The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	8579	121065	2319449	transposase,integrase	Pseudomonas_phage(18.75%)	101	85883:85898	122472:122487
SPR02253.1|8579_8963_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02260.1|9475_11275_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02266.1|11747_11900_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02273.1|12084_13224_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR02278.1|13635_14265_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR02286.1|14459_14939_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR02293.1|14938_15991_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR02299.1|15999_17577_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR02306.1|17599_18745_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR02312.1|18750_20505_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02319.1|20514_21522_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR02324.1|21543_22644_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR02330.1|22974_23799_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02336.1|23813_25832_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02340.1|26511_28227_+	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
SPR02347.1|28493_28892_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR02351.1|28959_29910_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.3e-84
SPR02356.1|30030_30255_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR02363.1|30767_32477_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02370.1|32485_33934_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.5	9.7e-71
SPR02376.1|34167_34743_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR02383.1|34777_35422_+	ankyrin	NA	R4TPX0	Phaeocystis_globosa_virus	26.8	4.0e-08
SPR02388.1|35469_36018_+	membrane protein	NA	NA	NA	NA	NA
SPR02395.1|36021_36831_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	4.1e-18
SPR02400.1|37204_37933_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR02407.1|37954_38812_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR02415.1|38912_39488_+	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	38.6	4.3e-06
SPR02428.1|39514_40051_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02433.1|40144_40600_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR02438.1|40877_43697_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02446.1|43962_46626_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR02453.1|46610_47675_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR02459.1|47684_49439_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02463.1|49444_50590_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR02468.1|50605_53257_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR02471.1|53256_54558_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR02476.1|54554_55238_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02480.1|55249_56941_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR02485.1|56937_57321_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR02489.1|57343_58288_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02496.1|58321_58498_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02501.1|58582_59242_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR02506.1|59238_61731_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR02513.1|61711_62041_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02519.1|62040_63363_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02523.1|63401_63737_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02527.1|64173_64632_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02531.1|64628_65180_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR02536.1|65179_65515_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02542.1|65582_66053_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR02546.1|66055_67195_-|integrase	integrase	integrase	A0A0U4JNS1	Bacillus_phage	27.6	1.2e-18
SPR02552.1|67565_68132_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02557.1|68384_68546_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR02562.1|68715_69594_+|transposase	transposase	transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	58.1	2.5e-85
SPR02564.1|69680_69830_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR02577.1|70049_70289_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR02581.1|70398_70863_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02587.1|70849_71416_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02590.1|71661_72270_-	Type surface antigen 22	NA	NA	NA	NA	NA
SPR02596.1|72445_73249_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SPR02601.1|73340_74768_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.5	3.7e-38
SPR02607.1|75083_76445_+	translocation protein TolB	NA	NA	NA	NA	NA
SPR02612.1|76620_77544_+	permease	NA	NA	NA	NA	NA
SPR02617.1|77673_78636_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	41.5	2.5e-54
SPR02625.1|78656_80168_-	deoxyribodipyrimidine photo-lyase	NA	A0A1V0SGL1	Hokovirus	31.1	2.3e-54
SPR02630.1|81088_82228_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR02636.1|83052_84075_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	27.9	4.5e-14
SPR02640.1|84493_84775_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR02644.1|85818_86610_-	Uncharacterised protein	NA	NA	NA	NA	NA
85883:85898	attL	TCATTACTGAACAAAT	NA	NA	NA	NA
SPR02649.1|87389_87788_+	membrane protein	NA	NA	NA	NA	NA
SPR02654.1|88352_89492_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR02658.1|90054_90429_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02666.1|90382_90556_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR02671.1|90634_90877_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02676.1|90905_91061_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02679.1|91506_91746_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02682.1|91721_92564_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02686.1|92627_92960_+	DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	49.0	3.8e-23
SPR02705.1|93670_95236_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02710.1|95239_95647_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR02714.1|95913_97629_-	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
SPR02725.1|98310_100326_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02729.1|100382_101138_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02734.1|101335_102004_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02739.1|102115_102514_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR02745.1|102850_103015_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02751.1|103055_103424_+	ankyrin repeat-containing protein 19	NA	NA	NA	NA	NA
SPR02757.1|103652_103871_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02762.1|104229_104448_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR02767.1|105862_106117_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR02771.1|106179_106296_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR02775.1|106689_107583_-	lipase LipB	NA	A0A2I7SAF7	Vibrio_phage	28.3	6.5e-09
SPR02780.1|108155_108542_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR02784.1|109297_109540_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02788.1|110658_112416_-	repeat-containing protein D	NA	NA	NA	NA	NA
SPR02794.1|113091_114189_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
SPR02798.1|115198_115360_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02806.1|116359_117616_+	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR02812.1|117634_118801_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02818.1|118908_119391_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR02822.1|119820_121065_+|integrase	integrase	integrase	A0A077KGX2	Edwardsiella_phage	25.9	2.2e-18
122472:122487	attR	ATTTGTTCAGTAATGA	NA	NA	NA	NA
>prophage 2
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	137710	189609	2319449	transposase,integrase	Streptococcus_phage(33.33%)	53	160785:160826	180286:180327
SPR02914.1|137710_138670_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR02918.1|138721_141385_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR02922.1|141660_142458_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02926.1|142472_144491_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02929.1|145170_146886_+	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
SPR02933.1|147095_147551_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR02937.1|147618_148701_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.5e-84
SPR02942.1|148821_149409_-	hydrolase	NA	NA	NA	NA	NA
SPR02945.1|149535_149781_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR02948.1|149816_150494_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR02952.1|150670_151186_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02956.1|151204_152137_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02961.1|152153_152732_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02965.1|152861_153563_-	histidine kinase	NA	NA	NA	NA	NA
SPR02968.1|153627_153891_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02972.1|154265_155075_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	4.8e-19
SPR02976.1|155078_155582_-	membrane protein	NA	NA	NA	NA	NA
SPR02981.1|155629_156274_-	ankyrin	NA	A0A068ELT3	Penguinpox_virus	28.1	3.4e-07
SPR02984.1|156308_156884_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	32.1	1.3e-05
SPR02988.1|157120_158569_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.4	1.3e-70
SPR02993.1|158577_160293_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02997.1|160448_160775_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
160785:160826	attL	ATTAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
SPR03002.1|161478_161616_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03005.1|161753_162470_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR03008.1|163001_163382_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	33.0	5.2e-08
SPR03011.1|163378_164941_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
SPR03016.1|165147_166476_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR03020.1|166988_167162_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR03024.1|167231_167672_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03028.1|167966_168173_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03031.1|168194_169805_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR03036.1|170268_171294_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03042.1|171580_172783_-	aspartate aminotransferase	NA	NA	NA	NA	NA
SPR03045.1|172889_173927_+	Ubiquinone biosynthesis O-methyltransferase	NA	NA	NA	NA	NA
SPR03049.1|173986_174820_+	ABC transporter	NA	NA	NA	NA	NA
SPR03053.1|174816_175407_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03058.1|175434_176637_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
SPR03062.1|176677_177190_+	Uncharacterised protein	NA	A0A0K0KVI2	Prochlorococcus_phage	38.3	1.0e-19
SPR03067.1|177249_177975_+	DNA repair protein RecO	NA	NA	NA	NA	NA
SPR03071.1|178358_178487_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR03074.1|178540_178843_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR03080.1|178796_179033_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03084.1|179738_179888_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR03088.1|180059_180224_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR03101.1|180942_181266_-	Uncharacterised protein	NA	NA	NA	NA	NA
180286:180327	attR	ATTAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
SPR03105.1|181303_181984_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03109.1|182232_182604_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
SPR03111.1|182627_183149_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
SPR03116.1|183152_185279_+	elongation factor G	NA	A0A1S5SF82	Streptococcus_phage	27.7	2.5e-59
SPR03121.1|185540_187022_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
SPR03125.1|188086_188227_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03133.1|188281_188458_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR03136.1|189435_189609_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
>prophage 3
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	200723	241119	2319449	tRNA,integrase,terminase,transposase	uncultured_Mediterranean_phage(14.29%)	49	191519:191544	241624:241649
191519:191544	attL	CTCAAACCTCATTGTAAATGACTATA	NA	NA	NA	NA
SPR03187.1|200723_202145_-|terminase	terminase	terminase	A0A1B1IUW7	uncultured_Mediterranean_phage	30.7	9.6e-55
SPR03194.1|202476_203100_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
SPR03198.1|203099_203660_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
SPR03205.1|203669_204770_+	GTP-binding protein YchF	NA	NA	NA	NA	NA
SPR03215.1|204817_204979_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03218.1|205760_206555_+	exodeoxyribonuclease III	NA	R4TWA8	Phaeocystis_globosa_virus	28.1	9.2e-15
SPR03222.1|207044_207167_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03226.1|208145_209285_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR03229.1|209469_209622_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03232.1|209824_210106_+	membrane protein	NA	NA	NA	NA	NA
SPR03234.1|210109_210922_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	31.1	2.8e-27
SPR03238.1|211295_211397_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR03242.1|211828_212071_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR03245.1|212086_212698_+|integrase	integrase	integrase	A0A2H4JCB7	uncultured_Caudovirales_phage	28.8	8.7e-05
SPR03249.1|212676_213000_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR03254.1|213045_213381_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03257.1|213380_213773_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03264.1|213781_213934_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03268.1|213930_214257_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03273.1|214395_214563_+	TPR repeat-containing protein 06_01	NA	NA	NA	NA	NA
SPR03277.1|214615_214768_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR03281.1|214827_215043_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR03283.1|217136_221480_+	ScaA autotransporter protein	NA	NA	NA	NA	NA
SPR03288.1|222466_222697_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03291.1|222897_223104_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR03295.1|223100_223244_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03300.1|223299_223674_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03304.1|223627_223801_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR03308.1|223879_224122_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03310.1|224150_224306_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR03315.1|224751_224991_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03319.1|224966_225809_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03326.1|225872_226205_+	DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	49.0	3.8e-23
SPR03330.1|226915_228481_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03340.1|228484_228892_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03345.1|229158_230874_-	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
SPR03349.1|231555_232542_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03353.1|232646_233117_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR03356.1|233113_233692_-|integrase	integrase	integrase	A0A0S2MV79	Bacillus_phage	24.9	4.8e-05
SPR03359.1|233703_234048_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR03374.1|234007_234256_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR03380.1|234687_234954_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR03386.1|235191_235311_-|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR03394.1|235731_239169_+	sodium:proline symporter	NA	NA	NA	NA	NA
SPR03401.1|239703_239955_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03405.1|239999_240287_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03411.1|240294_240483_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03415.1|240463_240733_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03419.1|240744_241119_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
241624:241649	attR	CTCAAACCTCATTGTAAATGACTATA	NA	NA	NA	NA
>prophage 4
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	249679	334809	2319449	protease,tRNA,integrase,transposase	Salicola_phage(18.18%)	98	261172:261200	284314:284342
SPR03468.1|249679_249844_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR03473.1|250066_250354_-	(p)ppGpp synthetase	NA	NA	NA	NA	NA
SPR03477.1|250610_250802_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03481.1|250842_250950_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03484.1|251446_252115_+	glutathione S-transferase	NA	NA	NA	NA	NA
SPR03488.1|252559_253036_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
SPR03493.1|253059_254331_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR03496.1|254333_254777_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
SPR03508.1|254823_255186_-	NADH ubiquinone oxidoreductase	NA	NA	NA	NA	NA
SPR03513.1|255157_255664_-	ribonuclease H	NA	A0A1P8DJF0	Virus_Rctr71	47.7	1.9e-29
SPR03516.1|255663_256191_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03520.1|256319_257144_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
SPR03523.1|257272_257593_-	ferredoxin	NA	NA	NA	NA	NA
SPR03526.1|257598_258309_-	heme exporter protein C	NA	NA	NA	NA	NA
SPR03536.1|258301_258808_-	Laccase domain protein YfiH	NA	NA	NA	NA	NA
SPR03540.1|259010_259862_+	glutamine synthetase	NA	NA	NA	NA	NA
SPR03544.1|260096_260489_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR03549.1|260696_261197_+	Uncharacterised protein	NA	NA	NA	NA	NA
261172:261200	attL	TTTCAGGGACATATATAGATATATAAAAA	NA	NA	NA	NA
SPR03552.1|261506_261734_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR03556.1|261780_261948_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR03560.1|261944_262415_+	peroxiredoxin	NA	NA	NA	NA	NA
SPR03564.1|262482_262818_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03570.1|262817_263237_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR03575.1|263403_264462_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR03578.1|264458_265118_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR03583.1|265204_265408_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03586.1|265408_266386_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03590.1|266408_266792_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR03594.1|266788_268480_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR03596.1|268731_269628_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR03600.1|269737_270304_+	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	37.0	2.3e-20
