The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP036187	Klebsiella pneumoniae strain BA1559 chromosome, complete genome	5402442	2502899	2537520	5402442	integrase,head,capsid,terminase,tail,protease,portal,holin	Enterobacteria_phage(19.05%)	50	2502726:2502785	2542214:2542277
2502726:2502785	attL	CGGTCTCGAAAACCGGAGTAGGGGCAACTCTACCGGGGGTTCAAATCCCCCTCTCTCCGC	NA	NA	NA	NA
QBF96537.1|2502899_2503892_-|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	87.2	4.9e-175
QBF96538.1|2503893_2504121_-	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	78.4	2.4e-29
QBF96539.1|2504153_2504432_-	hypothetical protein	NA	K7PKM4	Enterobacterial_phage	46.1	3.0e-13
QBF96540.1|2505027_2505255_-	hypothetical protein	NA	NA	NA	NA	NA
QBF96541.1|2505254_2505578_-	hypothetical protein	NA	NA	NA	NA	NA
QBF96542.1|2505684_2505945_-	DUF4752 family protein	NA	T1S9K2	Salmonella_phage	73.2	2.4e-28
QBF96543.1|2505941_2506454_-	hypothetical protein	NA	NA	NA	NA	NA
QBF96544.1|2506450_2507236_-	hypothetical protein	NA	A4JX52	Burkholderia_virus	51.0	2.6e-62
QBF96545.1|2507235_2507535_-	hypothetical protein	NA	NA	NA	NA	NA
QBF99243.1|2508081_2508729_-	helix-turn-helix domain-containing protein	NA	H9C160	Pectobacterium_phage	63.0	9.3e-74
QBF96546.1|2508833_2509031_+	hypothetical protein	NA	H9C161	Pectobacterium_phage	66.1	2.7e-16
QBF96547.1|2509056_2509518_+	hypothetical protein	NA	K7PJS5	Enterobacterial_phage	87.5	3.8e-69
QBF96548.1|2509755_2509968_+	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	70.9	6.4e-16
QBF96549.1|2509924_2510839_+	transcriptional regulator	NA	H2DE83	Erwinia_phage	57.3	2.4e-30
QBF96550.1|2510835_2511645_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1C9II58	Salmonella_phage	68.5	6.5e-109
QBF96551.1|2511654_2512032_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	73.6	2.3e-48
QBF96552.1|2512044_2513025_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	66.6	4.6e-133
QBF96553.1|2513038_2513617_+	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	57.2	7.6e-51
QBF96554.1|2513768_2514008_+	hypothetical protein	NA	NA	NA	NA	NA
QBF96555.1|2514173_2514560_+	hypothetical protein	NA	A0A192Y8P2	Salmonella_phage	90.6	1.6e-57
QBF96556.1|2514546_2514828_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	46.2	7.7e-17
QBF96557.1|2514827_2515457_+	glycoside hydrolase family 19 protein	NA	F1C591	Cronobacter_phage	75.4	4.2e-87
QBF96558.1|2515459_2515735_+	hypothetical protein	NA	G8C7W1	Escherichia_phage	70.8	1.3e-24
QBF99244.1|2515685_2515883_+	hypothetical protein	NA	A0A286SGR9	Klebsiella_phage	90.2	7.0e-25
QBF96559.1|2515953_2516442_+	hypothetical protein	NA	NA	NA	NA	NA
QBF96560.1|2516528_2516912_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	94.5	5.2e-64
QBF96561.1|2516978_2517215_+	DUF2560 family protein	NA	A0A286N2R1	Klebsiella_phage	94.9	1.6e-31
QBF96562.1|2517244_2517499_+	DUF551 domain-containing protein	NA	NA	NA	NA	NA
QBF96563.1|2517581_2517815_+	hypothetical protein	NA	NA	NA	NA	NA
QBF96564.1|2517802_2518153_+	HNH endonuclease	NA	K7PHK9	Enterobacteria_phage	81.0	3.2e-52
QBF96565.1|2518805_2520563_+|terminase	terminase large subunit	terminase	A0A1B5FP96	Escherichia_phage	91.1	0.0e+00
QBF96566.1|2520573_2520759_+	hypothetical protein	NA	Q8HAD5	Salmonella_phage	61.7	6.2e-15
QBF96567.1|2520758_2521988_+|portal	phage portal protein	portal	U5P411	Shigella_phage	82.4	8.2e-204
QBF99245.1|2521974_2522628_+|head,protease	HK97 family phage prohead protease	head,protease	Q8W628	Enterobacteria_phage	87.9	7.1e-106
QBF96568.1|2522642_2523851_+|capsid	phage major capsid protein	capsid	M1FPN2	Enterobacteria_phage	84.8	2.2e-193
QBF96569.1|2523889_2524093_+	hypothetical protein	NA	M1FN89	Enterobacteria_phage	42.4	2.3e-07
QBF96570.1|2524089_2524410_+|head,tail	phage gp6-like head-tail connector protein	head,tail	K7PKT4	Enterobacteria_phage	39.8	1.7e-15
QBF96571.1|2524418_2524757_+|head,tail	head-tail adaptor protein	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	74.1	1.4e-41
QBF96572.1|2524753_2525203_+	HK97 gp10 family phage protein	NA	Q9MCS9	Enterobacteria_phage	81.9	9.7e-62
