The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	0	59497	4160081	tRNA,transposase	Natrialba_phage(12.5%)	55	NA	NA
SPR44777.1|0_1920_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein	tRNA	NA	NA	NA	NA
SPR44778.1|1916_2609_+	glucose inhibited division protein B	NA	NA	NA	NA	NA
SPR44779.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
SPR44780.1|3409_4171_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SPR44781.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
SPR44782.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
SPR44783.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
SPR44784.1|8249_8531_+	preprotein translocase SecE subunit	NA	NA	NA	NA	NA
SPR44785.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
SPR44786.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SPR44787.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SPR44788.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
SPR44789.1|11160_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
SPR44790.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
SPR44791.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
SPR44792.1|20126_20588_-	lipoprotein	NA	NA	NA	NA	NA
SPR44793.1|20876_21947_+	membrane protein	NA	NA	NA	NA	NA
SPR44794.1|22269_24351_-	histidine kinase	NA	NA	NA	NA	NA
SPR44795.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
SPR44796.1|25685_26201_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR44797.1|26575_27286_+	two component system response regulator	NA	NA	NA	NA	NA
SPR44798.1|27282_28233_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44799.1|28674_29103_-	hypothetical protein	NA	NA	NA	NA	NA
SPR44800.1|29141_30353_-	thiolase	NA	NA	NA	NA	NA
SPR44801.1|30364_30862_-	MaoC family protein	NA	NA	NA	NA	NA
SPR44802.1|31069_32005_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR44803.1|32178_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
SPR44804.1|33048_34470_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44805.1|34625_35576_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44806.1|35674_36625_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44807.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
SPR44808.1|37998_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
SPR44809.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
SPR44810.1|41109_41649_+	D-glycero-beta-D-manno-heptose 17-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
SPR44811.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SPR44812.1|42367_43261_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44813.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
SPR44814.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
SPR44815.1|44712_45663_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44816.1|46273_46798_+	exported protein	NA	NA	NA	NA	NA
SPR44817.1|46769_47006_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR44818.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
SPR44819.1|48030_48480_-	partial	NA	NA	NA	NA	NA
SPR44820.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
SPR44821.1|50440_51055_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44822.1|51190_52141_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44823.1|52228_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
SPR44824.1|53551_54277_+	partial	NA	NA	NA	NA	NA
SPR44825.1|54299_54614_+	outer membrane porin protein precursor	NA	NA	NA	NA	NA
SPR44826.1|54671_55406_-	aspartate/glutamate racemase	NA	NA	NA	NA	NA
SPR44827.1|55411_56002_-	glutamate/aspartate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
SPR44828.1|56026_56716_-	glutamate/aspartate ABC transporter permease	NA	NA	NA	NA	NA
SPR44829.1|56712_57474_-	glutamate/aspartate ABC transporter permease	NA	NA	NA	NA	NA
SPR44830.1|57553_58453_-	glutamate/aspartate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR44831.1|58546_59497_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 2
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	70134	124171	4160081	tRNA,transposase	Planktothrix_phage(20.0%)	54	NA	NA
SPR44841.1|70134_71085_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44842.1|71190_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
SPR44843.1|72685_74593_+	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
SPR44844.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
SPR44845.1|75406_75988_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
SPR44846.1|76076_76328_-	exported protein	NA	NA	NA	NA	NA
SPR44847.1|76329_77172_-	membrane protein	NA	NA	NA	NA	NA
SPR44848.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
SPR44849.1|78683_79634_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44850.1|79762_80653_+|transposase	transposase IS1002 family	transposase	NA	NA	NA	NA
SPR44851.1|80649_82524_-	lipopolysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
SPR44852.1|83871_84576_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
SPR44853.1|84572_85631_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
SPR44854.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
SPR44855.1|86530_87718_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
SPR44856.1|87780_89040_-	glycosyl transferase family protein	NA	NA	NA	NA	NA
SPR44857.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
SPR44858.1|90159_91260_-	lipopolysaccharide biosynthesis protein	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
SPR44859.1|91263_91839_-	probable acetyltransferase	NA	NA	NA	NA	NA
SPR44860.1|91842_92895_-	probable oxidoreductase	NA	NA	NA	NA	NA
SPR44861.1|93025_94033_+	heptosyltransferase	NA	NA	NA	NA	NA
SPR44862.1|94034_95321_+	3-deoxy-D-manno-octulosonic-acid transferase	NA	NA	NA	NA	NA
SPR44863.1|95337_95493_-	exported protein	NA	NA	NA	NA	NA
SPR44864.1|95517_96321_-	pantothenate kinase	NA	NA	NA	NA	NA
SPR44865.1|96317_97160_-	biotin--protein ligase	NA	NA	NA	NA	NA
SPR44866.1|97258_98389_+	integral membrane protein	NA	NA	NA	NA	NA
SPR44867.1|98388_99228_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
SPR44868.1|99381_99606_-	hypothetical protein	NA	NA	NA	NA	NA
SPR44869.1|100166_100763_+	exported protein	NA	NA	NA	NA	NA
SPR44870.1|100792_101446_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44871.1|101656_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	5.8e-66
SPR44872.1|102915_103782_+	cytochrome c550	NA	NA	NA	NA	NA
SPR44873.1|103857_104133_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44874.1|104140_104803_+	octanoyltransferase	NA	NA	NA	NA	NA
SPR44875.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
SPR44876.1|105880_106429_-	dTDP-4-dehydrorhamnose 35-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
SPR44877.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
SPR44878.1|107379_108441_-	dTDP-glucose 46-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
SPR44879.1|108476_109427_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44880.1|109525_110065_-	LysE family translocator	NA	NA	NA	NA	NA
SPR44881.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
SPR44882.1|111601_112231_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
SPR44883.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
SPR44884.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR44885.1|114955_115303_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44886.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44887.1|116080_117010_+	IS110 family	NA	NA	NA	NA	NA
SPR44888.1|117085_117886_-	inner membrane component of binding-protein-dependent transport system	NA	NA	NA	NA	NA
SPR44889.1|117882_118758_-	inner membrane component of binding-protein-dependent transport system	NA	NA	NA	NA	NA
SPR44890.1|118768_120061_-	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR44891.1|120103_121144_-	sugar ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
SPR44892.1|121249_122071_-	3'5'-cyclic adenosine monophosphate phosphodiesterase CpdA	NA	NA	NA	NA	NA
SPR44893.1|122171_123122_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44894.1|123220_124171_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 3
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	166990	221607	4160081	tRNA,protease,transposase	Planktothrix_phage(14.29%)	50	NA	NA
SPR44931.1|166990_167941_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44932.1|168127_169378_+	partial	NA	G9BWD6	Planktothrix_phage	33.7	5.1e-20
SPR44933.1|169384_170287_-	membrane protein	NA	NA	NA	NA	NA
SPR44934.1|170264_170894_-	LemA family protein	NA	NA	NA	NA	NA
SPR44935.1|171176_172607_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
SPR44936.1|172640_173270_+	LysE family efflux protein	NA	NA	NA	NA	NA
SPR44937.1|173318_174926_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
SPR44938.1|174962_175634_+	exported protein	NA	NA	NA	NA	NA
SPR44939.1|175715_176192_-	bacterioferritin	NA	NA	NA	NA	NA
SPR44940.1|176398_177349_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44941.1|177345_177819_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR44942.1|178464_178992_+	lipoprotein	NA	NA	NA	NA	NA
SPR44943.1|179083_179899_+	lipoprotein	NA	NA	NA	NA	NA
SPR44944.1|179959_180694_+	sulfurtransferase	NA	NA	NA	NA	NA
SPR44945.1|180731_182810_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
SPR44946.1|183059_183332_-	exported protein	NA	NA	NA	NA	NA
SPR44947.1|183433_184519_+	iron sulfur binding protein	NA	NA	NA	NA	NA
SPR44948.1|184522_186427_+	exported protein	NA	NA	NA	NA	NA
SPR44949.1|186423_190110_+	exported protein	NA	NA	NA	NA	NA
SPR44950.1|190170_190734_+	deoxycytidine triphosphate deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
SPR44951.1|190741_191164_-	conseved hypothetical protein	NA	NA	NA	NA	NA
SPR44952.1|191191_191611_-	lyase	NA	NA	NA	NA	NA
SPR44953.1|191639_191987_-	partial	NA	NA	NA	NA	NA
SPR44954.1|192260_192710_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44955.1|192864_195135_+	Orn/Arg/Lys decarboxylase	NA	NA	NA	NA	NA
SPR44956.1|195210_196416_+	exported protein	NA	NA	NA	NA	NA
SPR44957.1|196514_197465_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44958.1|197567_198203_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
SPR44959.1|198199_199093_+	metal transporter	NA	NA	NA	NA	NA
SPR44960.1|199487_200588_+	glycine cleavage system aminomethyltransferase	NA	NA	NA	NA	NA
SPR44961.1|200669_201044_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
SPR44962.1|201103_203968_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
SPR44963.1|204112_204853_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR44964.1|204922_206134_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44965.1|206165_207131_+	exported protein	NA	NA	NA	NA	NA
SPR44966.1|207148_207646_+	partial	NA	NA	NA	NA	NA
SPR44967.1|207744_208695_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44968.1|208781_209732_+|transposase	transposase for IS1002	transposase	NA	NA	NA	NA
SPR44969.1|209888_210212_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
SPR44970.1|210316_211357_-	hypothetical protein	NA	NA	NA	NA	NA
SPR44971.1|211362_212142_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
SPR44972.1|212187_212484_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR44973.1|212509_212785_-	methylmuconolactone isomerase	NA	NA	NA	NA	NA
SPR44974.1|212841_213486_-	3-oxoadipate CoA-transferase subunit B	NA	NA	NA	NA	NA
SPR44975.1|213485_214172_-	3-oxoadipate CoA-transferase subunit A	NA	NA	NA	NA	NA
SPR44976.1|214370_215153_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR44977.1|215203_215929_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
SPR44978.1|215960_217310_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
SPR44979.1|217421_218354_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR44980.1|218811_221607_-|protease	autotransporter subtilisin-like protease	protease	NA	NA	NA	NA
>prophage 4
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	227599	282792	4160081	tRNA,protease,transposase	Bacillus_phage(25.0%)	50	NA	NA
SPR44985.1|227599_228550_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44986.1|228768_229464_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
SPR44987.1|229480_230893_+	oxidoreductase	NA	NA	NA	NA	NA
SPR44988.1|231005_232436_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
SPR44989.1|232477_234391_-	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
SPR44990.1|234709_235276_+	exported protein	NA	NA	NA	NA	NA
SPR44991.1|235417_236368_+	restriction endonuclease	NA	NA	NA	NA	NA
SPR44992.1|236482_237433_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44993.1|237519_238470_+|transposase	transposase for IS1002	transposase	NA	NA	NA	NA
SPR44994.1|238466_239417_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44995.1|239515_240313_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
SPR44996.1|240418_241135_-	MBL fold hydrolase	NA	NA	NA	NA	NA
SPR44997.1|241262_241673_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
SPR44998.1|241922_242678_+	partial	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
SPR44999.1|242694_243408_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR45000.1|243481_244525_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR45001.1|244695_246798_+	membrane protein	NA	NA	NA	NA	NA
SPR45002.1|247351_248182_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45003.1|248208_249165_+	putative exported protein	NA	NA	NA	NA	NA
SPR45004.1|249183_249675_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA	NA
SPR45005.1|249671_251027_-	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
SPR45006.1|251027_251726_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45007.1|251722_252424_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45008.1|252676_253726_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
SPR45009.1|253831_254773_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
SPR45010.1|254769_256659_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
SPR45011.1|256745_257384_+	putative membrane protein	NA	NA	NA	NA	NA
SPR45012.1|257526_258771_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
SPR45013.1|258842_259379_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45014.1|259530_260922_+	fumarate hydratase	NA	NA	NA	NA	NA
SPR45015.1|260938_261850_-	membrane protein	NA	NA	NA	NA	NA
SPR45016.1|262054_263038_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
SPR45017.1|263102_264002_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR45018.1|264108_265863_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR45019.1|265870_266995_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45020.1|267008_267989_-	exported protein	NA	NA	NA	NA	NA
SPR45021.1|268719_269670_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45022.1|270145_270775_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45023.1|270900_272478_+	cytochrome D ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
SPR45024.1|272493_273648_+	cytochrome D ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
SPR45025.1|273661_273787_+	putative exported protein	NA	NA	NA	NA	NA
