The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP035897	Streptococcus pneumoniae strain EF3030 chromosome, complete genome	2101621	42154	53792	2101621		Synechococcus_phage(33.33%)	8	NA	NA
QBF68095.1|42154_44308_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.0	3.6e-45
QBF68096.1|44320_45670_+	HlyD family secretion protein	NA	NA	NA	NA	NA
QBF68097.1|45797_46547_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.9e-41
QBF69930.1|46548_46692_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
QBF68098.1|46748_50474_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.8	2.1e-37
QBF68099.1|50566_52009_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	2.8e-54
QBF68100.1|52227_53250_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.6	8.1e-64
QBF68101.1|53246_53792_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
>prophage 2
CP035897	Streptococcus pneumoniae strain EF3030 chromosome, complete genome	2101621	105180	128960	2101621	tRNA,bacteriocin,holin	Streptococcus_phage(66.67%)	29	NA	NA
QBF68152.1|105180_105468_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
QBF68153.1|105519_107628_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
QBF68154.1|107624_108266_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
QBF68155.1|108472_109279_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
QBF68156.1|110003_110867_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QBF68157.1|111332_111671_+	peptidase C39	NA	NA	NA	NA	NA
QBF68158.1|111648_112020_+|bacteriocin	SPH_0218 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
QBF68159.1|112027_112240_+	hypothetical protein	NA	NA	NA	NA	NA
QBF69932.1|112719_112965_+	hypothetical protein	NA	NA	NA	NA	NA
QBF68160.1|113121_114180_+	hypothetical protein	NA	NA	NA	NA	NA
QBF68161.1|114494_115472_+	hypothetical protein	NA	NA	NA	NA	NA
QBF68162.1|115452_115635_+	hypothetical protein	NA	NA	NA	NA	NA
QBF68163.1|115829_116204_+|bacteriocin	SPH_0224 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
QBF68164.1|116210_116393_+	hypothetical protein	NA	NA	NA	NA	NA
QBF68165.1|116411_117314_+	hypothetical protein	NA	NA	NA	NA	NA
QBF68166.1|117336_117702_+	argininosuccinate lyase	NA	NA	NA	NA	NA
QBF68167.1|117668_118427_+	hypothetical protein	NA	NA	NA	NA	NA
QBF68168.1|118904_119111_+	hypothetical protein	NA	NA	NA	NA	NA
QBF69933.1|119123_119402_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	55.9	2.3e-13
QBF68169.1|119386_119665_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	53.8	9.3e-23
QBF68170.1|119951_121682_+|holin	choline-binding protein	holin	NA	NA	NA	NA
QBF68171.1|122082_123204_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
QBF68172.1|123317_123800_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
QBF68173.1|123809_125723_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
QBF68174.1|126075_127755_-	ribonuclease J	NA	NA	NA	NA	NA
QBF68175.1|127756_127990_-	DUF1447 family protein	NA	NA	NA	NA	NA
QBF68176.1|128373_128595_+	hypothetical protein	NA	NA	NA	NA	NA
QBF68177.1|128616_128814_-	hypothetical protein	NA	NA	NA	NA	NA
QBF68178.1|128807_128960_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
>prophage 3
CP035897	Streptococcus pneumoniae strain EF3030 chromosome, complete genome	2101621	264905	321450	2101621	holin,integrase,protease,transposase	Streptococcus_phage(23.08%)	57	255624:255643	296665:296684
255624:255643	attL	GATAGAACTGACGAAGTCAG	NA	NA	NA	NA
QBF68315.1|264905_265616_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QBF68316.1|265739_266687_+	dihydropteroate synthase	NA	NA	NA	NA	NA
QBF68317.1|266688_268011_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
QBF68318.1|267991_268546_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	43.8	3.7e-39
QBF68319.1|268588_269401_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
QBF68320.1|269445_269763_-	GTP cyclohydrolase	NA	NA	NA	NA	NA
QBF68321.1|270119_270566_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
QBF68322.1|270585_270978_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
QBF68323.1|271239_271662_-|integrase	integrase	integrase	NA	NA	NA	NA
QBF68324.1|271808_271985_+	hypothetical protein	NA	NA	NA	NA	NA
