The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP036514	Hafnia alvei strain PCM_1220 chromosome, complete genome	4549364	1051365	1079890	4549364	portal,tail,integrase,terminase,holin,head,capsid	Cronobacter_phage(86.67%)	38	1051232:1051279	1081755:1081802
1051232:1051279	attL	ATTTGGTGGAGCTGGGGGGATTTGAACCCCCGTCCGAAATTACTACAC	NA	NA	NA	NA
QBJ32302.1|1051365_1052412_-|integrase	site-specific integrase	integrase	F1BUN9	Cronobacter_phage	69.9	1.8e-143
QBJ32303.1|1052411_1052978_-	Repressor protein CI	NA	F1BUN8	Cronobacter_phage	59.4	1.4e-62
QBJ32304.1|1053132_1053318_+	hypothetical protein	NA	F1BUN7	Cronobacter_phage	51.7	1.2e-13
QBJ32305.1|1053376_1053880_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	58.1	1.4e-45
QBJ32306.1|1053967_1054210_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ32307.1|1054306_1054495_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32308.1|1054497_1054878_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32309.1|1054887_1055295_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32310.1|1055374_1055614_+	DUF2732 family protein	NA	NA	NA	NA	NA
QBJ32311.1|1055604_1056420_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	F1BUN1	Cronobacter_phage	62.9	3.5e-94
QBJ32312.1|1056412_1056706_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32313.1|1056705_1058766_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	62.5	5.5e-237
QBJ32314.1|1058859_1059081_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32315.1|1059060_1059381_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	71.0	1.9e-35
QBJ32316.1|1059377_1060406_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	75.4	1.8e-151
QBJ32317.1|1060402_1062175_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	73.6	3.4e-259
QBJ32318.1|1062332_1063160_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	38.9	9.2e-42
QBJ32319.1|1063211_1064237_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	73.0	3.0e-135
QBJ32320.1|1064240_1064939_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	62.6	2.7e-79
QBJ32321.1|1065033_1065486_+|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	68.0	9.7e-54
QBJ32322.1|1065482_1065983_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	62.2	1.2e-55
QBJ32323.1|1065979_1066690_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	62.4	9.2e-75
QBJ32324.1|1066686_1067817_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	71.2	7.6e-148
QBJ32325.1|1067813_1068269_+	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	62.3	4.6e-51
QBJ35244.1|1068278_1068569_+|holin	holin	holin	C7BGD7	Burkholderia_phage	50.6	2.3e-16
QBJ32326.1|1068565_1068907_+	M15 family peptidase	NA	F1BUL3	Cronobacter_phage	81.2	1.1e-44
QBJ32327.1|1068906_1069269_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32328.1|1069225_1069414_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	66.7	1.8e-14
QBJ32329.1|1069403_1069667_+	hypothetical protein	NA	Q775G2	Haemophilus_virus	46.3	1.3e-13
QBJ32330.1|1069675_1069858_+	hypothetical protein	NA	A5X9I8	Aeromonas_virus	56.5	3.6e-07
QBJ32331.1|1069854_1072032_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	57.5	2.5e-224
QBJ32332.1|1072028_1072358_+	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	70.6	5.6e-35
QBJ32333.1|1072354_1073539_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	79.3	2.4e-176
QBJ32334.1|1073531_1074131_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	72.1	1.3e-77
QBJ32335.1|1076390_1076978_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	45.8	1.8e-44
QBJ32336.1|1076967_1077693_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	50.6	1.6e-58