QBF96573.1|2525199_2525547_+	DUF3168 domain-containing protein	NA	K7PKL6	Enterobacterial_phage	62.8	8.0e-32
QBF96574.1|2525603_2526308_+|tail	phage tail protein	tail	K7PHL2	Enterobacterial_phage	66.5	1.6e-79
QBF96575.1|2526338_2526743_+|tail	phage tail protein	tail	K7PKV6	Enterobacterial_phage	57.7	8.5e-33
QBF96576.1|2526745_2527051_+	DUF4035 domain-containing protein	NA	Q9MCS5	Enterobacteria_phage	64.6	8.1e-28
QBF96577.1|2527124_2527358_+	hypothetical protein	NA	K7PH16	Enterobacteria_phage	47.2	1.9e-08
QBF96578.1|2527418_2530808_+|tail	phage tail tape measure protein	tail	A0A0P0ZCJ4	Stx2-converting_phage	57.7	1.6e-302
QBF96579.1|2530828_2531302_+	hypothetical protein	NA	A0A286S298	Klebsiella_phage	62.1	1.4e-55
QBF96580.1|2531288_2531765_+	DUF1833 domain-containing protein	NA	A0A286S2B1	Klebsiella_phage	65.8	4.8e-51
QBF96581.1|2531777_2532158_+	nitrite transporter	NA	A0A286S2A6	Klebsiella_phage	84.1	5.3e-61
QBF96582.1|2532154_2535232_+	kinase	NA	A0A286S259	Klebsiella_phage	62.0	0.0e+00
QBF96583.1|2535309_2537520_+	hypothetical protein	NA	B5TAB2	Burkholderia_phage	45.5	3.7e-98
2542214:2542277	attR	CGGTCTCGAAAACCGGAGTAGGGGCAACTCTACCGGGGGTTCAAATCCCCCTCTCTCCGCCACT	NA	NA	NA	NA
>prophage 2
CP036187	Klebsiella pneumoniae strain BA1559 chromosome, complete genome	5402442	3378640	3389527	5402442		Escherichia_phage(87.5%)	9	NA	NA
QBF97351.1|3378640_3381748_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	59.6	0.0e+00
QBF97352.1|3381802_3383068_+	MFS transporter	NA	NA	NA	NA	NA
QBF97353.1|3383098_3384187_-	chromosome segregation protein SMC	NA	A0A077SLJ9	Escherichia_phage	99.7	3.0e-210
QBF97354.1|3384273_3384534_-	hypothetical protein	NA	A0A077SK33	Escherichia_phage	98.8	5.4e-41
QBF99296.1|3384831_3385692_+	class A beta-lactamase SHV-28	NA	A0A077SL40	Escherichia_phage	99.3	1.7e-155
QBF97355.1|3385712_3386474_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
QBF97356.1|3386734_3387637_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	99.7	2.6e-159
QBF97357.1|3387648_3388914_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	99.3	1.1e-232
QBF97358.1|3388906_3389527_+	aldolase	NA	A0A077SK32	Escherichia_phage	100.0	8.0e-115
>prophage 3
CP036187	Klebsiella pneumoniae strain BA1559 chromosome, complete genome	5402442	3681061	3725696	5402442	holin,integrase,tail,terminase	Klebsiella_phage(24.44%)	59	3666967:3666982	3723002:3723017
3666967:3666982	attL	TATGCCCTACGATAGC	NA	NA	NA	NA
QBF97603.1|3681061_3684136_-	kinase	NA	A0A286S259	Klebsiella_phage	96.8	0.0e+00
QBF97604.1|3684132_3684513_-	nitrite transporter	NA	A0A286S2A6	Klebsiella_phage	94.4	2.4e-69
QBF97605.1|3684522_3685005_-	DUF1833 domain-containing protein	NA	A0A286S2B1	Klebsiella_phage	96.2	1.1e-82
QBF97606.1|3685185_3685650_-	hypothetical protein	NA	A0A286S298	Klebsiella_phage	68.4	3.0e-58
QBF97607.1|3685649_3688550_-|tail	phage tail protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	32.0	5.2e-100
QBF99313.1|3688641_3689115_-	zinc ribbon domain-containing protein	NA	S4TR42	Salmonella_phage	57.4	4.6e-22
QBF97608.1|3689228_3689426_-	hypothetical protein	NA	NA	NA	NA	NA
QBF97609.1|3689563_3690046_-	hypothetical protein	NA	NA	NA	NA	NA
QBF97610.1|3690099_3691272_-	Ig domain-containing protein	NA	A0A0D4DBN5	Acinetobacter_phage	27.0	1.2e-23
QBF97611.1|3691295_3691688_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA	NA
QBF97612.1|3691684_3692236_-	hypothetical protein	NA	G8C7Q1	Escherichia_phage	39.9	7.8e-29
QBF97613.1|3692237_3692621_-	glutamate 5-kinase	NA	A0A0S2SYG4	Pseudomonas_phage	45.2	7.1e-21
QBF97614.1|3692607_3692841_-	hypothetical protein	NA	A0A2H4J0Y9	uncultured_Caudovirales_phage	47.1	5.8e-10
QBF97615.1|3692850_3693105_-	hypothetical protein	NA	J9Q7U0	Salmonella_phage	52.4	8.0e-21
QBF97616.1|3693106_3693502_-	protein singed	NA	A0A0S2SYB7	Pseudomonas_phage	43.3	3.3e-13
QBF97617.1|3693542_3693815_-	hypothetical protein	NA	NA	NA	NA	NA
QBF97618.1|3693823_3694777_-	Ig domain-containing protein	NA	A0A1B0VMF8	Pseudomonas_phage	74.0	2.5e-131
QBF97619.1|3694787_3695573_-	hypothetical protein	NA	A0A1B0VMG1	Pseudomonas_phage	63.9	1.0e-66