SPR45026.1|273783_275535_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
SPR45027.1|275531_277211_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
SPR45028.1|277273_277822_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
SPR45029.1|277932_278721_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR45030.1|278964_279243_+	exported protein	NA	NA	NA	NA	NA
SPR45031.1|279452_280307_+	outer membrane porin	NA	NA	NA	NA	NA
SPR45032.1|280286_281237_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45033.1|281514_281676_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45034.1|282342_282792_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
>prophage 5
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	287953	337359	4160081	tRNA,protease,transposase	Streptococcus_phage(40.0%)	49	NA	NA
SPR45041.1|287953_289123_+|protease	protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
SPR45042.1|289119_290070_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45043.1|290168_291122_-	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
SPR45044.1|291426_292236_+	putative IclR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR45045.1|292336_293689_+	partial	NA	NA	NA	NA	NA
SPR45046.1|293966_294611_+	Hypothetical protein	NA	NA	NA	NA	NA
SPR45047.1|294607_295828_+	putative dehydratase/racemase	NA	NA	NA	NA	NA
SPR45048.1|295850_296846_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR45049.1|296918_298124_-	CoA transferase	NA	NA	NA	NA	NA
SPR45050.1|298120_298369_-	glutaredoxin family protein	NA	NA	NA	NA	NA
SPR45051.1|298365_299250_-	reductase	NA	NA	NA	NA	NA
SPR45052.1|299419_300370_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45053.1|300366_300939_-	methylated-DNA--protein-cysteine methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
SPR45054.1|300935_301874_-	tetrapyrrole methylase	NA	NA	NA	NA	NA
SPR45055.1|302175_302475_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45056.1|302474_303077_+	probable phosphosugar isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.7e-17
SPR45057.1|303076_303817_+	phospholipid-binding protein	NA	NA	NA	NA	NA
SPR45058.1|303813_304305_+	putative thioredoxin	NA	NA	NA	NA	NA
SPR45059.1|304445_305234_-	exported protein	NA	NA	NA	NA	NA
SPR45060.1|305495_306398_+	acetylglutamate kinase	NA	NA	NA	NA	NA
SPR45061.1|306397_307144_+	hydrolase	NA	NA	NA	NA	NA
SPR45062.1|307193_307769_+	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
SPR45063.1|307981_309475_+	sodium:sulfate symporter	NA	NA	NA	NA	NA
SPR45064.1|309485_310541_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
SPR45065.1|310566_311703_-	rod shape-determining protein	NA	NA	NA	NA	NA
SPR45066.1|311699_313652_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
SPR45067.1|313665_314229_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
SPR45068.1|314215_315100_-	cell shape-determining protein MreC	NA	NA	NA	NA	NA
SPR45069.1|315188_316232_-	rod shape-determining protein	NA	NA	NA	NA	NA
SPR45070.1|316462_316771_+|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit C	tRNA	NA	NA	NA	NA
SPR45071.1|316773_318312_+|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit A	tRNA	NA	NA	NA	NA
SPR45072.1|318314_319769_+|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
SPR45073.1|319882_320557_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SPR45074.1|320694_321483_+	endonuclease	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
SPR45075.1|321905_323249_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
SPR45076.1|323285_323924_-	membrane protein	NA	NA	NA	NA	NA
SPR45077.1|324111_324891_+	partial	NA	NA	NA	NA	NA
SPR45078.1|324972_325923_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45079.1|326021_326972_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45080.1|326968_327892_-	exported protein	NA	NA	NA	NA	NA
SPR45081.1|328149_328890_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
SPR45082.1|329104_330115_-	CDP-6-deoxy-delta-34-glucoseen reductase	NA	NA	NA	NA	NA
SPR45083.1|330133_330613_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45084.1|330637_332098_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
SPR45085.1|332142_332874_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45086.1|332993_334502_-	membrane protein	NA	NA	NA	NA	NA
SPR45087.1|334732_335476_+	putative membrane protein	NA	NA	NA	NA	NA
SPR45088.1|335574_336297_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR45089.1|336408_337359_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 6
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	360942	418582	4160081	transposase	Paramecium_bursaria_Chlorella_virus(16.67%)	55	NA	NA
SPR45117.1|360942_361893_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45118.1|362015_362744_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
SPR45119.1|362840_364019_+	membrane protein	NA	NA	NA	NA	NA
SPR45120.1|364015_364849_+	bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
SPR45121.1|364885_365626_-	acyltransferase	NA	NA	NA	NA	NA
SPR45122.1|365745_366921_-	dihydroorotase	NA	NA	NA	NA	NA
SPR45123.1|366917_367871_-	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
SPR45124.1|367884_368286_-	Holliday junction resolvase	NA	NA	NA	NA	NA
SPR45125.1|368278_368884_-	DUF179 domain-containing protein	NA	NA	NA	NA	NA
SPR45126.1|369252_370101_+	phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
SPR45127.1|370097_370751_+	thiamine-phosphate pyrophosphorylase	NA	NA	NA	NA	NA
SPR45128.1|370767_372051_+	glutamate-1-semialdehyde 21-aminomutase	NA	NA	NA	NA	NA
SPR45129.1|372290_373916_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45130.1|374009_374411_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45131.1|374435_374870_-	probable 4-hydroxybenzoyl CoA thioesterase	NA	NA	NA	NA	NA
SPR45132.1|374871_376521_-	acid-coenzyme A ligase	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
SPR45133.1|376561_377731_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR45134.1|377733_378597_-	hydratase/isomerase	NA	NA	NA	NA	NA
SPR45135.1|378618_379074_-	partial	NA	NA	NA	NA	NA
SPR45136.1|379408_381220_-	partial	NA	NA	NA	NA	NA
SPR45137.1|381960_382665_-	high-affinity branched-chain amino acid transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
SPR45138.1|382658_383453_-	putative branched-chain amino acid transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
SPR45139.1|383449_384415_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR45140.1|384418_385339_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR45141.1|385435_386599_-	putative ABC transporter substrate binding protein	NA	NA	NA	NA	NA
SPR45142.1|386821_387712_+	esterase	NA	NA	NA	NA	NA
SPR45143.1|387715_388219_+	MarR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR45144.1|388261_389260_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45145.1|389256_390207_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45146.1|390774_391725_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45147.1|391784_392345_+	5'(3')-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
SPR45148.1|392474_393371_+	flagellar protein FlgA	NA	NA	NA	NA	NA
SPR45149.1|393367_393814_+	flagellar protein FlgA	NA	NA	NA	NA	NA
SPR45150.1|393847_394729_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR45151.1|394842_396045_+	transporter	NA	NA	NA	NA	NA
SPR45152.1|396173_398033_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
SPR45153.1|398110_398920_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR45154.1|398990_399992_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
SPR45155.1|400023_400884_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SPR45156.1|401083_402088_+	acetyl esterase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
SPR45157.1|402084_403671_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
SPR45158.1|403679_404606_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
SPR45159.1|404628_405255_+	putative regulatory protein	NA	NA	NA	NA	NA
SPR45160.1|405353_406304_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45161.1|406402_407386_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45162.1|407312_408014_-	putative exported protein	NA	NA	NA	NA	NA
SPR45163.1|408062_408833_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
SPR45164.1|408829_410008_-	CoA transferase	NA	NA	NA	NA	NA
SPR45165.1|410175_411882_-	thiamine pyrophosphate enzyme	NA	NA	NA	NA	NA
SPR45166.1|411878_412775_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR45167.1|412815_414417_-	sulfurtransferase	NA	NA	NA	NA	NA
SPR45168.1|414454_415441_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45169.1|415515_416115_-	Hypothetical protein	NA	NA	NA	NA	NA
SPR45170.1|416575_417556_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR45171.1|417631_418582_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 7
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	643082	766592	4160081	tRNA,transposase,tail,terminase	uncultured_Caudovirales_phage(13.79%)	123	NA	NA
SPR45380.1|643082_644033_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45381.1|644131_644932_-	inner membrane protein	NA	NA	NA	NA	NA
SPR45382.1|644993_645377_+	thioredoxin	NA	NA	NA	NA	NA
SPR45383.1|645388_646822_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
SPR45384.1|647028_647358_-	putative conserved inner membrane protein	NA	NA	NA	NA	NA
SPR45385.1|647360_648110_-	inner membrane protein	NA	NA	NA	NA	NA
SPR45386.1|648292_649213_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SPR45387.1|649259_649472_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
SPR45388.1|649494_649917_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45389.1|649933_651034_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45390.1|651130_652648_-	exported protein	NA	NA	NA	NA	NA
SPR45391.1|652723_653563_+	putative UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
SPR45392.1|653584_654457_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
SPR45393.1|654547_655642_-	outer membrane porin protein OmpQ	NA	NA	NA	NA	NA
SPR45394.1|655935_656886_-	IS481 family	NA	NA	NA	NA	NA
SPR45395.1|657014_657902_+	IS481 family	NA	NA	NA	NA	NA
SPR45396.1|657985_658345_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45397.1|658726_659764_-	inner membrane protein	NA	NA	NA	NA	NA
SPR45398.1|660080_661421_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
SPR45399.1|661430_661883_-	inner membrane protein	NA	NA	NA	NA	NA
SPR45400.1|661979_663161_+	monooxygenase	NA	NA	NA	NA	NA
SPR45401.1|663226_664252_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45402.1|664292_664532_+	DNA-binding protein	NA	NA	NA	NA	NA
SPR45403.1|664601_666191_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
SPR45404.1|666190_666739_+	Ccrossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
SPR45405.1|666819_667392_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
SPR45406.1|667410_668322_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45407.1|668395_669364_-	serine/threonine dehydratase	NA	NA	NA	NA	NA
SPR45408.1|669486_670560_+	Holliday junction DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
SPR45409.1|670564_672385_-	ATP-dependent DNA helicase	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
SPR45410.1|672461_673412_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45411.1|673969_674620_+	carbonic anhydrase	NA	NA	NA	NA	NA
SPR45412.1|674641_676060_-	amidase	NA	NA	NA	NA	NA
SPR45413.1|676129_676870_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR45414.1|676883_677612_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR45415.1|677622_678504_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR45416.1|678520_679228_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
SPR45417.1|679230_679989_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
SPR45418.1|680198_681941_+	sulfite reductase	NA	NA	NA	NA	NA
SPR45419.1|681933_682458_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45420.1|682497_683292_-	exported protein	NA	NA	NA	NA	NA
SPR45421.1|683459_684533_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45422.1|684631_685582_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45423.1|685833_686040_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45424.1|686111_687206_-	phage repressor protein	NA	NA	NA	NA	NA
SPR45425.1|687515_688214_-	phage-related membrane protein	NA	NA	NA	NA	NA
SPR45426.1|688467_689418_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45427.1|690093_690543_+	hypothetical protein	NA	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
SPR45428.1|690529_691807_+|terminase	phage terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
SPR45429.1|691809_693228_+	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
SPR45430.1|693199_694312_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
SPR45431.1|694317_694560_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
SPR45432.1|694682_695285_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
SPR45433.1|695713_695830_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45434.1|695854_696664_-	partial	NA	NA	NA	NA	NA
SPR45435.1|696762_697713_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45436.1|697814_698378_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	70.4	2.0e-64
SPR45437.1|698387_698639_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45438.1|698701_699184_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
SPR45439.1|699185_699386_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45440.1|699385_699781_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
SPR45441.1|699777_700176_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
SPR45442.1|700172_700595_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45443.1|700638_700785_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45444.1|701534_701876_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	35.2	1.2e-08
SPR45445.1|701885_702215_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
SPR45446.1|702244_702523_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.5e-14
SPR45447.1|702548_705161_+|tail	phage tail protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
SPR45448.1|705597_706131_+	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
SPR45449.1|706127_706517_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
SPR45450.1|706509_710466_+	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
SPR45451.1|710509_710887_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45452.1|710951_711065_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45453.1|711368_712181_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45454.1|712406_712958_+	phage lysozyme	NA	NA	NA	NA	NA
SPR45455.1|713469_713751_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45456.1|714300_714972_-	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
SPR45457.1|715327_716014_-	two component system response regulator	NA	NA	NA	NA	NA
SPR45458.1|715994_716567_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
