCAACACAGA,TGCAAGTTGGGGTAAGGGCCCCAACACAGANNN	30,30,33	2	26	1801549-1801588|1801549-1801588|1801549-1801588|1801549-1801588|1801549-1801588|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576|1801549-1801576	CP020959.1_818197-818158|CP020959.1_818252-818213|CP020959.1_2715312-2715273|CP020959.1_301442-301481|CP020959.1_382803-382842|CP020959.1_1801432-1801459|CP020959.1_115310-115337|CP020959.1_818197-818170|CP020959.1_818252-818225|CP020959.1_823801-823774|CP020959.1_823859-823832|CP020959.1_880441-880414|CP020959.1_948888-948861|CP020959.1_1072800-1072773|CP020959.1_1147133-1147160|CP020959.1_1355259-1355286|CP020959.1_1444674-1444647|CP020959.1_1622913-1622886|CP020959.1_1962476-1962449|CP020959.1_1971943-1971916|CP020959.1_2468857-2468884|CP020959.1_2715312-2715285|CP020959.1_382803-382830|CP020959.1_382858-382885|CP020959.1_831066-831039|CP020959.1_1656877-1656850	NA:NA:NA	3,1,3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|199aa|up_9|CP020959.1_1792027_1792624_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|CP020959.1_1792652_1793510_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|CP020959.1_1793609_1793921_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|CP020959.1_1793985_1795062_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|CP020959.1_1795148_1795460_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|CP020959.1_1795584_1796427_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|CP020959.1_1796896_1797541_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|CP020959.1_1797555_1798347_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|CP020959.1_1798896_1799745_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|CP020959.1_1799748_1801158_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|CP020959.1_1801965_1802388_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|CP020959.1_1802404_1803100_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|CP020959.1_1803096_1804758_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|CP020959.1_1805164_1806433_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|CP020959.1_1806549_1813110_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|CP020959.1_1813435_1813747_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|CP020959.1_1813768_1816186_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|CP020959.1_1816473_1817655_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|CP020959.1_1817764_1818718_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|CP020959.1_1818714_1819278_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCA_004193895.1_ASM419389v1	CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	10	1961073-1961151	8	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	AATTTCTCTATGTTGGGGCCCCG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|CP020959.1_1955277_1955553_+,NA|129aa|up_1|CP020959.1_1959538_1959925_-,NA|138aa|down_1|CP020959.1_1962906_1963320_-,NA|37aa|down_2|CP020959.1_1963348_1963459_-,NA|31aa|down_6|CP020959.1_1966464_1966557_-	NA|419aa|up_9|CP020959.1_1953200_1954457_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|CP020959.1_1954459_1954660_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|CP020959.1_1954806_1955271_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|CP020959.1_1955277_1955553_+	NA	NA|406aa|up_5|CP020959.1_1955830_1957048_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|CP020959.1_1957163_1957793_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|CP020959.1_1957782_1958826_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|CP020959.1_1958822_1959524_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|CP020959.1_1959538_1959925_-	NA	NA|253aa|up_0|CP020959.1_1960141_1960900_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|CP020959.1_1961371_1962358_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|CP020959.1_1962906_1963320_-	NA	NA|37aa|down_2|CP020959.1_1963348_1963459_-	NA	NA|244aa|down_3|CP020959.1_1963544_1964276_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|CP020959.1_1964277_1965591_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|CP020959.1_1965882_1966383_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|CP020959.1_1966464_1966557_-	NA	DEDDh|185aa|down_7|CP020959.1_1966771_1967326_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|CP020959.1_1967393_1968464_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|CP020959.1_1968710_1969241_-	pfam11667, DUF3267, Putative zincin peptidase
GCA_004193895.1_ASM419389v1	CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	11	2153113-2153263	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|CP020959.1_2147984_2148215_-,NA|364aa|up_0|CP020959.1_2152003_2153095_+,NA|35aa|down_0|CP020959.1_2153594_2153699_-,NA|31aa|down_3|CP020959.1_2155810_2155903_+	NA|237aa|up_9|CP020959.1_2143594_2144305_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP020959.1_2144425_2144869_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP020959.1_2145068_2145482_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP020959.1_2145939_2147313_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP020959.1_2147984_2148215_-	NA	NA|313aa|up_4|CP020959.1_2148245_2149184_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP020959.1_2149618_2150284_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP020959.1_2150435_2150756_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|CP020959.1_2150757_2151738_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP020959.1_2152003_2153095_+	NA	NA|35aa|down_0|CP020959.1_2153594_2153699_-	NA	NA|68aa|down_1|CP020959.1_2154123_2154327_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|379aa|down_2|CP020959.1_2154385_2155522_-	pfam02037, SAP, SAP domain	NA|31aa|down_3|CP020959.1_2155810_2155903_+	NA	NA|286aa|down_4|CP020959.1_2156607_2157465_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|CP020959.1_2157532_2158315_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|CP020959.1_2158546_2160352_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|CP020959.1_2161032_2162571_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|CP020959.1_2162605_2164738_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|CP020959.1_2164749_2165184_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCA_004193895.1_ASM419389v1	CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	12	2277273-2277466	4	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2277296-2277328|2277296-2277328|2277296-2277328|2277296-2277328|2277296-2277328|2277352-2277387|2277352-2277387|2277352-2277387|2277352-2277387|2277411-2277443|2277411-2277443|2277411-2277443|2277411-2277443	CP020959.1_823659-823691|CP020959.1_1147217-1147185|CP020959.1_1355345-1355313|CP020959.1_1444588-1444620|CP020959.1_2550186-2550218|CP020959.1_1147164-1147129|CP020959.1_1801463-1801428|CP020959.1_1622882-1622917|CP020959.1_1971912-1971947|CP020959.1_823659-823691|CP020959.1_1147217-1147185|CP020959.1_1355345-1355313|CP020959.1_2550186-2550218	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|CP020959.1_2267800_2267965_+,NA|106aa|up_8|CP020959.1_2268209_2268527_+,NA|84aa|up_5|CP020959.1_2273651_2273903_+,NA|57aa|up_0|CP020959.1_2277042_2277213_+,NA	NA|55aa|up_9|CP020959.1_2267800_2267965_+	NA	NA|106aa|up_8|CP020959.1_2268209_2268527_+	NA	NA|1056aa|up_7|CP020959.1_2268713_2271881_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|CP020959.1_2271997_2273263_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|CP020959.1_2273651_2273903_+	NA	NA|255aa|up_4|CP020959.1_2273894_2274659_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|CP020959.1_2274820_2275261_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|CP020959.1_2275253_2276465_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|CP020959.1_2276566_2276917_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|CP020959.1_2277042_2277213_+	NA	NA|341aa|down_0|CP020959.1_2277607_2278630_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|CP020959.1_2278649_2279249_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|CP020959.1_2279255_2279489_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|CP020959.1_2279494_2279941_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|CP020959.1_2279954_2280440_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|CP020959.1_2280436_2281696_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|CP020959.1_2281758_2282253_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|CP020959.1_2282254_2282761_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|CP020959.1_2282791_2283796_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|CP020959.1_2283965_2284571_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