QBF97620.1|3695657_3696770_-	hypothetical protein	NA	I6PD76	Cronobacter_phage	55.2	4.8e-110
QBF97621.1|3696753_3698097_-	DUF4055 domain-containing protein	NA	A0A1B0VMH0	Pseudomonas_phage	54.6	5.9e-123
QBF97622.1|3699436_3700441_-|terminase	terminase small subunit	terminase	Q5QF76	Pseudomonas_virus	45.5	1.5e-38
QBF97623.1|3700989_3701175_-	hypothetical protein	NA	NA	NA	NA	NA
QBF97624.1|3701303_3701549_-	DUF2560 family protein	NA	A0A286N2R1	Klebsiella_phage	96.3	4.6e-34
QBF97625.1|3702362_3702557_-	hypothetical protein	NA	A0A286SGR9	Klebsiella_phage	89.1	1.4e-25
QBF97626.1|3702507_3702783_-	hypothetical protein	NA	A0A286N2Q8	Klebsiella_phage	72.5	2.2e-08
QBF97627.1|3702779_3703124_-	hypothetical protein	NA	A0A286N2Q7	Klebsiella_phage	80.7	2.0e-38
QBF97628.1|3703120_3703660_-	hypothetical protein	NA	A0A286N2Q6	Klebsiella_phage	100.0	2.3e-102
QBF99314.1|3703656_3703956_-|holin	holin	holin	A0A286N2Q5	Klebsiella_phage	98.0	1.9e-45
QBF99315.1|3704569_3705016_+	hypothetical protein	NA	NA	NA	NA	NA
QBF99316.1|3704921_3705179_-	hypothetical protein	NA	A0A286N2Q3	Klebsiella_phage	98.8	2.8e-42
QBF97629.1|3705332_3706115_-	antitermination protein	NA	F1C595	Cronobacter_phage	79.1	2.9e-114
QBF97630.1|3706111_3706480_-	RusA family crossover junction endodeoxyribonuclease	NA	G8C7V6	Escherichia_phage	63.8	3.5e-41
QBF97631.1|3706476_3706773_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	71.9	1.7e-35
QBF97632.1|3706775_3706982_-	hypothetical protein	NA	H6WRY8	Salmonella_phage	72.7	1.4e-23
QBF97633.1|3707637_3707859_-	hypothetical protein	NA	NA	NA	NA	NA
QBF97634.1|3707936_3708170_-	DNA damage-inducible protein I	NA	K7PM44	Enterobacteria_phage	67.5	7.0e-24
QBF97635.1|3708772_3709615_-	hypothetical protein	NA	NA	NA	NA	NA
QBF99317.1|3709604_3710648_-	DGQHR domain-containing protein	NA	NA	NA	NA	NA
QBF97636.1|3710901_3711138_-	hypothetical protein	NA	A0A2R2Z309	Escherichia_phage	92.1	2.4e-32
QBF97637.1|3711130_3711334_-	hypothetical protein	NA	A0A2R2Z313	Escherichia_phage	92.5	3.7e-29
QBF97638.1|3711330_3711699_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	44.3	6.4e-11
QBF97639.1|3711706_3712456_-	DNA replication protein DnaC	NA	H6WRX8	Salmonella_phage	80.3	3.0e-116
QBF99318.1|3712458_3713298_-	hypothetical protein	NA	Q8HA96	Salmonella_phage	53.1	2.3e-24
QBF97640.1|3713363_3714158_-	hypothetical protein	NA	C7BGF1	Burkholderia_phage	51.3	6.3e-64
QBF97641.1|3714286_3714823_-	hypothetical protein	NA	K7PJT7	Enterobacteria_phage	69.5	4.4e-61
QBF97642.1|3714825_3715089_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QBF97643.1|3715185_3715542_+	hypothetical protein	NA	NA	NA	NA	NA
QBF97644.1|3715768_3716077_+	hypothetical protein	NA	G8C7T6	Escherichia_phage	62.2	1.7e-25
QBF97645.1|3716168_3716267_+	hypothetical protein	NA	NA	NA	NA	NA
QBF97646.1|3716373_3716565_+	DUF1482 family protein	NA	NA	NA	NA	NA
QBF97647.1|3716573_3716729_+	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	71.2	1.5e-14
QBF97648.1|3716866_3720016_+	exodeoxyribonuclease	NA	H6WRX1	Salmonella_phage	56.4	1.0e-290
QBF97649.1|3720028_3721138_+	enterohemolysin	NA	H6WRX0	Salmonella_phage	86.7	1.0e-184
QBF97650.1|3721178_3721418_+	DUF4060 family protein	NA	M9P0E0	Enterobacteria_phage	67.5	6.8e-22
QBF97651.1|3721427_3721742_+	hypothetical protein	NA	K7PM28	Enterobacteria_phage	50.8	1.6e-10
QBF97652.1|3721638_3722826_-|integrase	site-specific integrase	integrase	K7PGY1	Enterobacteria_phage	52.2	4.2e-120
QBF97653.1|3723002_3723893_+	peptide ABC transporter permease SapC	NA	NA	NA	NA	NA
3723002:3723017	attR	TATGCCCTACGATAGC	NA	NA	NA	NA
QBF97654.1|3723892_3724885_+	peptide ABC transporter ATP-binding protein SapD	NA	G9BWD6	Planktothrix_phage	27.2	3.0e-07
QBF97655.1|3724886_3725696_+	peptide ABC transporter ATP-binding protein SapF	NA	A0A2H4PQG7	Staphylococcus_phage	28.9	2.1e-14
>prophage 4
CP036187	Klebsiella pneumoniae strain BA1559 chromosome, complete genome	5402442	3845992	3891659	5402442	integrase,head,capsid,terminase,plate,tail,tRNA,portal	Enterobacteria_phage(52.94%)	55	3851216:3851237	3887921:3887942