SPR45459.1|716632_718363_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
SPR45460.1|718415_718844_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45461.1|718846_719527_+	protein TolQ	NA	NA	NA	NA	NA
SPR45462.1|719526_719985_+	protein TolR	NA	NA	NA	NA	NA
SPR45463.1|720021_720996_+	proline-rich inner membrane protein	NA	NA	NA	NA	NA
SPR45464.1|721012_722329_+	translocation protein TolB	NA	NA	NA	NA	NA
SPR45465.1|722360_722858_+	putative peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
SPR45466.1|722944_723634_+	putative periplasmic protein	NA	NA	NA	NA	NA
SPR45467.1|723633_724683_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR45468.1|724679_725474_+	putative ABC transport ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
SPR45469.1|727655_728606_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45470.1|728585_730601_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR45471.1|730743_731973_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45472.1|731975_733418_-	pyruvate kinase	NA	NA	NA	NA	NA
SPR45473.1|733522_734668_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
SPR45474.1|734699_735497_-	rRNA small subunit methyltransferase A	NA	NA	NA	NA	NA
SPR45475.1|735521_737081_-	chaperone SurA	NA	NA	NA	NA	NA
SPR45476.1|737077_739444_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
SPR45477.1|739559_740663_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45478.1|740662_741355_+	nucleotidyl transferase	NA	NA	NA	NA	NA
SPR45479.1|741570_742200_+	putative inner membrane protein	NA	NA	NA	NA	NA
SPR45480.1|742184_742526_-	putative pterin-4-alpha-carbinolamine dehydratase	NA	NA	NA	NA	NA
SPR45481.1|742585_743188_-	outer membrane protein	NA	NA	NA	NA	NA
SPR45482.1|743293_744244_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45483.1|744403_745276_-	carboxyvinyl-carboxyphosphonate phosphorylmutase	NA	NA	NA	NA	NA
SPR45484.1|745616_745835_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45485.1|745874_747254_-	aminotransferase	NA	NA	NA	NA	NA
SPR45486.1|747295_748693_-	amidase	NA	NA	NA	NA	NA
SPR45487.1|748732_750385_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
SPR45488.1|750388_751273_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR45489.1|751272_752214_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR45490.1|752292_753912_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR45491.1|754078_754894_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR45492.1|754961_755531_-	probable transcriptional regulator	NA	NA	NA	NA	NA
SPR45493.1|755531_756482_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45494.1|756801_756996_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45495.1|757136_758234_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
SPR45496.1|758267_759533_+	exported protein	NA	NA	NA	NA	NA
SPR45497.1|759690_760641_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45498.1|760884_761475_+	exported protein	NA	NA	NA	NA	NA
SPR45499.1|761490_763896_-	ferric siderophore receptor	NA	NA	NA	NA	NA
SPR45500.1|764054_765026_-	membrane protein	NA	NA	NA	NA	NA
SPR45501.1|765157_765682_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
SPR45502.1|765641_766592_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 8
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	861440	985626	4160081	holin,transposase	Bacillus_phage(20.0%)	107	NA	NA
SPR45578.1|861440_862391_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45579.1|862408_862963_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SPR45580.1|862964_863399_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45581.1|863395_863830_+	exported protein	NA	NA	NA	NA	NA
SPR45582.1|863813_864617_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
SPR45583.1|864633_865449_-	DNA repair exonuclease	NA	NA	NA	NA	NA
SPR45584.1|865445_866261_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SPR45585.1|866407_867109_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR45586.1|867136_869095_-|holin	high-affinity choline transport protein	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
SPR45587.1|869177_870128_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45588.1|870348_871017_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR45589.1|871140_872247_+	HlyD family secretion protein	NA	NA	NA	NA	NA
SPR45590.1|872259_875373_+	multidrug efflux system membrane protein	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
SPR45591.1|875369_876863_+	multidrug efflux system outer membrane protein	NA	NA	NA	NA	NA
SPR45592.1|876877_877549_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR45593.1|877592_878045_-	azurin	NA	NA	NA	NA	NA
SPR45594.1|878227_878875_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR45595.1|878978_881027_+	hydantoin utilization protein A	NA	NA	NA	NA	NA
SPR45596.1|881023_883036_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
SPR45597.1|883061_884396_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45598.1|884504_885497_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR45599.1|885563_887648_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45600.1|887672_888644_-	exported protein	NA	NA	NA	NA	NA
SPR45601.1|888772_889804_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45602.1|889807_890959_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
SPR45603.1|891177_892053_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR45604.1|892130_892955_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR45605.1|893151_894081_-	IS110 family	NA	NA	NA	NA	NA
SPR45606.1|894364_895348_-	putative exported protein	NA	NA	NA	NA	NA
SPR45607.1|895406_896534_-	argininosuccinate lyase	NA	NA	NA	NA	NA
SPR45608.1|896946_898335_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45609.1|898365_899355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR45610.1|899465_900698_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
SPR45611.1|900979_901780_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
SPR45612.1|901802_904034_-|holin	high-affinity choline transport protein	holin	NA	NA	NA	NA
SPR45613.1|904821_905268_-	protein translocase subunit SecG	NA	NA	NA	NA	NA
SPR45614.1|905289_906036_-	triosephosphate isomerase	NA	NA	NA	NA	NA
SPR45615.1|906179_907157_-	NAD(P)H quinone oxidoreductase	NA	NA	NA	NA	NA
SPR45616.1|907790_908402_+	hypothetical protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
SPR45617.1|908395_909613_-	threonine dehydratase catabolic	NA	NA	NA	NA	NA
SPR45618.1|909753_910704_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45619.1|910700_911420_-	putative lipoprotein	NA	NA	NA	NA	NA
SPR45620.1|911540_913700_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
SPR45621.1|913790_914060_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
SPR45622.1|914353_914881_+	lipoprotein	NA	NA	NA	NA	NA
SPR45623.1|914899_915679_-	putative CDP-diacylglycerol--serine O-phosphatidyltransferase protein	NA	NA	NA	NA	NA
SPR45624.1|915846_916863_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
SPR45625.1|916935_917427_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
SPR45626.1|917437_919153_-	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
SPR45627.1|920316_921267_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45628.1|921365_922316_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45629.1|922312_924145_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
SPR45630.1|924543_925203_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
SPR45631.1|925296_925443_+	vir-repressed protein	NA	NA	NA	NA	NA
SPR45632.1|925551_925719_+	putative exported protein	NA	NA	NA	NA	NA
SPR45633.1|925730_926411_-	lipoprotein	NA	NA	NA	NA	NA
SPR45634.1|926692_927409_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45635.1|927423_928725_-	phospholipase	NA	NA	NA	NA	NA
SPR45636.1|928859_929678_-	partial	NA	NA	NA	NA	NA
SPR45637.1|930893_933272_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
SPR45638.1|933989_935342_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
SPR45639.1|935370_935892_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA	NA
SPR45640.1|935888_937343_+	carboxylase	NA	NA	NA	NA	NA
SPR45641.1|937377_937626_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45642.1|937731_938607_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45643.1|938632_939688_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45644.1|939700_940492_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR45645.1|940524_941895_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
SPR45646.1|941910_942990_+	partial	NA	NA	NA	NA	NA
SPR45647.1|943071_944121_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45648.1|944117_945068_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45649.1|945064_945448_-	putative ferredoxin	NA	NA	NA	NA	NA
SPR45650.1|945502_947317_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
SPR45651.1|947466_948294_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
SPR45652.1|948339_949320_+	oxidoreductase	NA	NA	NA	NA	NA
SPR45653.1|949316_949529_-	putative membrane protein	NA	NA	NA	NA	NA
SPR45654.1|949525_950707_-	membrane protein	NA	NA	NA	NA	NA
SPR45655.1|950870_951605_+	serine/threonine protein phosphatase 1	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.6	3.8e-63
SPR45656.1|951606_954219_-	penicillin-binding protein 1A	NA	NA	NA	NA	NA
SPR45657.1|954354_956268_-	putative peptidase	NA	NA	NA	NA	NA
SPR45658.1|956883_957294_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45659.1|957391_958477_+	DNA-damage-inducible protein p	NA	NA	NA	NA	NA
SPR45660.1|958575_959526_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45661.1|959624_960575_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45662.1|960554_960650_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45663.1|960662_961214_-	decarboxylase	NA	NA	NA	NA	NA
SPR45664.1|962491_963466_+	exported protein	NA	NA	NA	NA	NA
SPR45665.1|963485_964358_+	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA	NA
SPR45666.1|964354_965182_+	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA	NA
SPR45667.1|965205_965610_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.0	5.7e-13
SPR45668.1|966093_967506_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45669.1|967610_969065_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SPR45670.1|969114_970518_-	tricarballylate dehydrogenase	NA	NA	NA	NA	NA
SPR45671.1|970538_971723_-	citrate utilization protein B	NA	NA	NA	NA	NA
SPR45672.1|971765_972998_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45673.1|973111_973927_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45674.1|973968_974865_+	putative transcriptional regulator	NA	NA	NA	NA	NA
SPR45675.1|974919_975780_-	fumarylacetoacetate family hydrolase	NA	NA	NA	NA	NA
SPR45676.1|975857_976931_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45677.1|977056_978031_-	exported protein	NA	NA	NA	NA	NA
SPR45678.1|978169_979159_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR45679.1|979183_979759_-	membrane protein	NA	NA	NA	NA	NA
SPR45680.1|979852_981511_-	CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.9	2.3e-20
SPR45681.1|981522_982506_-	exported protein	NA	NA	NA	NA	NA
SPR45682.1|982510_982933_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45683.1|984179_984539_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45684.1|984675_985626_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 9
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	1077071	1214866	4160081	tRNA,protease,transposase	uncultured_Mediterranean_phage(16.67%)	114	NA	NA
SPR45765.1|1077071_1078022_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45766.1|1078120_1079071_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45767.1|1079369_1080107_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
SPR45768.1|1080542_1080866_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
SPR45769.1|1080900_1081461_+	flagellar transcriptional activator FlhC	NA	NA	NA	NA	NA
SPR45770.1|1081581_1082457_+	chemotaxis protein MotA	NA	NA	NA	NA	NA
SPR45771.1|1082469_1083417_+	chemotaxis protein MotB	NA	NA	NA	NA	NA
SPR45772.1|1083518_1083812_+	chemotaxis protein CheY	NA	NA	NA	NA	NA
SPR45773.1|1083838_1085896_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
SPR45774.1|1085910_1086411_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
SPR45775.1|1086484_1088191_+	methyl-accepting chemotaxis protein I	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
SPR45776.1|1088199_1088763_+	chemotaxis protein methyltransferase	NA	NA	NA	NA	NA
SPR45777.1|1089054_1090107_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
SPR45778.1|1090159_1090549_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
SPR45779.1|1090557_1091190_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
SPR45780.1|1091289_1092219_-	IS110 family	NA	NA	NA	NA	NA
SPR45781.1|1093094_1094144_+	aldo/keto reductase	NA	NA	NA	NA	NA
SPR45782.1|1094140_1095784_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
SPR45783.1|1095780_1096668_-	magnesium and cobalt efflux protein	NA	NA	NA	NA	NA
SPR45784.1|1096808_1097282_-	endoribonuclease YbeY	NA	NA	NA	NA	NA
SPR45785.1|1097271_1098294_-	PhoH-like protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
SPR45786.1|1098290_1099718_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
SPR45787.1|1099874_1100288_+	partial	NA	NA	NA	NA	NA
SPR45788.1|1100655_1101585_-	IS110 family	NA	NA	NA	NA	NA
SPR45789.1|1102004_1102940_-	protein-export membrane protein	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
SPR45790.1|1102989_1104870_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
SPR45791.1|1104936_1105281_-	putative secreted protein	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
SPR45792.1|1105425_1106562_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
SPR45793.1|1106558_1107602_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SPR45794.1|1107789_1109226_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
SPR45795.1|1109316_1109958_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
SPR45796.1|1110380_1111310_+	IS110 family	NA	NA	NA	NA	NA
SPR45797.1|1111642_1114375_+	pertactin autotransporter	NA	NA	NA	NA	NA
SPR45798.1|1114441_1115923_-	siroheme synthase	NA	NA	NA	NA	NA
SPR45799.1|1116126_1116843_+	membrane protein	NA	NA	NA	NA	NA
SPR45800.1|1116927_1117245_+	putative membrane protein	NA	NA	NA	NA	NA
SPR45801.1|1117285_1117699_+	putative membrane protein	NA	NA	NA	NA	NA
SPR45802.1|1117700_1118060_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45803.1|1118102_1119647_-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
SPR45804.1|1119730_1120561_+	transglycosylase	NA	NA	NA	NA	NA
SPR45805.1|1120595_1121750_-	aminotransferase	NA	NA	NA	NA	NA
SPR45806.1|1122781_1125070_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
SPR45807.1|1126276_1126741_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45808.1|1126767_1127718_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45809.1|1127816_1128767_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45810.1|1129134_1129911_-	phosphate transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