SPR03603.1|270278_270926_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03606.1|271058_271211_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03608.1|271395_272535_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR03611.1|272946_273840_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR03615.1|273793_274024_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR03693.1|274004_275597_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03695.1|275606_276623_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR03697.1|276607_277258_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR03700.1|277677_278238_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03705.1|278534_279566_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03707.1|279857_280046_-	guanosine polyphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
SPR03710.1|280150_280528_-	guanosine polyphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
SPR03715.1|280637_281006_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR03719.1|281028_281697_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR03724.1|281711_282413_-	histidine kinase	NA	NA	NA	NA	NA
SPR03729.1|282477_282756_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR03733.1|282860_283037_-	ankyrin	NA	NA	NA	NA	NA
SPR03737.1|283302_283413_-	DNA helicase	NA	NA	NA	NA	NA
SPR03740.1|283426_283909_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03745.1|284707_284839_-	Uncharacterised protein	NA	NA	NA	NA	NA
284314:284342	attR	TTTTTATATATCTATATATGTCCCTGAAA	NA	NA	NA	NA
SPR03748.1|285125_285440_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR03751.1|286421_286961_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR03754.1|287581_288061_+	transcription elongation factor GreA	NA	A0A248SJQ8	Salicola_phage	27.7	1.2e-06
SPR03758.1|288107_289007_+	RNA polymerase factor sigma-32	NA	A0A248SJA5	Salicola_phage	30.1	5.1e-30
SPR03762.1|289195_289396_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR03766.1|289696_290239_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03770.1|290521_290692_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03780.1|291982_292285_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03783.1|292296_292734_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03786.1|293168_294656_-	ankyrin repeat-containing protein 13	NA	A0A1V0S7Q4	Shearwaterpox_virus	30.4	3.4e-10
SPR03796.1|295030_295339_+	conjugative transfer protein TraC	NA	NA	NA	NA	NA
SPR03798.1|295430_296039_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR03801.1|296035_296659_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR03805.1|296724_297876_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR03808.1|298170_298527_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR03812.1|298620_299310_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR03815.1|299494_299647_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03816.1|300070_300301_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03819.1|300478_300661_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03821.1|301143_301590_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03833.1|301668_301908_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03838.1|302413_302800_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03841.1|303597_304104_-|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	28.7	1.9e-13
SPR03845.1|304090_304465_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03848.1|304780_305329_-	cytochrome c	NA	NA	NA	NA	NA
SPR03851.1|305576_306536_+	stomatin 2	NA	NA	NA	NA	NA
SPR03855.1|307000_307123_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03859.1|307500_307854_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03863.1|307832_308021_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03868.1|308053_308350_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03872.1|310684_311701_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR03877.1|311880_312936_+	HflK protein	NA	NA	NA	NA	NA
SPR03881.1|312959_313826_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
SPR03886.1|313843_315244_+	Type surface antigen 47 (47 kDa/htrA)	NA	NA	NA	NA	NA
SPR03892.1|315458_316073_+	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
SPR03897.1|316336_319120_-	Uncharacterised protein	NA	A0A0B5A7K5	Paracoccus_phage	28.5	1.5e-96
SPR03901.1|319318_320335_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
SPR03904.1|320331_321237_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.7	8.8e-30
SPR03906.1|321171_322557_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03907.1|322556_324923_-	DNA topoisomerase I	NA	E3T4K4	Cafeteria_roenbergensis_virus	31.9	1.2e-89
SPR03910.1|325015_325972_-	malate dehydrogenase	NA	NA	NA	NA	NA
SPR03912.1|326191_326686_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
SPR03915.1|326854_329386_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03921.1|329600_330524_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.3	1.5e-08
SPR03924.1|330520_331066_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	41.7	3.8e-20
SPR03927.1|331248_333726_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR03930.1|333777_334809_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 5
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	351109	409924	2319449	tRNA,integrase,transposase	Aeromonas_phage(20.0%)	60	350339:350355	383002:383018
350339:350355	attL	GAAAAAAAAACTGAAGA	NA	NA	NA	NA
SPR04034.1|351109_351511_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR04037.1|351597_351750_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR04041.1|352002_352209_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR04045.1|352162_352573_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR04049.1|353247_353844_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
SPR04054.1|353973_354729_+	ribonuclease PH	NA	NA	NA	NA	NA
SPR04057.1|355217_356012_-	cytochrome c	NA	NA	NA	NA	NA
SPR04062.1|356894_357029_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
SPR04067.1|357029_357569_+	ribonuclease P	NA	NA	NA	NA	NA
SPR04071.1|357807_360300_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04075.1|360475_360610_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04078.1|360989_362270_-	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	54.3	2.3e-108
SPR04085.1|362303_365021_-	DNA gyrase subunit A	NA	A0A172JHV7	Bacillus_phage	35.3	1.4e-102
SPR04089.1|365122_365872_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR04092.1|365998_366604_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
SPR04095.1|366637_366862_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
SPR04099.1|367625_368255_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR04102.1|368449_368767_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR04106.1|368823_369198_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04130.1|369650_370406_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR04134.1|370593_370980_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR04139.1|371011_371269_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR04142.1|371274_371619_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR04145.1|371679_372039_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR04149.1|372004_372280_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR04154.1|372257_372587_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04158.1|373183_373624_+	transcriptional regulator	NA	A0A223W054	Agrobacterium_phage	43.2	5.8e-11
SPR04162.1|374737_375646_+|tRNA	tRNA pseudouridine(55) synthase	tRNA	NA	NA	NA	NA
SPR04165.1|375669_375939_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
SPR04168.1|376272_378483_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
SPR04171.1|378704_379007_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04175.1|379302_380556_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04177.1|380647_381370_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04180.1|381557_382793_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	22.1	7.1e-06
SPR04184.1|382887_383409_+	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
383002:383018	attR	GAAAAAAAAACTGAAGA	NA	NA	NA	NA
SPR04188.1|383435_383642_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
SPR04191.1|383830_384436_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04193.1|384472_387676_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	34.6	3.1e-178
SPR04197.1|387803_388391_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04200.1|388725_389988_+	2-polyprenyl-6-methoxyphenol 4-hydroxylase	NA	NA	NA	NA	NA
SPR04203.1|390044_391205_+	succinyl-CoA ligase subunit beta	NA	NA	NA	NA	NA
SPR04206.1|391219_392098_+	succinyl-CoA synthetase subunit alpha	NA	NA	NA	NA	NA
SPR04209.1|392178_393840_+	NADH dehydrogenase	NA	NA	NA	NA	NA
SPR04212.1|393925_394123_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04215.1|394031_396872_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04219.1|396900_397155_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04222.1|397151_397637_-	sodium:proton antiporter	NA	NA	NA	NA	NA
SPR04225.1|397686_398460_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
SPR04229.1|398511_399204_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
SPR04233.1|399280_399826_-	ubiquinone biosynthesis protein UbiB	NA	NA	NA	NA	NA
SPR04235.1|399788_400337_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
SPR04239.1|400475_402056_+|tRNA	lysine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR04243.1|402645_402741_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04248.1|402820_403114_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
SPR04253.1|403119_403869_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
SPR04257.1|404045_405533_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
SPR04260.1|405543_406134_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04265.1|406642_407686_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04269.1|408322_408898_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR04274.1|408907_409924_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 6
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	422648	512359	2319449	tRNA,transposase,integrase	Wolbachia_phage(10.0%)	95	438772:438789	514792:514811
SPR04319.1|422648_423599_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.3e-84
SPR04321.1|423719_424307_-	hydrolase	NA	NA	NA	NA	NA
SPR04326.1|424348_424843_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04331.1|424861_425797_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04335.1|425813_426614_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04339.1|426689_426806_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04344.1|426828_427497_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04347.1|427511_428213_-	histidine kinase	NA	NA	NA	NA	NA
SPR04349.1|428277_428556_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04352.1|428922_429732_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	1.8e-18
SPR04354.1|429735_430284_-	membrane protein	NA	NA	NA	NA	NA
SPR04357.1|430331_430976_-	ankyrin	NA	R4TPX0	Phaeocystis_globosa_virus	26.4	3.0e-08
SPR04360.1|431013_431589_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR04363.1|431824_433273_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.3	2.6e-71
SPR04366.1|433281_434997_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04368.1|435344_435479_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04371.1|435692_435947_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04374.1|436167_436275_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04377.1|436297_436930_-	3'-5' exonuclease	NA	NA	NA	NA	NA
SPR04379.1|436936_437236_-	Cell division protein FtsB	NA	NA	NA	NA	NA
SPR04382.1|437243_437894_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SPR04386.1|437896_438592_-	UDP pyrophosphate synthase	NA	R9W0U9	Flavobacterium_phage	42.1	5.4e-19
SPR04389.1|438767_440573_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	28.9	4.1e-42
438772:438789	attL	AACTATTACCAATATACT	NA	NA	NA	NA
SPR04391.1|441035_444740_-	DNA polymerase III subunit alpha	NA	A0A0K1Y9G6	Streptomyces_phage	30.6	2.2e-127
438772:438789	attL	AACTATTACCAATATACT	NA	NA	NA	NA
SPR04395.1|444729_447294_-|tRNA	valine--tRNA ligase	tRNA	A0A2K9L2Y7	Tupanvirus	50.5	4.7e-246
SPR04398.1|447325_448201_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
SPR04401.1|448119_448305_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04404.1|448466_449243_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04406.1|449594_450593_+	peptidase S66	NA	NA	NA	NA	NA
SPR04409.1|450684_450783_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04412.1|451940_452093_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR04415.1|452287_452662_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04418.1|452615_452789_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR04421.1|453383_453644_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04423.1|453637_453856_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04428.1|454176_454872_-	cytochrome c oxidase subunit II	NA	NA	NA	NA	NA
SPR04431.1|455083_455560_-	RDD family protein	NA	NA	NA	NA	NA
SPR04434.1|456415_458632_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR04439.1|460115_460340_-	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	53.1	1.3e-06
SPR04443.1|460541_460823_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR04446.1|461187_464061_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.6	2.4e-307
SPR04451.1|464414_464543_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04455.1|464955_465096_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR04459.1|465045_465909_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR04462.1|465893_466340_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR04465.1|466501_467029_-	(p)pGpp hydrolase	NA	A0A292GI44	Xanthomonas_phage	36.4	4.4e-05
SPR04468.1|467371_467587_-	DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	55.9	2.8e-11
SPR04471.1|467779_468550_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR04478.1|468628_468817_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR04486.1|469002_469194_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR04488.1|469296_469410_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR04491.1|470068_471331_+	MFS transporter permease	NA	NA	NA	NA	NA
471056:471073	attR	AGTATATTGGTAATAGTT	NA	NA	NA	NA
SPR04494.1|471346_472750_+	sodium:pantothenate symporter	NA	NA	NA	NA	NA
471056:471073	attR	AGTATATTGGTAATAGTT	NA	NA	NA	NA
SPR04498.1|473106_473973_-|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	26.1	5.7e-18
SPR04503.1|474009_474189_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04508.1|474283_474520_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04512.1|474516_474648_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR04517.1|474647_474962_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR04521.1|475216_475387_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR04526.1|476290_476590_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04530.1|476937_478074_-	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR04534.1|478384_478780_+	cytochrome c biogenesis protein CcmE	NA	NA	NA	NA	NA
SPR04539.1|478810_479725_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04543.1|479721_480195_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
SPR04547.1|480208_481972_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.3	1.2e-59
SPR04551.1|482296_483052_-	organic solvent ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.0	1.6e-21
SPR04555.1|483080_483947_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR04560.1|483986_484778_-	Ribosomal RNA small subunit methyltransferase E	NA	NA	NA	NA	NA
SPR04564.1|484904_485528_+	30S ribosomal protein S4	NA	NA	NA	NA	NA
SPR04568.1|485589_485820_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04572.1|486151_486757_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR04576.1|486823_487006_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR04580.1|487009_487363_+	conjugative transfer protein TraH	NA	NA	NA	NA	NA
SPR04586.1|487603_487882_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR04590.1|487853_489389_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR04594.1|489398_490382_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR04598.1|490433_493103_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR04605.1|493366_494122_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR04609.1|494178_496188_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR04614.1|496355_496811_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR04617.1|496883_497834_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.3e-84
SPR04621.1|497952_498531_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR04625.1|498631_499489_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04629.1|499510_500239_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04634.1|501192_503172_+	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR04639.1|504118_504751_+	DNA methyltransferase	NA	NA	NA	NA	NA
SPR04643.1|504754_505261_-	membrane protein	NA	NA	NA	NA	NA
SPR04648.1|505308_505953_-	ankyrin	NA	A0A068ELT3	Penguinpox_virus	27.5	5.7e-07
SPR04652.1|505987_506563_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	1.6e-05
SPR04657.1|506912_507302_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04660.1|508032_508134_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04666.1|508130_509948_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A0K1LMZ5	Caulobacter_phage	54.7	2.1e-187
SPR04670.1|509970_510963_+	ribonucleotide-diphosphate reductase subunit beta	NA	M1I8A4	Pelagibacter_phage	53.5	2.2e-98
SPR04674.1|511411_511762_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04678.1|512131_512359_+|integrase	integrase	integrase	NA	NA	NA	NA
514792:514811	attR	AAACGCCAGATTAGGATAAG	NA	NA	NA	NA
>prophage 7
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	555292	712587	2319449	tRNA,integrase,transposase	Wolbachia_phage(11.54%)	160	556706:556730	712960:712976
SPR04874.1|555292_556492_-|integrase	integrase	integrase	A0A0R6PGY7	Moraxella_phage	26.4	9.3e-27
556706:556730	attL	TTTTTTCTACCTATTTTCTACCTTT	NA	NA	NA	NA
SPR04876.1|556988_558239_+	sodium:proline symporter	NA	NA	NA	NA	NA
556706:556730	attL	TTTTTTCTACCTATTTTCTACCTTT	NA	NA	NA	NA
SPR04879.1|558359_559310_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.3e-84
556706:556730	attL	TTTTTTCTACCTATTTTCTACCTTT	NA	NA	NA	NA
SPR04886.1|559431_560007_-	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	40.0	5.7e-06
SPR04891.1|560027_560180_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04894.1|560183_560426_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04898.1|560447_561176_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04903.1|561524_562241_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04908.1|562970_563603_+	DNA methyltransferase	NA	NA	NA	NA	NA
SPR04912.1|563606_564200_-	membrane protein	NA	NA	NA	NA	NA
SPR04917.1|564247_564892_-	ankyrin	NA	R4TPX0	Phaeocystis_globosa_virus	26.4	3.0e-08
SPR04922.1|564929_565505_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR04928.1|565738_565870_-	replicative DNA helicase	NA	NA	NA	NA	NA