QBF97772.1|3845992_3846493_+|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
QBF97773.1|3846609_3847056_+	DUF441 domain-containing protein	NA	NA	NA	NA	NA
QBF99321.1|3847039_3847831_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QBF97774.1|3847932_3849117_+	MFS transporter	NA	NA	NA	NA	NA
QBF97775.1|3849148_3849841_-	hypothetical protein	NA	NA	NA	NA	NA
QBF97776.1|3849986_3850496_+	DUF523 domain-containing protein	NA	NA	NA	NA	NA
QBF99322.1|3850482_3850839_+	DUF488 domain-containing protein	NA	NA	NA	NA	NA
QBF97777.1|3850828_3851068_-	DUF333 domain-containing protein	NA	NA	NA	NA	NA
3851216:3851237	attL	CGCCCCCGACGGGGCTTTTTTT	NA	NA	NA	NA
QBF99323.1|3851332_3851584_-	hypothetical protein	NA	A0A2I8TV89	Erwinia_phage	49.2	3.4e-08
QBF97778.1|3851627_3852767_-	phage late control D family protein	NA	B9A7A9	Serratia_phage	70.5	3.0e-144
QBF97779.1|3852921_3854094_+|tail	phage tail sheath family protein	tail	A0A0A7NV69	Enterobacteria_phage	70.5	1.1e-157
QBF97780.1|3854093_3854609_+|tail	phage major tail tube protein	tail	A0A0A7NPV8	Enterobacteria_phage	61.2	2.2e-57
QBF97781.1|3854654_3854972_+|tail	phage tail assembly protein	tail	B9A7B2	Serratia_phage	54.8	1.0e-17
QBF99324.1|3854971_3855130_+|tail	GpE family phage tail protein	tail	A0A0A7NQ96	Enterobacteria_phage	63.3	3.5e-11
QBF97782.1|3855116_3858092_+|tail	phage tail tape measure protein	tail	A0A0A7NRZ9	Enterobacteria_phage	46.6	1.8e-220
QBF97783.1|3858107_3858599_+|tail	phage tail protein	tail	A0A0A7NV65	Enterobacteria_phage	62.7	2.1e-54
QBF97784.1|3858843_3860202_+	hypothetical protein	NA	A0A1W6JNS5	Morganella_phage	28.7	7.5e-49
QBF97785.1|3860355_3861453_-|tail	phage tail protein	tail	G4KKN6	Yersinia_phage	47.8	5.2e-08
QBF97786.1|3861452_3861665_-	hypothetical protein	NA	NA	NA	NA	NA
QBF97787.1|3861661_3864688_-|tail	phage tail protein I	tail	D5LGZ2	Escherichia_phage	40.7	6.4e-24
QBF97788.1|3864677_3865601_-|plate	baseplate assembly protein	plate	A0A0A7NPY5	Enterobacteria_phage	44.6	6.9e-54
QBF97789.1|3865602_3865953_-|plate	baseplate assembly protein	plate	A0A0A7NQ90	Enterobacteria_phage	54.8	9.3e-28
QBF97790.1|3865949_3866537_-|plate	phage baseplate assembly protein V	plate	A0A0A7NRZ3	Enterobacteria_phage	60.5	6.9e-60
QBF97791.1|3866533_3867169_-	phage virion morphogenesis protein	NA	A0A0A7NV60	Enterobacteria_phage	51.9	4.6e-57
QBF97792.1|3867165_3867633_-|tail	phage tail protein	tail	A0A0A7NPU6	Enterobacteria_phage	58.8	4.5e-46
QBF97793.1|3867633_3867897_-	peptidase	NA	B6SD31	Bacteriophage	34.5	3.7e-05
QBF97794.1|3867814_3868144_-	DUF2570 domain-containing protein	NA	NA	NA	NA	NA
QBF97795.1|3868155_3868701_-	lysozyme	NA	Q1I0Z1	Pasteurella_virus	44.1	9.7e-32
QBF97796.1|3868697_3868982_-|tail	phage tail protein	tail	NA	NA	NA	NA
QBF97797.1|3868972_3869173_-|tail	phage tail protein	tail	A0A0A7NV57	Enterobacteria_phage	63.1	1.6e-16
QBF97798.1|3869172_3869688_-|head	head completion/stabilization protein	head	A0A0A7NPU2	Enterobacteria_phage	49.4	3.1e-40
QBF97799.1|3869792_3870659_-|terminase	terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	57.3	8.4e-70
QBF97800.1|3870708_3871743_-|capsid	phage major capsid protein, P2 family	capsid	A0A0M3ULA3	Salmonella_phage	50.0	8.1e-96
QBF97801.1|3871753_3872593_-|capsid	GPO family capsid scaffolding protein	capsid	A0A0A7NRY7	Enterobacteria_phage	65.9	1.6e-94
QBF97802.1|3872749_3874477_+	oxidoreductase	NA	A0A0A7NV54	Enterobacteria_phage	68.1	6.9e-233
QBF97803.1|3874470_3875532_+|portal	phage portal protein	portal	A0A0A7NPT9	Enterobacteria_phage	68.4	1.0e-141
QBF97804.1|3876007_3876706_-	hypothetical protein	NA	NA	NA	NA	NA
QBF99325.1|3877680_3878688_-	hypothetical protein	NA	NA	NA	NA	NA
QBF97805.1|3883067_3884003_-	DNA adenine methylase	NA	A0A0M4QWR0	Salmonella_phage	55.9	1.9e-83
QBF97806.1|3883999_3884227_-	hypothetical protein	NA	A0A286S1P6	Klebsiella_phage	41.0	1.9e-05
QBF97807.1|3884235_3884802_-	3'-5' exoribonuclease	NA	D4HTX2	Vibrio_phage	33.2	9.5e-14
QBF97808.1|3884798_3885023_-	hypothetical protein	NA	NA	NA	NA	NA
QBF97809.1|3885100_3885364_-	hypothetical protein	NA	NA	NA	NA	NA