QBF68325.1|272386_274600_+	alpha-xylosidase	NA	NA	NA	NA	NA
QBF68326.1|274821_275298_-	glutathione peroxidase	NA	NA	NA	NA	NA
QBF68327.1|275487_278724_+	LPXTG-anchored hyaluronate lyase	NA	NA	NA	NA	NA
QBF68328.1|279740_279848_-	PTS cellbiose transporter subunit IIC	NA	NA	NA	NA	NA
QBF68329.1|279871_280501_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
QBF68330.1|280510_281512_-	sugar kinase	NA	NA	NA	NA	NA
QBF68331.1|281542_282184_-	hypothetical protein	NA	NA	NA	NA	NA
QBF68332.1|282202_283018_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
QBF68333.1|283288_283723_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
QBF68334.1|283734_284925_+	glucuronyl hydrolase	NA	NA	NA	NA	NA
QBF68335.1|284935_285427_+	PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB	NA	NA	NA	NA	NA
QBF68336.1|285441_286221_+	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA	NA
QBF68337.1|286207_287026_+	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
QBF68338.1|287025_287319_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
QBF68339.1|287340_289242_+	alginate lyase family protein	NA	NA	NA	NA	NA
QBF68340.1|289235_290303_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
QBF68341.1|290412_290748_-	hypothetical protein	NA	NA	NA	NA	NA
QBF68342.1|290758_291001_-	hypothetical protein	NA	NA	NA	NA	NA
QBF68343.1|291011_291554_-	DUF3278 domain-containing protein	NA	NA	NA	NA	NA
QBF68344.1|291569_291764_-	transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	9.4e-06
QBF68345.1|291929_292880_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
QBF68346.1|292891_293209_+	cell division protein FtsL	NA	NA	NA	NA	NA
QBF68347.1|293212_295465_+	PASTA domain-containing protein	NA	NA	NA	NA	NA
QBF68348.1|295466_296447_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
QBF68349.1|296586_296775_+	hypothetical protein	NA	NA	NA	NA	NA
296665:296684	attR	GATAGAACTGACGAAGTCAG	NA	NA	NA	NA
QBF68350.1|297055_299161_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.6	5.8e-117
QBF68351.1|299456_299939_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
QBF68352.1|300033_301518_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
QBF68353.1|301670_303278_+	alpha-glucosidase	NA	NA	NA	NA	NA
QBF69940.1|303442_303610_+	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
QBF68354.1|304511_305966_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
QBF68355.1|306121_307567_+	LytR family transcriptional regulator	NA	A0A1X9I5X1	Streptococcus_phage	60.1	4.7e-134
QBF68356.1|307568_308300_+	tyrosine-protein phosphatase CpsB	NA	NA	NA	NA	NA
QBF68357.1|308308_309001_+	capsular polysaccharide biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	55.9	4.3e-61
QBF68358.1|309010_309694_+	polysaccharide biosynthesis tyrosine autokinase CpsD	NA	A0A1X9I5D6	Streptococcus_phage	60.9	5.0e-70
QBF68359.1|309709_311077_+	sugar transferase	NA	NA	NA	NA	NA
QBF68360.1|311080_311824_+	glycosyltransferase	NA	NA	NA	NA	NA
QBF68361.1|311820_312645_+|holin	lipopolysaccharide cholinephosphotransferase	holin	A0A1V0SD50	Indivirus	27.7	1.3e-06
QBF68362.1|312646_313525_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
QBF68363.1|313525_314863_+	oligosaccharide repeat unit polymerase	NA	NA	NA	NA	NA
QBF68364.1|314885_316307_+	hypothetical protein	NA	NA	NA	NA	NA
QBF68365.1|316370_317459_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	30.3	1.0e-27
QBF68366.1|317497_318367_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	62.8	2.0e-100
QBF68367.1|318367_318964_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	33.1	3.9e-10
QBF68368.1|318973_320023_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.5	8.3e-72
QBF68369.1|320088_320940_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.0	2.5e-26
QBF69941.1|321063_321450_+|transposase	transposase	transposase	A0A218MNE7	uncultured_virus	25.0	2.5e-05
>prophage 4
CP035897	Streptococcus pneumoniae strain EF3030 chromosome, complete genome	2101621	429937	476668	2101621	tRNA,integrase,bacteriocin	Bacillus_phage(25.0%)	41	426878:426914	479436:479472
426878:426914	attL	ACTAATACTCAATGAAAATCAAAGAGCAAACTAGGAA	NA	NA	NA	NA