SPR04931.1|565883_566885_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04935.1|566894_567590_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04939.1|567749_568988_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.7	9.2e-62
SPR04944.1|568996_570274_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04948.1|570300_570996_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR04952.1|570999_571092_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR04957.1|571088_571196_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
SPR04961.1|571167_571560_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR04965.1|572142_572439_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR04969.1|573198_573987_-	zinc ABC transporter permease	NA	NA	NA	NA	NA
SPR04973.1|573967_574681_-	zinc ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.3	6.8e-17
SPR04977.1|574947_575508_-	nucleoid-associated protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SPR04981.1|575519_577199_-	DNA polymerase III subunit gamma/tau	NA	E7DN81	Pneumococcus_phage	38.4	3.2e-41
SPR04985.1|578263_580882_+	ScaD autotransporter protein	NA	NA	NA	NA	NA
SPR04991.1|580971_582447_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04996.1|582505_583876_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	33.5	4.0e-42
SPR05001.1|583968_584148_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05005.1|584068_584818_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
SPR05010.1|584922_585591_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
SPR05013.1|585728_586055_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
SPR05017.1|586095_586365_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
SPR05022.1|586494_586608_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05028.1|587798_587909_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05033.1|588482_588686_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR05039.1|588835_588976_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05042.1|589587_589752_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05047.1|591585_591738_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
589832:589856	attR	AAAGGTAGAAAATAGGTAGAAAAAA	NA	NA	NA	NA
SPR05049.1|591996_592125_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
589832:589856	attR	AAAGGTAGAAAATAGGTAGAAAAAA	NA	NA	NA	NA
SPR05052.1|592303_592495_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
589832:589856	attR	AAAGGTAGAAAATAGGTAGAAAAAA	NA	NA	NA	NA
SPR05055.1|592699_592816_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05062.1|593179_593455_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	38.1	7.1e-07
SPR05066.1|593605_593731_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR05071.1|593856_594192_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05074.1|594191_594584_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR05078.1|594592_594745_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR05082.1|594741_595218_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05086.1|595362_595698_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05090.1|595736_595844_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05094.1|596225_596609_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR05097.1|596815_597310_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR05100.1|597351_597939_+	hydrolase	NA	NA	NA	NA	NA
SPR05105.1|598441_598954_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
SPR05108.1|599390_599939_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
SPR05113.1|600501_600939_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05118.1|602129_604373_+	ScaE autotransporter protein	NA	NA	NA	NA	NA
SPR05121.1|604938_608571_+	Secreted effector protein PipB2	NA	NA	NA	NA	NA
SPR05126.1|608924_609173_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05130.1|610529_611771_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	35.7	3.0e-68
SPR05133.1|612268_612439_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR05138.1|613072_613273_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05166.1|613451_613727_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR05171.1|614561_614978_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05175.1|615103_616021_-	peptidase S49	NA	Q9JMP1	Wolbachia_phage	28.3	1.1e-14
SPR05181.1|616325_617681_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
SPR05186.1|617844_618681_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
SPR05190.1|618820_619162_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05194.1|619749_620181_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR05198.1|621193_621796_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR05204.1|621776_621956_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR05208.1|622094_622304_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR05212.1|622468_623392_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR05218.1|624271_624439_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
SPR05223.1|624568_624790_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05227.1|625064_625289_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SPR05232.1|625298_625586_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
SPR05237.1|625829_626702_+	EamA family transporter	NA	NA	NA	NA	NA
SPR05240.1|626719_627976_+	MFS transporter	NA	NA	NA	NA	NA
SPR05243.1|628695_629448_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05246.1|629813_631025_-	penicillin-binding protein 4	NA	G3M511	Mycobacterium_phage	26.9	9.4e-11
SPR05250.1|631050_632844_-|tRNA	aspartate--tRNA(Asp/Asn) ligase	tRNA	NA	NA	NA	NA
SPR05254.1|633107_637298_-	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	27.0	1.3e-70
SPR05259.1|637414_641539_-	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0K9	Chrysochromulina_ericina_virus	31.5	2.1e-25
SPR05264.1|641854_642244_-	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
SPR05270.1|642265_642775_-	50S ribosomal protein L10	NA	NA	NA	NA	NA
SPR05274.1|642778_643528_-	50S ribosomal protein L1	NA	NA	NA	NA	NA
SPR05278.1|643531_643978_-	50S ribosomal protein L11	NA	NA	NA	NA	NA
SPR05283.1|644017_644554_-	transcription termination/antitermination factor NusG	NA	NA	NA	NA	NA
SPR05288.1|644595_644796_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
SPR05292.1|645058_646243_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	26.2	4.3e-32
SPR05297.1|646415_647180_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SPR05301.1|647210_647300_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05306.1|647296_647908_-	recombination protein RecR	NA	NA	NA	NA	NA
SPR05309.1|647995_648532_-	septation protein A	NA	NA	NA	NA	NA
SPR05314.1|648535_649375_-	iron permease	NA	NA	NA	NA	NA
SPR05320.1|649403_649769_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05326.1|650234_651464_-	EAL domain-containing protein	NA	NA	NA	NA	NA
SPR05331.1|651653_652385_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.6	1.1e-27
SPR05337.1|652377_652995_-	arginine ABC transporter permease	NA	NA	NA	NA	NA
SPR05342.1|655975_656242_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR05345.1|656448_656571_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05350.1|656527_656674_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR05354.1|657084_657222_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05358.1|657477_657885_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR05362.1|657950_658811_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05367.1|658837_659062_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR05371.1|659796_659949_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05375.1|660950_661052_-	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR05380.1|662016_662886_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05384.1|663234_664095_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05389.1|664078_664240_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05393.1|664519_664813_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR05397.1|665667_666606_-	ribosomal large subunit pseudouridine synthase	NA	NA	NA	NA	NA
SPR05401.1|666589_667462_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
SPR05405.1|667485_668013_-	inorganic pyrophosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	49.7	1.6e-39
SPR05409.1|668098_668530_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
SPR05412.1|668563_669502_-	recombinase XerC	NA	A0A0K0N6I5	Gordonia_phage	34.9	2.5e-11
SPR05416.1|669527_670871_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
SPR05420.1|670952_675878_+	NAD-glutamate dehydrogenase	NA	NA	NA	NA	NA
SPR05425.1|676334_676472_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05429.1|676859_677276_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR05434.1|677304_679086_-	multidrug ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.1	8.6e-29
SPR05438.1|679135_679888_-	UMP kinase	NA	NA	NA	NA	NA
SPR05442.1|680115_681207_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
SPR05446.1|681196_682606_-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase	NA	NA	NA	NA	NA
SPR05450.1|682602_684072_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
SPR05454.1|684058_685810_-	penicillin-binding protein	NA	NA	NA	NA	NA
SPR05458.1|686113_686374_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05462.1|686414_687353_-	16S rRNA methyltransferase	NA	NA	NA	NA	NA
SPR05466.1|687421_688555_-	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	29.3	5.5e-29
SPR05471.1|688643_690572_-	molecular chaperone DnaK	NA	A0A2P1EIW2	Megavirus	46.7	4.5e-140
SPR05476.1|690952_691240_-	BolA family transcriptional regulator	NA	NA	NA	NA	NA
SPR05481.1|691446_692244_+	enoyl-ACP reductase	NA	NA	NA	NA	NA
SPR05486.1|692442_692571_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05490.1|692920_693238_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR05499.1|693337_694024_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR05504.1|694564_694846_+	membrane protein	NA	NA	NA	NA	NA
SPR05509.1|694849_695659_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	27.4	1.0e-21
SPR05514.1|696025_696649_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR05519.1|696875_697634_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR05522.1|697734_698040_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR05526.1|698405_699545_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR05530.1|699828_700236_+	(p)ppGpp synthetase	NA	NA	NA	NA	NA
SPR05535.1|700357_701320_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	1.3e-84
SPR05539.1|701387_701843_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR05543.1|702050_703766_-	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
SPR05547.1|704447_704750_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR05551.1|704779_705871_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR05557.1|705857_706019_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR05561.1|706056_706638_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR05564.1|706659_707220_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR05570.1|707235_707481_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR05577.1|707516_708194_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR05582.1|708422_708701_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR05587.1|709073_709493_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	37.4	1.4e-17
SPR05593.1|711450_711699_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR05597.1|711658_712003_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR05602.1|712014_712587_+|integrase	integrase	integrase	A0A248XD46	Klebsiella_phage	26.8	6.2e-05
712960:712976	attR	TTTTAATCAATCAGAAA	NA	NA	NA	NA
>prophage 8
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	770805	852584	2319449	tRNA,transposase,integrase	Tupanvirus(18.18%)	88	790363:790384	820575:820596
SPR05899.1|770805_771825_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR05904.1|771834_773589_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05909.1|773592_773943_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR05915.1|773946_774732_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR05922.1|774744_777378_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR05928.1|777377_777857_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR05933.1|778051_778681_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR05938.1|778677_779394_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05944.1|779509_779971_-	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	38.0	5.9e-22
SPR05949.1|780081_781485_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR05955.1|781789_782035_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR05960.1|782070_782748_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR05967.1|782978_783404_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR05974.1|783367_784666_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR05979.1|784662_785046_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR05985.1|785068_786013_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05989.1|786046_786223_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05994.1|786307_786790_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR05999.1|786792_786966_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR06004.1|786962_787241_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR06010.1|787245_788022_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR06014.1|788188_788608_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR06019.1|788607_788943_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06024.1|789010_789481_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR06029.1|789477_789645_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR06034.1|789691_789919_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR06041.1|790343_790844_-	Uncharacterised protein	NA	NA	NA	NA	NA
790363:790384	attL	CCTGAAATTTCTTTCAGGTTGG	NA	NA	NA	NA
SPR06047.1|790952_791489_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR06052.1|791469_792156_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR06057.1|793275_793866_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06063.1|794117_795110_-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))	NA	NA	NA	NA	NA
SPR06068.1|795172_796444_-|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	tRNA	NA	NA	NA	NA
SPR06073.1|796653_797136_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR06078.1|797536_797701_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR06085.1|797717_798293_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR06090.1|798317_798764_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	33.3	1.2e-06
SPR06095.1|798893_799229_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06100.1|799228_799621_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR06108.1|799629_799782_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR06113.1|799948_800251_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06119.1|800327_800486_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR06123.1|800784_801036_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR06129.1|801376_801961_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06135.1|802127_802883_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06140.1|802939_804955_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06145.1|805636_807352_+	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
SPR06151.1|807618_808017_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR06155.1|808089_809100_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.1e-84
SPR06160.1|809218_809797_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR06164.1|810063_813501_-	sodium:proline symporter	NA	NA	NA	NA	NA
SPR06169.1|813919_814039_+|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR06176.1|814191_814395_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06182.1|815124_815757_+	DNA methyltransferase	NA	NA	NA	NA	NA
SPR06188.1|815760_816354_-	membrane protein	NA	NA	NA	NA	NA
SPR06191.1|816401_817046_-	ankyrin	NA	R4TPX0	Phaeocystis_globosa_virus	26.8	4.0e-08
SPR06196.1|817080_817656_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR06200.1|817889_818282_-	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	55.7	1.6e-31
SPR06205.1|818297_819338_-	replicative DNA helicase	NA	G9BWB0	Planktothrix_phage	30.4	1.5e-33
SPR06210.1|819346_821062_-	Uncharacterised protein	NA	NA	NA	NA	NA
820575:820596	attR	CCTGAAATTTCTTTCAGGTTGG	NA	NA	NA	NA
SPR06214.1|821402_821639_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR06218.1|822028_822202_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR06222.1|822325_822520_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06227.1|822582_823335_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
SPR06232.1|823346_825119_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR06236.1|825284_825629_+	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA	NA
SPR06240.1|825629_827081_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
SPR06244.1|827245_829912_-|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	37.5	8.9e-70
SPR06247.1|830044_831658_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06251.1|831659_832292_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06256.1|832302_833193_-	ATPase	NA	NA	NA	NA	NA
SPR06260.1|833207_834746_-	ATP synthase subunit alpha	NA	NA	NA	NA	NA
SPR06265.1|834788_835334_-	ATP synthase subunit delta	NA	NA	NA	NA	NA
SPR06270.1|835428_835875_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A0A2R8FFV2	Cedratvirus	54.7	5.9e-35
SPR06274.1|836041_836587_-	translation initiation factor IF-3	NA	A0A2I7S9Q1	Vibrio_phage	35.2	2.9e-12
SPR06278.1|836597_838544_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	38.2	1.2e-119
SPR06282.1|838803_840135_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
SPR06286.1|840228_841257_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
SPR06289.1|841502_844145_+	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
SPR06293.1|844635_846852_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06298.1|846891_847002_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06302.1|847065_847185_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06305.1|848249_848735_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
SPR06310.1|849090_849501_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06315.1|849849_850062_+	ankyrin	NA	NA	NA	NA	NA
SPR06322.1|850776_851217_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06324.1|851259_851478_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06329.1|851506_851656_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR06334.1|852254_852584_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 9
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	861325	907646	2319449	tRNA,capsid,transposase,integrase	Mannheimia_phage(33.33%)	53	865667:865700	874248:874281
SPR06377.1|861325_862204_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
SPR06382.1|862196_864248_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
SPR06388.1|864225_865194_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	33.8	2.7e-37
865667:865700	attL	TTTTTATGCTCAAACCTCATTGTAAATGACTATA	NA	NA	NA	NA
