assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900292015.1_MB901379	LR130759	Mycobacterium sp. DSM 104308 isolate 901379 genome assembly, chromosome: I	5	1423947-1424027	4	CRISPRCasFinder	no		csa3,cas3,WYL,cas4,DEDDh,DinG,casR	Orphan	AGCCCTGCGACGATGCCGCCCGCG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,cas4,DEDDh,DinG,casR	NA|70aa|up_7|LR130759.1_1412655_1412865_-,NA|282aa|up_6|LR130759.1_1413189_1414035_+,NA|53aa|down_1|LR130759.1_1426305_1426464_+,NA|122aa|down_4|LR130759.1_1429079_1429445_+,NA|555aa|down_7|LR130759.1_1431880_1433545_+,NA|58aa|down_8|LR130759.1_1433723_1433897_+	NA|103aa|up_9|LR130759.1_1411502_1411811_-	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|262aa|up_8|LR130759.1_1411813_1412599_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|70aa|up_7|LR130759.1_1412655_1412865_-	NA	NA|282aa|up_6|LR130759.1_1413189_1414035_+	NA	NA|1054aa|up_5|LR130759.1_1414153_1417315_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|1097aa|up_4|LR130759.1_1417326_1420617_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|357aa|up_3|LR130759.1_1420678_1421749_+	pfam02254, TrkA_N, TrkA-N domain	NA|308aa|up_2|LR130759.1_1421867_1422791_+	PRK00241, nudC, NAD(+) diphosphatase	NA|244aa|up_1|LR130759.1_1422807_1423539_-	pfam14032, PknH_C, PknH-like extracellular domain	NA|85aa|up_0|LR130759.1_1423678_1423933_-	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein	NA|698aa|down_0|LR130759.1_1424082_1426176_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|53aa|down_1|LR130759.1_1426305_1426464_+	NA	NA|118aa|down_2|LR130759.1_1426522_1426876_+	pfam02467, Whib, Transcription factor WhiB	NA|489aa|down_3|LR130759.1_1426964_1428431_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|122aa|down_4|LR130759.1_1429079_1429445_+	NA	NA|700aa|down_5|LR130759.1_1429276_1431376_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|151aa|down_6|LR130759.1_1431403_1431856_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|555aa|down_7|LR130759.1_1431880_1433545_+	NA	NA|58aa|down_8|LR130759.1_1433723_1433897_+	NA	NA|296aa|down_9|LR130759.1_1433916_1434804_-	TIGR03882, hypothetical_protein, bacteriocin biosynthesis cyclodehydratase domain
GCA_900292015.1_MB901379	LR130759	Mycobacterium sp. DSM 104308 isolate 901379 genome assembly, chromosome: I	10	4230310-4230919	4	CRT	no		csa3,cas3,WYL,cas4,DEDDh,DinG,casR	Orphan	CGGCACCGGCGGCGCCGGCGGNANC	25	1	3	4230335-4230354|4230335-4230354|4230335-4230354	LR130759.1_2617040-2617021|LR130759.1_2623473-2623454|LR130759.1_4407332-4407313	NA	8	8	Orphan	csa3,cas3,WYL,cas4,DEDDh,DinG,casR	NA|135aa|up_4|LR130759.1_4223832_4224237_-,NA|81aa|up_0|LR130759.1_4229290_4229533_+,NA	NA|181aa|up_9|LR130759.1_4218492_4219035_+	COG4420, COG4420, Predicted membrane protein [Function unknown]	NA|457aa|up_8|LR130759.1_4219151_4220522_+	COG2951, MltB, Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]	NA|383aa|up_7|LR130759.1_4220573_4221722_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|136aa|up_6|LR130759.1_4221729_4222137_-	PRK03100, PRK03100, Sec-independent protein translocase subunit TatB	NA|505aa|up_5|LR130759.1_4222147_4223662_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|135aa|up_4|LR130759.1_4223832_4224237_-	NA	NA|264aa|up_3|LR130759.1_4224410_4225202_-	PRK09647, PRK09647, RNA polymerase sigma factor SigE; Reviewed	