QBF97810.1|3885379_3885757_-	hypothetical protein	NA	NA	NA	NA	NA
QBF97811.1|3885772_3885991_-	DUF4761 domain-containing protein	NA	A0A0M5M1I3	Salmonella_phage	49.1	3.6e-06
QBF97812.1|3886011_3886290_-	hypothetical protein	NA	Q1JS60	Enterobacteria_phage	88.9	6.2e-43
QBF97813.1|3886410_3886710_+	XRE family transcriptional regulator	NA	Q1JS61	Enterobacteria_phage	77.8	6.5e-38
QBF97814.1|3886825_3887809_+|integrase	integrase	integrase	Q83VS6	Escherichia_phage	80.1	6.4e-151
QBF97815.1|3888073_3889087_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	29.0	1.9e-12
3887921:3887942	attR	CGCCCCCGACGGGGCTTTTTTT	NA	NA	NA	NA
QBF97816.1|3889144_3889246_+	hypothetical protein	NA	NA	NA	NA	NA
QBF99326.1|3889245_3889320_+	protein YoaJ	NA	NA	NA	NA	NA
QBF97817.1|3889437_3889563_+	hypothetical protein	NA	NA	NA	NA	NA
QBF97818.1|3889622_3889886_-	DUF2534 family protein	NA	NA	NA	NA	NA
QBF97819.1|3890016_3890655_-	leucine efflux protein LeuE	NA	NA	NA	NA	NA
QBF97820.1|3890744_3891659_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	NA	A0A1W6JP29	Morganella_phage	50.0	3.2e-72
>prophage 5
CP036187	Klebsiella pneumoniae strain BA1559 chromosome, complete genome	5402442	4170842	4180307	5402442	protease,tRNA	Brazilian_cedratvirus(16.67%)	8	NA	NA
QBF98056.1|4170842_4172564_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	34.3	2.0e-14
QBF98057.1|4172608_4173310_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
QBF98058.1|4173663_4173882_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
QBF98059.1|4174003_4176283_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	1.6e-165
QBF98060.1|4176313_4176631_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	2.0e-13
QBF98061.1|4176956_4177178_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	1.3e-16
QBF98062.1|4177254_4179195_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.5	1.9e-37
QBF98063.1|4179191_4180307_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	52.7	1.3e-06
>prophage 6
CP036187	Klebsiella pneumoniae strain BA1559 chromosome, complete genome	5402442	4641294	4700831	5402442	integrase,head,lysis,terminase,protease,tRNA	Enterobacteria_phage(21.15%)	75	4640777:4640822	4688077:4688122
4640777:4640822	attL	ATGGCACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAG	NA	NA	NA	NA
QBF98469.1|4641294_4641534_-	hypothetical protein	NA	K7P7N3	Enterobacteria_phage	55.7	4.5e-18
QBF98470.1|4641611_4643096_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	34.1	1.1e-29
QBF99365.1|4643587_4644208_-	hypothetical protein	NA	NA	NA	NA	NA
QBF98471.1|4644354_4646841_-	hypothetical protein	NA	B5TAB2	Burkholderia_phage	46.3	3.7e-102
QBF98472.1|4646850_4647894_-	hypothetical protein	NA	A0A077KC23	Edwardsiella_phage	41.5	4.4e-17
QBF98473.1|4647895_4648483_-	DUF2612 domain-containing protein	NA	A0A077K9U8	Edwardsiella_phage	43.4	3.8e-34
QBF98474.1|4648475_4649708_-	hypothetical protein	NA	A0A077KGW9	Edwardsiella_phage	51.2	7.9e-106
QBF98475.1|4649715_4650072_-	hypothetical protein	NA	NA	NA	NA	NA
QBF98476.1|4650137_4650791_-	hypothetical protein	NA	NA	NA	NA	NA
QBF98477.1|4650790_4651378_-	hypothetical protein	NA	A1Z003	Burkholderia_virus	23.4	7.5e-06
QBF98478.1|4651367_4652237_-	hypothetical protein	NA	NA	NA	NA	NA
QBF98479.1|4652233_4652539_-	hypothetical protein	NA	A0A077K9U4	Edwardsiella_phage	48.5	3.6e-20
QBF98480.1|4653382_4655341_-	lytic transglycosylase domain-containing protein	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	38.1	4.4e-42
QBF98481.1|4655545_4656022_-	hypothetical protein	NA	A0A068CGG2	Acinetobacter_phage	29.9	5.5e-07
QBF98482.1|4656837_4657281_-	hypothetical protein	NA	NA	NA	NA	NA
QBF98483.1|4657280_4658762_-	DUF3383 domain-containing protein	NA	Q2NPD0	Xanthomonas_phage	34.8	4.6e-60
QBF98484.1|4658765_4659317_-	hypothetical protein	NA	NA	NA	NA	NA
QBF98485.1|4659298_4659667_-	hypothetical protein	NA	Q6UJ26	Burkholderia_virus	29.8	1.2e-06
QBF98486.1|4659663_4660227_-	hypothetical protein	NA	A0A190XCA2	Acinetobacter_phage	36.2	1.8e-17
QBF98487.1|4660229_4660673_-	DUF4054 domain-containing protein	NA	E2GLV0	Acinetobacter_phage	41.7	1.3e-13