QBJ32337.1|1077664_1078210_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	63.7	1.9e-48
QBJ32338.1|1078213_1079890_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	66.8	4.4e-192
1081755:1081802	attR	ATTTGGTGGAGCTGGGGGGATTTGAACCCCCGTCCGAAATTACTACAC	NA	NA	NA	NA
>prophage 2
CP036514	Hafnia alvei strain PCM_1220 chromosome, complete genome	4549364	1587621	1599185	4549364	tRNA	Escherichia_phage(62.5%)	10	NA	NA
QBJ32757.1|1587621_1588965_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	41.0	2.8e-80
QBJ32758.1|1589073_1590366_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	43.8	2.3e-92
QBJ32759.1|1590851_1593296_+	dimethylsulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.1	2.3e-213
QBJ32760.1|1593306_1593927_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	4.3e-76
QBJ32761.1|1593928_1594789_+	dimethylsulfoxide reductase	NA	A0A077SK59	Escherichia_phage	36.8	1.9e-26
QBJ32762.1|1594902_1595517_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	39.7	3.5e-30
QBJ32763.1|1595516_1596104_+	4Fe-4S dicluster domain-containing protein	NA	A0A077SLP0	Escherichia_phage	37.4	5.5e-25
QBJ32764.1|1596220_1597360_+	MFS transporter	NA	NA	NA	NA	NA
QBJ32765.1|1597435_1597891_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
QBJ32766.1|1598444_1599185_-	pyruvate formate lyase 1-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	26.5	8.0e-21
>prophage 3
CP036514	Hafnia alvei strain PCM_1220 chromosome, complete genome	4549364	1669472	1749351	4549364	protease,plate	uncultured_Caudovirales_phage(33.33%)	60	NA	NA
QBJ35277.1|1669472_1671050_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
QBJ35278.1|1671426_1671885_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
QBJ32815.1|1671988_1673044_-	porin OmpA	NA	NA	NA	NA	NA
QBJ32816.1|1673401_1673911_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
QBJ32817.1|1674132_1674756_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
QBJ32818.1|1674842_1676978_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
QBJ32819.1|1676989_1677436_-	YccF domain-containing protein	NA	NA	NA	NA	NA
QBJ32820.1|1677646_1679701_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	26.1	1.2e-18
QBJ32821.1|1679745_1680204_-	methylglyoxal synthase	NA	NA	NA	NA	NA
QBJ32822.1|1680308_1680818_-	DUF2057 domain-containing protein	NA	NA	NA	NA	NA
QBJ32823.1|1681019_1681436_+	CoA-binding protein	NA	NA	NA	NA	NA
QBJ32824.1|1681492_1681813_-	heat shock protein HspQ	NA	NA	NA	NA	NA
QBJ32825.1|1681970_1683164_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
QBJ32826.1|1683272_1683551_+	acylphosphatase	NA	NA	NA	NA	NA
QBJ32827.1|1683551_1683881_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
QBJ32828.1|1684066_1684729_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	48.1	8.1e-41
QBJ32829.1|1685852_1694699_+	DUF4573 domain-containing protein	NA	NA	NA	NA	NA
QBJ32830.1|1694798_1695794_-	glutaminase	NA	NA	NA	NA	NA
QBJ32831.1|1697479_1697797_-	DUF4387 domain-containing protein	NA	NA	NA	NA	NA
QBJ32832.1|1697793_1699167_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
QBJ32833.1|1699168_1700413_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
QBJ35279.1|1700412_1701858_-	methylaspartate mutase subunit E	NA	NA	NA	NA	NA
QBJ32834.1|1701872_1703264_-	glutamate mutase	NA	NA	NA	NA	NA
QBJ32835.1|1703260_1703707_-	methylaspartate mutase subunit S	NA	NA	NA	NA	NA
QBJ32836.1|1704310_1705171_-	GHMP kinase	NA	NA	NA	NA	NA
QBJ32837.1|1705257_1706040_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
QBJ32838.1|1706791_1708327_+	cobyric acid synthase	NA	NA	NA	NA	NA