NA|225aa|up_2|LR130759.1_4225447_4226122_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|891aa|up_1|LR130759.1_4226308_4228981_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|81aa|up_0|LR130759.1_4229290_4229533_+	NA	NA|213aa|down_0|LR130759.1_4234174_4234813_+	pfam17933, TetR_C_25, Tetracyclin repressor-like, C-terminal domain	NA|316aa|down_1|LR130759.1_4234802_4235750_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|549aa|down_2|LR130759.1_4235746_4237393_+	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]	NA|225aa|down_3|LR130759.1_4237442_4238117_+	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|563aa|down_4|LR130759.1_4238172_4239861_+	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|145aa|down_5|LR130759.1_4239902_4240337_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|405aa|down_6|LR130759.1_4240530_4241745_-	PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|388aa|down_7|LR130759.1_4241953_4243117_+	TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family	NA|56aa|down_8|LR130759.1_4243141_4243309_-	pfam11314, DUF3117, Protein of unknown function (DUF3117)	NA|194aa|down_9|LR130759.1_4243484_4244066_-	TIGR00624, DNA-3-methyladenine_glycosylase_1, DNA-3-methyladenine glycosylase I
GCA_900292015.1_MB901379	LR130759	Mycobacterium sp. DSM 104308 isolate 901379 genome assembly, chromosome: I	12	4362287-4362780	5,2	CRT,PILER-CR	no		csa3,cas3,WYL,cas4,DEDDh,DinG,casR	Orphan	GGNGCCGGCGGGGCCGGCGGNNC,CGCCGGCCCCGCCGGCTCCGCC	23,22	1	4	4362679-4362700|4362679-4362700|4362679-4362700|4362679-4362700	LR130759.1_5312016-5312037|LR130759.1_4365061-4365082|LR130759.1_4365070-4365091|LR130759.1_5289087-5289108	NA:NA	7,4	7	Orphan	csa3,cas3,WYL,cas4,DEDDh,DinG,casR	NA|85aa|up_2|LR130759.1_4356716_4356971_-,NA|202aa|down_3|LR130759.1_4369857_4370463_+	NA|375aa|up_9|LR130759.1_4347792_4348917_-	pfam17198, AveC_like, Spirocyclase AveC-like	NA|370aa|up_8|LR130759.1_4348923_4350033_-	pfam13458, Peripla_BP_6, Periplasmic binding protein	NA|282aa|up_7|LR130759.1_4350125_4350971_-	pfam07728, AAA_5, AAA domain (dynein-related subfamily)	NA|587aa|up_6|LR130759.1_4350967_4352728_-	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	NA|385aa|up_5|LR130759.1_4352951_4354106_-	pfam00823, PPE, PPE family	NA|436aa|up_4|LR130759.1_4354482_4355790_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|281aa|up_3|LR130759.1_4355877_4356720_+	PRK12428, PRK12428, coniferyl-alcohol dehydrogenase	NA|85aa|up_2|LR130759.1_4356716_4356971_-	NA	NA|764aa|up_1|LR130759.1_4357421_4359713_+	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|574aa|up_0|LR130759.1_4359793_4361515_-	pfam12077, DUF3556, Transmembrane protein of unknown function (DUF3556)	NA|456aa|down_0|LR130759.1_4365721_4367089_+	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|170aa|down_1|LR130759.1_4367165_4367675_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|563aa|down_2|LR130759.1_4368172_4369861_+	PRK05878, PRK05878, pyruvate phosphate dikinase; Provisional	NA|202aa|down_3|LR130759.1_4369857_4370463_+	NA	NA|412aa|down_4|LR130759.1_4370500_4371736_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|302aa|down_5|LR130759.1_4371954_4372860_-	PRK05855, PRK05855, SDR family oxidoreductase	NA|202aa|down_6|LR130759.1_4373190_4373796_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|159aa|down_7|LR130759.1_4373798_4374275_-	pfam06983, 3-dmu-9_3-mt, 3-demethylubiquinone-9 3-methyltransferase	NA|289aa|down_8|LR130759.1_4374388_4375255_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|341aa|down_9|LR130759.1_4375265_4376288_-	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase
GCA_900292015.1_MB901379	LR130759	Mycobacterium sp. DSM 104308 isolate 901379 genome assembly, chromosome: I	17	5328844-5329529	6,7	CRT,CRT	no		csa3,cas3,WYL,cas4,DEDDh,DinG,casR	Orphan	CGGNNNNGGCGGNACCGGCGNNACCGGCGGNA,GGCNNNGNCGGCNCCGNCGGCACCGGCGGCA	32,31	3	5	5328939-5328957|5328939-5328957|5329158-5329198|5329158-5329198|5329230-5329261	LR130759.1_973536-973554|LR130759.1_5480316-5480298|LR130759.1_5329512-5329552|LR130759.1_5329866-5329906|LR130759.1_5284196-5284227	NA:NA	14,14	14	Orphan	csa3,cas3,WYL,cas4,DEDDh,DinG,casR	NA|42aa|up_6|LR130759.1_5304648_5304774_+,NA|276aa|up_5|LR130759.1_5304775_5305603_+,NA|38aa|up_3|LR130759.1_5307825_5307939_-,NA|175aa|down_1|LR130759.1_5336425_5336950_-,NA|49aa|down_5|LR130759.1_5339196_5339343_-,NA|137aa|down_9|LR130759.1_5341373_5341784_-	NA|113aa|up_9|LR130759.1_5300252_5300591_-	TIGR00229, Sensor_protein_FixL, PAS domain S-box	NA|478aa|up_8|LR130759.1_5300765_5302199_-	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|561aa|up_7|LR130759.1_5302861_5304544_-	pfam00934, PE, PE family	NA|42aa|up_6|LR130759.1_5304648_5304774_+	NA	NA|276aa|up_5|LR130759.1_5304775_5305603_+	NA	NA|491aa|up_4|LR130759.1_5305602_5307075_+	pfam00934, PE, PE family	NA|38aa|up_3|LR130759.1_5307825_5307939_-	NA	NA|2030aa|up_2|LR130759.1_5307942_5314032_+	pfam00934, PE, PE family	NA|2593aa|up_1|LR130759.1_5314200_5321979_+	pfam00934, PE, PE family	NA|1312aa|up_0|LR130759.1_5323019_5326955_+	pfam00934, PE, PE family	NA|353aa|down_0|LR130759.1_5335370_5336429_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|175aa|down_1|LR130759.1_5336425_5336950_-	NA	NA|58aa|down_2|LR130759.1_5337257_5337431_+	pfam05532, CsbD, CsbD-like	NA|225aa|down_3|LR130759.1_5337471_5338146_+	pfam01083, Cutinase, Cutinase	NA|326aa|down_4|LR130759.1_5338202_5339180_+	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs	NA|49aa|down_5|LR130759.1_5339196_5339343_-	NA	NA|128aa|down_6|LR130759.1_5339371_5339755_-	TIGR03666, Rv2061_F420, PPOX class probable F420-dependent enzyme, Rv2061 family	NA|385aa|down_7|LR130759.1_5339895_5341050_+	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family	NA|91aa|down_8|LR130759.1_5341036_5341309_-	cd07302, CHD, cyclase homology domain	NA|137aa|down_9|LR130759.1_5341373_5341784_-	NA
GCA_900292015.1_MB901379	LR130759	Mycobacterium sp. DSM 104308 isolate 901379 genome assembly, chromosome: I	18	5329552-5329883	8	CRT	no		csa3,cas3,WYL,cas4,DEDDh,DinG,casR	Orphan	CGGCNNNGGCGGCACCGGCGGCACCGGCGGCA	32	2	2	5329584-5329614|5329647-5329665	LR130759.1_5284196-5284226|LR130759.1_3304231-3304249	NA	5	5	Orphan	csa3,cas3,WYL,cas4,DEDDh,DinG,casR	NA|42aa|up_6|LR130759.1_5304648_5304774_+,NA|276aa|up_5|LR130759.1_5304775_5305603_+,NA|38aa|up_3|LR130759.1_5307825_5307939_-,NA|175aa|down_1|LR130759.1_5336425_5336950_-,NA|49aa|down_5|LR130759.1_5339196_5339343_-,NA|137aa|down_9|LR130759.1_5341373_5341784_-	NA|113aa|up_9|LR130759.1_5300252_5300591_-	TIGR00229, Sensor_protein_FixL, PAS domain S-box	NA|478aa|up_8|LR130759.1_5300765_5302199_-	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|561aa|up_7|LR130759.1_5302861_5304544_-	