QBF68464.1|429937_430441_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
QBF68465.1|430893_431457_+	ECF transporter S component	NA	NA	NA	NA	NA
QBF68466.1|431446_432097_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
QBF68467.1|432124_432514_+	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
QBF68468.1|432518_432968_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBF68469.1|433080_433683_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
QBF68470.1|434072_435680_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
QBF68471.1|436238_437870_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
QBF68472.1|443225_444422_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
QBF68473.1|444557_445085_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
QBF68474.1|445161_445518_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
QBF68475.1|445554_446901_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
QBF68476.1|446990_447110_-	glutamine synthetase	NA	NA	NA	NA	NA
QBF68477.1|447074_447224_+	cell envelope	NA	NA	NA	NA	NA
QBF68478.1|449028_449829_+|integrase	integrase	integrase	A0A0H4TI16	Erysipelothrix_phage	29.2	6.2e-19
QBF68479.1|452006_453470_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
QBF68480.1|453482_455816_-	DEAD/DEAH box helicase	NA	Q5YA94	Bacillus_phage	27.9	4.5e-25
QBF68481.1|456187_456388_+	hypothetical protein	NA	NA	NA	NA	NA
QBF68482.1|456494_456932_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
QBF68483.1|457095_458130_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
QBF68484.1|458156_458681_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
QBF68485.1|459160_460984_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	7.8e-134
QBF68486.1|462091_463228_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	32.0	1.5e-26
QBF69950.1|463549_463651_-|tRNA	lysyl-tRNA synthetase	tRNA	NA	NA	NA	NA
QBF68487.1|463950_464238_-	hypothetical protein	NA	NA	NA	NA	NA
QBF68488.1|464247_464658_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
QBF68489.1|464725_465457_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	9.0e-25
QBF68490.1|465453_466503_+	multidrug ABC transporter permease	NA	NA	NA	NA	NA
QBF68491.1|466670_467000_-	helicase BlpT	NA	NA	NA	NA	NA
QBF68492.1|467276_467615_+	response regulator transcription factor	NA	NA	NA	NA	NA
QBF68493.1|467619_468357_+	response regulator transcription factor	NA	NA	NA	NA	NA
QBF68494.1|468370_469711_+	sensor histidine kinase	NA	NA	NA	NA	NA
QBF68495.1|469755_469911_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
QBF68496.1|469967_471329_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
QBF68497.1|471339_473493_-	peptide cleavage/export ABC transporter BlpA	NA	W8CYL7	Bacillus_phage	27.9	6.3e-42
QBF68498.1|473773_474004_+|bacteriocin	bacteriocin-like peptide BlpU	bacteriocin	NA	NA	NA	NA
QBF68499.1|474006_474126_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
QBF68500.1|474422_474587_+	hypothetical protein	NA	NA	NA	NA	NA
QBF68501.1|474583_474988_+	immunity protein	NA	NA	NA	NA	NA
QBF68502.1|476194_476449_+|bacteriocin	two-peptide bacteriocin subunit BlpM	bacteriocin	NA	NA	NA	NA
QBF68503.1|476464_476668_+|bacteriocin	two-peptide bacteriocin subunit BlpN	bacteriocin	NA	NA	NA	NA
479436:479472	attR	ACTAATACTCAATGAAAATCAAAGAGCAAACTAGGAA	NA	NA	NA	NA
>prophage 5
CP035897	Streptococcus pneumoniae strain EF3030 chromosome, complete genome	2101621	789008	849000	2101621	bacteriocin,protease,tRNA,integrase,transposase	Streptococcus_phage(50.0%)	56	793379:793419	844689:844729
QBF68769.1|789008_790223_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
QBF68770.1|790357_791182_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBF68771.1|791955_793122_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
793379:793419	attL	TCAATGAAAATCAAAGAGCAAACTAGGAAGCTAGCCGCAGG	NA	NA	NA	NA
QBF68772.1|793629_795123_+	SAM-dependent DNA methyltransferase	NA	A0A2H4UVB0	Bodo_saltans_virus	31.8	3.0e-27
QBF68773.1|796314_796551_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
QBF68774.1|796547_796961_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
QBF68775.1|797078_798044_+|integrase	integrase	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	29.6	1.4e-33