SPR06391.1|866632_866788_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR06396.1|866765_866912_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR06401.1|868120_868771_+	electron transporter	NA	NA	NA	NA	NA
SPR06405.1|869207_869372_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR06410.1|869388_869964_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR06414.1|869988_870435_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	32.2	4.4e-06
SPR06419.1|870560_870896_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06426.1|870895_871288_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR06432.1|871296_871449_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR06437.1|871445_871910_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06440.1|871966_872608_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	26.5	4.1e-13
SPR06445.1|872716_872911_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR06450.1|873595_873871_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06454.1|874005_874134_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06459.1|875178_875307_-	Uncharacterised protein	NA	NA	NA	NA	NA
874248:874281	attR	TATAGTCATTTACAATGAGGTTTGAGCATAAAAA	NA	NA	NA	NA
SPR06466.1|877130_877550_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06472.1|877539_877833_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06477.1|877823_877994_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06482.1|878093_878840_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06486.1|879174_879666_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
SPR06491.1|879669_880152_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
SPR06496.1|880293_881145_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
SPR06501.1|881146_882013_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
SPR06506.1|881999_882740_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
SPR06511.1|882903_883242_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06517.1|883270_884239_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
SPR06521.1|884294_884804_-	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	24.5	5.9e-07
SPR06526.1|884952_885306_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06531.1|885362_885722_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06538.1|885784_886141_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06543.1|886386_887886_-	ADP/ATP carrier protein	NA	NA	NA	NA	NA
SPR06548.1|888437_888758_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06554.1|888969_889731_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06561.1|890029_891298_-	NADH-quinone oxidoreductase subunit F	NA	NA	NA	NA	NA
SPR06567.1|891315_891870_-	NADH-quinone oxidoreductase subunit E	NA	NA	NA	NA	NA
SPR06572.1|891866_893057_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
SPR06576.1|893068_893659_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
SPR06583.1|893669_894185_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
SPR06588.1|894197_894569_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
SPR06597.1|894785_895004_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06602.1|895273_895456_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06607.1|897226_898072_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06613.1|898354_898507_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR06619.1|898786_898942_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR06623.1|899778_900474_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06629.1|901298_902564_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SPR06634.1|902768_904130_+	cell division protein FtsZ	NA	NA	NA	NA	NA
SPR06642.1|904213_905185_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06646.1|905964_906519_+	peptidase U35	NA	I6S2W2	Marinomonas_phage	43.8	2.9e-23
SPR06650.1|906530_907646_+|capsid	phage major capsid protein	capsid	B0VK33	Azospirillum_phage	39.9	1.4e-53
>prophage 10
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	915480	946884	2319449	transposase,integrase	Streptococcus_phage(25.0%)	37	915760:915779	947038:947057
SPR06706.1|915480_915735_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR06710.1|915716_915941_-|transposase	transposase	transposase	NA	NA	NA	NA
915760:915779	attL	AGTTTCGAAAGAAGTCTATT	NA	NA	NA	NA
SPR06715.1|916221_916347_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06720.1|916511_917702_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06726.1|917705_917900_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06732.1|917908_919336_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.5	6.0e-73
SPR06737.1|919424_921089_-	RNA-binding protein	NA	NA	NA	NA	NA
SPR06743.1|921855_922155_-	DNA methyltransferase	NA	A0A0H3UYZ1	Geobacillus_virus	41.0	6.3e-09
SPR06748.1|922292_922532_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR06754.1|922539_923307_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR06759.1|923492_923987_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR06765.1|924028_924616_+	hydrolase	NA	NA	NA	NA	NA
SPR06770.1|924737_925664_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	60.3	2.6e-85
SPR06776.1|925731_925995_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR06781.1|926359_926821_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR06786.1|926917_927061_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06794.1|927144_927600_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR06797.1|927809_929525_-	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
SPR06802.1|930204_932220_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06806.1|932276_933032_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06812.1|933297_935967_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR06817.1|936018_937062_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR06823.1|937071_938664_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR06828.1|938644_938899_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR06835.1|939093_939723_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR06841.1|939894_940080_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR06848.1|940116_940530_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR06853.1|940561_940741_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR06859.1|941033_941240_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR06865.1|941268_941574_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06870.1|941626_942013_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR06877.1|941991_942603_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR06882.1|942618_942861_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR06887.1|944220_945510_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06894.1|945664_945781_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06899.1|945770_945932_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06902.1|946161_946884_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
947038:947057	attR	AGTTTCGAAAGAAGTCTATT	NA	NA	NA	NA
>prophage 11
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	963007	1008762	2319449	tRNA,integrase,transposase	Geobacillus_virus(16.67%)	55	967223:967246	1007756:1007779
SPR06977.1|963007_963772_+|tRNA	tRNA (guanine(37)-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
SPR06985.1|963768_964143_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
SPR06990.1|964169_966365_+	ATPase AAA	NA	A0A0H3UZA5	Geobacillus_virus	27.4	2.1e-53
967223:967246	attL	TATAGTCATTTACAATGAAGTTTG	NA	NA	NA	NA
SPR06995.1|967367_968270_+	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
SPR07001.1|968262_969147_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
SPR07006.1|969149_969611_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	48.6	1.4e-28
SPR07011.1|969630_970539_+	signal peptide peptidase SppA	NA	NA	NA	NA	NA
SPR07017.1|970549_971458_+	lipoyl synthase	NA	NA	NA	NA	NA
SPR07022.1|971478_971925_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
SPR07028.1|971908_972643_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	28.6	8.2e-18
SPR07034.1|973782_974193_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR07040.1|974146_974353_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR07044.1|974605_974758_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR07047.1|974844_975246_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR07054.1|975301_975637_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07058.1|975636_976188_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR07062.1|976184_976487_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07068.1|976486_976591_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07075.1|976690_977164_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07080.1|977163_977493_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07085.1|977473_978346_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR07090.1|978317_979487_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR07095.1|979685_979964_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR07100.1|980138_980621_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR07107.1|980704_980878_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07112.1|980911_981856_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07116.1|981887_982301_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR07122.1|982337_982523_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR07127.1|982694_983324_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR07134.1|983518_983998_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR07139.1|983997_984753_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR07144.1|984940_985327_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR07150.1|985358_985616_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR07156.1|985621_985966_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR07161.1|986026_986356_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR07166.1|987040_989512_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07173.1|989631_989760_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07178.1|990199_990574_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07183.1|990560_991067_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.0	1.5e-15
SPR07188.1|991082_991385_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07193.1|991338_991737_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07197.1|992115_993207_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07201.1|993216_994176_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR07208.1|994197_995298_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR07214.1|995628_996453_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR07220.1|996467_998486_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR07226.1|999164_1000880_+	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
SPR07231.1|1001089_1001545_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR07237.1|1001628_1001772_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07242.1|1001868_1002153_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR07248.1|1002655_1002775_-|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR07255.1|1003232_1006673_+	sodium:proline symporter	NA	NA	NA	NA	NA
SPR07260.1|1006984_1007212_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR07266.1|1007343_1007592_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07274.1|1007799_1008762_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	3.5e-85
1007756:1007779	attR	CAAACTTCATTGTAAATGACTATA	NA	NA	NA	NA
>prophage 12
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1024281	1060722	2319449	tRNA,transposase	Wolbachia_phage(40.0%)	34	NA	NA
SPR07388.1|1024281_1024407_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07393.1|1024568_1024934_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07398.1|1025064_1025652_+	hydrolase	NA	NA	NA	NA	NA
SPR07403.1|1025773_1026334_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	66.1	3.7e-63
SPR07409.1|1026610_1026844_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	61.7	5.4e-08
SPR07418.1|1027254_1028055_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07423.1|1028277_1028490_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07428.1|1028470_1028653_-	membrane protein	NA	NA	NA	NA	NA
SPR07434.1|1028700_1029345_-	ankyrin	NA	R4TPX0	Phaeocystis_globosa_virus	26.4	3.0e-08
SPR07441.1|1029382_1029958_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR07446.1|1030191_1030323_-	replicative DNA helicase	NA	NA	NA	NA	NA
SPR07451.1|1030336_1031338_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07456.1|1031347_1032043_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07462.1|1032194_1032752_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR07468.1|1034191_1034290_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07473.1|1034659_1036054_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07478.1|1037101_1040329_+	hybrid sensor histidine kinase/response regulator	NA	A0A2K9L0Z8	Tupanvirus	26.3	5.1e-19
SPR07483.1|1040510_1040783_+|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR07488.1|1040933_1041104_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR07494.1|1042314_1043322_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
SPR07499.1|1043890_1044211_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR07503.1|1044453_1045893_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.7	2.1e-70
SPR07509.1|1045901_1046435_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07515.1|1047281_1047461_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR07519.1|1048518_1049031_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07524.1|1050322_1051117_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
SPR07530.1|1051411_1051918_+	peptidase A8	NA	NA	NA	NA	NA
SPR07534.1|1052696_1053020_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR07540.1|1053029_1055339_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR07547.1|1055669_1056473_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR07553.1|1056438_1056888_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR07558.1|1056911_1058318_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR07563.1|1058601_1059720_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR07568.1|1059771_1060722_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 13
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1076909	1107568	2319449	integrase,transposase	Lymantria_dispar_multicapsid_nuclear_polyhedrosis_virus(50.0%)	38	1071607:1071624	1086720:1086737
1071607:1071624	attL	AAGCTAAACAACAATTGA	NA	NA	NA	NA
SPR07657.1|1076909_1077320_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR07663.1|1077273_1077480_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR07668.1|1077732_1077885_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR07673.1|1077971_1078373_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR07682.1|1078428_1078764_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07687.1|1078763_1078907_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR07692.1|1079165_1079318_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR07697.1|1079314_1079617_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07702.1|1079616_1079721_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07707.1|1079820_1080294_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07712.1|1080293_1080623_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07718.1|1080603_1082019_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR07725.1|1082123_1082618_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR07729.1|1082816_1083095_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR07734.1|1083269_1083752_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR07739.1|1083835_1084009_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07747.1|1084042_1084987_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07752.1|1085018_1085432_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR07758.1|1085468_1085654_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR07764.1|1085825_1086455_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR07769.1|1086649_1087129_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
1086720:1086737	attR	AAGCTAAACAACAATTGA	NA	NA	NA	NA
SPR07775.1|1087128_1088181_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR07781.1|1088189_1089767_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR07788.1|1089789_1090935_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR07792.1|1090940_1092695_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07797.1|1092704_1093736_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR07803.1|1093787_1094858_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR07808.1|1095200_1097459_-	conjugal transfer protein TraA	NA	A0A1D8QN22	Lymantria_dispar_multicapsid_nuclear_polyhedrosis_virus	21.4	5.0e-05
SPR07813.1|1097667_1098123_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR07819.1|1098206_1098350_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07824.1|1098446_1098728_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR07829.1|1099307_1100459_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07834.1|1100764_1101169_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07840.1|1101411_1101531_-|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR07847.1|1101981_1105419_+	sodium:proline symporter	NA	NA	NA	NA	NA
SPR07851.1|1105730_1105958_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR07859.1|1106089_1106338_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07866.1|1106545_1107568_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
>prophage 14
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1119607	1191912	2319449	integrase,transposase	Streptococcus_phage(18.18%)	60	1120080:1120107	1198029:1198056
SPR07979.1|1119607_1119994_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR07984.1|1119972_1120584_-|integrase	integrase	integrase	NA	NA	NA	NA
1120080:1120107	attL	TCTTAGTTTTTGGTATATGCCATATTTT	NA	NA	NA	NA
SPR07990.1|1120599_1120842_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR07994.1|1121273_1121705_-	DNA helicase	NA	A0A222ZRG2	Mycobacterium_phage	29.3	2.8e-10
SPR07997.1|1121713_1122247_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08003.1|1123121_1123907_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08007.1|1124071_1126120_+	competence protein ComEC	NA	NA	NA	NA	NA
SPR08012.1|1126786_1128364_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	24.4	1.6e-05
SPR08017.1|1128504_1129977_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
SPR08023.1|1129964_1131848_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08029.1|1133717_1134986_-	ankyrin repeat-containing protein 09	NA	A0A1V0S7N0	Shearwaterpox_virus	27.1	2.8e-05
SPR08034.1|1135740_1136592_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
SPR08040.1|1136598_1137666_-	rod shape-determining protein	NA	NA	NA	NA	NA
SPR08045.1|1137766_1138069_-	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