pfam00934, PE, PE family	NA|42aa|up_6|LR130759.1_5304648_5304774_+	NA	NA|276aa|up_5|LR130759.1_5304775_5305603_+	NA	NA|491aa|up_4|LR130759.1_5305602_5307075_+	pfam00934, PE, PE family	NA|38aa|up_3|LR130759.1_5307825_5307939_-	NA	NA|2030aa|up_2|LR130759.1_5307942_5314032_+	pfam00934, PE, PE family	NA|2593aa|up_1|LR130759.1_5314200_5321979_+	pfam00934, PE, PE family	NA|1312aa|up_0|LR130759.1_5323019_5326955_+	pfam00934, PE, PE family	NA|353aa|down_0|LR130759.1_5335370_5336429_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|175aa|down_1|LR130759.1_5336425_5336950_-	NA	NA|58aa|down_2|LR130759.1_5337257_5337431_+	pfam05532, CsbD, CsbD-like	NA|225aa|down_3|LR130759.1_5337471_5338146_+	pfam01083, Cutinase, Cutinase	NA|326aa|down_4|LR130759.1_5338202_5339180_+	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs	NA|49aa|down_5|LR130759.1_5339196_5339343_-	NA	NA|128aa|down_6|LR130759.1_5339371_5339755_-	TIGR03666, Rv2061_F420, PPOX class probable F420-dependent enzyme, Rv2061 family	NA|385aa|down_7|LR130759.1_5339895_5341050_+	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family	NA|91aa|down_8|LR130759.1_5341036_5341309_-	cd07302, CHD, cyclase homology domain	NA|137aa|down_9|LR130759.1_5341373_5341784_-	NA
GCA_900292015.1_MB901379	LR130759	Mycobacterium sp. DSM 104308 isolate 901379 genome assembly, chromosome: I	19	5329906-5330434	9	CRT	no		csa3,cas3,WYL,cas4,DEDDh,DinG,casR	Orphan	CGGNNNCGGCGGCNNCGGCGGCNCCGGCGGC	31	2	2	5329937-5329968|5330000-5330019	LR130759.1_5284195-5284226|LR130759.1_973535-973554	NA	7	7	Orphan	csa3,cas3,WYL,cas4,DEDDh,DinG,casR	NA|42aa|up_6|LR130759.1_5304648_5304774_+,NA|276aa|up_5|LR130759.1_5304775_5305603_+,NA|38aa|up_3|LR130759.1_5307825_5307939_-,NA|175aa|down_1|LR130759.1_5336425_5336950_-,NA|49aa|down_5|LR130759.1_5339196_5339343_-,NA|137aa|down_9|LR130759.1_5341373_5341784_-	NA|113aa|up_9|LR130759.1_5300252_5300591_-	TIGR00229, Sensor_protein_FixL, PAS domain S-box	NA|478aa|up_8|LR130759.1_5300765_5302199_-	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|561aa|up_7|LR130759.1_5302861_5304544_-	pfam00934, PE, PE family	NA|42aa|up_6|LR130759.1_5304648_5304774_+	NA	NA|276aa|up_5|LR130759.1_5304775_5305603_+	NA	NA|491aa|up_4|LR130759.1_5305602_5307075_+	pfam00934, PE, PE family	NA|38aa|up_3|LR130759.1_5307825_5307939_-	NA	NA|2030aa|up_2|LR130759.1_5307942_5314032_+	pfam00934, PE, PE family	NA|2593aa|up_1|LR130759.1_5314200_5321979_+	pfam00934, PE, PE family	NA|1312aa|up_0|LR130759.1_5323019_5326955_+	pfam00934, PE, PE family	NA|353aa|down_0|LR130759.1_5335370_5336429_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|175aa|down_1|LR130759.1_5336425_5336950_-	NA	NA|58aa|down_2|LR130759.1_5337257_5337431_+	pfam05532, CsbD, CsbD-like	NA|225aa|down_3|LR130759.1_5337471_5338146_+	pfam01083, Cutinase, Cutinase	NA|326aa|down_4|LR130759.1_5338202_5339180_+	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs	NA|49aa|down_5|LR130759.1_5339196_5339343_-	NA	NA|128aa|down_6|LR130759.1_5339371_5339755_-	TIGR03666, Rv2061_F420, PPOX class probable F420-dependent enzyme, Rv2061 family	NA|385aa|down_7|LR130759.1_5339895_5341050_+	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family	NA|91aa|down_8|LR130759.1_5341036_5341309_-	cd07302, CHD, cyclase homology domain	NA|137aa|down_9|LR130759.1_5341373_5341784_-	NA