QBF68776.1|798066_798648_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
QBF68777.1|798677_802028_+	DEAD/DEAH box helicase	NA	A0A2H4P9W3	Gordonia_phage	24.8	2.4e-11
QBF68778.1|802298_802499_+	hypothetical protein	NA	NA	NA	NA	NA
QBF68779.1|802615_803086_-	arginine repressor	NA	NA	NA	NA	NA
QBF68780.1|803102_805376_-	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
QBF68781.1|805695_808824_+	DNA polymerase III subunit alpha	NA	A0A291AWR1	Streptomyces_phage	32.8	6.9e-114
QBF68782.1|808906_809914_+	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA	NA
QBF68783.1|809972_811478_+	pyruvate kinase	NA	NA	NA	NA	NA
QBF68784.1|811752_812001_-|integrase	integrase	integrase	A0A1S5S8R9	Streptococcus_phage	52.1	1.7e-12
QBF68785.1|812548_812803_-	XRE family transcriptional regulator	NA	B3GVX0	Streptococcus_phage	61.2	3.3e-19
QBF68786.1|813238_814111_+	DUF4300 family protein	NA	NA	NA	NA	NA
QBF68787.1|814743_815055_+	hypothetical protein	NA	NA	NA	NA	NA
QBF68788.1|815058_815775_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBF68789.1|815903_816719_-	TIGR03943 family protein	NA	NA	NA	NA	NA
QBF68790.1|816715_817621_-	permease	NA	NA	NA	NA	NA
QBF68791.1|817621_817753_-	hypothetical protein	NA	NA	NA	NA	NA
QBF68792.1|818077_820207_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
QBF68793.1|820193_820643_+	SprT family protein	NA	NA	NA	NA	NA
QBF68794.1|820671_820974_+	PspC domain-containing protein	NA	NA	NA	NA	NA
QBF68795.1|821327_821519_-	hypothetical protein	NA	NA	NA	NA	NA
QBF68796.1|821946_822705_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.3	7.7e-27
QBF68797.1|822706_824695_+	ABC transporter permease	NA	NA	NA	NA	NA
QBF68798.1|824736_825378_-	VIT family protein	NA	NA	NA	NA	NA
QBF68799.1|825406_826402_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	36.0	2.4e-36
QBF68800.1|826634_826817_-	hypothetical protein	NA	NA	NA	NA	NA
QBF68801.1|827108_828584_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
QBF68802.1|828549_829266_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
QBF68803.1|829521_830382_+	polyamine aminopropyltransferase	NA	NA	NA	NA	NA
QBF68804.1|830378_831638_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
QBF68805.1|831637_832765_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
QBF68806.1|832761_833847_+	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	47.5	1.6e-89
QBF68807.1|833856_834732_+	N-carbamoylputrescine amidase	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	50.0	1.1e-77
QBF68808.1|834912_835722_-	HAD family hydrolase	NA	NA	NA	NA	NA
QBF68809.1|835993_836215_+|bacteriocin	SP_0924 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
QBF68810.1|836268_836940_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QBF68811.1|837181_838090_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
QBF68812.1|838086_838548_+	signal peptidase II	NA	NA	NA	NA	NA
QBF68813.1|838537_839425_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
QBF68814.1|839427_841311_+	MBL fold metallo-hydrolase	NA	Q332B9	Clostridium_botulinum_C_phage	22.9	1.2e-09
QBF68815.1|841390_842521_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.1e-114
QBF68816.1|842530_843793_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.5	2.5e-139
QBF68817.1|843796_844594_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.9	1.2e-59
QBF68818.1|844813_845452_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	67.6	6.4e-75
844689:844729	attR	CCTGCGGCTAGCTTCCTAGTTTGCTCTTTGATTTTCATTGA	NA	NA	NA	NA
QBF68819.1|845448_846339_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
QBF68820.1|846378_846696_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
QBF68821.1|846698_847568_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	76.1	2.7e-116
QBF68822.1|847794_848313_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
QBF68823.1|848421_848559_+	replication initiator domain protein A	NA	NA	NA	NA	NA
QBF68824.1|848565_849000_+	hypothetical protein	NA	A0A2P0VK56	Streptococcus_phage	40.0	4.6e-08
>prophage 6
CP035897	Streptococcus pneumoniae strain EF3030 chromosome, complete genome	2101621	1112625	1173356	2101621	tRNA,holin,protease,transposase	unidentified_phage(14.29%)	55	NA	NA