SPR45811.1|1129955_1130813_-	phosphate transport system permease protein	NA	NA	NA	NA	NA
SPR45812.1|1130834_1131851_-	phosphate ABC transporter permease PstC	NA	NA	NA	NA	NA
SPR45813.1|1131985_1133026_-	phosphate-binding periplasmic protein precursor	NA	M4QHS4	Cyanophage	40.2	2.1e-51
SPR45814.1|1133220_1135302_-	polyphosphate kinase	NA	NA	NA	NA	NA
SPR45815.1|1135537_1137031_+	exopolyphosphatase	NA	NA	NA	NA	NA
SPR45816.1|1137149_1137260_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45817.1|1137261_1138056_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR45818.1|1138276_1139635_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
SPR45819.1|1139631_1140474_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
SPR45820.1|1140492_1142379_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
SPR45821.1|1142616_1143249_-	rRNA large subunit methyltransferase E	NA	NA	NA	NA	NA
SPR45822.1|1143267_1143870_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45823.1|1144021_1144972_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45824.1|1145142_1145553_+	partial	NA	NA	NA	NA	NA
SPR45825.1|1145774_1146575_-	membrane protein	NA	NA	NA	NA	NA
SPR45826.1|1146618_1147605_-	homoserine kinase	NA	NA	NA	NA	NA
SPR45827.1|1147780_1148758_+|tRNA	tRNA-dihydrouridine synthase A	tRNA	NA	NA	NA	NA
SPR45828.1|1148754_1149705_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45829.1|1149691_1150750_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45830.1|1150862_1151321_-	CBS domain-containing protein	NA	NA	NA	NA	NA
SPR45831.1|1151357_1152671_-	membrane protein	NA	NA	NA	NA	NA
SPR45832.1|1152688_1153060_+	membrane protein	NA	NA	NA	NA	NA
SPR45833.1|1153056_1154520_+	hypothetical protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
SPR45834.1|1154660_1155389_+	two component system response regulator	NA	NA	NA	NA	NA
SPR45835.1|1155370_1158220_-	two component system sensor histidine kinase	NA	NA	NA	NA	NA
SPR45836.1|1158432_1159383_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45837.1|1159550_1160375_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
SPR45838.1|1160374_1161253_+	high-affinity branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR45839.1|1161504_1161666_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45840.1|1161942_1162101_-	hypothetical protein	NA	NA	NA	NA	NA
SPR45841.1|1162157_1163273_+	amino acids binding protein	NA	NA	NA	NA	NA
SPR45842.1|1163280_1164096_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
SPR45843.1|1164092_1165958_+	long-chain fatty-acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
SPR45844.1|1166036_1166669_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
SPR45845.1|1166665_1166968_-	membrane protein	NA	NA	NA	NA	NA
SPR45846.1|1167010_1168531_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
SPR45847.1|1168537_1169293_-	probable short chain dehydrogenase	NA	NA	NA	NA	NA
SPR45848.1|1169322_1170204_-	peptide chain release factor 2	NA	NA	NA	NA	NA
SPR45849.1|1170529_1172266_-	single-stranded-DNA-specific exonuclease	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
SPR45850.1|1172211_1173153_-	exported protein	NA	NA	NA	NA	NA
SPR45851.1|1173198_1174479_+	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
SPR45852.1|1174471_1175167_+	lipoprotein releasing system ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
SPR45853.1|1175200_1176028_+	putative deoxyribonuclease	NA	NA	NA	NA	NA
SPR45854.1|1176309_1179540_+|protease	serine protease	protease	NA	NA	NA	NA
SPR45855.1|1180275_1184202_+	outer membrane ligand binding protein	NA	NA	NA	NA	NA
SPR45856.1|1184395_1186009_+	partial	NA	NA	NA	NA	NA
SPR45857.1|1186101_1187898_+|transposase	IS481 transposase phused to partial competence protein	transposase	NA	NA	NA	NA
SPR45858.1|1187939_1188866_+	hydrolase	NA	NA	NA	NA	NA
SPR45859.1|1188935_1189781_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45860.1|1189848_1190403_+	transcription elongation factor	NA	NA	NA	NA	NA
SPR45861.1|1190449_1191400_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45862.1|1191498_1192122_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
SPR45863.1|1192299_1194582_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
SPR45864.1|1194736_1197433_-	pyruvate dehydrogenase subunit E1	NA	NA	NA	NA	NA
SPR45865.1|1197558_1198047_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
SPR45866.1|1198082_1199945_+	membrane protein	NA	NA	NA	NA	NA
SPR45867.1|1199923_1200133_+	oligopeptide transporter OPT family	NA	NA	NA	NA	NA
SPR45868.1|1200457_1203328_+	2-oxoglutarate dehydrogenase subunit E1	NA	NA	NA	NA	NA
SPR45869.1|1203373_1204588_+	2-oxoglutarate dehydrogenase complex subunit dihydrolipoamide succinyltransferase	NA	NA	NA	NA	NA
SPR45870.1|1204817_1206245_+	2-oxoglutarate dehydrogenase complex subunit dihydrolipoamide dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
SPR45871.1|1206342_1207434_+	hypothetical protein	NA	NA	NA	NA	NA
SPR45872.1|1207446_1208205_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR45873.1|1208292_1209195_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR45874.1|1209191_1210142_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR45875.1|1210271_1211255_-	exported protein	NA	NA	NA	NA	NA
SPR45876.1|1211309_1212032_-	probable short-chain dehydrogenase	NA	NA	NA	NA	NA
SPR45877.1|1212499_1213366_+	partial	NA	NA	NA	NA	NA
SPR45878.1|1213510_1214866_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
>prophage 10
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	1350512	1418999	4160081	transposase	Planktothrix_phage(33.33%)	59	NA	NA
SPR46003.1|1350512_1351463_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46004.1|1351564_1352221_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
SPR46005.1|1352231_1352870_-	glutathione S-transferase	NA	NA	NA	NA	NA
SPR46006.1|1353233_1353842_-	partial	NA	NA	NA	NA	NA
SPR46007.1|1353849_1354206_+	partial	NA	NA	NA	NA	NA
SPR46008.1|1354287_1354989_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
SPR46009.1|1354989_1355757_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
SPR46010.1|1355753_1356992_-	leucine/isoleucine/valine ABC transporter permease	NA	NA	NA	NA	NA
SPR46011.1|1356991_1357918_-	high-affinity branched-chain amino acid transport system permease protein	NA	NA	NA	NA	NA
SPR46012.1|1358020_1359136_-	leucine/isoleucine/valine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR46013.1|1359151_1360102_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46014.1|1360455_1361037_-	membrane protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
SPR46015.1|1361033_1361867_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
SPR46016.1|1362077_1363391_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
SPR46017.1|1363567_1364449_+	sn-glycerol-3-phosphate transport system permease protein	NA	NA	NA	NA	NA
SPR46018.1|1364468_1365320_+	sn-glycerol-3-phosphate transport system permease protein	NA	NA	NA	NA	NA
SPR46019.1|1365372_1366461_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
SPR46020.1|1366571_1367699_-	leu/Ile/val-binding protein	NA	NA	NA	NA	NA
SPR46021.1|1367819_1368545_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR46022.1|1368643_1369594_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46023.1|1369815_1370193_-	putative membrane protein	NA	NA	NA	NA	NA
SPR46024.1|1370340_1370838_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR46025.1|1370834_1371362_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46026.1|1371495_1372311_+	putative exported protein	NA	NA	NA	NA	NA
SPR46027.1|1372323_1373505_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
SPR46028.1|1373552_1374446_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
SPR46029.1|1374572_1375043_-	hypothetical protein	NA	NA	NA	NA	NA
SPR46030.1|1375168_1375996_-	lipoprotein	NA	NA	NA	NA	NA
SPR46031.1|1376024_1376801_-	putative lipoate-protein ligase A	NA	NA	NA	NA	NA
SPR46032.1|1376797_1377073_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR46033.1|1377087_1377552_-	acetyltransferase	NA	NA	NA	NA	NA
SPR46034.1|1377563_1378265_-	glutathione transferase	NA	NA	NA	NA	NA
SPR46035.1|1378374_1378875_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
SPR46036.1|1378957_1381588_-	hypothetical protein	NA	NA	NA	NA	NA
SPR46037.1|1381763_1382099_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
SPR46038.1|1382286_1383735_+	CoA-transferase	NA	NA	NA	NA	NA
SPR46039.1|1383792_1384137_+	putative arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
SPR46040.1|1384243_1384783_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR46041.1|1384875_1385826_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46042.1|1387177_1387582_-	membrane protein	NA	NA	NA	NA	NA
SPR46043.1|1388818_1389142_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46044.1|1389144_1390032_-	putative exported protein	NA	NA	NA	NA	NA
SPR46045.1|1390064_1390490_-	universal stress family protein	NA	NA	NA	NA	NA
SPR46046.1|1390561_1390915_-	partial	NA	NA	NA	NA	NA
SPR46047.1|1391154_1391661_-	putative membrane protein	NA	NA	NA	NA	NA
SPR46048.1|1391699_1393031_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR46049.1|1393090_1393906_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
SPR46050.1|1393902_1394757_+	pyridoxine kinase	NA	NA	NA	NA	NA
SPR46051.1|1394857_1396777_+	ATPase	NA	NA	NA	NA	NA
SPR46052.1|1401729_1403484_-	alpha amylase	NA	NA	NA	NA	NA
SPR46053.1|1403480_1405601_-	glycosyl hydrolase	NA	NA	NA	NA	NA
SPR46054.1|1405605_1407801_-	14-alpha-glucan-branching protein	NA	NA	NA	NA	NA
SPR46055.1|1407797_1411139_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
SPR46056.1|1413941_1414892_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46057.1|1414957_1415137_-	hypothetical protein	NA	NA	NA	NA	NA
SPR46058.1|1415253_1416009_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR46059.1|1415995_1417141_-	hypothetical protein	NA	NA	NA	NA	NA
SPR46060.1|1417194_1418031_-	lysylphosphatidylglycerol synthetase family protein	NA	NA	NA	NA	NA
SPR46061.1|1418048_1418999_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 11
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	1479490	1535044	4160081	transposase	Streptococcus_phage(16.67%)	53	NA	NA
SPR46114.1|1479490_1480441_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46115.1|1480539_1480974_-	putative MerR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR46116.1|1481056_1483393_+	membrane transport ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
SPR46117.1|1483671_1484601_+	IS110 family	NA	NA	NA	NA	NA
SPR46118.1|1484791_1485382_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SPR46119.1|1485472_1485778_-	exported protein	NA	NA	NA	NA	NA
SPR46120.1|1486245_1487253_+	biotin synthase	NA	NA	NA	NA	NA
SPR46121.1|1487249_1488125_+	exported protein	NA	NA	NA	NA	NA
SPR46122.1|1488199_1489666_-	putative membrane transport protein	NA	NA	NA	NA	NA
SPR46123.1|1489677_1490181_-	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
SPR46124.1|1490427_1490859_+	lipoprotein	NA	NA	NA	NA	NA
SPR46125.1|1490868_1491753_-	hydrolase	NA	NA	NA	NA	NA
SPR46126.1|1491770_1495232_-	exported protein	NA	NA	NA	NA	NA
SPR46127.1|1495367_1495853_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
SPR46128.1|1495833_1496085_+	MoaD/ThiS family protein	NA	NA	NA	NA	NA
SPR46129.1|1496090_1496573_+	molybdopterin converting factor	NA	NA	NA	NA	NA
SPR46130.1|1496569_1497091_+	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA	NA
SPR46131.1|1497097_1498303_+	molybdopterin cofactor biosynthesis protein	NA	NA	NA	NA	NA
SPR46132.1|1498447_1499545_-	cyclic pyranopterin monophosphate synthase	NA	NA	NA	NA	NA
SPR46133.1|1499555_1500662_-	molybdenum-binding protein	NA	NA	NA	NA	NA
SPR46134.1|1500796_1501747_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46135.1|1501849_1502434_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46136.1|1502503_1503925_-	argininosuccinate lyase	NA	NA	NA	NA	NA
SPR46137.1|1504032_1505379_+	putative membrane transport protein	NA	NA	NA	NA	NA
SPR46138.1|1505417_1507052_+	NAD synthetase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
SPR46139.1|1507095_1507434_+	nitrogen regulatory protein	NA	NA	NA	NA	NA
SPR46140.1|1507560_1508511_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46141.1|1508507_1508882_-	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
SPR46142.1|1508996_1509341_+	partial	NA	NA	NA	NA	NA
SPR46143.1|1509457_1510915_+	DUF839 domain-containing protein	NA	NA	NA	NA	NA
SPR46144.1|1511994_1512876_-	LysR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR46145.1|1512983_1514612_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR46146.1|1514653_1516171_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR46147.1|1516265_1517210_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR46148.1|1517206_1518094_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR46149.1|1518391_1519294_-	putative ATP/GTP-binding protein	NA	NA	NA	NA	NA
SPR46150.1|1519290_1520556_-	peptidase M48	NA	NA	NA	NA	NA
SPR46151.1|1520600_1521146_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
SPR46152.1|1521179_1521866_+	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
SPR46153.1|1521837_1522767_-	phenylacetic acid degradation operon negative regulatory protein	NA	NA	NA	NA	NA
SPR46154.1|1522938_1523928_+	12-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
SPR46155.1|1523992_1524277_+	phenylacetate-CoA oxygenase subunit PaaB	NA	NA	NA	NA	NA
SPR46156.1|1524292_1525057_+	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
SPR46157.1|1525053_1525560_+	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
SPR46158.1|1525571_1526735_+	PaaK subunit	NA	V5UTY8	Synechococcus_phage	46.7	5.9e-10
SPR46159.1|1526721_1527672_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46160.1|1527759_1529412_+	oxidoreductase	NA	NA	NA	NA	NA
SPR46161.1|1529422_1530211_+	2-(12-epoxy-12-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
SPR46162.1|1530210_1530681_+	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
SPR46163.1|1530755_1532069_+	phenylacetate-coenzyme A ligase	NA	NA	NA	NA	NA
SPR46164.1|1532122_1532728_-	fimbrial protein	NA	NA	NA	NA	NA
SPR46165.1|1532954_1533905_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46166.1|1534093_1535044_+|transposase	transposase for IS1002	transposase	NA	NA	NA	NA
>prophage 12
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	1586919	1644129	4160081	transposase	Klosneuvirus(16.67%)	49	NA	NA
SPR46206.1|1586919_1587870_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46207.1|1588563_1589202_+	partial	NA	NA	NA	NA	NA
SPR46208.1|1590006_1591620_+	autotransporter	NA	NA	NA	NA	NA
SPR46209.1|1591616_1592216_-	hypothetical protein	NA	NA	NA	NA	NA
SPR46210.1|1592450_1593911_+	inosine-5'-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
SPR46211.1|1594007_1595600_+	GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
