assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004328765.1_ASM432876v1	CP025280	Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60983 chromosome, complete genome	2	986430-986904	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,PD-DExK,WYL,csa3,RT,DEDDh,DinG,cas14j	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	1	1	986459-986490	CP025280.1_2680491-2680460	I-E:I-E:I-E	6,7,7	7	Unclear	cas3,PD-DExK,WYL,csa3,RT,DEDDh,DinG,cas14j	NA,NA|57aa|down_2|CP025280.1_988177_988348_+	NA|381aa|up_9|CP025280.1_972342_973485_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|CP025280.1_973528_976285_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|CP025280.1_976342_977638_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|CP025280.1_977689_979924_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|CP025280.1_980008_980365_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|CP025280.1_980330_980627_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|CP025280.1_981382_982183_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP025280.1_982410_984048_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP025280.1_984130_985429_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP025280.1_985564_986236_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP025280.1_987001_987799_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP025280.1_987886_988249_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP025280.1_988177_988348_+	NA	NA|600aa|down_3|CP025280.1_988684_990484_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP025280.1_990483_992196_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP025280.1_992271_993006_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|CP025280.1_993093_994047_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|526aa|down_7|CP025280.1_994430_996008_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|349aa|down_8|CP025280.1_996124_997171_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_9|CP025280.1_997421_998330_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD
GCA_004328765.1_ASM432876v1	CP025280	Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60983 chromosome, complete genome	3	996021-996108	3	CRISPRCasFinder	no	cas3	cas3,PD-DExK,WYL,csa3,RT,DEDDh,DinG,cas14j	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAAC	27	0	0	NA	NA	I-E	1	1	Unclear	cas3,PD-DExK,WYL,csa3,RT,DEDDh,DinG,cas14j	NA|57aa|up_5|CP025280.1_988177_988348_+,NA	NA|433aa|up_9|CP025280.1_984130_985429_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_8|CP025280.1_985564_986236_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|up_7|CP025280.1_987001_987799_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|up_6|CP025280.1_987886_988249_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|up_5|CP025280.1_988177_988348_+	NA	NA|600aa|up_4|CP025280.1_988684_990484_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|CP025280.1_990483_992196_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|CP025280.1_992271_993006_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_1|CP025280.1_993093_994047_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|526aa|up_0|CP025280.1_994430_996008_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|349aa|down_0|CP025280.1_996124_997171_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP025280.1_997421_998330_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP025280.1_998339_999779_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP025280.1_999765_1000371_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP025280.1_1000388_1000745_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP025280.1_1000935_1001247_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP025280.1_1001265_1001976_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP025280.1_1001975_1002455_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP025280.1_1002451_1003501_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP025280.1_1003481_1004243_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