QBF98488.1|4660672_4660999_-	hypothetical protein	NA	A0A1X9SFA9	Acinetobacter_phage	42.6	2.1e-10
QBF98489.1|4662036_4662519_-	hypothetical protein	NA	A0A219YBF2	Aeromonas_phage	50.3	4.5e-33
QBF98490.1|4662520_4663687_-	DUF2213 domain-containing protein	NA	A0A219YCD3	Aeromonas_phage	37.1	4.4e-58
QBF99366.1|4663690_4664389_-|head	phage head morphogenesis protein	head	H9C0V1	Aeromonas_phage	53.1	3.6e-63
QBF98491.1|4664441_4665962_-	DUF1073 domain-containing protein	NA	A0A2R3UAL5	Myoviridae_environmental_samples	45.2	4.8e-105
QBF98492.1|4665962_4667639_-|terminase	terminase	terminase	H9C191	Pectobacterium_phage	74.4	1.8e-249
QBF98493.1|4667640_4668273_-|terminase	terminase small subunit	terminase	A0A2I7RHH8	Vibrio_phage	48.5	5.4e-42
QBF98494.1|4668594_4668870_-	hypothetical protein	NA	K7P6G5	Enterobacteria_phage	61.5	7.1e-23
QBF98495.1|4668905_4669373_-|lysis	lysis protein	lysis	Q76H63	Enterobacteria_phage	73.5	2.8e-56
QBF98496.1|4669369_4669873_-	lysozyme	NA	M1FJA0	Enterobacteria_phage	80.8	1.9e-74
QBF98497.1|4669875_4670190_-	hypothetical protein	NA	H6WRZ3	Salmonella_phage	86.1	8.3e-44
QBF98498.1|4670716_4671262_-	antiterminator	NA	G8C7V7	Escherichia_phage	92.3	1.9e-83
QBF98499.1|4671258_4671399_-	YlcG family protein	NA	NA	NA	NA	NA
QBF98500.1|4671395_4671779_-	hypothetical protein	NA	A0A2R2Z307	Escherichia_phage	43.8	1.0e-19
QBF98501.1|4671795_4672356_-	recombination protein NinG	NA	E7C9S3	Salmonella_phage	51.4	9.9e-40
QBF98502.1|4672348_4672519_-	NinE family protein	NA	G8C7V4	Escherichia_phage	71.4	2.8e-14
QBF98503.1|4672524_4673121_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	54.8	1.2e-56
QBF99367.1|4673278_4673527_-	hypothetical protein	NA	NA	NA	NA	NA
QBF98504.1|4674790_4675210_-	hypothetical protein	NA	A0A2R2Z312	Escherichia_phage	54.3	7.7e-37
QBF98505.1|4675418_4675682_-	DUF4752 family protein	NA	T1S9K2	Salmonella_phage	75.6	2.2e-29
QBF99368.1|4675678_4676167_-	hypothetical protein	NA	E7C9P6	Salmonella_phage	52.4	1.3e-22
QBF98506.1|4676403_4676697_-	protein ren	NA	M1FPD5	Enterobacteria_phage	62.4	2.1e-25
QBF98507.1|4676693_4677542_-	AAA family ATPase	NA	K7PLU3	Enterobacteria_phage	60.8	9.3e-90
QBF98508.1|4677538_4678399_-	replication protein	NA	K7PGT1	Enterobacteria_phage	53.3	1.0e-59
QBF98509.1|4678484_4678706_-	transcriptional regulator	NA	G8EYH8	Enterobacteria_phage	41.7	6.9e-05
QBF98510.1|4678746_4678974_-	helix-turn-helix domain-containing protein	NA	Q76H55	Enterobacteria_phage	77.1	1.4e-24
QBF98511.1|4679085_4679784_+	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	84.1	6.2e-108
QBF98512.1|4679929_4680334_+	hypothetical protein	NA	NA	NA	NA	NA
QBF98513.1|4681037_4681232_+	hypothetical protein	NA	NA	NA	NA	NA
QBF98514.1|4681320_4682292_+	hypothetical protein	NA	A0A077KCC0	Edwardsiella_phage	77.7	1.7e-39
QBF98515.1|4682299_4682584_+	host nuclease inhibitor GamL	NA	G8C7T1	Escherichia_phage	79.8	6.6e-40
QBF98516.1|4682599_4683445_+	phage recombination protein Bet	NA	A0A1I9KF88	Aeromonas_phage	60.7	2.0e-68
QBF98517.1|4683441_4683729_+	hypothetical protein	NA	NA	NA	NA	NA
QBF98518.1|4683730_4684411_+	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	93.4	7.9e-124
QBF98519.1|4684407_4684836_+	regulator	NA	M9NYX4	Enterobacteria_phage	81.7	2.6e-64
QBF98520.1|4684832_4685489_+	DNA methyltransferase	NA	G8C7S6	Escherichia_phage	84.7	1.1e-109
QBF98521.1|4685485_4686253_+	dcm methylase	NA	D5LH17	Escherichia_phage	53.4	1.7e-66
QBF98522.1|4686249_4686468_+	hypothetical protein	NA	A0A1I9LJM7	Stx_converting_phage	47.2	1.6e-09
QBF98523.1|4686469_4686685_+	TraR/DksA family transcriptional regulator	NA	A0A0K2FI84	Escherichia_phage	51.4	2.0e-12
QBF98524.1|4686686_4687022_+	DNA-binding protein	NA	NA	NA	NA	NA
QBF99369.1|4687018_4688062_+|integrase	site-specific integrase	integrase	G8C7S0	Escherichia_phage	85.6	2.9e-178
QBF98525.1|4688131_4688455_-	hypothetical protein	NA	NA	NA	NA	NA
4688077:4688122	attR	ATGGCACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAG	NA	NA	NA	NA