SPR46212.1|1596212_1597553_+	HipA-like protein	NA	NA	NA	NA	NA
SPR46213.1|1597648_1598275_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SPR46214.1|1598362_1599781_+	membrane efflux protein	NA	NA	NA	NA	NA
SPR46215.1|1600012_1600618_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
SPR46216.1|1601505_1602327_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR46217.1|1602337_1603909_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46218.1|1603937_1604915_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR46219.1|1604941_1605745_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
SPR46220.1|1605741_1606536_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR46221.1|1606543_1607779_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46222.1|1607756_1609418_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR46223.1|1609478_1611206_-	solute transport protein	NA	NA	NA	NA	NA
SPR46224.1|1611317_1612676_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46225.1|1612968_1613919_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46226.1|1613959_1615030_+	FUSC family protein	NA	NA	NA	NA	NA
SPR46227.1|1616102_1617074_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SPR46228.1|1617263_1618214_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46229.1|1618285_1619128_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR46230.1|1619289_1619970_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46231.1|1619963_1621133_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46232.1|1621129_1622161_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
SPR46233.1|1622228_1623446_+	membrane protein	NA	NA	NA	NA	NA
SPR46234.1|1623480_1625013_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR46235.1|1625093_1625717_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46236.1|1625747_1626359_+	membrane transport protein	NA	NA	NA	NA	NA
SPR46237.1|1626394_1626865_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46238.1|1627232_1628300_+	partial	NA	NA	NA	NA	NA
SPR46239.1|1628339_1629851_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR46240.1|1629854_1630814_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR46241.1|1630791_1631646_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR46242.1|1631647_1633282_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
SPR46243.1|1633365_1634427_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
SPR46244.1|1634625_1634895_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46245.1|1634898_1635423_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
SPR46246.1|1635431_1635821_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
SPR46247.1|1635838_1636789_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46248.1|1636785_1637820_-	integral membrane protein	NA	NA	NA	NA	NA
SPR46249.1|1637928_1638567_+	DedA family integral membrane protein	NA	NA	NA	NA	NA
SPR46250.1|1639211_1639925_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46251.1|1640169_1641120_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46252.1|1641259_1641505_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46253.1|1641619_1643068_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR46254.1|1643178_1644129_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 13
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	2027264	2068078	4160081	tRNA,transposase	Klosneuvirus(16.67%)	39	NA	NA
SPR46612.1|2027264_2028215_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46613.1|2028313_2029264_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46614.1|2029362_2031963_-	inner membrane protein	NA	NA	NA	NA	NA
SPR46615.1|2032069_2033074_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR46616.1|2033182_2034523_-	aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
SPR46617.1|2034563_2035592_-	SIS family regulator	NA	NA	NA	NA	NA
SPR46618.1|2035787_2036333_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
SPR46619.1|2036329_2036890_+	L-24-diaminobutyric acid acetyltransferase	NA	NA	NA	NA	NA
SPR46620.1|2036988_2037939_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46621.1|2037962_2038427_-|tRNA	aspartyl-tRNA amidotransferase subunit B	tRNA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
SPR46622.1|2038573_2039782_+	nitric oxide dioxygenase	NA	NA	NA	NA	NA
SPR46623.1|2039825_2040263_+	DNA-binding protein	NA	NA	NA	NA	NA
SPR46624.1|2040381_2041671_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
SPR46625.1|2041736_2042453_-	error-prone DNA polymerase	NA	NA	NA	NA	NA
SPR46626.1|2042495_2044277_-	error-prone DNA polymerase	NA	A0A2H4P750	Pseudomonas_phage	30.0	4.6e-54
SPR46627.1|2044411_2045362_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46628.1|2045460_2046477_-	hypothetical protein	NA	NA	NA	NA	NA
SPR46629.1|2046655_2047690_+	exported protein	NA	NA	NA	NA	NA
SPR46630.1|2047686_2048313_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
SPR46631.1|2048309_2049362_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
SPR46632.1|2049411_2050182_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46633.1|2050232_2051069_+	exported protein	NA	NA	NA	NA	NA
SPR46634.1|2051264_2052005_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR46635.1|2052079_2052823_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR46636.1|2052819_2053215_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR46637.1|2053484_2054258_+	glutamine transport ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
SPR46638.1|2054459_2055203_+	formimidoylglutamase	NA	NA	NA	NA	NA
SPR46639.1|2055395_2056685_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
SPR46640.1|2056626_2058246_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
SPR46641.1|2058295_2059543_-	N-carbamoyl-L-amino acid amidohydrolase	NA	NA	NA	NA	NA
SPR46642.1|2059552_2061262_-	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
SPR46643.1|2061258_2062197_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
SPR46644.1|2062193_2063477_-	membrane protein	NA	NA	NA	NA	NA
SPR46645.1|2063480_2063963_-	membrane protein	NA	NA	NA	NA	NA
SPR46646.1|2063963_2064950_-	exported protein	NA	NA	NA	NA	NA
SPR46647.1|2065122_2065842_-	GntR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR46648.1|2065958_2066909_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46649.1|2066895_2067396_-	hypothetical protein	NA	NA	NA	NA	NA
SPR46650.1|2067625_2068078_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 14
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	2278212	2342566	4160081	transposase	uncultured_Caudovirales_phage(16.67%)	57	NA	NA
SPR46823.1|2278212_2279163_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46824.1|2279416_2281222_+	sulfate transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
SPR46825.1|2281335_2281503_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
SPR46826.1|2281566_2281803_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
SPR46827.1|2282171_2283344_-	transmembrane transport protein	NA	NA	NA	NA	NA
SPR46828.1|2283530_2284805_+	cyclopropane-fatty-acyl-phospholipid synthase	NA	NA	NA	NA	NA
SPR46829.1|2284886_2285837_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46830.1|2285935_2286886_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46831.1|2287337_2288339_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR46832.1|2288511_2289369_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR46833.1|2289365_2290628_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
SPR46834.1|2290728_2291103_+	tautomerase	NA	NA	NA	NA	NA
SPR46835.1|2291175_2292363_+	beta-ketothiolase	NA	NA	NA	NA	NA
SPR46836.1|2292375_2293218_+	spermidine synthase	NA	NA	NA	NA	NA
SPR46837.1|2293331_2294096_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR46838.1|2294046_2295348_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
SPR46839.1|2295356_2296151_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46840.1|2296753_2297698_+	malonyl-CoA synthase	NA	A0A2H4PQM9	Staphylococcus_phage	28.4	1.6e-18
SPR46841.1|2297895_2298867_+	exported protein	NA	NA	NA	NA	NA
SPR46842.1|2299023_2299536_+	superoxide dismutase	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
SPR46843.1|2299694_2300669_+	exported protein	NA	NA	NA	NA	NA
SPR46844.1|2300915_2301668_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR46845.1|2301669_2302464_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
SPR46846.1|2302489_2303296_-	molybdenum-binding protein	NA	NA	NA	NA	NA
SPR46847.1|2303406_2303997_+	lipoprotein	NA	NA	NA	NA	NA
SPR46848.1|2304007_2305186_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46849.1|2305288_2305663_+	DNA-binding protein	NA	NA	NA	NA	NA
SPR46850.1|2305915_2307232_+	efflux system inner membrane protein	NA	NA	NA	NA	NA
SPR46851.1|2307298_2310529_+	efflux system transmembrane protein	NA	NA	NA	NA	NA
SPR46852.1|2312019_2312766_+	pyridoxal phosphate biosynthetic protein	NA	NA	NA	NA	NA
SPR46853.1|2312850_2313312_+	holo-ACP synthase	NA	NA	NA	NA	NA
SPR46854.1|2313349_2314408_+	beta-hexosaminidase	NA	NA	NA	NA	NA
SPR46855.1|2314370_2316200_+	excinuclease ABC subunit C	NA	NA	NA	NA	NA
SPR46856.1|2316239_2316812_+	putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
SPR46857.1|2316975_2317950_+	MFS transporter	NA	NA	NA	NA	NA
SPR46858.1|2318236_2319058_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
SPR46859.1|2319376_2320699_+	isocitrate lyase	NA	NA	NA	NA	NA
SPR46860.1|2321070_2321694_+	membrane protein	NA	NA	NA	NA	NA
SPR46861.1|2321653_2322604_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46862.1|2322685_2323471_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR46863.1|2323474_2324347_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR46864.1|2324424_2325564_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR46865.1|2325922_2327179_+	dioxygenase hydroxylase large subunit	NA	NA	NA	NA	NA
SPR46866.1|2327184_2327712_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46867.1|2327722_2328535_+	enoyl-CoA hydratase/isomerase-like protein	NA	NA	NA	NA	NA
SPR46868.1|2328534_2329257_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR46869.1|2329278_2329593_+	ferredoxin	NA	NA	NA	NA	NA
SPR46870.1|2329610_2330759_+	fatty-acyl-CoA racemase	NA	NA	NA	NA	NA
SPR46871.1|2330789_2331665_-	esterase	NA	NA	NA	NA	NA
SPR46872.1|2331661_2332981_-	acyl-CoA ligase	NA	NA	NA	NA	NA
SPR46873.1|2333053_2334250_-	thiolase	NA	NA	NA	NA	NA
SPR46874.1|2334260_2335631_-	hypothetical protein	NA	NA	NA	NA	NA
SPR46875.1|2335988_2337812_-	DUF3604 domain-containing protein	NA	NA	NA	NA	NA
SPR46876.1|2338435_2339242_+	putative lysR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR46877.1|2339379_2340345_+	exported protein	NA	NA	NA	NA	NA
SPR46878.1|2340443_2341394_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46879.1|2341615_2342566_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 15
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	2431781	2498228	4160081	tRNA,transposase	Klosneuvirus(25.0%)	60	NA	NA
SPR46973.1|2431781_2433077_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR46974.1|2433126_2434398_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
SPR46975.1|2434428_2434935_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
SPR46976.1|2434931_2436080_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
SPR46977.1|2436107_2436533_-	nucleoside diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
SPR46978.1|2436855_2439738_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
SPR46979.1|2439830_2440586_-	outer membrane (scaffolding) protein	NA	NA	NA	NA	NA
SPR46980.1|2441351_2442701_+	two component system sensor histidine kinase	NA	NA	NA	NA	NA
SPR46981.1|2442799_2443750_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46982.1|2443848_2444799_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46983.1|2444872_2445346_+	hypothetical protein	NA	NA	NA	NA	NA
SPR46984.1|2445371_2446580_+	class-V aminotransferase	NA	NA	NA	NA	NA
SPR46985.1|2446576_2447350_-|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SPR46986.1|2447349_2447973_-	ribosome maturation factor	NA	NA	NA	NA	NA
SPR46987.1|2448138_2448399_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
SPR46988.1|2448702_2449284_+	exported protein	NA	NA	NA	NA	NA
SPR46989.1|2449280_2450231_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR46990.1|2450399_2450654_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR46991.1|2450640_2453265_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
SPR46992.1|2453336_2454155_-	exported protein	NA	NA	NA	NA	NA
SPR46993.1|2454151_2454757_-	fimbrial protein	NA	NA	NA	NA	NA
SPR46994.1|2454794_2457647_-	type II/IV secretion system domain protein	NA	NA	NA	NA	NA
SPR46995.1|2457643_2458141_-	hypothetical protein	NA	NA	NA	NA	NA
SPR46996.1|2458115_2459390_-	hypothetical protein	NA	NA	NA	NA	NA
SPR46997.1|2459393_2460971_-	lipoprotein	NA	NA	NA	NA	NA
SPR46998.1|2461118_2461700_-	type IV secretion system protein PtlF domain protein	NA	NA	NA	NA	NA
SPR46999.1|2461877_2463233_-	amidase	NA	NA	NA	NA	NA
SPR47000.1|2463229_2464864_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
SPR47001.1|2464856_2465687_-	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA	NA
SPR47002.1|2465704_2466649_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR47003.1|2466701_2468276_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR47004.1|2468323_2468683_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47005.1|2470146_2471103_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR47006.1|2471252_2472590_-	glycerol-3-phosphate-binding periplasmic protein precursor	NA	NA	NA	NA	NA
SPR47007.1|2472594_2473851_-	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
SPR47008.1|2474046_2475093_-	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehy drase reductase	NA	NA	NA	NA	NA
SPR47009.1|2475150_2475519_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
SPR47010.1|2475649_2476522_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47011.1|2476598_2477501_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR47012.1|2477505_2478561_-	pyridoxal phosphate biosynthetic protein	NA	NA	NA	NA	NA
SPR47013.1|2478557_2479775_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47014.1|2480509_2480770_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47015.1|2481048_2481999_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47016.1|2482199_2483009_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
SPR47017.1|2483133_2484084_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47018.1|2484080_2484974_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47019.1|2485098_2485293_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47020.1|2485292_2485634_-	ferredoxin 2Fe-2S	NA	NA	NA	NA	NA
SPR47021.1|2485643_2487506_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
SPR47022.1|2487635_2488148_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
SPR47023.1|2488150_2488474_-	[Fe-S] cluster formation/repair protein	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
