The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LT985476	Listeria monocytogenes isolate LMNC088 complete genome genome assembly, chromosome: 1	2935970	1135568	1142990	2935970		Hokovirus(33.33%)	8	NA	NA
SPE85335.1|1135568_1135952_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
SPE85337.1|1135973_1136957_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	34.6	4.1e-12
SPE85339.1|1136971_1137985_+	glysosyltransferase	NA	A0A1V0SAH6	Catovirus	32.0	6.0e-11
SPE85341.1|1138193_1139684_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
SPE85343.1|1139695_1140520_+	NAD synthetase	NA	G3MA24	Bacillus_virus	52.6	9.7e-68
SPE85345.1|1140532_1140841_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
SPE85347.1|1140900_1141305_+	PTS cellbiose transporter subunit IIB	NA	NA	NA	NA	NA
SPE85349.1|1141445_1142990_+	GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	1.7e-17
>prophage 2
LT985476	Listeria monocytogenes isolate LMNC088 complete genome genome assembly, chromosome: 1	2935970	1285637	1345080	2935970	tRNA,protease,integrase	Bacillus_virus(16.67%)	58	1294603:1294619	1331519:1331535
SPE85684.1|1285637_1286777_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
SPE85686.1|1286857_1287253_-	transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
SPE85688.1|1287403_1287619_+	transcriptional regulator	NA	NA	NA	NA	NA
SPE85690.1|1287737_1288271_+	hypothetical protein	NA	NA	NA	NA	NA
SPE85692.1|1288288_1288954_+	hypothetical protein	NA	NA	NA	NA	NA
SPE85694.1|1289215_1290154_+	hypothetical protein	NA	NA	NA	NA	NA
SPE85696.1|1290268_1291552_+	trigger factor	NA	NA	NA	NA	NA
SPE85698.1|1291738_1292998_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
SPE85700.1|1293116_1293683_+	type I signal peptidase	NA	NA	NA	NA	NA
SPE85702.1|1293717_1294287_+	type I signal peptidase	NA	NA	NA	NA	NA
SPE85704.1|1294388_1294931_+	type I signal peptidase	NA	NA	NA	NA	NA
1294603:1294619	attL	GAAAAGAATACATCAAG	NA	NA	NA	NA
SPE85706.1|1294940_1295804_+	ribosomal biogenesis GTPase	NA	NA	NA	NA	NA
SPE85709.1|1295800_1296586_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
SPE85711.1|1296719_1297580_+	polypeptide deformylase	NA	NA	NA	NA	NA
SPE85713.1|1297851_1299930_+	DNA topoisomerase I	NA	A0A1V0SB35	Catovirus	37.5	3.2e-107
SPE85715.1|1299992_1301297_+|tRNA	tRNA (uracil-5-)-methyltransferase Gid	tRNA	NA	NA	NA	NA
SPE85717.1|1301579_1302482_+|integrase	integrase/recombinase	integrase	A0A097EYL9	Mycobacterium_phage	28.6	1.2e-13
SPE85719.1|1302502_1303042_+|protease	ATP-dependent protease peptidase subunit	protease	NA	NA	NA	NA
SPE85721.1|1303055_1304465_+|protease	ATP-dependent protease ATP-binding subunit HslU	protease	W6AS21	Erwinia_phage	27.7	4.9e-43
SPE85723.1|1304485_1305265_+	transcriptional repressor CodY	NA	NA	NA	NA	NA
SPE85725.1|1305367_1305787_+	Putative esterase	NA	NA	NA	NA	NA
SPE85727.1|1305809_1306121_+	hypothetical protein	NA	NA	NA	NA	NA
SPE85729.1|1306123_1306996_+	LacX protein	NA	NA	NA	NA	NA
SPE85731.1|1307037_1307634_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SPE85733.1|1307791_1308199_+	CoA-binding protein	NA	NA	NA	NA	NA
SPE85735.1|1308379_1310347_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.5	6.7e-123
SPE85737.1|1310343_1312803_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.6	4.7e-102
SPE85739.1|1312885_1313353_+	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
SPE85741.1|1313679_1315413_+	internalin	NA	NA	NA	NA	NA