SPR08049.1|1138071_1138341_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08053.1|1138460_1140440_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08058.1|1140893_1145096_-	spoT ppGpp synthetase	NA	NA	NA	NA	NA
SPR08062.1|1145867_1147895_+	ribonuclease E/G	NA	NA	NA	NA	NA
SPR08068.1|1148226_1148358_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08073.1|1149203_1150919_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08079.1|1150927_1152364_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.0	1.8e-72
SPR08083.1|1152597_1153173_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	30.1	6.2e-05
SPR08089.1|1153207_1153852_+	ankyrin	NA	A0A068ELT3	Penguinpox_virus	28.1	3.4e-07
SPR08095.1|1153899_1154448_+	membrane protein	NA	NA	NA	NA	NA
SPR08100.1|1154451_1155261_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	6.9e-18
SPR08104.1|1155636_1155915_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR08109.1|1155979_1156681_+	histidine kinase	NA	NA	NA	NA	NA
SPR08114.1|1156810_1157611_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR08121.1|1157627_1158560_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR08128.1|1158578_1159073_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR08134.1|1159114_1159702_+	hydrolase	NA	A0A292GI44	Xanthomonas_phage	27.9	2.9e-05
SPR08140.1|1159823_1160906_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	2.0e-84
SPR08145.1|1161013_1161226_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR08150.1|1161506_1162580_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR08174.1|1162676_1162820_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08178.1|1162903_1163359_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR08183.1|1163568_1165284_-	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
SPR08189.1|1165965_1167975_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR08194.1|1168031_1168826_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR08202.1|1169092_1171762_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR08216.1|1171813_1172785_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR08221.1|1172794_1174549_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR08226.1|1174554_1175694_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR08230.1|1175706_1178364_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR08235.1|1178363_1178843_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR08240.1|1179037_1179667_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR08245.1|1179663_1180347_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR08250.1|1180358_1182050_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR08256.1|1182046_1182430_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR08260.1|1182452_1183430_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR08267.1|1183430_1183634_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08272.1|1183720_1184380_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR08277.1|1184376_1186866_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR08282.1|1186846_1187176_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08288.1|1187175_1188498_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR08293.1|1188536_1188872_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08299.1|1189232_1189709_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08305.1|1189705_1190257_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR08310.1|1190256_1190592_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08315.1|1190712_1191912_-|integrase	integrase	integrase	A0A0R6PGY7	Moraxella_phage	25.9	2.1e-26
1198029:1198056	attR	TCTTAGTTTTTGGTATATGCCATATTTT	NA	NA	NA	NA
>prophage 15
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1197861	1260696	2319449	tRNA,integrase,transposase	Streptococcus_phage(21.43%)	50	1192167:1192192	1216451:1216476
1192167:1192192	attL	TTTTTTTCTACCTATTTTCTACCTTT	NA	NA	NA	NA
SPR08346.1|1197861_1198884_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	27.9	4.5e-14
SPR08352.1|1199223_1199682_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08354.1|1199941_1201789_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	35.2	1.7e-35
SPR08362.1|1201772_1203548_-	DNA primase	NA	S5M810	Pseudoalteromonas_phage	45.3	2.7e-14
SPR08368.1|1203987_1204287_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08373.1|1204457_1204673_-|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR08379.1|1205365_1206526_-	DNA-processing protein DprA	NA	S6BFL3	Thermus_phage	34.3	4.2e-24
SPR08384.1|1206568_1207171_-	peroxidase	NA	NA	NA	NA	NA
SPR08388.1|1208555_1208945_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08393.1|1209626_1210766_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR08396.1|1213032_1213560_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08401.1|1213427_1214801_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	38.3	2.6e-65
SPR08406.1|1214809_1215481_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08411.1|1216239_1216371_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08418.1|1217550_1218075_+	Uncharacterised protein	NA	K4ICR8	Acidithiobacillus_phage	26.8	4.2e-08
1216451:1216476	attR	AAAGGTAGAAAATAGGTAGAAAAAAA	NA	NA	NA	NA
SPR08423.1|1218549_1218708_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA	NA
SPR08428.1|1219226_1220219_-	GTPase ObgE	NA	NA	NA	NA	NA
SPR08435.1|1220235_1220613_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08440.1|1220635_1220965_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08446.1|1221140_1221881_-	membrane protein	NA	NA	NA	NA	NA
SPR08451.1|1222228_1222615_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
SPR08456.1|1222632_1224768_+	(p)ppGpp synthetase	NA	U5J9N6	Bacillus_phage	31.0	1.2e-08
SPR08460.1|1224778_1225174_+	holo-ACP synthase	NA	NA	NA	NA	NA
SPR08465.1|1227302_1228970_-	molecular chaperone GroEL	NA	A0A219YK78	uncultured_virus	53.1	1.4e-142
SPR08470.1|1229042_1229327_-	chaperonin	NA	A0A221S4G8	uncultured_virus	46.2	4.0e-13
SPR08475.1|1230261_1231434_+	ankyrin repeat-containing protein 09	NA	Q6VZB8	Canarypox_virus	28.5	1.4e-06
SPR08483.1|1231920_1233375_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	34.6	4.0e-64
SPR08487.1|1234125_1235688_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	35.4	4.9e-28
SPR08492.1|1235980_1236331_+	ribosomal subunit interface protein	NA	NA	NA	NA	NA
SPR08497.1|1237780_1237912_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08502.1|1238246_1238363_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08506.1|1238670_1239342_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08511.1|1239350_1240781_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.8	1.2e-68
SPR08516.1|1241658_1242099_+	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR08520.1|1243100_1243466_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08527.1|1243622_1244015_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR08532.1|1244813_1246262_+	exopolyphosphatase	NA	NA	NA	NA	NA
SPR08537.1|1247365_1248097_+	intradiol ring-cleavage dioxygenase	NA	NA	NA	NA	NA
SPR08542.1|1248711_1251231_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	38.6	7.4e-159
SPR08547.1|1251250_1252270_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SPR08552.1|1252459_1253824_+	magnesium transporter	NA	NA	NA	NA	NA
SPR08558.1|1253923_1255414_-	carboxypeptidase M32	NA	NA	NA	NA	NA
SPR08564.1|1255868_1256021_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08569.1|1256448_1256796_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR08574.1|1257012_1257135_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08579.1|1257367_1257742_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08585.1|1257699_1258566_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08591.1|1258790_1259645_+	ankyrin	NA	NA	NA	NA	NA
SPR08596.1|1259712_1260243_+	membrane protein	NA	NA	NA	NA	NA
SPR08604.1|1260498_1260696_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
>prophage 16
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1273802	1316210	2319449	tRNA,integrase,transposase	Mannheimia_phage(16.67%)	40	1304778:1304793	1318124:1318139
SPR08706.1|1273802_1274825_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	27.9	4.5e-14
SPR08711.1|1274958_1275159_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08716.1|1275457_1278895_-	sodium:proline symporter	NA	NA	NA	NA	NA
SPR08721.1|1279633_1280302_+	DNA polymerase III subunit epsilon	NA	A0A1B2LRV5	Wolbachia_phage	50.0	2.8e-09
SPR08726.1|1280521_1281031_+	CarD family transcriptional regulator	NA	NA	NA	NA	NA
SPR08733.1|1281054_1282089_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	44.6	1.4e-68
SPR08738.1|1282105_1282897_+	NAD kinase	NA	NA	NA	NA	NA
SPR08743.1|1283090_1284320_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08748.1|1284306_1284765_-	protein TolR	NA	NA	NA	NA	NA
SPR08753.1|1284770_1285460_-	protein TolQ	NA	NA	NA	NA	NA
SPR08758.1|1285630_1286650_+	porphobilinogen synthase	NA	NA	NA	NA	NA
SPR08765.1|1286864_1287029_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08771.1|1287357_1288041_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08777.1|1288208_1289813_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08781.1|1290134_1290998_-	peptide chain release factor 1	NA	NA	NA	NA	NA
SPR08786.1|1291389_1293195_+	elongation factor 4	NA	A0A2K9L6L3	Tupanvirus	32.6	3.3e-20
SPR08792.1|1293503_1293764_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08797.1|1293763_1293976_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR08801.1|1294784_1295645_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08806.1|1295724_1296192_-	single-stranded DNA-binding protein	NA	A0A1B1IVU7	uncultured_Mediterranean_phage	50.6	3.8e-37
SPR08810.1|1296563_1297238_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR08815.1|1297694_1297820_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR08821.1|1298329_1298728_-	Aconitate hydratase A	NA	NA	NA	NA	NA
SPR08828.1|1298968_1299187_-	Aconitate hydratase A	NA	NA	NA	NA	NA
SPR08833.1|1299134_1299338_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08838.1|1299558_1300164_+	cytochrome c biogenesis protein CcmA	NA	A0A2H4PQG7	Staphylococcus_phage	26.2	3.5e-06
SPR08845.1|1300160_1300811_+	heme exporter protein B	NA	NA	NA	NA	NA
SPR08851.1|1300964_1302104_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08856.1|1302215_1302881_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
SPR08862.1|1303021_1304218_+	cytochrome b	NA	NA	NA	NA	NA
1304778:1304793	attL	AAACTTCATTATAAAT	NA	NA	NA	NA
SPR08868.1|1304952_1305210_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08873.1|1305642_1308561_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08878.1|1308943_1310227_-	amino acid transporter	NA	NA	NA	NA	NA
SPR08882.1|1311909_1312716_-	uracil-DNA glycosylase	NA	NA	NA	NA	NA
SPR08887.1|1313112_1313439_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08893.1|1313392_1313695_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08900.1|1313743_1314061_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR08905.1|1314114_1314474_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR08910.1|1314891_1315782_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR08915.1|1315733_1316210_+|integrase	integrase	integrase	NA	NA	NA	NA
1318124:1318139	attR	ATTTATAATGAAGTTT	NA	NA	NA	NA
>prophage 17
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1332106	1369511	2319449	transposase	Streptococcus_phage(50.0%)	38	NA	NA
SPR09036.1|1332106_1332331_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR09042.1|1332612_1333065_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09047.1|1333044_1333431_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09053.1|1333601_1335539_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09060.1|1335577_1338181_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09066.1|1338287_1338416_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09071.1|1338697_1339057_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09075.1|1339214_1339472_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR09079.1|1339483_1339987_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR09083.1|1340273_1340897_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09087.1|1340893_1341466_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
SPR09091.1|1341638_1343381_+	potassium transporter	NA	NA	NA	NA	NA
SPR09095.1|1343367_1343859_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09100.1|1344146_1345361_+	aspartate kinase	NA	NA	NA	NA	NA
SPR09104.1|1345710_1346067_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09109.1|1346187_1346319_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09114.1|1346322_1346451_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09118.1|1346866_1346998_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09122.1|1347238_1347346_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09126.1|1347472_1347733_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR09130.1|1348236_1349316_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
SPR09135.1|1349319_1350447_-	cell division protein FtsW	NA	NA	NA	NA	NA
SPR09138.1|1350453_1351872_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
SPR09143.1|1351954_1352581_+	lipoate-protein ligase B	NA	NA	NA	NA	NA
SPR09147.1|1353484_1353646_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR09151.1|1353745_1354432_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR09158.1|1354972_1355254_+	membrane protein	NA	NA	NA	NA	NA
SPR09162.1|1355257_1356067_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	27.1	3.9e-21
SPR09166.1|1356433_1357162_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR09172.1|1357183_1358041_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR09176.1|1358141_1358717_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR09180.1|1358792_1359596_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09184.1|1359654_1360110_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR09190.1|1360318_1362034_-	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
SPR09197.1|1362713_1364732_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR09202.1|1364746_1365571_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR09208.1|1365846_1368510_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR09214.1|1368494_1369511_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 18
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1376953	1405827	2319449	transposase,integrase	Wolbachia_phage(50.0%)	42	1385748:1385763	1412257:1412272
SPR09289.1|1376953_1377880_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	58.7	2.2e-84
SPR09294.1|1377947_1378211_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR09299.1|1378541_1378739_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR09304.1|1378742_1378865_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09309.1|1379566_1380025_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09314.1|1380410_1381538_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09320.1|1381639_1382272_-	DNA methyltransferase	NA	A0A0H3UZK1	Geobacillus_virus	29.6	4.9e-11
SPR09325.1|1382978_1383155_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09331.1|1383398_1383938_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09334.1|1384004_1385039_-	Uncharacterised protein	NA	NA	NA	NA	NA
1385748:1385763	attL	ATGAAAAATTTTTCAT	NA	NA	NA	NA
SPR09338.1|1385939_1386668_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR09343.1|1386689_1386932_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR09349.1|1386935_1387547_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR09355.1|1387647_1387737_+	spoT ppGpp hydrolase	NA	NA	NA	NA	NA
SPR09359.1|1387803_1388001_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR09364.1|1388942_1389686_+	alpha/beta hydrolase superfamily protein	NA	NA	NA	NA	NA
SPR09369.1|1389810_1390071_+	peptide chain release factor RF-2	NA	NA	NA	NA	NA
SPR09373.1|1390257_1390560_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09378.1|1390663_1390864_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09382.1|1391471_1392077_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09386.1|1392068_1394219_-	DNA helicase II	NA	A7KV33	Bacillus_phage	37.2	3.3e-107
SPR09392.1|1394378_1394816_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09397.1|1394827_1395025_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09403.1|1395072_1395201_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09408.1|1395394_1395595_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR09413.1|1396104_1396317_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR09421.1|1396803_1397394_-	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	48.9	1.3e-26
SPR09425.1|1397489_1397618_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR09430.1|1398049_1398292_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR09435.1|1398307_1398919_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR09441.1|1398897_1399284_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR09447.1|1399336_1399642_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09451.1|1399670_1399877_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR09456.1|1400169_1400349_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR09461.1|1400380_1400794_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR09467.1|1400830_1401016_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR09472.1|1401056_1401191_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR09477.1|1401187_1401817_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR09482.1|1402011_1402266_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR09487.1|1402518_1403577_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR09494.1|1403582_1404782_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR09499.1|1404864_1405827_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
1412257:1412272	attR	ATGAAAAATTTTTCAT	NA	NA	NA	NA
>prophage 19
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1414309	1453150	2319449	protease,tRNA,transposase	Wolbachia_phage(16.67%)	36	NA	NA
SPR09574.1|1414309_1415248_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	60.6	1.7e-84
SPR09579.1|1415315_1415771_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR09584.1|1415938_1417945_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR09590.1|1418001_1418796_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR09595.1|1419071_1419629_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR09600.1|1419981_1420176_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR09605.1|1420657_1422829_+	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR09610.1|1423283_1423556_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09616.1|1423565_1425026_-|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	tRNA	NA	NA	NA	NA
SPR09621.1|1425028_1426507_-|tRNA	glutamyl-tRNA(Gln) amidotransferase subunit A	tRNA	NA	NA	NA	NA
SPR09627.1|1426506_1426806_-|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	tRNA	NA	NA	NA	NA
SPR09632.1|1426888_1428625_-	RNase J family beta-CASP ribonuclease	NA	NA	NA	NA	NA
SPR09637.1|1428738_1429476_-	DNA-binding response regulator	NA	A0A0K0PVG9	Roseobacter_phage	57.7	1.9e-14