SPR47024.1|2488475_2488886_-	[Fe-S] cluster formation/repair protein	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
SPR47025.1|2488923_2490135_-	cysteine desulfurase	NA	NA	NA	NA	NA
SPR47026.1|2490152_2490665_-	putative DNA-binding protein	NA	NA	NA	NA	NA
SPR47027.1|2490880_2491372_-	low molecular weight protein-tyrosine-phosphatase	NA	NA	NA	NA	NA
SPR47028.1|2491624_2493661_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
SPR47029.1|2493738_2494941_+	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
SPR47030.1|2495069_2495720_+	LexA repressor	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
SPR47031.1|2495946_2497023_-	autotransporter	NA	NA	NA	NA	NA
SPR47032.1|2497277_2498228_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 16
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	2510536	2563147	4160081	tRNA,protease,transposase	Lake_Baikal_phage(16.67%)	45	NA	NA
SPR47046.1|2510536_2512990_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
SPR47047.1|2513178_2514483_-|protease	ATP-dependent Clp protease ATP-binding protein	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
SPR47048.1|2514587_2515241_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
SPR47049.1|2515243_2516554_-	trigger factor	NA	NA	NA	NA	NA
SPR47050.1|2516750_2517311_+	hypothetical protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
SPR47051.1|2517422_2517623_-	cold shock-like protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
SPR47052.1|2517968_2518535_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
SPR47053.1|2518618_2518822_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
SPR47054.1|2519128_2519449_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47055.1|2519490_2519772_-	putative membrane protein	NA	NA	NA	NA	NA
SPR47056.1|2519846_2521103_-	autotransporter	NA	NA	NA	NA	NA
SPR47057.1|2521485_2521815_+	exported protein	NA	NA	NA	NA	NA
SPR47058.1|2522637_2523360_+	N-succinyl-LL-diaminopimelate aminotransferase	NA	NA	NA	NA	NA
SPR47059.1|2523385_2524207_+	2345-tetrahydropyridine-26-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
SPR47060.1|2524206_2525346_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
SPR47061.1|2525352_2526249_+	50S ribosomal protein L3 glutamine methyltransferase	NA	NA	NA	NA	NA
SPR47062.1|2526263_2528171_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
SPR47063.1|2528530_2531143_+	exported protein	NA	NA	NA	NA	NA
SPR47064.1|2531195_2533496_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
SPR47065.1|2533492_2534701_-	fatty acid desaturase	NA	NA	NA	NA	NA
SPR47066.1|2534962_2535337_+	exported protein	NA	NA	NA	NA	NA
SPR47067.1|2535333_2536284_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47068.1|2536382_2537333_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47069.1|2537431_2539426_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
SPR47070.1|2539485_2540451_+	bifunctional riboflavin kinase/FMN adenylyltransferase	NA	NA	NA	NA	NA
SPR47071.1|2540440_2543302_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
SPR47072.1|2543304_2543811_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
SPR47073.1|2543915_2545124_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
SPR47074.1|2545125_2546064_-	membrane protein	NA	NA	NA	NA	NA
SPR47075.1|2546225_2546699_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
SPR47076.1|2546695_2547646_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47077.1|2547744_2548695_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47078.1|2548805_2549246_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47079.1|2549374_2550604_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
SPR47080.1|2550642_2551533_-	exported protein	NA	NA	NA	NA	NA
SPR47081.1|2551538_2552669_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47082.1|2552760_2553249_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47083.1|2553245_2555018_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.4	5.7e-57
SPR47084.1|2555319_2555535_-	putative ABC transporter	NA	NA	NA	NA	NA
SPR47085.1|2555799_2558349_+	cyanophycin synthetase	NA	NA	NA	NA	NA
SPR47086.1|2558419_2560993_+	cyanophycin synthetase	NA	NA	NA	NA	NA
SPR47087.1|2561258_2561459_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47088.1|2561490_2561652_+	putative membrane protein	NA	NA	NA	NA	NA
SPR47089.1|2561709_2562048_+	putative exported protein	NA	NA	NA	NA	NA
SPR47090.1|2562196_2563147_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 17
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	2599446	2659956	4160081	transposase	uncultured_Caudovirales_phage(40.0%)	59	NA	NA
SPR47126.1|2599446_2600397_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47127.1|2600552_2600879_-	monovalent cation/H+ antiporter subunit G	NA	NA	NA	NA	NA
SPR47128.1|2600875_2601157_-	pH adaptation potassium efflux system protein F	NA	NA	NA	NA	NA
SPR47129.1|2601156_2601633_-	monovalent cation/H+ antiporter subunit E	NA	NA	NA	NA	NA
SPR47130.1|2601632_2603261_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
SPR47131.1|2603257_2603602_-	putative pH adaptation potassium efflux protein	NA	NA	NA	NA	NA
SPR47132.1|2603601_2606535_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
SPR47133.1|2606956_2607703_+	partial	NA	NA	NA	NA	NA
SPR47134.1|2607693_2608644_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47135.1|2608742_2609039_-	putative membrane protein	NA	NA	NA	NA	NA
SPR47136.1|2609160_2610063_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR47137.1|2610067_2610781_-	short chain dehydrogenase	NA	NA	NA	NA	NA
SPR47138.1|2610794_2611766_-	exported protein	NA	NA	NA	NA	NA
SPR47139.1|2611869_2613282_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47140.1|2613515_2613866_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR47141.1|2613869_2615057_+	membrane protein	NA	NA	NA	NA	NA
SPR47142.1|2615230_2615503_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	71.1	1.9e-28
SPR47143.1|2615480_2616218_+	NADPH-dependent FMN reductase	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
SPR47144.1|2616214_2616403_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR47145.1|2616511_2617462_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47146.1|2617458_2617887_-	LamB/YcsF domain protein	NA	NA	NA	NA	NA
SPR47147.1|2618080_2619274_-	partial	NA	NA	NA	NA	NA
SPR47148.1|2619288_2620251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR47149.1|2620366_2621320_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR47150.1|2621329_2622322_-	exported protein	NA	NA	NA	NA	NA
SPR47151.1|2622373_2623129_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR47152.1|2623193_2623883_-	short chain dehydrogenase	NA	NA	NA	NA	NA
SPR47153.1|2624104_2625055_+	hydrolase	NA	NA	NA	NA	NA
SPR47154.1|2625085_2626282_+	lactate dehydrogenase	NA	NA	NA	NA	NA
SPR47155.1|2626278_2627052_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
SPR47156.1|2627119_2628091_+	exported protein	NA	NA	NA	NA	NA
SPR47157.1|2628176_2629121_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR47158.1|2629098_2629968_-	alpha-ketoglutarate-dependent 24-dichlorophenoxyacetate dioxygenase	NA	NA	NA	NA	NA
SPR47159.1|2630211_2630835_+	glutathione S-transferase	NA	NA	NA	NA	NA
SPR47160.1|2630976_2631147_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47161.1|2631149_2631449_+	putative DNA-binding protein	NA	NA	NA	NA	NA
SPR47162.1|2631462_2634537_-	autotransporter	NA	NA	NA	NA	NA
SPR47163.1|2634666_2635341_+	response regulator protein	NA	NA	NA	NA	NA
SPR47164.1|2635333_2637148_+	two component system sensor histidine kinase	NA	NA	NA	NA	NA
SPR47165.1|2637201_2638149_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47166.1|2638253_2639204_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47167.1|2639756_2641382_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
SPR47168.1|2641431_2642466_-	nonspecific acid phosphatase	NA	NA	NA	NA	NA
SPR47169.1|2642468_2643815_-	exported protein	NA	NA	NA	NA	NA
SPR47170.1|2643811_2645326_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47171.1|2645316_2646804_-	von Willebrand factor type A domain protein	NA	NA	NA	NA	NA
SPR47172.1|2646800_2647742_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47173.1|2647750_2648719_-	regulatory protein	NA	NA	NA	NA	NA
SPR47174.1|2648774_2649227_-	formylglycine-generating enzyme family protein	NA	NA	NA	NA	NA
SPR47175.1|2650258_2651227_+	exported protein	NA	NA	NA	NA	NA
SPR47176.1|2651404_2652394_+	exported protein	NA	NA	NA	NA	NA
SPR47177.1|2652440_2653199_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR47178.1|2653388_2654126_+	membrane protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
SPR47179.1|2654224_2655175_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47180.1|2655359_2656142_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
SPR47181.1|2656135_2656837_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SPR47182.1|2657076_2657679_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
SPR47183.1|2657654_2658542_-	oxidoreductase	NA	NA	NA	NA	NA
SPR47184.1|2659005_2659956_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 18
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	2699233	2765562	4160081	transposase	Ectocarpus_siliculosus_virus(10.0%)	60	NA	NA
SPR47215.1|2699233_2700184_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47216.1|2700203_2701109_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47217.1|2701186_2701885_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47218.1|2702044_2702989_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR47219.1|2702998_2704486_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
SPR47220.1|2704485_2705553_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
SPR47221.1|2705616_2707029_-	glutamine synthetase	NA	NA	NA	NA	NA
SPR47222.1|2707214_2708435_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
SPR47223.1|2708456_2709407_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47224.1|2709505_2710147_-	non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
SPR47225.1|2710273_2712076_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47226.1|2711953_2713645_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
SPR47227.1|2713727_2714633_-	probable transcriptional regulator	NA	NA	NA	NA	NA
SPR47228.1|2714814_2716191_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47229.1|2716357_2717098_-	ribonuclease PH	NA	NA	NA	NA	NA
SPR47230.1|2717234_2718161_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47231.1|2718433_2718589_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47232.1|2718601_2718730_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47233.1|2718726_2719011_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR47234.1|2719069_2720560_-	AMP nucleosidase	NA	NA	NA	NA	NA
SPR47235.1|2720804_2721404_+	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
SPR47236.1|2721408_2722179_-	putative oxidoreductase	NA	NA	NA	NA	NA
SPR47237.1|2722416_2723130_+	cytochrome C	NA	NA	NA	NA	NA
SPR47238.1|2723126_2724044_+	cytochrome C	NA	NA	NA	NA	NA
SPR47239.1|2724179_2724812_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
SPR47240.1|2724853_2725057_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
SPR47241.1|2725081_2727361_+	guanosine-3'5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
SPR47242.1|2727373_2728102_-	glutamine transport ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
SPR47243.1|2728098_2728698_-	glutamine ABC transporter permease	NA	NA	NA	NA	NA
SPR47244.1|2728826_2729579_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR47245.1|2729760_2730711_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47246.1|2731119_2731518_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47247.1|2731603_2732509_+	dihydrodipicolinate synthase	NA	NA	NA	NA	NA
SPR47248.1|2732526_2733648_+	lipoprotein	NA	NA	NA	NA	NA
SPR47249.1|2733736_2734351_-	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
SPR47250.1|2734405_2734741_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47251.1|2735009_2736197_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47252.1|2736193_2738791_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
SPR47253.1|2739045_2739261_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47254.1|2739716_2740271_-	chromate reductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
SPR47255.1|2740541_2741099_+	membrane protein	NA	NA	NA	NA	NA
SPR47256.1|2741210_2742515_+	exported protein	NA	NA	NA	NA	NA
SPR47257.1|2742610_2744023_+	thiol oxidoreductase	NA	NA	NA	NA	NA
SPR47258.1|2744128_2745130_+	aminopeptidase	NA	NA	NA	NA	NA
SPR47259.1|2745110_2746232_+	exported protein	NA	NA	NA	NA	NA
SPR47260.1|2746330_2747281_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47261.1|2747277_2747904_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47262.1|2747963_2748815_+	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
SPR47263.1|2748981_2749518_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47264.1|2749514_2750279_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47265.1|2750348_2751299_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47266.1|2751397_2752006_-	recombination protein RecR	NA	NA	NA	NA	NA
SPR47267.1|2752056_2752383_-	nucleoid-associated protein	NA	NA	NA	NA	NA
SPR47268.1|2752429_2754655_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
SPR47269.1|2755322_2758727_-	nuclease/helicase	NA	NA	NA	NA	NA
SPR47270.1|2758739_2761400_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47271.1|2761421_2761568_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47272.1|2761603_2762806_-	membrane protein	NA	NA	NA	NA	NA
SPR47273.1|2763492_2764605_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
SPR47274.1|2764611_2765562_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 19
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	2805235	2865675	4160081	tRNA,transposase	Planktothrix_phage(28.57%)	56	NA	NA
SPR47320.1|2805235_2807185_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
SPR47321.1|2807572_2808349_+	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR47322.1|2808354_2808747_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47323.1|2809168_2810119_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47324.1|2810115_2810754_-	hypothetical protein	NA	A0A127AWB9	Bacillus_phage	37.3	2.0e-20
SPR47325.1|2811244_2812195_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47326.1|2812674_2813331_-	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
SPR47327.1|2813345_2815013_-	membrane protein	NA	NA	NA	NA	NA
SPR47328.1|2815015_2815645_-	membrane protein	NA	NA	NA	NA	NA
SPR47329.1|2815856_2816951_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR47330.1|2817095_2817908_-|tRNA	tRNA pseudouridine synthase A	tRNA	NA	NA	NA	NA
SPR47331.1|2817911_2819495_-	membrane protein	NA	NA	NA	NA	NA
SPR47332.1|2819665_2820796_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SPR47333.1|2820982_2822059_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