SPE85743.1|1315744_1317541_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
SPE85745.1|1317574_1319443_-	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	31.9	6.5e-43
SPE85747.1|1319655_1320354_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	32.4	1.3e-12
SPE85749.1|1320586_1322263_+	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SPE85751.1|1322388_1323306_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SPE85753.1|1323428_1323662_+	host factor-1 protein	NA	NA	NA	NA	NA
SPE85754.1|1323772_1324996_+	GTPase HflX	NA	NA	NA	NA	NA
SPE85757.1|1324988_1326215_+	aluminum resistance protein	NA	NA	NA	NA	NA
SPE85758.1|1326418_1326787_+	glutamine synthetase repressor	NA	NA	NA	NA	NA
SPE85760.1|1326857_1328192_+	glutamine synthetase	NA	A0A1V0SJ53	Klosneuvirus	26.4	2.0e-06
SPE85762.1|1328335_1329631_+	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	61.6	1.8e-145
SPE85764.1|1329674_1330196_-	N-acetyltransferase	NA	NA	NA	NA	NA
SPE85766.1|1330225_1330840_-	LexA family transcriptional regulator	NA	A0A1B2APZ1	Phage_Wrath	62.1	9.3e-15
SPE85768.1|1330997_1331327_+	cell division suppressor	NA	NA	NA	NA	NA
SPE85770.1|1331418_1331646_+	hypothetical protein	NA	NA	NA	NA	NA
1331519:1331535	attR	GAAAAGAATACATCAAG	NA	NA	NA	NA
SPE85772.1|1331792_1333787_+	transketolase	NA	NA	NA	NA	NA
SPE85774.1|1334007_1334247_+	hypothetical protein	NA	NA	NA	NA	NA
SPE85776.1|1334297_1335140_-	hypothetical protein	NA	NA	NA	NA	NA
SPE85778.1|1335158_1335890_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	59.1	1.2e-80
SPE85780.1|1335911_1336418_-	chromosome partitioning protein ParB	NA	A0A220GKT8	Streptococcus_phage	66.7	4.0e-56
SPE85781.1|1336427_1337732_-	phosphoadenosine phosphosulfate sulfurtransferase	NA	A0A220GKF8	Streptococcus_phage	52.1	9.5e-134
SPE85784.1|1337721_1338921_-	helicase SNF2	NA	L0P6E9	Lactobacillus_phage	47.1	3.7e-92
SPE85786.1|1338904_1339279_-	hypothetical protein	NA	NA	NA	NA	NA
SPE85788.1|1339571_1340300_+	uridylate kinase	NA	NA	NA	NA	NA
SPE85790.1|1340299_1340857_+	ribosome recycling factor	NA	NA	NA	NA	NA
SPE85792.1|1341086_1341845_+	UDP pyrophosphate synthase	NA	R9W0U9	Flavobacterium_phage	41.4	7.4e-22
SPE85794.1|1341858_1342647_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SPE85796.1|1342661_1343804_+	1-deoxy-D-xylulose 5-phosphate reductoisomerase	NA	NA	NA	NA	NA
SPE85797.1|1343817_1345080_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 3
LT985476	Listeria monocytogenes isolate LMNC088 complete genome genome assembly, chromosome: 1	2935970	1832265	1840551	2935970		Synechococcus_phage(33.33%)	8	NA	NA
SPE87077.1|1832265_1832832_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
SPE87079.1|1832828_1833878_-	phosphoribosylaminoimidazole synthetase	NA	Q58MH8	Prochlorococcus_phage	43.2	3.0e-61
SPE87081.1|1833896_1835324_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
SPE87083.1|1835308_1837528_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	41.1	6.5e-159
SPE87085.1|1837520_1838204_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
SPE87087.1|1838207_1838453_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
SPE87089.1|1838464_1839178_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	37.8	5.1e-41
SPE87091.1|1839258_1840551_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
>prophage 4
LT985476	Listeria monocytogenes isolate LMNC088 complete genome genome assembly, chromosome: 1	2935970	2499353	2507197	2935970		Streptococcus_phage(50.0%)	7	NA	NA