SPR09642.1|1432467_1432632_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09649.1|1432628_1432823_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09653.1|1433174_1433408_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09658.1|1433540_1433813_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR09663.1|1434336_1434450_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR09668.1|1436017_1436824_+	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
SPR09674.1|1437374_1438025_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.8	4.4e-15
SPR09681.1|1437973_1438234_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09687.1|1438803_1439424_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	59.3	1.3e-59
SPR09692.1|1440173_1440293_+	HNH endonuclease	NA	NA	NA	NA	NA
SPR09699.1|1440808_1441684_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09705.1|1441749_1441944_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09710.1|1442328_1443162_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09716.1|1443300_1444968_+	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	28.0	1.8e-44
SPR09721.1|1445000_1445372_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09727.1|1445462_1447751_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	43.0	3.9e-74
SPR09733.1|1448530_1448971_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09738.1|1449162_1449552_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR09743.1|1449916_1450381_-	ATP synthase subunit b	NA	NA	NA	NA	NA
SPR09748.1|1450393_1450891_-	ATP synthase subunit B	NA	NA	NA	NA	NA
SPR09753.1|1450898_1451123_-	ATP synthase subunit C	NA	NA	NA	NA	NA
SPR09761.1|1451178_1451907_-	ATP synthase subunit A	NA	NA	NA	NA	NA
SPR09766.1|1452964_1453150_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 20
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1490330	1538395	2319449	tRNA,transposase,integrase	Pseudomonas_phage(25.0%)	43	1502829:1502846	1517075:1517092
SPR09977.1|1490330_1490459_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR09983.1|1490640_1490868_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR09988.1|1491285_1491720_-	membrane protein	NA	NA	NA	NA	NA
SPR09993.1|1491728_1492763_-	ferrochelatase	NA	NA	NA	NA	NA
SPR09998.1|1492755_1493784_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
SPR10005.1|1495271_1496777_+	transcription termination factor Rho	NA	NA	NA	NA	NA
SPR10013.1|1497527_1497716_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR10019.1|1498756_1500040_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10024.1|1500680_1502549_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
SPR10031.1|1502692_1503346_-	thymidylate kinase	NA	Q2Z0N0	Pseudomonas_phage	35.8	9.9e-23
1502829:1502846	attL	GTAATTTTTTGATGAAAC	NA	NA	NA	NA
SPR10036.1|1503338_1504412_-	cell division protein ZapE	NA	NA	NA	NA	NA
SPR10044.1|1504482_1505166_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10048.1|1505174_1506539_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
SPR10052.1|1506604_1509337_-	DNA polymerase I	NA	D9ZNH3	Clostridium_phage	31.0	8.3e-39
SPR10057.1|1509707_1511159_-	sodium:pantothenate symporter	NA	NA	NA	NA	NA
SPR10062.1|1511979_1512810_+	protein disulfide-isomerase	NA	NA	NA	NA	NA
SPR10067.1|1512965_1513319_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR10072.1|1513421_1513589_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10078.1|1514413_1514821_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR10083.1|1514863_1515064_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10089.1|1515197_1516442_+|integrase	integrase	integrase	A0A077KGX2	Edwardsiella_phage	24.2	5.0e-15
SPR10095.1|1516565_1516901_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10101.1|1516900_1517452_+	conjugative transfer protein	NA	NA	NA	NA	NA
1517075:1517092	attR	GTTTCATCAAAAAATTAC	NA	NA	NA	NA
SPR10106.1|1517448_1517925_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10113.1|1518099_1518297_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR10118.1|1518430_1518766_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10122.1|1518804_1520127_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10125.1|1520126_1520456_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10131.1|1520436_1522926_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR10136.1|1522922_1523582_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR10143.1|1523668_1523872_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10148.1|1523872_1524850_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10153.1|1524872_1525256_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR10159.1|1525252_1526944_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR10163.1|1527312_1529112_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR10169.1|1529222_1529783_+	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	41.1	5.3e-25
SPR10173.1|1529794_1530511_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10178.1|1530507_1531137_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR10183.1|1531186_1531810_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR10190.1|1531809_1534362_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR10195.1|1534480_1535620_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR10200.1|1535623_1537378_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10205.1|1537387_1538395_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 21
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1548696	1577436	2319449	tRNA,transposase,integrase	uncultured_Mediterranean_phage(27.27%)	32	1569914:1569928	1580731:1580745
SPR10257.1|1548696_1549671_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	6.1e-85
SPR10263.1|1549791_1550379_-	hydrolase	NA	NA	NA	NA	NA
SPR10269.1|1550420_1550915_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10274.1|1550933_1551872_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10279.1|1551888_1552689_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10284.1|1552764_1552881_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10291.1|1552903_1553572_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10296.1|1553586_1554288_-	histidine kinase	NA	NA	NA	NA	NA
SPR10301.1|1554352_1554631_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10308.1|1554997_1555807_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	27.1	7.4e-20
SPR10314.1|1555810_1556359_-	membrane protein	NA	NA	NA	NA	NA
SPR10319.1|1556814_1557900_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10325.1|1558431_1559076_-	ankyrin	NA	A0A2H4X2N8	Flamingopox_virus	26.9	2.8e-06
SPR10330.1|1559110_1559686_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	7.4e-06
SPR10335.1|1559919_1561356_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	1.6e-73
SPR10340.1|1561364_1562930_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10347.1|1563137_1563530_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR10351.1|1563946_1564873_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	37.9	1.7e-36
SPR10357.1|1564956_1567626_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	23.0	7.9e-26
SPR10362.1|1567678_1569211_-	ATP/ADP translocase	NA	NA	NA	NA	NA
SPR10368.1|1569576_1570434_+	rRNA (cytidine-2'-O-)-methyltransferase	NA	NA	NA	NA	NA
1569914:1569928	attL	CTGGAGCTTGTTCTG	NA	NA	NA	NA
SPR10373.1|1570435_1571725_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	4.4e-99
SPR10378.1|1571702_1572470_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	38.7	8.0e-32
SPR10384.1|1572450_1572585_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10390.1|1572615_1573212_+	16S rRNA methyltransferase	NA	NA	NA	NA	NA
SPR10396.1|1573218_1574016_+	chromosome partitioning protein ParA	NA	F0PIG8	Enterococcus_phage	33.0	8.6e-13
SPR10401.1|1574027_1574909_+	chromosome partitioning protein	NA	A0A0F7L836	uncultured_marine_virus	25.3	1.9e-05
SPR10406.1|1575206_1575323_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR10411.1|1575972_1576383_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR10417.1|1576336_1576543_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR10422.1|1576795_1576948_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR10427.1|1577034_1577436_+|integrase	integrase	integrase	NA	NA	NA	NA
1580731:1580745	attR	CTGGAGCTTGTTCTG	NA	NA	NA	NA
>prophage 22
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1597738	1655299	2319449	tRNA,transposase	Pseudomonas_phage(11.11%)	56	NA	NA
SPR10547.1|1597738_1598212_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR10553.1|1598440_1599118_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR10559.1|1599153_1599399_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR10564.1|1599703_1600600_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR10569.1|1600589_1601129_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR10574.1|1601180_1602251_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR10579.1|1602897_1604682_+	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR10584.1|1604899_1605109_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR10589.1|1605050_1605596_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR10595.1|1605678_1606326_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR10600.1|1606335_1606884_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR10604.1|1607565_1609281_+	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
SPR10610.1|1609547_1609946_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR10616.1|1610013_1611012_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
SPR10621.1|1611132_1611720_-	hydrolase	NA	NA	NA	NA	NA
SPR10627.1|1611761_1612256_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10631.1|1612274_1613213_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10635.1|1613243_1613807_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10640.1|1613878_1614154_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10646.1|1614217_1615822_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10652.1|1616116_1617424_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.9	1.4e-63
SPR10657.1|1617432_1619148_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10662.1|1619613_1620006_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR10667.1|1620028_1620259_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR10672.1|1620212_1620557_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10676.1|1620885_1621230_-	(2Fe-2S) ferredoxin	NA	NA	NA	NA	NA
SPR10681.1|1621246_1623100_-	molecular chaperone HscA	NA	F2Y0P3	Organic_Lake_phycodnavirus	35.8	6.8e-69
SPR10686.1|1623086_1623590_-	co-chaperone HscB	NA	NA	NA	NA	NA
SPR10693.1|1623602_1623977_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7N5	Lake_Baikal_phage	42.9	2.1e-14
SPR10698.1|1623986_1624412_-	iron-sulfur cluster scaffold-like protein	NA	A0A218MKD1	uncultured_virus	73.8	1.9e-46
SPR10702.1|1624451_1625723_-	cysteine desulfurase	NA	NA	NA	NA	NA
SPR10708.1|1625737_1627024_-	aminotransferase class V-fold PLP-dependent enzyme	NA	H7BUW1	unidentified_phage	37.8	1.9e-30
SPR10713.1|1627035_1627449_-	iron-sulfur-binding protein	NA	NA	NA	NA	NA
SPR10719.1|1627685_1628387_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
SPR10724.1|1628680_1629928_+	cell division protein FtsA	NA	NA	NA	NA	NA
SPR10729.1|1629906_1631217_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10734.1|1631201_1632953_+	glycosyl transferase	NA	NA	NA	NA	NA
SPR10740.1|1633352_1633838_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR10744.1|1634138_1634315_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR10751.1|1634976_1636278_-	malate dehydrogenase	NA	NA	NA	NA	NA
SPR10757.1|1636297_1637224_-	permease	NA	NA	NA	NA	NA
SPR10762.1|1637528_1638140_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10766.1|1638191_1638575_+	citrate synthase	NA	NA	NA	NA	NA
SPR10771.1|1638853_1638964_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR10776.1|1639439_1639646_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR10780.1|1639683_1640088_-	ATP synthase subunit epsilon	NA	NA	NA	NA	NA
SPR10785.1|1640084_1641521_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
SPR10791.1|1641865_1643005_-	capsule biosynthesis protein CapM	NA	NA	NA	NA	NA
SPR10796.1|1643040_1643808_+	aplha/beta hydrolase	NA	NA	NA	NA	NA
SPR10801.1|1644205_1646203_-	murein transglycosylase	NA	I1VXB7	Halocynthia_phage	39.4	3.4e-05
SPR10806.1|1646244_1647183_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
SPR10811.1|1648345_1648900_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR10816.1|1648970_1649231_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR10821.1|1650796_1650922_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10826.1|1651826_1652861_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	40.7	2.4e-31
SPR10831.1|1652857_1655299_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
>prophage 23
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1660224	1716559	2319449	tRNA,transposase	Streptococcus_phage(21.43%)	58	NA	NA
SPR10855.1|1660224_1660371_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR10862.1|1660830_1662315_-	ankyrin repeat-containing protein 13	NA	A0A1V0S7Q4	Shearwaterpox_virus	27.2	1.7e-09
SPR10866.1|1662720_1662849_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10873.1|1663109_1663547_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10878.1|1663575_1663680_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR10883.1|1664088_1665600_+	ATPase AAA	NA	NA	NA	NA	NA
SPR10888.1|1665932_1666196_+|tRNA	leucine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR10893.1|1666439_1668332_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR10898.1|1668420_1669842_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.9	5.6e-71
SPR10904.1|1669850_1670522_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10909.1|1670829_1670946_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10914.1|1671690_1673478_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10919.1|1673611_1674802_+	Uncharacterised protein	NA	W8ECU7	Geobacillus_phage	37.1	5.4e-59
SPR10924.1|1674820_1675087_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10929.1|1675512_1675752_-	transcriptional regulator	NA	K4K6E9	Caulobacter_phage	41.4	2.3e-06
SPR10934.1|1675930_1677493_+	ScaC autotransporter protein	NA	NA	NA	NA	NA
SPR10939.1|1679176_1679830_+	ankyrin repeat-containing protein 13	NA	NA	NA	NA	NA
SPR10944.1|1680307_1681390_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10948.1|1681550_1681877_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR10953.1|1682506_1683073_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10958.1|1683563_1683737_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10963.1|1684634_1684877_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR10968.1|1685040_1686222_-	Bcr/CflA family drug resistance efflux transporter	NA	S4TR35	Salmonella_phage	22.0	5.2e-14
SPR10973.1|1686707_1686950_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10978.1|1687439_1688609_+	replicative DNA helicase	NA	G9BWB0	Planktothrix_phage	34.7	1.6e-44
SPR10983.1|1688598_1688889_+	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	46.7	9.4e-18
SPR10991.1|1689122_1689548_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR10996.1|1689784_1690054_+	histidine kinase	NA	NA	NA	NA	NA
SPR11000.1|1690068_1690737_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR11003.1|1690759_1690876_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR11009.1|1690951_1691800_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR11014.1|1691985_1692480_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR11022.1|1692521_1692914_+	(p)ppGpp synthetase	NA	A0A292GI44	Xanthomonas_phage	34.7	1.5e-05
SPR11027.1|1693230_1694133_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	57.6	1.0e-86
SPR11032.1|1694202_1694466_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR11038.1|1694796_1695258_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR11042.1|1695354_1695498_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11047.1|1695581_1695980_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR11052.1|1696081_1696408_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11057.1|1696563_1698282_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11062.1|1698290_1699727_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	1.8e-72
SPR11067.1|1699959_1700535_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	32.1	1.3e-05
SPR11072.1|1700569_1701214_+	ankyrin	NA	Q9JML4	Wolbachia_phage	45.0	1.4e-05
SPR11077.1|1701261_1701810_+	membrane protein	NA	NA	NA	NA	NA
SPR11083.1|1701813_1702623_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	2.4e-18
SPR11090.1|1702996_1703374_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR11096.1|1703438_1704140_+	histidine kinase	NA	NA	NA	NA	NA
SPR11101.1|1704154_1704823_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR11106.1|1704845_1704962_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR11111.1|1705036_1705615_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR11116.1|1705631_1706570_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR11121.1|1706588_1707083_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR11126.1|1707124_1707712_+	hydrolase	NA	NA	NA	NA	NA
SPR11130.1|1707833_1708916_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.9	6.7e-85
SPR11134.1|1708983_1709439_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR11139.1|1709717_1712585_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR11144.1|1712860_1715524_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR11150.1|1715575_1716559_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 24
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1734511	1769503	2319449	integrase,transposase	Indivirus(33.33%)	43	1735685:1735703	1765228:1765246
SPR11254.1|1734511_1735831_-|integrase	integrase	integrase	A0A0S2GLI2	Bacillus_phage	24.7	3.5e-11
1735685:1735703	attL	ATAAAATCTTCTAAATCCA	NA	NA	NA	NA
SPR11260.1|1736325_1736553_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11267.1|1737229_1738903_+	Uncharacterised protein	NA	A0A1V0SE83	Indivirus	30.2	4.9e-10
SPR11272.1|1738937_1739426_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11277.1|1739585_1739807_+	Glucosyl-3-phosphoglycerate phosphatase	NA	NA	NA	NA	NA
SPR11282.1|1739820_1740471_-|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	29.1	1.3e-14