QBJ32839.1|1708352_1709111_+	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA	NA
QBJ32840.1|1709133_1710198_+	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA	NA
QBJ32841.1|1710230_1711154_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ32842.1|1711316_1712963_+	fumarate hydratase	NA	NA	NA	NA	NA
QBJ32843.1|1712980_1713571_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
QBJ32844.1|1714135_1714780_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32845.1|1715736_1716237_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
QBJ32846.1|1716262_1717816_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
QBJ32847.1|1717834_1719184_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
QBJ32848.1|1719180_1719840_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
QBJ32849.1|1719852_1721562_+	OmpA family protein	NA	NA	NA	NA	NA
QBJ32850.1|1721649_1722141_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
QBJ32851.1|1722348_1725114_+	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	33.4	2.2e-92
QBJ32852.1|1725107_1727639_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.6	8.8e-19
QBJ32853.1|1727631_1729782_+	DUF3274 domain-containing protein	NA	A0A077K801	Ralstonia_phage	26.6	1.4e-36
QBJ32854.1|1729795_1730323_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32855.1|1730343_1730664_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32856.1|1731531_1732086_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32857.1|1732082_1732403_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32858.1|1732402_1732894_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32859.1|1733266_1734139_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32860.1|1734138_1734990_+	hypothetical protein	NA	A0A077K9W3	Ralstonia_phage	33.1	4.2e-05
QBJ32861.1|1735180_1735435_+	PAAR domain-containing protein	NA	NA	NA	NA	NA
QBJ32862.1|1735435_1736824_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ35280.1|1736825_1740146_+	type VI secretion protein VasK	NA	NA	NA	NA	NA
QBJ32863.1|1740452_1741424_+	formylglycine-generating enzyme family protein	NA	NA	NA	NA	NA
QBJ32864.1|1741446_1742418_+	formylglycine-generating enzyme family protein	NA	NA	NA	NA	NA
QBJ32865.1|1742585_1743662_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32866.1|1743898_1745491_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
QBJ32867.1|1745568_1747332_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
QBJ32868.1|1747295_1748381_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
QBJ32869.1|1748361_1748910_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
QBJ32870.1|1748913_1749351_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
>prophage 4
CP036514	Hafnia alvei strain PCM_1220 chromosome, complete genome	4549364	1763476	1809376	4549364	integrase,terminase,holin,head,coat	Cronobacter_phage(32.0%)	66	1763417:1763467	1809657:1809707
1763417:1763467	attL	ACTCTTAATCAATTGGTCGGCGGTTCGAACCCGCCACGACCCACCAACAAA	NA	NA	NA	NA
QBJ32880.1|1763476_1764640_-|integrase	site-specific integrase	integrase	G8C7S0	Escherichia_phage	66.2	2.1e-153
QBJ32881.1|1764516_1764870_-	DNA-binding protein	NA	K7P6W6	Enterobacteria_phage	45.6	7.4e-17
QBJ32882.1|1764866_1765064_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ32883.1|1765065_1765305_-	DUF4060 family protein	NA	NA	NA	NA	NA
QBJ32884.1|1765511_1765820_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ32885.1|1765820_1766108_-	hypothetical protein	NA	A0A077KAZ4	Edwardsiella_phage	42.6	3.7e-06
QBJ32886.1|1766941_1767163_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ32887.1|1767149_1767599_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ32888.1|1767598_1767784_-	hypothetical protein	NA	K7P7P5	Enterobacteria_phage	68.3	6.6e-17