SPE87771.1|2499353_2500325_-	sporulation regulator WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	1.5e-51
SPE87772.1|2500332_2501301_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
SPE87773.1|2501302_2502178_-	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	3.2e-08
SPE87774.1|2502285_2504016_-	phosphoglucomutase	NA	A0A1X9I671	Streptococcus_phage	53.3	3.3e-174
SPE87775.1|2504057_2505050_-	aldose 1-epimerase	NA	NA	NA	NA	NA
SPE87776.1|2505135_2506119_-	UDP-glucose 4-epimerase	NA	A0A2K9L1R4	Tupanvirus	37.2	2.6e-51
SPE87777.1|2506237_2507197_-	thioredoxin reductase	NA	G3MA85	Bacillus_virus	53.4	2.9e-87
>prophage 5
LT985476	Listeria monocytogenes isolate LMNC088 complete genome genome assembly, chromosome: 1	2935970	2627515	2665681	2935970	holin,integrase	Listeria_phage(94.23%)	58	2617332:2617345	2666245:2666258
2617332:2617345	attL	TTTCCGAAGAAATG	NA	NA	NA	NA
SPE87893.1|2627515_2627749_+	hypothetical protein	NA	A8ATW9	Listeria_phage	100.0	4.3e-13
SPE87894.1|2627780_2628032_+	hypothetical protein	NA	A8ATW8	Listeria_phage	100.0	2.0e-40
SPE87895.1|2628032_2628482_+	protein gp28	NA	A8ATW7	Listeria_phage	100.0	2.4e-76
SPE87896.1|2628506_2629004_+	hypothetical protein	NA	A8ATW6	Listeria_phage	100.0	3.8e-91
SPE87897.1|2629263_2630052_+	hypothetical protein	NA	A8ATW5	Listeria_phage	100.0	4.2e-153
SPE87898.1|2630092_2630938_-	L-alanoyl-D-glutamate peptidase	NA	A0A059T7Y8	Listeria_phage	94.7	2.7e-137
SPE87899.1|2630937_2631219_-|holin	holin	holin	A8ASL4	Listeria_phage	94.6	3.4e-41
SPE87900.1|2631231_2631597_-	protein gp23	NA	Q9T1A0	Listeria_phage	100.0	7.4e-12
SPE87901.1|2631635_2633801_-	hypothetical protein	NA	A8ATW1	Listeria_phage	94.5	0.0e+00
SPE87902.1|2633813_2635382_-	hypothetical protein	NA	A8ATW0	Listeria_phage	99.2	1.5e-303
SPE87903.1|2635378_2640169_-	tape-measure	NA	A8ATV9	Listeria_phage	94.9	0.0e+00
SPE87904.1|2640173_2640377_-	hypothetical protein	NA	A8ATV8	Listeria_phage	100.0	2.8e-29
SPE87905.1|2640481_2640913_-	hypothetical protein	NA	A8ATV7	Listeria_phage	95.8	1.1e-70
SPE87906.1|2640968_2641655_-	protein gp13	NA	A8ATV6	Listeria_phage	97.4	3.4e-114
SPE87907.1|2641659_2642031_-	hypothetical protein	NA	A0A0B5CTY4	Listeria_phage	97.6	3.6e-62
SPE87908.1|2642027_2642345_-	hypothetical protein	NA	A8ATV4	Listeria_phage	98.1	1.9e-51
SPE87909.1|2642334_2642700_-	hypothetical protein	NA	A8ATV3	Listeria_phage	97.5	2.4e-63
SPE87910.1|2642699_2643053_-	hypothetical protein	NA	A8ATV2	Listeria_phage	100.0	7.6e-62
SPE87911.1|2643053_2643221_-	hypothetical protein	NA	A8ATV1	Listeria_phage	100.0	1.7e-11
SPE87912.1|2643240_2644113_-	hypothetical protein	NA	A8ATV0	Listeria_phage	99.3	3.6e-161
SPE87913.1|2644135_2644690_-	hypothetical protein	NA	A8ATU9	Listeria_phage	97.3	1.5e-85
SPE87914.1|2644785_2645829_-	protein gp4	NA	A0A0B5D111	Listeria_phage	98.6	2.6e-198
SPE87915.1|2645833_2647390_-	hypothetical protein	NA	A8ATU7	Listeria_phage	99.0	5.0e-299
SPE87916.1|2647404_2648718_-	hypothetical protein	NA	A8ATU6	Listeria_phage	88.5	2.4e-233
SPE87917.1|2648662_2649448_-	hypothetical protein	NA	A0A0B5CTX0	Listeria_phage	96.7	3.2e-129
SPE87918.1|2649487_2649715_-	hypothetical protein	NA	A8AU06	Listeria_phage	100.0	1.5e-34
SPE87919.1|2649795_2650428_-	hypothetical protein	NA	A8AU05	Listeria_phage	99.0	4.0e-114
SPE87920.1|2650609_2651044_-	transcriptional regulator	NA	A8ASQ1	Listeria_phage	97.9	8.1e-74