SPR11287.1|1740781_1741081_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR11293.1|1741636_1744306_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR11299.1|1744357_1744918_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11304.1|1744933_1745179_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR11309.1|1745214_1745892_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR11316.1|1746120_1746570_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11322.1|1746579_1747590_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR11326.1|1747652_1748171_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR11333.1|1748151_1748406_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR11337.1|1748600_1749230_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR11342.1|1749226_1749361_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR11347.1|1749401_1749587_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR11353.1|1749623_1750424_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR11359.1|1750489_1750759_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR11364.1|1750957_1752127_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR11372.1|1752098_1752971_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR11378.1|1752951_1753281_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11383.1|1753280_1753463_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR11390.1|1753492_1753735_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR11395.1|1753807_1754131_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11400.1|1754449_1755589_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR11406.1|1756413_1757436_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	27.9	4.5e-14
SPR11412.1|1757843_1758620_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11417.1|1758595_1758835_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11422.1|1759280_1759436_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR11427.1|1759464_1759707_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11432.1|1759785_1759959_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11437.1|1759912_1760287_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11443.1|1760309_1760672_-	ribosome-binding factor A	NA	NA	NA	NA	NA
SPR11448.1|1760702_1763246_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	27.1	4.7e-28
SPR11453.1|1763495_1764998_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
SPR11462.1|1765016_1765499_-	ribosome maturation factor	NA	NA	NA	NA	NA
1765228:1765246	attR	ATAAAATCTTCTAAATCCA	NA	NA	NA	NA
SPR11467.1|1766036_1766810_+	ubiquinone biosynthesis protein	NA	NA	NA	NA	NA
SPR11474.1|1766806_1768195_+	ubiquinone biosynthesis protein UbiB	NA	A0A0R6PKQ6	Moraxella_phage	25.9	5.0e-32
SPR11479.1|1768276_1768771_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11485.1|1768724_1769099_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11490.1|1769392_1769503_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 25
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1777170	1897449	2319449	tRNA,transposase,integrase	Bacillus_phage(20.0%)	113	1776745:1776767	1896561:1896602
1776745:1776767	attL	AAACCTCATTGTAAATGACTATA	NA	NA	NA	NA
SPR11514.1|1777170_1777314_+|transposase	transposase	transposase	NA	NA	NA	NA
1776745:1776767	attL	AAACCTCATTGTAAATGACTATA	NA	NA	NA	NA
SPR11519.1|1777485_1779348_-	cytochrome c biogenesis protein	NA	NA	NA	NA	NA
SPR11523.1|1779337_1780606_-	magnesium transporter	NA	NA	NA	NA	NA
SPR11529.1|1781866_1782037_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11535.1|1782136_1782778_+	superoxide dismutase	NA	NA	NA	NA	NA
SPR11540.1|1782818_1785710_+	2-oxoglutarate dehydrogenase subunit E1	NA	NA	NA	NA	NA
SPR11545.1|1785709_1786987_+	dihydrolipoamide succinyltransferase	NA	NA	NA	NA	NA
SPR11551.1|1786992_1788471_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11557.1|1788759_1790061_+	MFS transporter	NA	NA	NA	NA	NA
SPR11561.1|1790127_1790466_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11567.1|1790855_1791680_-	cytochrome c oxidase subunit III	NA	NA	NA	NA	NA
SPR11573.1|1791861_1792839_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.1e-05
SPR11578.1|1792838_1793456_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
SPR11582.1|1793700_1795836_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11587.1|1795883_1796060_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11592.1|1796229_1797429_-	MFS transporter	NA	S4TR35	Salmonella_phage	20.6	3.7e-07
SPR11597.1|1798070_1798484_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11603.1|1798902_1802340_+	sodium:proline symporter	NA	NA	NA	NA	NA
SPR11608.1|1802278_1802554_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11613.1|1802937_1804179_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	27.7	8.2e-18
SPR11618.1|1804302_1804638_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11622.1|1804637_1804772_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR11627.1|1804787_1804955_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR11632.1|1804984_1805167_+	conjugal transfer protein TraB	NA	NA	NA	NA	NA
SPR11637.1|1805166_1805349_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11642.1|1805594_1806635_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR11647.1|1806663_1807653_-	ankyrin repeat-containing protein	NA	Q6VZ29	Canarypox_virus	29.9	2.0e-11
SPR11652.1|1807807_1807957_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR11657.1|1807960_1808617_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR11662.1|1808691_1809024_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR11668.1|1809312_1809438_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11673.1|1809777_1809894_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11678.1|1810201_1810873_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11684.1|1810881_1811892_+	replicative DNA helicase	NA	G9BWB0	Planktothrix_phage	29.4	7.6e-30
SPR11689.1|1812015_1812327_+	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	48.5	3.4e-21
SPR11694.1|1812560_1813136_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	36.2	6.2e-05
SPR11699.1|1813220_1813478_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11704.1|1813973_1815848_+	repeat-containing protein D	NA	NA	NA	NA	NA
SPR11709.1|1816659_1817325_-	septal ring lytic transglycosylase RlpA family lipoprotein	NA	F5B3X9	Synechococcus_phage	40.2	4.2e-13
SPR11714.1|1817973_1818081_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11719.1|1818334_1819201_+	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
SPR11726.1|1819864_1820653_-	DNA-binding protein	NA	NA	NA	NA	NA
SPR11732.1|1820664_1822200_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	39.4	1.0e-94
SPR11737.1|1822386_1824327_+	primosomal protein N'	NA	NA	NA	NA	NA
SPR11745.1|1824642_1824930_+	type VI secretion protein	NA	NA	NA	NA	NA
SPR11749.1|1824940_1827358_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA	NA
SPR11754.1|1827357_1829805_+	type VI secretion protein	NA	NA	NA	NA	NA
SPR11758.1|1829826_1833708_+	type VI secretion protein	NA	NA	NA	NA	NA
SPR11763.1|1833761_1837034_+	type VI secretion protein	NA	NA	NA	NA	NA
SPR11769.1|1837026_1839591_+	type VI secretion protein	NA	NA	NA	NA	NA
SPR11774.1|1839627_1840881_+	MFS transporter	NA	NA	NA	NA	NA
SPR11779.1|1840908_1842951_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	36.4	1.0e-97
SPR11785.1|1843077_1844478_+|tRNA	glutamate--tRNA ligase 2	tRNA	NA	NA	NA	NA
SPR11791.1|1844542_1845979_+|tRNA	cysteine--tRNA ligase	tRNA	H2EDD6	Moumouvirus	33.1	5.0e-51
SPR11796.1|1846126_1846348_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11802.1|1846365_1846968_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11809.1|1847632_1847899_+|transposase	transposase	transposase	NA	NA	NA	NA
1847256:1847278	attR	TATAGTCATTTACAATGAGGTTT	NA	NA	NA	NA
SPR11815.1|1847947_1848166_+|transposase	transposase	transposase	NA	NA	NA	NA
1847256:1847278	attR	TATAGTCATTTACAATGAGGTTT	NA	NA	NA	NA
SPR11828.1|1848304_1848982_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11837.1|1849041_1850394_+	Outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
SPR11842.1|1850794_1851322_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR11847.1|1852389_1852560_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
SPR11853.1|1852568_1852892_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
SPR11859.1|1854409_1854643_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11865.1|1854857_1855055_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11871.1|1856094_1856190_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11877.1|1856815_1857181_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
SPR11881.1|1857200_1857407_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
SPR11887.1|1857851_1859744_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	30.9	2.1e-89
SPR11894.1|1859908_1861075_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
SPR11899.1|1861226_1862696_+	trigger factor	NA	NA	NA	NA	NA
SPR11907.1|1863218_1864889_-	multidrug ABC transporter permease	NA	W8CYL7	Bacillus_phage	29.0	5.2e-44
SPR11912.1|1864997_1865747_-	transcriptional regulator	NA	W8CYM9	Bacillus_phage	27.5	1.2e-11
SPR11917.1|1866039_1866396_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
SPR11922.1|1866441_1866750_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
SPR11927.1|1866792_1867308_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
SPR11933.1|1867474_1868950_+	ATPase AAA	NA	NA	NA	NA	NA
SPR11938.1|1870315_1870456_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR11943.1|1870510_1870786_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR11950.1|1870794_1871220_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR11955.1|1871275_1871494_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR11962.1|1872016_1872577_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11967.1|1873163_1873346_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11973.1|1874788_1876132_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11978.1|1876365_1877475_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
SPR11983.1|1877722_1877815_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11988.1|1877878_1878025_+	Propionyl-CoA carboxylase beta chain	NA	NA	NA	NA	NA
SPR11993.1|1878166_1878310_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11998.1|1878406_1878856_+	Propionyl-CoA carboxylase beta chain	NA	NA	NA	NA	NA
SPR12004.1|1878862_1879081_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12011.1|1879358_1879607_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12016.1|1879823_1880144_+	Acetyl-/propionyl-coenzyme A carboxylase alpha chain	NA	NA	NA	NA	NA
SPR12022.1|1880185_1880284_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12027.1|1880768_1881050_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12032.1|1881102_1881318_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR12037.1|1881476_1881773_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR12042.1|1881847_1882003_+	hydrolase	NA	NA	NA	NA	NA
SPR12046.1|1882925_1883276_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12050.1|1884213_1884423_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12056.1|1884491_1885964_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
SPR12061.1|1885973_1887464_-	cation:proton antiporter	NA	NA	NA	NA	NA
SPR12067.1|1887456_1887852_-	cation:proton antiporter	NA	NA	NA	NA	NA
SPR12073.1|1887835_1888270_-	sodium:proton antiporter	NA	NA	NA	NA	NA
SPR12078.1|1888290_1888878_-	sodium:proton antiporter	NA	NA	NA	NA	NA
SPR12084.1|1888877_1889207_-	sodium:proton antiporter	NA	NA	NA	NA	NA
SPR12090.1|1889759_1890620_-	haloacid dehalogenase	NA	NA	NA	NA	NA
SPR12096.1|1890734_1893158_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	34.0	2.1e-110
SPR12103.1|1893197_1893722_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12108.1|1894027_1895446_+	amino acid permease	NA	NA	NA	NA	NA
SPR12113.1|1896290_1896473_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR12118.1|1896582_1896711_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12123.1|1897071_1897188_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12129.1|1897323_1897449_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
>prophage 26
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1901666	1961244	2319449	tRNA,transposase,integrase	Acinetobacter_phage(25.0%)	60	1912287:1912315	1970713:1970741
SPR12149.1|1901666_1901867_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12155.1|1902005_1902260_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12160.1|1902309_1902537_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12164.1|1902523_1902898_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12170.1|1903079_1905929_-	cell surface protein	NA	NA	NA	NA	NA
SPR12175.1|1906062_1906728_-	guanylate kinase	NA	V9VFN5	Lactococcus_phage	37.7	1.3e-09
SPR12182.1|1906936_1907710_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12187.1|1908472_1908829_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA	NA
SPR12193.1|1908886_1910239_-	signal recognition particle protein	NA	D6PHS7	uncultured_phage	26.8	3.9e-05
SPR12198.1|1911334_1911616_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12202.1|1911669_1911909_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
1912287:1912315	attL	AGCAGAAAAATAACTTTACAACCAACAGA	NA	NA	NA	NA
SPR12208.1|1913397_1913769_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12213.1|1913796_1913934_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12220.1|1914990_1915377_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12227.1|1916138_1916816_+	histidine phosphotransferase	NA	NA	NA	NA	NA
SPR12233.1|1916879_1918280_+	class II fumarate hydratase	NA	NA	NA	NA	NA
SPR12238.1|1918446_1919925_-	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	29.1	7.2e-37
SPR12245.1|1921326_1921518_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12250.1|1922201_1922438_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR12256.1|1923172_1924648_-	ankyrin repeat-containing protein 13	NA	NA	NA	NA	NA
SPR12261.1|1925297_1925651_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12266.1|1925629_1926160_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12272.1|1926144_1927329_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR12277.1|1927337_1928390_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR12284.1|1928389_1928869_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12291.1|1929063_1929693_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12295.1|1929689_1930406_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12300.1|1930521_1930980_-	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	40.1	1.4e-23
SPR12305.1|1931089_1932085_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR12310.1|1932336_1932618_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR12317.1|1933046_1933496_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR12322.1|1933673_1933904_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR12328.1|1933872_1934244_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR12332.1|1934506_1934659_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12337.1|1934843_1935983_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR12343.1|1936394_1937288_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12348.1|1937241_1937472_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12353.1|1937452_1937797_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR12358.1|1937798_1939046_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12363.1|1939055_1939505_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12370.1|1939733_1940411_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR12376.1|1940446_1940692_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR12381.1|1940996_1941893_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR12386.1|1941882_1942422_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12391.1|1942473_1943592_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR12398.1|1943875_1946707_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR12402.1|1946985_1947441_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12407.1|1947529_1948075_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12411.1|1948160_1948736_-	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	27.7	2.1e-05
SPR12418.1|1948836_1949694_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR12424.1|1949668_1950445_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR12431.1|1950811_1951111_+	DNA methyltransferase	NA	A0A0H3UYZ1	Geobacillus_virus	39.7	2.4e-08
SPR12436.1|1951520_1952396_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12442.1|1952503_1953670_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12449.1|1953688_1954945_-	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR12454.1|1956209_1956317_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR12459.1|1956294_1956603_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR12464.1|1956844_1958617_-	aminopeptidase	NA	A0A0P0I8D7	Acinetobacter_phage	35.6	1.6e-96
SPR12469.1|1958613_1960713_-	DNA ligase (NAD(+)) LigA	NA	A0A1W6DX16	Sphingobium_phage	36.1	2.2e-100
SPR12474.1|1960776_1961244_-|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
1970713:1970741	attR	AGCAGAAAAATAACTTTACAACCAACAGA	NA	NA	NA	NA
>prophage 27
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	1971822	2013306	2319449	protease,tRNA,transposase,integrase	Acanthocystis_turfacea_Chlorella_virus(12.5%)	48	1970713:1970736	1983381:1983404
1970713:1970736	attL	AGCAGAAAAATAACTTTACAACCA	NA	NA	NA	NA
SPR12530.1|1971822_1971939_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12535.1|1972357_1972561_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR12539.1|1972750_1973491_-	ribonuclease III	NA	M1HK80	Acanthocystis_turfacea_Chlorella_virus	30.5	2.3e-20
SPR12544.1|1973545_1974286_-	S26 family signal peptidase	NA	NA	NA	NA	NA
SPR12551.1|1974843_1975326_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR12555.1|1975728_1975905_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR12559.1|1975907_1976018_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR12563.1|1976138_1976951_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	29.0	2.0e-17
SPR12567.1|1977074_1977410_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12571.1|1977409_1977544_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12575.1|1977559_1977727_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12580.1|1977756_1977939_+	conjugal transfer protein TraB	NA	NA	NA	NA	NA
SPR12586.1|1977938_1978121_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12590.1|1978383_1979088_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12594.1|1978891_1979635_-	ankyrin repeat-containing protein	NA	Q6VZ29	Canarypox_virus	29.7	1.2e-11
SPR12598.1|1979616_1979847_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12603.1|1979993_1980260_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR12607.1|1981084_1981219_+|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR12611.1|1981187_1981541_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12617.1|1981718_1981904_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12627.1|1982967_1983093_-	50S ribosomal protein L36	NA	NA	NA	NA	NA
SPR12631.1|1983829_1983931_+	Uncharacterised protein	NA	NA	NA	NA	NA
1983381:1983404	attR	AGCAGAAAAATAACTTTACAACCA	NA	NA	NA	NA
SPR12635.1|1984180_1984507_-	thiol reductase thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	45.5	5.8e-16
SPR12641.1|1984529_1986848_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
SPR12645.1|1986860_1987922_-|protease	zinc metalloprotease	protease	NA	NA	NA	NA
SPR12649.1|1988031_1989381_-	DNA recombination protein RmuC	NA	NA	NA	NA	NA
SPR12653.1|1989441_1990263_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase	NA	NA	NA	NA	NA
SPR12657.1|1990391_1991267_-	Chaperone SurA	NA	NA	NA	NA	NA