QBF69045.1|1112625_1112970_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
QBF69046.1|1112985_1113300_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
QBF69047.1|1113487_1114186_-	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
QBF69048.1|1114587_1114887_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
QBF69049.1|1115227_1116202_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
QBF69050.1|1116245_1117142_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
QBF69051.1|1117138_1117957_-	NAD kinase	NA	NA	NA	NA	NA
QBF69052.1|1117940_1118612_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
QBF69053.1|1118739_1119309_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
QBF69054.1|1119421_1120381_+	ribose-phosphate diphosphokinase	NA	A0A2K9L2G2	Tupanvirus	32.8	9.3e-38
QBF69055.1|1120390_1121506_+	cysteine desulfurase	NA	H7BUW1	unidentified_phage	36.8	1.0e-27
QBF69056.1|1121510_1121858_+	cysteine desulfurase	NA	NA	NA	NA	NA
QBF69057.1|1121829_1122081_+	DUF4649 family protein	NA	NA	NA	NA	NA
QBF69058.1|1122163_1122805_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
QBF69059.1|1122822_1123512_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA	NA
QBF69060.1|1123508_1124189_-	JAB domain-containing protein	NA	NA	NA	NA	NA
QBF69061.1|1124231_1126523_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.1	9.5e-129
QBF69062.1|1127479_1127674_-	galactose-6-phosphate isomerase	NA	NA	NA	NA	NA
QBF69063.1|1127898_1128759_-	methionyl aminopeptidase	NA	NA	NA	NA	NA
QBF69064.1|1128774_1130052_-	CBS domain-containing protein	NA	NA	NA	NA	NA
QBF69065.1|1130044_1130596_-	N-acetyltransferase	NA	NA	NA	NA	NA
QBF69066.1|1130611_1131871_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
QBF69067.1|1134450_1134609_-	hypothetical protein	NA	NA	NA	NA	NA
QBF69068.1|1134618_1135929_-	GTPase ObgE	NA	NA	NA	NA	NA
QBF69069.1|1135992_1136127_-	DUF4044 domain-containing protein	NA	NA	NA	NA	NA
QBF69070.1|1136185_1136362_-	PspC domain-containing protein	NA	NA	NA	NA	NA
QBF69071.1|1136392_1137718_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
QBF69967.1|1137733_1138750_-	glycosyltransferase	NA	NA	NA	NA	NA
QBF69072.1|1138891_1139221_-	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
QBF69073.1|1139234_1140344_-	RNA polymerase sigma factor RpoD	NA	F4YCU2	Synechococcus_phage	38.5	2.0e-36
QBF69074.1|1140346_1142107_-	DNA primase	NA	A0A1S5RH72	Helicobacter_phage	28.7	2.9e-45
QBF69075.1|1142196_1142955_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.7	1.7e-13
QBF69076.1|1142951_1143818_-	ABC transporter permease	NA	NA	NA	NA	NA
QBF69077.1|1143886_1144891_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBF69078.1|1145303_1148000_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
QBF69079.1|1148019_1149249_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
QBF69968.1|1149810_1150089_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
QBF69080.1|1150328_1150937_-	peptidase S51	NA	NA	NA	NA	NA
QBF69081.1|1151020_1152814_-	recombinase family protein	NA	A0A2I4R675	Erysipelothrix_phage	51.8	4.0e-151
QBF69082.1|1153263_1153467_-	XRE family transcriptional regulator	NA	A0A139ZPI6	Marinitoga_camini_virus	39.3	6.4e-05
QBF69083.1|1155542_1156328_-	multidrug ABC transporter permease	NA	NA	NA	NA	NA
QBF69084.1|1159157_1159925_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
QBF69085.1|1160025_1161663_-|tRNA	methionine--tRNA ligase	tRNA	A0A167RM67	Powai_lake_megavirus	32.0	2.5e-75
QBF69086.1|1161730_1162405_-	chloramphenicol acetyltransferase	NA	NA	NA	NA	NA
QBF69087.1|1162463_1162814_-	hypothetical protein	NA	NA	NA	NA	NA
QBF69088.1|1163251_1164262_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	34.3	2.1e-35
QBF69089.1|1164775_1165624_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
QBF69090.1|1165719_1166409_-|holin	CTP--phosphocholine cytidylyltransferase	holin	A0A127AW70	Bacillus_phage	45.0	3.4e-05
QBF69091.1|1166420_1167299_-	DMT family transporter	NA	NA	NA	NA	NA
QBF69092.1|1167288_1168158_-|holin	choline kinase	holin	NA	NA	NA	NA