SPE87921.1|2651062_2651227_-	hypothetical protein	NA	A8ASQ0	Listeria_phage	92.6	5.7e-20
SPE87922.1|2651237_2651363_-	hypothetical protein	NA	A0A0B5D0J6	Listeria_phage	97.6	1.3e-13
SPE87923.1|2651355_2651739_-	hypothetical protein	NA	A0A0B5CYS3	Listeria_phage	97.6	2.0e-63
SPE87924.1|2651742_2652147_-	hypothetical protein	NA	A8ASP7	Listeria_phage	88.8	2.1e-60
SPE87925.1|2652091_2652274_-	hypothetical protein	NA	A8ASP6	Listeria_phage	82.5	1.5e-18
SPE87926.1|2652292_2652775_-	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	92.5	6.7e-77
SPE87927.1|2652771_2653095_-	hypothetical protein	NA	A8ATZ5	Listeria_phage	89.7	2.0e-08
SPE87928.1|2653094_2653283_-	hypothetical protein	NA	NA	NA	NA	NA
SPE87929.1|2653279_2653483_-	hypothetical protein	NA	NA	NA	NA	NA
SPE87930.1|2653482_2653668_-	hypothetical protein	NA	A0A059T654	Listeria_phage	91.8	5.4e-27
SPE87931.1|2653667_2653958_-	hypothetical protein	NA	Q8W5X0	Listeria_phage	88.5	1.1e-42
SPE87932.1|2654016_2654385_-	hypothetical protein	NA	A8ASN9	Listeria_phage	91.8	1.1e-60
SPE87933.1|2654381_2654945_-	hypothetical protein	NA	A8ATY9	Listeria_phage	50.8	3.7e-42
SPE87934.1|2654941_2656255_-	5-methylcytosine methyltransferase	NA	A0A141E1L1	Streptococcus_phage	57.1	1.1e-129
SPE87935.1|2656251_2657166_-	hypothetical protein	NA	A0A0B5D175	Listeria_phage	90.5	8.1e-140
SPE87936.1|2657203_2658115_-	hypothetical protein	NA	NA	NA	NA	NA
SPE87937.1|2658107_2659619_-	DNA replication and repair protein RecF	NA	A0A2I7SC81	Paenibacillus_phage	36.2	2.7e-76
SPE87938.1|2659836_2659926_-	hypothetical protein	NA	A8ATY4	Listeria_phage	96.6	1.2e-08
SPE87939.1|2659925_2660114_-	hypothetical protein	NA	Q9T175	Listeria_phage	82.3	1.8e-22
SPE87940.1|2660216_2660423_-	hypothetical protein	NA	NA	NA	NA	NA
SPE87941.1|2660412_2660943_-	hypothetical protein	NA	A0A0B5D173	Listeria_phage	88.4	6.7e-78
SPE87942.1|2661066_2661846_-	anti-repressor	NA	A0A0B5CTU1	Listeria_phage	96.5	5.8e-139
SPE87943.1|2661858_2662134_-	hypothetical protein	NA	A8ASM5	Listeria_phage	85.1	4.9e-40
SPE87944.1|2662130_2662367_-	hypothetical protein	NA	A0A059T5E9	Listeria_phage	96.2	8.1e-36
SPE87945.1|2662387_2662591_-	repressor protein	NA	NA	NA	NA	NA
SPE87946.1|2662766_2663072_+	repressor C1	NA	A0A059T669	Listeria_phage	64.3	4.0e-27
SPE87947.1|2663102_2663594_+	toxin	NA	A8ATX4	Listeria_phage	99.4	2.9e-91
SPE87948.1|2663616_2663835_+	hypothetical protein	NA	A0A059T6E3	Listeria_phage	95.8	1.3e-32
SPE87949.1|2663849_2664455_+	hypothetical protein	NA	NA	NA	NA	NA
SPE87950.1|2664517_2665681_+|integrase	integrase	integrase	S5MNZ2	Brevibacillus_phage	31.2	4.4e-50
2666245:2666258	attR	TTTCCGAAGAAATG	NA	NA	NA	NA
>prophage 6
LT985476	Listeria monocytogenes isolate LMNC088 complete genome genome assembly, chromosome: 1	2935970	2828639	2838671	2935970		Tupanvirus(33.33%)	7	NA	NA
SPE88120.1|2828639_2830793_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	34.1	1.7e-42
SPE88121.1|2830816_2832589_-	ATP-dependent DNA helicase	NA	A0A2K9L3P7	Tupanvirus	37.1	6.3e-80
SPE88122.1|2832749_2834216_-	inosine-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.0	8.0e-97
SPE88123.1|2834503_2835034_-	O-acetyl-ADP-ribose deacetylase	NA	A0A0K1L687	Scale_drop_disease_virus	49.3	1.7e-28
SPE88124.1|2835091_2836702_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.7	1.3e-47
SPE88125.1|2836868_2836979_-	hypothetical protein	NA	NA	NA	NA	NA
SPE88126.1|2837216_2838671_+	beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	30.1	7.3e-50