SPR47334.1|2822140_2822791_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
SPR47335.1|2822805_2824209_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
SPR47336.1|2824492_2825311_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR47337.1|2825307_2826012_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
SPR47338.1|2826911_2828027_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47339.1|2828060_2828435_-	exported protein	NA	NA	NA	NA	NA
SPR47340.1|2828457_2829615_-	formate dehydrogenase subunit C	NA	NA	NA	NA	NA
SPR47341.1|2829627_2829861_-	putative lipoprotein	NA	NA	NA	NA	NA
SPR47342.1|2829857_2830250_-	formate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
SPR47343.1|2830495_2833465_-	formate dehydrogenase	NA	NA	NA	NA	NA
SPR47344.1|2833479_2833689_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47345.1|2833840_2834470_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47346.1|2834466_2836524_-	iron-sulfur binding protein	NA	NA	NA	NA	NA
SPR47347.1|2836580_2837261_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47348.1|2837257_2837818_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47349.1|2837824_2838922_-	putative iron sulfur binding protein	NA	NA	NA	NA	NA
SPR47350.1|2839074_2839668_+	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA	NA
SPR47351.1|2839664_2840957_+	molybdopterin biosynthesis protein	NA	NA	NA	NA	NA
SPR47352.1|2840970_2841513_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
SPR47353.1|2841522_2842359_-	lipoprotein	NA	NA	NA	NA	NA
SPR47354.1|2842392_2843454_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
SPR47355.1|2843495_2844521_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
SPR47356.1|2845007_2845958_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47357.1|2845944_2846103_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47358.1|2846136_2847831_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR47359.1|2847827_2848913_+	probable ATP-binding component of ABC transporter	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
SPR47360.1|2848960_2849860_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR47361.1|2849870_2850515_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
SPR47362.1|2850679_2851387_-	partial	NA	NA	NA	NA	NA
SPR47363.1|2851536_2854779_-	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
SPR47364.1|2854789_2855944_-	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
SPR47365.1|2856170_2857133_+	transaldolase B	NA	H6WFR1	Cyanophage	29.2	7.5e-11
SPR47366.1|2857231_2858182_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47367.1|2858280_2859231_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47368.1|2859240_2859930_-	membrane protein	NA	NA	NA	NA	NA
SPR47369.1|2859989_2860427_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47370.1|2860472_2861366_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
SPR47371.1|2861413_2862586_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
SPR47372.1|2862582_2863737_-	probable acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR47373.1|2863933_2864284_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47374.1|2864273_2864708_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47375.1|2864724_2865675_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 20
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	2911768	2948482	4160081	protease,transposase	Planktothrix_phage(33.33%)	29	NA	NA
SPR47422.1|2911768_2912719_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47423.1|2912817_2913768_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47424.1|2913764_2914559_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47425.1|2914590_2915295_-	oxidoreductase	NA	NA	NA	NA	NA
SPR47426.1|2915369_2916170_-	SurF1-family protein	NA	NA	NA	NA	NA
SPR47427.1|2916166_2916574_-	cytochrome ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
SPR47428.1|2916570_2917212_-	cytochrome ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
SPR47429.1|2917204_2919226_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
SPR47430.1|2919262_2919754_-	partial	NA	NA	NA	NA	NA
SPR47431.1|2920465_2921797_+	membrane transport protein	NA	NA	NA	NA	NA
SPR47432.1|2921793_2922744_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47433.1|2923297_2924344_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
SPR47434.1|2924450_2924717_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47435.1|2925424_2925763_+	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SPR47436.1|2925788_2926514_+	ammonium transporter	NA	NA	NA	NA	NA
SPR47437.1|2927091_2930031_-	autotransporter BapC	NA	NA	NA	NA	NA
SPR47438.1|2930314_2930917_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SPR47439.1|2931013_2932303_+	membrane transport protein	NA	NA	NA	NA	NA
SPR47440.1|2932360_2933092_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
SPR47441.1|2933088_2933892_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
SPR47442.1|2933888_2934977_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SPR47443.1|2934973_2935903_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR47444.1|2936051_2937197_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR47445.1|2937218_2938169_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47446.1|2938499_2942321_-	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA	NA
SPR47447.1|2942477_2943146_-	lipoprotein	NA	NA	NA	NA	NA
SPR47448.1|2943150_2944824_-	membrane protein	NA	NA	NA	NA	NA
SPR47449.1|2944842_2946039_-	exported protein	NA	NA	NA	NA	NA
SPR47450.1|2946166_2948482_-|protease	ATP-dependent Clp protease ATP-binding protein	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
>prophage 21
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	2955981	3013963	4160081	tRNA,protease,transposase	uncultured_Mediterranean_phage(28.57%)	58	NA	NA
SPR47453.1|2955981_2956296_-|protease	ATP-dependent Clp protease adaptor protein ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
SPR47454.1|2956523_2956769_+	putative cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
SPR47455.1|2956890_2957382_+	exported protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	4.8e-14
SPR47456.1|2957481_2958687_-	beta-ketoadipyl CoA thiolase	NA	NA	NA	NA	NA
SPR47457.1|2958802_2960200_-	putative chloride-channel protein	NA	NA	NA	NA	NA
SPR47458.1|2960316_2960895_-	superoxide dismutase	NA	NA	NA	NA	NA
SPR47459.1|2962526_2963477_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47460.1|2963757_2964378_+	putative biopolymer transport protein	NA	NA	NA	NA	NA
SPR47461.1|2964374_2964788_+	biopolymer transport protein	NA	NA	NA	NA	NA
SPR47462.1|2964784_2965828_+	putative tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
SPR47463.1|2965883_2966072_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47464.1|2966081_2966846_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
SPR47465.1|2966936_2967593_+	adenylate kinase	NA	NA	NA	NA	NA
SPR47466.1|2967684_2968443_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
SPR47467.1|2968468_2970070_+	MurJ-like protein	NA	NA	NA	NA	NA
SPR47468.1|2970270_2971275_+	membrane protein	NA	NA	NA	NA	NA
SPR47469.1|2971375_2971639_+	30s ribosomal protein s20	NA	NA	NA	NA	NA
SPR47470.1|2971756_2972524_-	5-keto-4-deoxy-D-glucarate aldolase	NA	NA	NA	NA	NA
SPR47471.1|2973123_2974074_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47472.1|2974070_2974622_-	partial	NA	NA	NA	NA	NA
SPR47473.1|2975449_2976409_-	partial	NA	NA	NA	NA	NA
SPR47474.1|2976457_2977570_-	malate dehydrogenase	NA	NA	NA	NA	NA
SPR47475.1|2977626_2978577_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47476.1|2978785_2979007_-	lipoprotein	NA	NA	NA	NA	NA
SPR47477.1|2979220_2980627_-	threonine synthase	NA	NA	NA	NA	NA
SPR47478.1|2980623_2981928_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
SPR47479.1|2981924_2983112_-	aminotransferase	NA	NA	NA	NA	NA
SPR47480.1|2983328_2983781_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47481.1|2983783_2984248_+	peroxiredoxin	NA	NA	NA	NA	NA
SPR47482.1|2984327_2986007_+	phosphate starvation protein PhoH	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
SPR47483.1|2986111_2987089_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
SPR47484.1|2987168_2988137_+	exported protein	NA	NA	NA	NA	NA
SPR47485.1|2988157_2989531_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
SPR47486.1|2989527_2990364_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47487.1|2990480_2990936_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
SPR47488.1|2990951_2991224_-	30s ribosomal protein s18	NA	NA	NA	NA	NA
SPR47489.1|2991316_2991565_-	primosomal replication protein n	NA	NA	NA	NA	NA
SPR47490.1|2991687_2992068_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
SPR47491.1|2992287_2993085_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47492.1|2993241_2995104_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
SPR47493.1|2995153_2996065_-	geranyltranstransferase	NA	NA	NA	NA	NA
SPR47494.1|2996069_2996336_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
SPR47495.1|2996422_2997292_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR47496.1|2997427_2998393_+	exported protein	NA	NA	NA	NA	NA
SPR47497.1|2998536_2999487_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47498.1|2999612_3000623_+	membrane protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
SPR47499.1|3000770_3001922_+	iron-sulfur protein	NA	NA	NA	NA	NA
SPR47500.1|3002005_3002869_-	IS481 family	NA	NA	NA	NA	NA
SPR47501.1|3003064_3004537_-	cation transport protein	NA	NA	NA	NA	NA
SPR47502.1|3004547_3004958_-	putative thioesterase	NA	NA	NA	NA	NA
SPR47503.1|3005021_3006068_-	putative integral membrane protein	NA	NA	NA	NA	NA
SPR47504.1|3006174_3007053_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR47505.1|3007066_3008263_-	hydrolase	NA	NA	NA	NA	NA
SPR47506.1|3008339_3010016_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
SPR47507.1|3010012_3010963_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47508.1|3011083_3011980_-	inositol monophosphatase	NA	NA	NA	NA	NA
SPR47509.1|3012137_3013325_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34)oxidoreductase MnmC	tRNA	NA	NA	NA	NA
SPR47510.1|3013270_3013963_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34)oxidoreductase MnmC	tRNA	NA	NA	NA	NA
>prophage 22
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	3019722	3065292	4160081	transposase	Bacillus_virus(20.0%)	45	NA	NA
SPR47515.1|3019722_3020673_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47516.1|3020753_3021902_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
SPR47517.1|3021958_3022909_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47518.1|3023007_3023313_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47519.1|3023341_3023776_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47520.1|3023777_3025022_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47521.1|3025018_3025669_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR47522.1|3025743_3026727_-	exported protein	NA	NA	NA	NA	NA
SPR47523.1|3027074_3027422_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47524.1|3027892_3028792_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47525.1|3028788_3029655_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR47526.1|3029641_3030469_+	ABC transport protein inner membrane component	NA	NA	NA	NA	NA
SPR47527.1|3030479_3031607_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
SPR47528.1|3031599_3032592_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR47529.1|3032684_3033923_+	IS481 family	NA	NA	NA	NA	NA
SPR47530.1|3033967_3035227_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR47531.1|3035233_3035986_+	DNA-binding protein	NA	NA	NA	NA	NA
SPR47532.1|3036037_3036223_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47533.1|3036381_3036963_+	putative MerR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR47534.1|3037042_3037654_+	hydrolase	NA	NA	NA	NA	NA
SPR47535.1|3037798_3039907_+	exported protein	NA	NA	NA	NA	NA
SPR47536.1|3039903_3040854_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47537.1|3040957_3041521_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SPR47538.1|3041681_3042422_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
SPR47539.1|3042739_3043363_+	IS3 family	NA	NA	NA	NA	NA
SPR47540.1|3043823_3044603_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47541.1|3044433_3045324_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47542.1|3045336_3046287_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47543.1|3046273_3047314_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47544.1|3047322_3047934_-	partial	NA	NA	NA	NA	NA
SPR47545.1|3048250_3049201_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47546.1|3049197_3050106_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR47547.1|3050232_3051069_+	probable 3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
SPR47548.1|3051581_3052691_+	outer membrane porin protein	NA	NA	NA	NA	NA
SPR47549.1|3052752_3053703_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47550.1|3053895_3054678_-	short chain dehydrogenase	NA	NA	NA	NA	NA
SPR47551.1|3054691_3055441_-	short chain dehydrogenase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
SPR47552.1|3055468_3056815_-	membrane transport protein	NA	NA	NA	NA	NA
SPR47553.1|3056840_3057770_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47554.1|3057885_3058791_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR47555.1|3058787_3059738_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47556.1|3059857_3061057_-	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
SPR47557.1|3061129_3061822_-	hypothetical protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
SPR47558.1|3061870_3064297_-	cation-transporting ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
SPR47559.1|3064341_3065292_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 23
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	3239200	3311960	4160081	tRNA,transposase	Xanthomonas_phage(14.29%)	60	NA	NA
SPR47719.1|3239200_3240151_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47720.1|3240159_3240708_+	lipid A palmitoyltransferase	NA	NA	NA	NA	NA
SPR47721.1|3240704_3241313_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47722.1|3241495_3241954_-	glutamate uptake regulatory protein	NA	NA	NA	NA	NA
SPR47723.1|3241972_3243229_-	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
SPR47724.1|3243284_3244097_-	oxidoreductase	NA	NA	NA	NA	NA
SPR47725.1|3244211_3244766_+	cysteine dioxygenase	NA	NA	NA	NA	NA
SPR47726.1|3244775_3245765_-	membrane protein	NA	NA	NA	NA	NA
SPR47727.1|3245944_3246664_-	VOC family protein	NA	NA	NA	NA	NA
SPR47728.1|3246680_3249416_-	protein translocase subunit SecA	NA	NA	NA	NA	NA
SPR47729.1|3249595_3250582_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
SPR47730.1|3250710_3251118_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47731.1|3251229_3252153_-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