QBJ32889.1|1767793_1768198_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ32890.1|1768198_1768879_-	exonuclease	NA	A0A0P0ZCD4	Stx2-converting_phage	60.2	7.7e-79
QBJ32891.1|1768875_1769790_-	recombinase RecT	NA	F1C5B8	Cronobacter_phage	73.1	3.3e-125
QBJ32892.1|1769786_1770074_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ32893.1|1770505_1771012_-	hypothetical protein	NA	G8C7T4	Escherichia_phage	48.8	1.1e-37
QBJ32894.1|1771142_1771490_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ32895.1|1771700_1771895_-	restriction endonuclease	NA	Q76H34	Enterobacteria_phage	56.7	1.4e-12
QBJ32896.1|1772006_1772636_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ32897.1|1772814_1773315_+	hypothetical protein	NA	K7PK22	Enterobacteria_phage	61.6	5.0e-51
QBJ32898.1|1773322_1773595_-	antitermination protein N	NA	A0A0N7C217	Escherichia_phage	70.0	1.9e-28
QBJ32899.1|1774099_1774777_-	helix-turn-helix domain-containing protein	NA	K7P7K3	Enterobacteria_phage	73.8	8.9e-59
QBJ32900.1|1774852_1775080_+	DNA-binding protein	NA	G9L677	Escherichia_phage	88.0	6.8e-32
QBJ32901.1|1775209_1775503_+	hypothetical protein	NA	I6RSP4	Salmonella_phage	63.9	1.2e-23
QBJ32902.1|1775529_1776357_+	DNA-binding protein	NA	A0A2H4J902	uncultured_Caudovirales_phage	77.9	1.7e-112
QBJ32903.1|1776419_1777358_+	replication protein	NA	A5VW95	Enterobacteria_phage	77.2	5.9e-53
QBJ32904.1|1777354_1778062_+	DNA replication protein	NA	A0A2H4J1B6	uncultured_Caudovirales_phage	55.4	2.4e-62
QBJ32905.1|1778058_1778253_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32906.1|1778255_1778492_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32907.1|1778484_1778769_+	hypothetical protein	NA	A0A077KAZ4	Edwardsiella_phage	87.4	9.8e-36
QBJ32908.1|1778768_1778957_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32909.1|1778959_1779415_+	recombination protein NinB	NA	A0A0P0ZEG6	Stx2-converting_phage	51.0	5.2e-39
QBJ32910.1|1779411_1779642_+	hypothetical protein	NA	R9TRD3	Aeromonas_phage	67.7	3.3e-18
QBJ32911.1|1779802_1780000_+	hypothetical protein	NA	K7PJT9	Enterobacteria_phage	41.5	7.8e-08
QBJ32912.1|1780002_1780293_+	DUF1364 domain-containing protein	NA	A0A2H4JIC4	uncultured_Caudovirales_phage	80.0	5.1e-40
QBJ32913.1|1780289_1780652_+	RusA family crossover junction endodeoxyribonuclease	NA	E5AGG1	Erwinia_phage	71.4	1.1e-42
QBJ32914.1|1781006_1781777_+	antitermination protein	NA	Q76H66	Enterobacteria_phage	68.9	5.5e-89
QBJ32915.1|1782175_1782391_+|holin	holin	holin	H9C183	Pectobacterium_phage	77.1	4.5e-25
QBJ32916.1|1782390_1782879_+	lysozyme	NA	A0A2H4FND7	Salmonella_phage	77.2	8.9e-69
QBJ32917.1|1782875_1783241_+	DUF2570 domain-containing protein	NA	A0A192Y6H8	Salmonella_phage	47.6	1.2e-17
QBJ32918.1|1783137_1783395_+	peptidase	NA	S5FXQ4	Shigella_phage	60.8	1.2e-16
QBJ32919.1|1783809_1784016_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32920.1|1784067_1784454_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ32921.1|1784548_1785067_+|terminase	terminase small subunit	terminase	I6PDJ6	Cronobacter_phage	72.6	6.5e-62
QBJ32922.1|1785066_1786542_+|terminase	terminase	terminase	A0A1W6JNY3	Morganella_phage	84.7	1.6e-254
QBJ32923.1|1786552_1788019_+	DUF1073 domain-containing protein	NA	F1C5D7	Cronobacter_phage	62.6	1.3e-171
QBJ35282.1|1788050_1788953_+|head	phage head morphogenesis protein	head	F1C5D8	Cronobacter_phage	70.5	2.0e-119
QBJ32924.1|1788999_1789194_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32925.1|1789264_1790608_+	DUF2213 domain-containing protein	NA	F1C5D9	Cronobacter_phage	58.0	2.6e-142