QBF98526.1|4688493_4689360_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	34.8	1.3e-30
QBF98527.1|4689361_4689574_+	ribosome-associated protein YbcJ	NA	NA	NA	NA	NA
QBF98528.1|4689619_4691005_-|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	35.4	3.5e-46
QBF98529.1|4691180_4691675_+	peptidylprolyl isomerase B	NA	NA	NA	NA	NA
QBF98530.1|4691678_4692401_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
QBF98531.1|4692508_4692847_+	hypothetical protein	NA	NA	NA	NA	NA
QBF98532.1|4692943_4693453_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA	NA
QBF98533.1|4693449_4694517_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
QBF98534.1|4694628_4695705_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
QBF98535.1|4695812_4696958_-	porin	NA	NA	NA	NA	NA
QBF98536.1|4697139_4699554_-	ABC transporter permease	NA	NA	NA	NA	NA
QBF98537.1|4699550_4700237_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.7	1.6e-31
QBF98538.1|4700204_4700831_+|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	protease	NA	NA	NA	NA
>prophage 1
CP036188	Klebsiella pneumoniae strain BA1559 plasmid pIncFIBK, complete sequence	251327	5930	68858	251327	transposase,protease	uncultured_Caudovirales_phage(27.78%)	52	NA	NA
QBF99410.1|5930_6599_-|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	99.5	1.9e-130
QBF99411.1|6890_7895_-|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
QBF99412.1|10788_11616_+	phosphonate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.6	9.0e-21
QBF99413.1|11612_12476_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBF99414.1|12484_13312_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
QBF99415.1|13320_14331_+	phosphonate dehydrogenase	NA	A0A1V0SBV6	Catovirus	25.1	1.4e-15
QBF99416.1|14324_15194_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBF99417.1|15899_16226_-	hypothetical protein	NA	NA	NA	NA	NA
QBF99418.1|16402_17383_-|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	98.8	2.6e-184
QBF99610.1|19368_19650_+	DNA-binding protein	NA	A0A1B1IUF9	uncultured_Mediterranean_phage	38.2	5.2e-05
QBF99419.1|19684_20254_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
QBF99420.1|20368_23164_+	heat shock survival AAA family ATPase ClpK	NA	K4FB40	Cronobacter_phage	41.0	5.2e-129
QBF99421.1|23163_23361_+	hypothetical protein	NA	NA	NA	NA	NA
QBF99422.1|23598_24348_+	diguanylate cyclase	NA	NA	NA	NA	NA
QBF99423.1|24334_25297_+|protease	Zn-dependent protease	protease	NA	NA	NA	NA
QBF99424.1|27138_28485_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
QBF99425.1|28696_29179_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBF99426.1|29166_29433_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
QBF99427.1|29608_29863_-	hypothetical protein	NA	NA	NA	NA	NA
QBF99428.1|30240_30444_-	hemolysin expression modulator Hha	NA	NA	NA	NA	NA
QBF99429.1|30888_31383_-	DNA-binding protein	NA	NA	NA	NA	NA
QBF99430.1|31413_31989_-	hypothetical protein	NA	NA	NA	NA	NA
QBF99431.1|31976_32246_-	hypothetical protein	NA	NA	NA	NA	NA
QBF99432.1|32603_32954_+	transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	50.9	1.4e-23
QBF99433.1|33003_33366_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA	NA
QBF99434.1|35180_36470_+	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	74.0	1.9e-171
QBF99435.1|36482_36908_+	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	72.9	2.3e-52
QBF99436.1|36940_37477_-	N-acetyltransferase family protein	NA	NA	NA	NA	NA
QBF99437.1|39373_39736_-	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA	NA
QBF99438.1|39811_40357_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
QBF99611.1|40365_41076_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	77.0	2.9e-92
QBF99439.1|41732_42230_+	N-acetyltransferase family protein	NA	NA	NA	NA	NA
QBF99440.1|42279_42789_-	porin	NA	NA	NA	NA	NA
QBF99441.1|44531_44711_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
QBF99442.1|44942_45377_-	copper resistance system metallochaperone PcoE	NA	NA	NA	NA	NA
QBF99443.1|45593_46994_-	copper resistance membrane spanning protein PcoS	NA	W8CYF6	Bacillus_phage	26.3	4.1e-18