QBF69093.1|1168174_1169197_-	ribitol-5-phosphate dehydrogenase	NA	NA	NA	NA	NA
QBF69094.1|1169201_1169909_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
QBF69095.1|1170244_1171732_+	type IV teichoic acid flippase	NA	NA	NA	NA	NA
QBF69096.1|1171741_1172545_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	5.3e-10
QBF69097.1|1172546_1173356_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	9.1e-10
>prophage 7
CP035897	Streptococcus pneumoniae strain EF3030 chromosome, complete genome	2101621	1305571	1311350	2101621		Streptococcus_phage(50.0%)	9	NA	NA
QBF69219.1|1305571_1306183_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
QBF69220.1|1306227_1306956_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
QBF69221.1|1306994_1307906_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.1	3.8e-89
QBF69222.1|1307971_1308208_-	DUF4059 family protein	NA	NA	NA	NA	NA
QBF69223.1|1308273_1309017_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
QBF69224.1|1309016_1309817_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBF69225.1|1309974_1310331_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
QBF69226.1|1310343_1310856_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	55.6	1.3e-46
QBF69227.1|1310855_1311350_-	N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.8	2.9e-43
>prophage 8
CP035897	Streptococcus pneumoniae strain EF3030 chromosome, complete genome	2101621	1405312	1412063	2101621	protease	Streptococcus_phage(50.0%)	9	NA	NA
QBF69312.1|1405312_1406278_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
QBF69313.1|1406311_1407223_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.3	9.8e-154
QBF69314.1|1407219_1408197_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	99.7	4.4e-184
QBF69315.1|1408193_1409084_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	3.9e-06
QBF69316.1|1409135_1409516_-	RidA family protein	NA	NA	NA	NA	NA
QBF69317.1|1409526_1410114_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
QBF69318.1|1410122_1411355_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.7	9.3e-131
QBF69319.1|1411386_1411557_-	hypothetical protein	NA	NA	NA	NA	NA
QBF69320.1|1411556_1412063_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	42.5	6.7e-27
>prophage 9
CP035897	Streptococcus pneumoniae strain EF3030 chromosome, complete genome	2101621	1716038	1723370	2101621		uncultured_Mediterranean_phage(33.33%)	10	NA	NA
QBF69596.1|1716038_1716740_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	36.5	4.1e-35
QBF69597.1|1716755_1716866_+	UDP-glucose 4-epimerase	NA	NA	NA	NA	NA
QBF69598.1|1717147_1718122_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	1.8e-57
QBF69599.1|1718111_1719068_+	ferrichrome ABC transporter permease	NA	NA	NA	NA	NA
QBF69600.1|1719064_1719817_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.6e-14
QBF69601.1|1719912_1720878_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBF69602.1|1721102_1721345_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	58.0	1.0e-17
QBF69603.1|1721344_1722067_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
QBF69604.1|1722053_1722623_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
QBF69605.1|1722641_1723370_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	6.9e-09
>prophage 10
CP035897	Streptococcus pneumoniae strain EF3030 chromosome, complete genome	2101621	2079474	2088228	2101621		Streptococcus_phage(33.33%)	9	NA	NA
QBF69910.1|2079474_2080314_-	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	1.1e-13
QBF69911.1|2080298_2081126_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
QBF69912.1|2081122_2081668_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
QBF69913.1|2081678_2082509_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QBF69914.1|2082541_2083825_-	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.5	4.2e-17
QBF69915.1|2083821_2085072_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.3	2.7e-93
QBF69916.1|2085230_2085599_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
QBF69917.1|2085601_2086699_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
QBF69918.1|2086749_2088228_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