SPR47732.1|3252381_3253566_-	cell division protein FtsZ	NA	NA	NA	NA	NA
SPR47733.1|3253754_3254981_-	cell division protein FtsA	NA	NA	NA	NA	NA
SPR47734.1|3254985_3255807_-	cell division protein FtsQ	NA	NA	NA	NA	NA
SPR47735.1|3255819_3256770_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SPR47736.1|3256766_3258173_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
SPR47737.1|3258169_3259243_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
SPR47738.1|3259239_3260433_-	lipid II flippase FtsW	NA	NA	NA	NA	NA
SPR47739.1|3260429_3261962_-	UDP-N-acetylmuramoylalanine--D-glutamate ligase	NA	NA	NA	NA	NA
SPR47740.1|3261958_3263128_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
SPR47741.1|3263117_3265955_-	bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase	NA	NA	NA	NA	NA
SPR47742.1|3265951_3267682_-	peptidoglycan synthetase	NA	NA	NA	NA	NA
SPR47743.1|3267678_3267957_-	cell division protein FtsL	NA	NA	NA	NA	NA
SPR47744.1|3267956_3269051_-	S-adenosyl-methyltransferase	NA	NA	NA	NA	NA
SPR47745.1|3269059_3269410_-	cell division protein MraZ	NA	NA	NA	NA	NA
SPR47746.1|3270290_3272099_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
SPR47747.1|3272138_3273203_-	dihydroorotase	NA	NA	NA	NA	NA
SPR47748.1|3273214_3274408_-	hydrolase	NA	NA	NA	NA	NA
SPR47749.1|3274557_3274836_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47750.1|3275164_3275530_-	putative membrane protein	NA	NA	NA	NA	NA
SPR47751.1|3282281_3282743_-	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
SPR47752.1|3282910_3284023_+	hemolysin	NA	NA	NA	NA	NA
SPR47753.1|3284090_3284651_-	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SPR47754.1|3284674_3285007_-	cytochrome C552 precursor	NA	NA	NA	NA	NA
SPR47755.1|3284990_3286679_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
SPR47756.1|3286798_3287587_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
SPR47757.1|3287561_3288134_-	DUF541 domain-containing protein	NA	NA	NA	NA	NA
SPR47758.1|3288294_3289245_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47759.1|3289689_3290001_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47760.1|3290000_3290447_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47761.1|3290693_3291644_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47762.1|3291742_3292693_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47763.1|3292982_3293447_+	putative membrane protein	NA	NA	NA	NA	NA
SPR47764.1|3293461_3294967_+	membrane protein	NA	NA	NA	NA	NA
SPR47765.1|3295223_3296828_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR47766.1|3296955_3297789_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR47767.1|3297837_3298191_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
SPR47768.1|3298229_3299180_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47769.1|3299318_3300071_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
SPR47770.1|3300345_3302034_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
SPR47771.1|3302122_3303313_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47772.1|3303327_3304422_-|tRNA	tRNA CCA-pyrophosphorylase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
SPR47773.1|3304418_3306545_-	putative transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
SPR47774.1|3306557_3307238_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
SPR47775.1|3307473_3308889_+	integral membrane transport protein	NA	NA	NA	NA	NA
SPR47776.1|3308890_3309910_+	aminohydrolase	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
SPR47777.1|3309973_3310945_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR47778.1|3311009_3311960_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 24
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	3331659	3373873	4160081	protease,transposase	Erwinia_phage(50.0%)	39	NA	NA
SPR47799.1|3331659_3332199_+|protease	ATP-dependent protease subunit HsIV	protease	NA	NA	NA	NA
SPR47800.1|3332220_3333555_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
SPR47801.1|3333568_3333874_-	RND transporter	NA	NA	NA	NA	NA
SPR47802.1|3334298_3334880_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
SPR47803.1|3334961_3335912_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47804.1|3336010_3336961_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47805.1|3337177_3338752_+	phospholipase D	NA	NA	NA	NA	NA
SPR47806.1|3338758_3339868_-	molybdenum ABC transporter ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
SPR47807.1|3339879_3340560_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
SPR47808.1|3340581_3341337_-	molybdate-binding periplasmic protein precursor	NA	NA	NA	NA	NA
SPR47809.1|3341472_3342354_-	putative hydrolase	NA	NA	NA	NA	NA
SPR47810.1|3342444_3343026_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47811.1|3343118_3343241_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47812.1|3343286_3343586_-	exported protein	NA	NA	NA	NA	NA
SPR47813.1|3343737_3344217_-	membrane protein	NA	NA	NA	NA	NA
SPR47814.1|3344232_3344598_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47815.1|3344936_3346373_-	probable TonB-dependent receptor	NA	NA	NA	NA	NA
SPR47816.1|3346369_3346798_-	regulatory protein	NA	NA	NA	NA	NA
SPR47817.1|3346888_3347839_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47818.1|3347920_3348292_-	partial	NA	NA	NA	NA	NA
SPR47819.1|3348366_3349140_-	putative molybdate-binding periplasmic protein	NA	NA	NA	NA	NA
SPR47820.1|3349272_3350283_-	putative exported protein	NA	NA	NA	NA	NA
SPR47821.1|3350434_3352090_-	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR47822.1|3352144_3352486_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR47823.1|3352499_3353939_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47824.1|3354071_3354887_-	probable MerR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR47825.1|3355080_3356031_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47826.1|3356027_3356990_-	MFS transporter	NA	NA	NA	NA	NA
SPR47827.1|3357424_3358366_+	putative membrane protein	NA	NA	NA	NA	NA
SPR47828.1|3358592_3359333_+	putative TetR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR47829.1|3359418_3360369_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47830.1|3360755_3361241_+	partial	NA	NA	NA	NA	NA
SPR47831.1|3361256_3361760_+	partial	NA	NA	NA	NA	NA
SPR47832.1|3361810_3363382_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR47833.1|3363714_3365568_+	autotransporter	NA	NA	NA	NA	NA
SPR47834.1|3365612_3368177_+	autotransporter	NA	NA	NA	NA	NA
SPR47835.1|3368595_3369546_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47836.1|3370695_3372126_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47837.1|3372922_3373873_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 25
LS398590	Bordetella pertussis strain VS393 genome assembly, chromosome: I	4160081	3532301	3641779	4160081	tRNA,integrase,transposase	Acinetobacter_phage(21.05%)	104	3584811:3584828	3619612:3619629
SPR47973.1|3532301_3533252_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47974.1|3533350_3534484_-	partial	NA	NA	NA	NA	NA
SPR47975.1|3535008_3535998_+	partial	NA	NA	NA	NA	NA
SPR47976.1|3535994_3536153_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47977.1|3536173_3536962_-	indole-3-glycerol phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
SPR47978.1|3536958_3537990_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
SPR47979.1|3538008_3538572_-	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
SPR47980.1|3538627_3540148_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
SPR47981.1|3540411_3541116_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
SPR47982.1|3541123_3541852_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
SPR47983.1|3541966_3542341_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
SPR47984.1|3542383_3543673_+	membrane-bound transglycosylase	NA	NA	NA	NA	NA
SPR47985.1|3543669_3544839_+	ubiquinone biosynthesis hydroxylase family protein	NA	NA	NA	NA	NA
SPR47986.1|3544865_3545675_+	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
SPR47987.1|3545734_3546670_+	2-hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
SPR47988.1|3546682_3547633_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47989.1|3547731_3548694_-|tRNA	tRNA 2-thiocytidine biosynthesis protein	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
SPR47990.1|3548725_3549085_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
SPR47991.1|3549209_3550112_+	oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
SPR47992.1|3550113_3551880_-	hypothetical protein	NA	NA	NA	NA	NA
SPR47993.1|3551920_3552697_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
SPR47994.1|3552993_3554061_+	hypothetical protein	NA	NA	NA	NA	NA
SPR47995.1|3554020_3554971_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR47996.1|3555822_3556143_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR47997.1|3556215_3557097_+	ATP synthase A chain	NA	NA	NA	NA	NA
SPR47998.1|3557213_3557456_+	ATP synthase c chain	NA	NA	NA	NA	NA
SPR47999.1|3557593_3558064_+	ATP synthase B chain	NA	NA	NA	NA	NA
SPR48000.1|3558076_3558616_+	ATP synthase delta chain	NA	NA	NA	NA	NA
SPR48001.1|3558650_3560192_+	ATP synthase subunit alpha	NA	NA	NA	NA	NA
SPR48002.1|3560290_3561196_+	ATP synthase subunit gamma	NA	NA	NA	NA	NA
SPR48003.1|3561238_3562639_+	ATP synthase subunit beta	NA	NA	NA	NA	NA
SPR48004.1|3562648_3563071_+	ATP synthase epsilon chain	NA	NA	NA	NA	NA
SPR48005.1|3563253_3564138_+	hypothetical protein	NA	NA	NA	NA	NA
SPR48006.1|3564213_3565290_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
SPR48007.1|3565596_3567699_+	primosomal protein N'	NA	NA	NA	NA	NA
SPR48008.1|3567741_3569811_+	ATP-dependent DNA helicase	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
SPR48009.1|3569909_3570860_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48010.1|3570988_3572122_-	peptidase	NA	NA	NA	NA	NA
SPR48011.1|3572165_3573071_-	hypothetical protein	NA	NA	NA	NA	NA
SPR48012.1|3573073_3574774_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
SPR48013.1|3574770_3575691_-	binding-protein-dependent transport permease	NA	NA	NA	NA	NA
SPR48014.1|3575698_3576676_-	putative binding-protein-dependent transport permease	NA	NA	NA	NA	NA
SPR48015.1|3576734_3577694_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
SPR48016.1|3577817_3578738_-	partial	NA	NA	NA	NA	NA
SPR48017.1|3579743_3579980_-	hypothetical protein	NA	NA	NA	NA	NA
SPR48018.1|3580106_3580970_-	ADP-dependent (S)-NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
SPR48019.1|3581058_3581880_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
SPR48020.1|3581959_3582697_-	putative enoyl-CoA hydratase/isomerase	NA	NA	NA	NA	NA
SPR48021.1|3582693_3583665_-	hypothetical protein	NA	NA	NA	NA	NA
SPR48022.1|3583838_3584462_+	TetR family transcriptional repressor	NA	NA	NA	NA	NA
SPR48023.1|3584506_3585655_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
3584811:3584828	attL	CCGACGACCAGCGCCAGC	NA	NA	NA	NA
SPR48024.1|3585638_3586394_-	hypothetical protein	NA	NA	NA	NA	NA
SPR48025.1|3587075_3587897_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR48026.1|3587978_3588929_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48027.1|3589269_3590220_+|transposase	transposase IS1002 family	transposase	NA	NA	NA	NA
SPR48028.1|3590318_3591269_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48029.1|3591565_3592063_+	blue copper protein	NA	NA	NA	NA	NA
SPR48030.1|3592105_3593881_+	copper resitance protein	NA	NA	NA	NA	NA
SPR48031.1|3593888_3594755_+	copper resistance protein	NA	NA	NA	NA	NA
SPR48032.1|3594761_3595487_-	enoyl-CoA hydratase/isomerase	NA	NA	NA	NA	NA
SPR48033.1|3596061_3596829_+	hypothetical protein	NA	NA	NA	NA	NA
SPR48034.1|3596665_3597436_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
SPR48035.1|3597749_3598340_+	cysteine dioxygenase	NA	NA	NA	NA	NA
SPR48036.1|3598373_3599702_-	amidase	NA	NA	NA	NA	NA
SPR48037.1|3599776_3600922_-	binding-protein-dependent transport protein	NA	NA	NA	NA	NA
SPR48038.1|3601033_3602032_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR48039.1|3601997_3602429_+	membrane protein	NA	NA	NA	NA	NA
SPR48040.1|3602563_3603472_+	MFS transporter	NA	NA	NA	NA	NA
SPR48041.1|3603945_3604830_+	membrane protein	NA	NA	NA	NA	NA
SPR48042.1|3604826_3606032_-	phospholipase	NA	NA	NA	NA	NA
SPR48043.1|3606028_3606889_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
SPR48044.1|3607001_3608792_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
SPR48045.1|3608832_3609483_-	putative membrane protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.6e-11
SPR48046.1|3609498_3609807_-	hypothetical protein	NA	NA	NA	NA	NA
SPR48047.1|3609972_3611259_-	membrane protein	NA	NA	NA	NA	NA
SPR48048.1|3611385_3612636_-	partial	NA	A0A2I2L3D3	Orpheovirus	27.6	6.1e-13
SPR48049.1|3612692_3613643_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48050.1|3613741_3614692_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48051.1|3614773_3616462_-	partial	NA	NA	NA	NA	NA
SPR48052.1|3616643_3617858_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
SPR48053.1|3617963_3618953_+	conserved hypothetical protein	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
SPR48054.1|3618949_3619558_+	probable hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
SPR48055.1|3619570_3620200_+	exported protein	NA	NA	NA	NA	NA
3619612:3619629	attR	GCTGGCGCTGGTCGTCGG	NA	NA	NA	NA
SPR48056.1|3620196_3620817_+	exported protein	NA	NA	NA	NA	NA
SPR48057.1|3620848_3621640_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
SPR48058.1|3621993_3622215_+	partial	NA	NA	NA	NA	NA
SPR48059.1|3622482_3622947_+	nitrogen regulatory IIA protein	NA	NA	NA	NA	NA
SPR48060.1|3622965_3623892_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
SPR48061.1|3623945_3625232_-	cytochrome C	NA	NA	NA	NA	NA
SPR48062.1|3625280_3626147_-	cytochrome C	NA	NA	NA	NA	NA
SPR48063.1|3626162_3627035_+	conserved hypothetical protein	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
SPR48064.1|3627031_3627982_+	lipoprotein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
SPR48065.1|3628080_3629031_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48066.1|3629492_3629912_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR48067.1|3629898_3632280_-	dehydrogenase/oxidase	NA	NA	NA	NA	NA
SPR48068.1|3632272_3633649_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
SPR48069.1|3633664_3634660_-	45-dihydroxyphthalate decarboxylase	NA	NA	NA	NA	NA
SPR48070.1|3634678_3635671_-	exported protein	NA	NA	NA	NA	NA
SPR48071.1|3635911_3636472_-	probable flavoprotein	NA	NA	NA	NA	NA
SPR48072.1|3636476_3636803_-	glutaredoxin	NA	NA	NA	NA	NA
SPR48073.1|3636839_3637652_-	release factor glutamine methyltransferase	NA	NA	NA	NA	NA
SPR48074.1|3637662_3638745_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
SPR48075.1|3638831_3640106_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
SPR48076.1|3640828_3641779_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