QBF99444.1|46990_47671_-	copper response regulator transcription factor PcoR	NA	W8CYM9	Bacillus_phage	34.4	8.7e-30
QBF99445.1|48658_49039_-	copper resistance system metallochaperone PcoC	NA	NA	NA	NA	NA
QBF99612.1|49078_49975_-	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA	NA
QBF99446.1|49974_51792_-	multicopper oxidase PcoA	NA	NA	NA	NA	NA
QBF99447.1|52025_52475_+	copper resistance protein	NA	NA	NA	NA	NA
QBF99448.1|52763_53501_+	peptidase M23	NA	A0A2H4JAF5	uncultured_Caudovirales_phage	32.5	1.2e-11
QBF99449.1|53534_53732_-	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
QBF99450.1|53772_56220_-	Ag(+)-translocating P-type ATPase SilP	NA	A0A218MNH6	uncultured_virus	35.8	7.6e-84
QBF99451.1|56346_56787_-	hypothetical protein	NA	NA	NA	NA	NA
QBF99452.1|56873_60020_-	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	NA	S5VTK5	Leptospira_phage	22.5	4.0e-61
QBF99453.1|60030_61323_-	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA	NA
QBF99454.1|61436_61790_-	copper ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBF99613.1|63392_64073_+	copper/silver response regulator transcription factor SilR	NA	W8CYM9	Bacillus_phage	35.6	2.1e-31
QBF99455.1|64065_65541_+	copper/silver sensor histidine kinase SilS	NA	W8CYF6	Bacillus_phage	30.1	1.0e-27
QBF99456.1|65791_66223_+	silver-binding protein SilE	NA	NA	NA	NA	NA
QBF99614.1|67651_68858_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	63.2	1.7e-100
>prophage 2
CP036188	Klebsiella pneumoniae strain BA1559 plasmid pIncFIBK, complete sequence	251327	193173	227088	251327	integrase,transposase,protease	Escherichia_phage(27.27%)	28	198519:198570	248015:248066
QBF99575.1|193173_193827_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QBF99576.1|193919_194177_+	antitoxin PemI	NA	NA	NA	NA	NA
QBF99577.1|194178_194511_+	mRNA interferase PemK	NA	NA	NA	NA	NA
QBF99578.1|194647_197545_-|transposase	Tn3-like element Tn5403 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	37.8	4.2e-182
198519:198570	attL	GGCCTTTGAATAAGACAAAAGGCTGCCTCATCGCTAACTTTGCAACAGTGCC	NA	NA	NA	NA
QBF99579.1|198639_199545_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
QBF99580.1|199541_200780_+	MFS transporter	NA	NA	NA	NA	NA
QBF99581.1|200779_201364_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBF99582.1|201309_201666_+	hypothetical protein	NA	NA	NA	NA	NA
QBF99583.1|201856_202621_-|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
QBF99584.1|202649_202832_+	resolvase	NA	NA	NA	NA	NA
QBF99585.1|202847_203153_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
QBF99586.1|203163_204369_-	chromate efflux transporter	NA	NA	NA	NA	NA
QBF99587.1|204524_204728_-	hypothetical protein	NA	NA	NA	NA	NA
QBF99588.1|204746_204926_+	hypothetical protein	NA	NA	NA	NA	NA
QBF99589.1|204855_205695_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
QBF99590.1|205688_206036_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
QBF99591.1|206199_206988_-	AadA family aminoglycoside 3''-O-nucleotidyltransferase	NA	NA	NA	NA	NA
QBF99628.1|206993_207233_-	DUF1010 domain-containing protein	NA	NA	NA	NA	NA
QBF99592.1|207394_207892_-	trimethoprim-resistant dihydrofolate reductase DfrA12	NA	A0A0A0PL85	Bacillus_phage	40.9	1.3e-22
QBF99593.1|208036_209050_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
QBF99629.1|209252_209603_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
QBF99594.1|209728_210289_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	86.2	4.0e-49
QBF99595.1|212909_213770_-	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
QBF99596.1|213952_214510_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	100.0	7.0e-94
QBF99597.1|220155_220860_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBF99630.1|220915_221107_+	DUF4158 domain-containing protein	NA	Q1MVP5	Enterobacteria_phage	98.0	3.2e-22
QBF99598.1|223733_224066_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA	NA
QBF99599.1|226383_227088_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
248015:248066	attR	GGCACTGTTGCAAAGTTAGCGATGAGGCAGCCTTTTGTCTTATTCAAAGGCC	NA	NA	NA	NA