QBJ32926.1|1790614_1791046_+	hypothetical protein	NA	F1C5E0	Cronobacter_phage	72.0	2.5e-51
QBJ32927.1|1791057_1792149_+|coat	phage coat protein	coat	F1C5E1	Cronobacter_phage	69.4	1.3e-141
QBJ32928.1|1792160_1792427_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ32929.1|1792429_1792810_+	hypothetical protein	NA	F1C5E2	Cronobacter_phage	55.3	2.4e-29
QBJ32930.1|1792976_1793321_+	hypothetical protein	NA	A0A0M3LSC9	Mannheimia_phage	55.8	7.5e-30
QBJ32931.1|1793322_1793694_+	HK97 gp10 family phage protein	NA	G0ZNE3	Cronobacter_phage	57.7	3.7e-35
QBJ32932.1|1793690_1794071_+	hypothetical protein	NA	F1C5E4	Cronobacter_phage	38.9	8.6e-19
QBJ32933.1|1794139_1794892_+	Ig domain-containing protein	NA	A0A1W6JNT1	Morganella_phage	52.5	4.3e-54
QBJ32934.1|1794947_1795655_+	hypothetical protein	NA	A0A1W6JNX2	Morganella_phage	62.7	7.3e-80
QBJ32935.1|1795700_1799081_+	hypothetical protein	NA	Q5G8W8	Enterobacteria_phage	43.2	1.1e-157
QBJ32936.1|1799082_1799580_+	hypothetical protein	NA	F1C5F0	Cronobacter_phage	64.6	4.2e-58
QBJ32937.1|1799579_1800050_+	DUF1833 domain-containing protein	NA	F1C5F1	Cronobacter_phage	54.5	7.3e-44
QBJ32938.1|1800053_1800485_+	peptidoglycan endopeptidase	NA	F1C5F2	Cronobacter_phage	65.6	1.0e-44
QBJ32939.1|1800563_1802897_+	MoaD/ThiS family protein	NA	F1C5A7	Cronobacter_phage	54.3	1.2e-243
QBJ32940.1|1804961_1806296_-	hypothetical protein	NA	U5P0I5	Shigella_phage	37.1	3.4e-70
QBJ32941.1|1806292_1807219_-	glycosyltransferase	NA	F1C5B0	Cronobacter_phage	83.1	1.7e-145
QBJ32942.1|1807215_1807581_-	GtrA family protein	NA	F1C5B1	Cronobacter_phage	67.5	2.9e-40
QBJ32943.1|1807822_1808200_+	hypothetical protein	NA	Q6UAV9	Klebsiella_phage	48.0	4.6e-25
QBJ35283.1|1808311_1809376_-	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	46.3	3.3e-07
1809657:1809707	attR	ACTCTTAATCAATTGGTCGGCGGTTCGAACCCGCCACGACCCACCAACAAA	NA	NA	NA	NA
>prophage 5
CP036514	Hafnia alvei strain PCM_1220 chromosome, complete genome	4549364	2166541	2180441	4549364	tRNA	Tupanvirus(33.33%)	14	NA	NA
QBJ33240.1|2166541_2168479_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.7	1.6e-129
QBJ33241.1|2168474_2169017_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.7	8.8e-17
QBJ33242.1|2169115_2169313_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
QBJ33243.1|2169355_2169712_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
QBJ35308.1|2169842_2169887_+	pheST operon leader peptide PheM	NA	NA	NA	NA	NA
QBJ33244.1|2170178_2171162_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.0	1.7e-34
QBJ33245.1|2171176_2173564_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	28.9	6.6e-08
QBJ33246.1|2173568_2173865_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	3.2e-13
QBJ33247.1|2173948_2174146_+	protein DsrB	NA	NA	NA	NA	NA
QBJ33248.1|2174204_2175230_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA	NA
QBJ35309.1|2175232_2176018_+	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	A0A2K9L407	Tupanvirus	24.8	7.5e-09
QBJ33249.1|2176301_2177450_+	UDP-4-amino-4-deoxy-L-arabinose aminotransferase	NA	C7U074	Ostreococcus_tauri_virus	27.8	1.2e-23
QBJ33250.1|2177442_2178459_+	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	NA	A8CG95	Salmonella_phage	33.9	1.5e-38
QBJ33251.1|2178458_2180441_+	bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	NA	A0A2K9KZK0	Tupanvirus	25.4	9.6e-21
>prophage 6
CP036514	Hafnia alvei strain PCM_1220 chromosome, complete genome	4549364	2966012	3042719	4549364	portal,capsid,terminase,tRNA,holin,protease,head,tail	Enterobacteria_phage(20.59%)	82	NA	NA