SPR12662.1|1991449_1991758_-	DNA-binding protein	NA	A7KV42	Bacillus_phage	37.1	2.0e-10
SPR12667.1|1992293_1993190_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR12672.1|1993186_1994395_-	poly(A) polymerase	NA	A0A2L0UZ92	Agrobacterium_phage	41.6	1.3e-33
SPR12677.1|1994447_1995644_-	sodium:proton antiporter	NA	NA	NA	NA	NA
SPR12681.1|1995824_1999292_-	ATP-dependent DNA helicase UvrD	NA	NA	NA	NA	NA
SPR12685.1|1999304_1999778_-	phosphohistidine phosphatase	NA	NA	NA	NA	NA
SPR12689.1|1999859_2000711_-	dihydrodipicolinate reductase	NA	NA	NA	NA	NA
SPR12694.1|2000717_2001521_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR12698.1|2001946_2002474_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
SPR12702.1|2002753_2002960_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
SPR12706.1|2003056_2003422_+	membrane protein	NA	NA	NA	NA	NA
SPR12710.1|2003789_2004710_-	GTPase Era	NA	NA	NA	NA	NA
SPR12715.1|2004706_2005729_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12720.1|2005933_2007013_-	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	37.5	5.3e-05
SPR12724.1|2007405_2007720_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12728.1|2008246_2008948_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
SPR12732.1|2008967_2009753_-	extragenic suppressor protein SuhB	NA	NA	NA	NA	NA
SPR12737.1|2009749_2010319_-	elongation factor P	NA	NA	NA	NA	NA
SPR12742.1|2010523_2011777_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.6	2.0e-120
SPR12747.1|2012004_2013306_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
>prophage 28
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	2024377	2081208	2319449	transposase,integrase	Bacillus_phage(12.5%)	53	2045275:2045295	2082943:2082963
SPR12780.1|2024377_2024758_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12784.1|2024770_2025079_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12787.1|2025434_2027162_-	ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.8	3.3e-41
SPR12790.1|2027154_2027487_-	iron donor protein CyaY	NA	NA	NA	NA	NA
SPR12796.1|2028612_2032719_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12800.1|2032940_2033312_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12804.1|2033577_2034057_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12810.1|2034057_2034300_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12814.1|2035507_2035858_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA	NA
SPR12818.1|2035888_2036278_+	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA	NA
SPR12821.1|2036472_2038260_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
SPR12825.1|2038294_2039080_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
SPR12830.1|2039106_2039388_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12833.1|2039691_2040087_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12838.1|2040921_2041983_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12841.1|2041991_2042114_+	DNA helicase	NA	NA	NA	NA	NA
SPR12845.1|2043156_2043606_-	ribose-5-phosphate isomerase	NA	NA	NA	NA	NA
SPR12851.1|2044073_2044445_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12856.1|2044865_2045669_-	ATP-binding protein	NA	NA	NA	NA	NA
2045275:2045295	attL	TTTTGTATGCTAAATTTTTTT	NA	NA	NA	NA
SPR12860.1|2045643_2046420_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR12864.1|2046793_2047603_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	2.2e-19
SPR12868.1|2047606_2048110_-	membrane protein	NA	NA	NA	NA	NA
SPR12870.1|2048207_2048708_-	ankyrin	NA	A0A2H4X2N8	Flamingopox_virus	26.5	6.4e-06
SPR12875.1|2049069_2049873_-	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	43.7	1.1e-47
SPR12879.1|2050145_2050517_-	replicative DNA helicase	NA	G9BWB0	Planktothrix_phage	31.0	3.5e-09
SPR12883.1|2050525_2051197_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12887.1|2051764_2052979_+|integrase	integrase	integrase	A0A2D1GNR7	Pseudomonas_phage	25.1	2.9e-20
SPR12892.1|2053108_2053444_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12895.1|2053443_2054001_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12901.1|2053990_2054467_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12906.1|2054884_2055211_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12910.1|2055253_2055520_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12914.1|2055529_2056579_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12921.1|2056578_2056908_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12925.1|2056888_2058901_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12929.1|2059099_2059378_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12933.1|2059374_2060034_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR12937.1|2060118_2060295_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12941.1|2060328_2061273_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12944.1|2061295_2061679_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR12947.1|2061675_2063367_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR12950.1|2063378_2064062_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12952.1|2064058_2065360_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12956.1|2065359_2067987_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR12960.1|2067983_2069138_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR12964.1|2069143_2070898_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12967.1|2070907_2071939_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12970.1|2071990_2074663_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR12973.1|2074931_2077760_-	conjugal transfer protein TraA	NA	Q7T5H7	Cryptophlebia_leucotreta_granulosis_virus	24.1	1.3e-05
SPR12976.1|2078038_2078494_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12979.1|2078563_2079532_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12982.1|2079830_2080007_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR12986.1|2080173_2081208_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	2.4e-84
2082943:2082963	attR	TTTTGTATGCTAAATTTTTTT	NA	NA	NA	NA
>prophage 29
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	2135963	2175607	2319449	transposase	Bordetella_phage(22.22%)	49	NA	NA
SPR13236.1|2135963_2136182_-|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR13239.1|2136321_2136432_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13243.1|2136407_2136530_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13245.1|2136707_2137058_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13249.1|2137062_2137827_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13252.1|2138009_2138423_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13255.1|2138360_2138618_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13260.1|2138656_2139058_-	ankyrin repeat-containing protein 09	NA	NA	NA	NA	NA
SPR13263.1|2139092_2139269_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13266.1|2139277_2140288_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13269.1|2140365_2140560_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13272.1|2140565_2140946_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR13275.1|2141417_2141642_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR13277.1|2141623_2141944_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR13279.1|2142280_2142448_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13282.1|2142444_2142537_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13284.1|2142533_2142698_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR13287.1|2143102_2144119_-	octaprenyl-diphosphate synthase	NA	A0A1V0SE37	Indivirus	27.2	2.3e-10
SPR13289.1|2144138_2145953_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13292.1|2145952_2147497_-	ATPase AAA	NA	NA	NA	NA	NA
SPR13294.1|2147651_2149055_-	ATP/ADP translocase	NA	NA	NA	NA	NA
SPR13296.1|2149699_2150014_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR13299.1|2150678_2150828_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13301.1|2151024_2151216_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
SPR13304.1|2151356_2151623_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13306.1|2151623_2151830_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13309.1|2152916_2154455_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
SPR13312.1|2154492_2156247_-	type I secretion system permease/ATPase	NA	W8CYL7	Bacillus_phage	37.7	2.0e-25
SPR13313.1|2157700_2159215_+	lipid II flippase MurJ	NA	NA	NA	NA	NA
SPR13316.1|2159251_2159632_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13318.1|2161006_2162200_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13320.1|2162406_2163114_-	ankyrin	NA	R4TPX0	Phaeocystis_globosa_virus	27.2	3.7e-07
SPR13323.1|2163151_2163727_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	30.9	1.6e-05
SPR13325.1|2163959_2164091_-	replicative DNA helicase	NA	NA	NA	NA	NA
SPR13327.1|2164251_2164998_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13330.1|2165006_2166443_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	1.8e-72
SPR13332.1|2166675_2167251_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	32.1	1.3e-05
SPR13334.1|2167285_2167930_+	ankyrin	NA	A0A068ELT3	Penguinpox_virus	27.5	5.7e-07
SPR13337.1|2167977_2168484_+	membrane protein	NA	NA	NA	NA	NA
SPR13340.1|2168487_2169297_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	29.5	1.0e-21
SPR13342.1|2169663_2169942_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR13344.1|2170006_2170708_+	histidine kinase	NA	NA	NA	NA	NA
SPR13346.1|2170722_2171391_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR13349.1|2171413_2171530_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR13351.1|2171605_2172406_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR13352.1|2172422_2173358_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR13353.1|2173376_2173871_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR13355.1|2173912_2174500_+	hydrolase	NA	NA	NA	NA	NA
SPR13358.1|2174620_2175607_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
>prophage 30
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	2185771	2229009	2319449	transposase,integrase	Moraxella_phage(25.0%)	50	2209273:2209332	2229066:2229181
SPR13371.1|2185771_2186146_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13373.1|2186132_2186639_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	2.2e-14
SPR13375.1|2186670_2186880_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13377.1|2187136_2188591_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR13379.1|2188642_2189602_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13382.1|2189611_2191366_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13384.1|2191369_2192266_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR13386.1|2192276_2192477_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR13388.1|2192501_2195120_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR13390.1|2195119_2195599_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR13393.1|2195793_2196423_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR13395.1|2196419_2196866_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13397.1|2197023_2197149_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13399.1|2197160_2197658_-	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	38.2	1.5e-15
SPR13402.1|2197721_2197949_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13404.1|2197935_2198310_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13405.1|2198552_2199449_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR13408.1|2199702_2201391_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR13410.1|2201387_2201771_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR13412.1|2201793_2202321_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13415.1|2202378_2202606_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13417.1|2202760_2203765_+	ankyrin repeat-containing protein	NA	A0A2H4X2Q6	Flamingopox_virus	29.8	3.6e-08
SPR13419.1|2203663_2205466_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR13421.1|2205446_2205776_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13426.1|2205775_2207098_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13428.1|2207084_2207489_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13430.1|2207907_2208384_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13432.1|2208513_2208933_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR13434.1|2208932_2209268_-	Uncharacterised protein	NA	NA	NA	NA	NA
2209273:2209332	attL	CTACTATAATGTTTAAATTAACTAAATATCTTCAAACGCAGATTTTACCTGTGATAATTA	NA	NA	NA	NA
SPR13436.1|2209388_2210588_-|integrase	integrase	integrase	A0A0R6PGY7	Moraxella_phage	25.9	2.1e-26
SPR13438.1|2211086_2211686_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13441.1|2211987_2213166_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	35.1	4.8e-52
SPR13443.1|2213389_2215099_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13446.1|2215112_2215244_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR13448.1|2215477_2216053_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR13450.1|2216090_2216735_+	ankyrin	NA	A0A068ELT3	Penguinpox_virus	27.5	7.5e-07
SPR13454.1|2216781_2216955_+	membrane protein	NA	NA	NA	NA	NA
SPR13456.1|2217252_2218392_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR13458.1|2218915_2219182_-	Uncharacterised protein	NA	A0A0U4J920	Pseudomonas_phage	47.2	2.2e-13
SPR13460.1|2219615_2219753_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13463.1|2220519_2220774_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13465.1|2221556_2221679_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13467.1|2222262_2223417_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SPR13469.1|2223461_2223677_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13472.1|2223618_2223741_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13474.1|2223840_2223978_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13476.1|2224439_2225075_+	transporter	NA	NA	NA	NA	NA
SPR13478.1|2225185_2225935_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13480.1|2226708_2227293_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13483.1|2227809_2229009_+|integrase	integrase	integrase	A0A0R6PGY7	Moraxella_phage	25.9	2.1e-26
2229066:2229181	attR	TAATTATCACAGGTAAAATCTGCGTTTGAAGATATTTAGTTAATTTAAACATTATAGTAGATGCGTCAAGGTAAGGTGAATTAATCTTACTGGTGAAAGACCAGTTATGGAAGGAG	NA	NA	NA	NA
>prophage 31
LS398550	Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I	2319449	2239373	2290781	2319449	tRNA,transposase,integrase	Mannheimia_phage(33.33%)	56	2252690:2252706	2290870:2290886
SPR13503.1|2239373_2239577_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13505.1|2240002_2240893_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR13508.1|2240844_2241093_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR13509.1|2241376_2241712_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13511.1|2241938_2242265_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR13514.1|2242261_2242738_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13516.1|2242854_2242986_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13518.1|2243204_2243693_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13520.1|2243689_2244016_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR13522.1|2244099_2244243_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR13524.1|2244242_2244578_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13526.1|2244861_2245110_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR13528.1|2245061_2245403_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR13530.1|2245612_2245957_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR13533.1|2246464_2249902_-	sodium:proline symporter	NA	NA	NA	NA	NA
SPR13535.1|2251047_2252607_-	isocitrate dehydrogenase	NA	NA	NA	NA	NA
2252690:2252706	attL	TTTTTATACTAATTTAT	NA	NA	NA	NA
SPR13537.1|2252779_2253676_+	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
SPR13539.1|2253987_2255208_+	proline/betaine transporter	NA	NA	NA	NA	NA
SPR13542.1|2256239_2258009_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR13544.1|2258561_2260430_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13546.1|2260994_2262008_-	threonine dehydratase	NA	NA	NA	NA	NA
SPR13548.1|2262124_2264497_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	43.3	6.5e-173
SPR13551.1|2264560_2265211_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
SPR13554.1|2265340_2266087_-	amidophosphoribosyltransferase	NA	NA	NA	NA	NA
SPR13556.1|2266070_2267108_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
SPR13558.1|2267177_2267795_+	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	41.9	1.4e-23
SPR13560.1|2268360_2268606_+	Uncharacterised protein	NA	B0VK10	Azospirillum_phage	46.7	5.0e-12
SPR13562.1|2268890_2269064_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR13564.1|2269347_2269890_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	29.0	5.7e-08
SPR13566.1|2270027_2270126_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13569.1|2270132_2270264_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13571.1|2270394_2270538_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13573.1|2270634_2270994_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR13575.1|2271446_2272610_-	guanosine polyphosphate pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	28.3	8.5e-09
SPR13577.1|2273648_2273768_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13579.1|2274129_2274774_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13581.1|2274874_2275726_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
SPR13583.1|2275781_2276342_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13586.1|2276351_2277944_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13587.1|2277924_2278179_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR13590.1|2278373_2279003_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR13592.1|2278999_2279716_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13594.1|2279910_2281200_-	ankyrin repeat-containing protein 16	NA	NA	NA	NA	NA
SPR13596.1|2281359_2283054_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR13598.1|2283050_2283434_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR13600.1|2283456_2284401_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13603.1|2284434_2284608_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13605.1|2284691_2285351_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR13607.1|2285347_2285626_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR13609.1|2285824_2286994_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR13611.1|2286965_2288072_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR13613.1|2288171_2288276_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13616.1|2288275_2288578_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13618.1|2288574_2289126_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13620.1|2289125_2289461_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13622.1|2289581_2290781_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	27.0	1.6e-18
2290870:2290886	attR	TTTTTATACTAATTTAT	NA	NA	NA	NA