QBJ35344.1|2966012_2966816_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
QBJ33913.1|2966875_2967886_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
QBJ33914.1|2968130_2969258_-	4-phosphoerythronate dehydrogenase PdxB	NA	A0A2R8FDS8	Brazilian_cedratvirus	28.2	1.8e-19
QBJ33915.1|2969376_2970153_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QBJ33916.1|2970305_2971235_+	DMT family transporter	NA	NA	NA	NA	NA
QBJ33917.1|2971841_2972342_-	protein disulfide oxidoreductase	NA	NA	NA	NA	NA
QBJ35345.1|2972338_2973082_-	DsbA family protein	NA	NA	NA	NA	NA
QBJ33918.1|2973110_2975138_-	DUF255 domain-containing protein	NA	NA	NA	NA	NA
QBJ33919.1|2975190_2975568_-	copper resistance protein	NA	NA	NA	NA	NA
QBJ33920.1|2975770_2976136_+	DUF4186 domain-containing protein	NA	NA	NA	NA	NA
QBJ35346.1|2976304_2976742_+	acid resistance repetitive basic protein Asr	NA	NA	NA	NA	NA
QBJ33921.1|2977420_2977819_-	VOC family protein	NA	NA	NA	NA	NA
QBJ33922.1|2978035_2978257_+	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
QBJ33923.1|2978321_2979536_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA	NA
QBJ33924.1|2979709_2981728_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
QBJ33925.1|2981870_2982146_-	YfcL family protein	NA	NA	NA	NA	NA
QBJ33926.1|2982164_2982710_-	elongation factor P hydroxylase	NA	NA	NA	NA	NA
QBJ33927.1|2982967_2983780_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ33928.1|2984125_2984863_+	amino acid racemase	NA	NA	NA	NA	NA
QBJ33929.1|2984845_2985742_-	hypochlorite stress DNA-binding transcriptional regulator HypT	NA	NA	NA	NA	NA
QBJ33930.1|2985820_2986984_-	beta-aspartyl-peptidase	NA	NA	NA	NA	NA
QBJ33931.1|2986997_2987462_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ33932.1|2987465_2988146_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ35347.1|2988435_2989263_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA	NA
QBJ33933.1|2989309_2990395_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	46.6	3.2e-87
QBJ33934.1|2990533_2991466_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
QBJ33935.1|2991708_2992251_+	endonuclease SmrB	NA	NA	NA	NA	NA
QBJ33936.1|2992313_2992796_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA	NA
QBJ33937.1|2993174_2995322_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA	NA
QBJ33938.1|2995321_2996650_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA	NA
QBJ33939.1|2997007_2997304_-	DUF406 family protein	NA	NA	NA	NA	NA
QBJ33940.1|2997708_2999031_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA	NA
QBJ33941.1|2999148_2999910_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA	NA
QBJ33942.1|3000032_3001244_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA	NA
QBJ33943.1|3001246_3001732_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA	NA
QBJ33944.1|3001731_3002283_-	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA	NA
QBJ33945.1|3004248_3004755_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA	NA
QBJ33946.1|3004751_3004991_-	heme exporter protein CcmD	NA	NA	NA	NA	NA
QBJ33947.1|3004990_3005746_-	heme ABC transporter permease	NA	NA	NA	NA	NA
QBJ33948.1|3005954_3006614_-	heme exporter protein CcmB	NA	NA	NA	NA	NA
QBJ33949.1|3006610_3007231_-	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	G3M9Y6	Bacillus_virus	31.5	7.2e-15
QBJ33950.1|3007834_3008998_+	DUF4102 domain-containing protein	NA	Q716F9	Shigella_phage	80.5	2.1e-180
QBJ33951.1|3009543_3010308_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ33952.1|3010294_3011176_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ33953.1|3011423_3012068_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ33954.1|3012223_3013489_-	hypothetical protein	NA	K7P7M2	Enterobacteria_phage	38.8	1.2e-69
QBJ33955.1|3013534_3014197_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ33956.1|3014198_3014498_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ33957.1|3014497_3017785_-	host specificity protein J	NA	Q9MCU0	Escherichia_phage	58.4	0.0e+00
QBJ33958.1|3017835_3018462_-|tail	tail assembly protein	tail	F1C572	Cronobacter_phage	50.5	9.7e-44
QBJ33959.1|3018507_3018849_-	hypothetical protein	NA	K7PLP0	Enterobacteria_phage	56.6	5.1e-31
QBJ33960.1|3018891_3019605_-	peptidase P60	NA	K7PGR2	Enterobacteria_phage	76.6	1.2e-109
QBJ33961.1|3019606_3020356_-|tail	phage minor tail protein L	tail	K7P7D8	Enterobacteria_phage	70.2	1.0e-100
QBJ33962.1|3020352_3020691_-|tail	phage tail protein	tail	K7P7R1	Enterobacteria_phage	69.6	1.7e-42
QBJ33963.1|3020690_3023684_-|tail	phage tail tape measure protein	tail	K7PM62	Enterobacteria_phage	34.2	1.1e-39
QBJ33964.1|3023680_3023896_-	hypothetical protein	NA	Q6UAW9	Klebsiella_phage	51.4	6.3e-11
QBJ33965.1|3023919_3024267_-|tail	phage tail protein	tail	Q6UAW8	Klebsiella_phage	45.5	2.6e-14
QBJ33966.1|3024312_3024597_-|tail	phage tail protein	tail	Q7Y402	Yersinia_phage	52.1	5.1e-16
QBJ33967.1|3024572_3025031_-|tail	phage tail protein	tail	Q7Y403	Yersinia_phage	74.8	2.4e-60
QBJ33968.1|3025066_3025474_-	hypothetical protein	NA	Q6UAX1	Klebsiella_phage	67.7	2.9e-41
QBJ33969.1|3025470_3025860_-	hypothetical protein	NA	Q7Y405	Yersinia_phage	46.8	3.2e-29
QBJ33970.1|3025840_3026185_-|head,tail	head-tail adaptor protein	head,tail	Q7Y406	Yersinia_phage	58.9	1.6e-27
QBJ33971.1|3026181_3026475_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1W6JNZ5	Morganella_phage	58.8	4.3e-26
QBJ33972.1|3026563_3027790_-|capsid	phage major capsid protein	capsid	Q8SBH8	Shigella_phage	77.1	7.2e-176
QBJ33973.1|3027800_3028403_-|head,protease	HK97 family phage prohead protease	head,protease	Q8SBH9	Shigella_phage	80.9	3.9e-90
QBJ33974.1|3028395_3029610_-|portal	phage portal protein	portal	Q8SBI0	Shigella_phage	84.1	9.6e-197
QBJ33975.1|3029757_3031479_-|terminase	terminase large subunit	terminase	A0A1J0GUY5	Halomonas_phage	62.4	7.9e-221
QBJ33976.1|3031481_3031937_-|terminase	P27 family phage terminase small subunit	terminase	A0A1J0GV10	Halomonas_phage	51.7	1.9e-25
QBJ33977.1|3032060_3032411_-	HNH endonuclease	NA	A0A1W6JP27	Morganella_phage	75.4	7.3e-49
QBJ35348.1|3032577_3032847_+	DUF1883 domain-containing protein	NA	NA	NA	NA	NA
QBJ33978.1|3032805_3033003_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
QBJ33979.1|3033381_3033915_-	DUF2514 family protein	NA	NA	NA	NA	NA
QBJ33980.1|3033911_3034526_-	glycoside hydrolase family 19 protein	NA	A0A192Y6G4	Salmonella_phage	82.4	2.7e-91
QBJ33981.1|3034535_3034868_-|holin	phage holin, lambda family	holin	Q2A0C6	Sodalis_phage	42.2	7.5e-19
QBJ33982.1|3036101_3036395_+	DUF1883 domain-containing protein	NA	NA	NA	NA	NA
QBJ33983.1|3036835_3037615_-	antitermination protein	NA	F1C595	Cronobacter_phage	51.6	9.5e-73
QBJ33984.1|3037611_3038496_-	helix-turn-helix domain-containing protein	NA	F1C596	Cronobacter_phage	54.4	1.7e-78
QBJ33985.1|3038471_3039446_-	DNA primase	NA	A0A286N2Q0	Klebsiella_phage	60.1	2.1e-109
QBJ33986.1|3039442_3041062_-	DEAD/DEAH box helicase	NA	A0A286N2P9	Klebsiella_phage	74.6	6.7e-230
QBJ35349.1|3041432_3041690_-	hypothetical protein	NA	A0A1B5FPB9	Escherichia_phage	54.1	2.2e-18
QBJ35350.1|3041727_3041919_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ33987.1|3042041_3042719_+	helix-turn-helix domain-containing protein	NA	K7P850	Enterobacteria_phage	57.0	1.5e-58
