The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483299	Mannheimia haemolytica strain NCTC10609 genome assembly, chromosome: 1	2515193	158570	181163	2515193	protease,integrase,terminase,capsid	Burkholderia_virus(10.0%)	28	169935:169950	181358:181373
SQE29839.1|158570_159425_+|protease	Immunoglobulin A1 protease autotransporter precursor	protease	NA	NA	NA	NA
SQE29840.1|159698_160571_+	Adhesion and penetration protein autotransporter precursor	NA	NA	NA	NA	NA
SQE29841.1|160523_160847_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE29842.1|161278_161602_-	Predicted transcriptional regulator	NA	A4JWV1	Burkholderia_virus	43.5	3.0e-12
SQE29843.1|161579_161930_-	putative addiction module killer protein	NA	NA	NA	NA	NA
SQE29844.1|162946_163699_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE29845.1|163725_164520_-	Phage anti-repressor protein	NA	A0A0R6PHG7	Moraxella_phage	46.3	9.2e-15
SQE29846.1|164531_164768_-	Predicted transcriptional regulator	NA	NA	NA	NA	NA
SQE29847.1|164931_165270_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE29848.1|165358_165805_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE29849.1|166259_166580_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE29850.1|166572_167160_-	Uncharacterized phage-associated protein	NA	A0A139ZPG5	Marinitoga_camini_virus	30.6	4.1e-12
SQE29851.1|167344_167743_-	Helix-turn-helix	NA	NA	NA	NA	NA
SQE29852.1|167785_168052_-	Plasmid stabilisation system protein	NA	A0A1S5NR91	Burkholderia_phage	43.0	8.4e-13
SQE29853.1|168435_169662_-|integrase	Prophage CP4-57 integrase	integrase	A0A1V0E8G8	Vibrio_phage	39.9	3.3e-80
169935:169950	attL	TTTGGTGGAGCTGGGG	NA	NA	NA	NA
SQE29854.1|170449_171829_-	phage/plasmid primase, P4 family, C-terminal domain	NA	Q7M2A8	Enterobacteria_phage	31.6	5.4e-55
SQE29855.1|171877_172180_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE29856.1|172166_172301_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE29857.1|172338_172533_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE29858.1|172526_173417_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE29859.1|173409_173613_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE29860.1|174631_174832_-	Predicted transcriptional regulator	NA	NA	NA	NA	NA
SQE29861.1|175006_175975_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE29862.1|176080_176725_-|terminase	Phage small terminase subunit	terminase	Q19US0	Mannheimia_phage	46.7	9.7e-39
SQE29863.1|176730_177753_-|capsid	phage major capsid protein, P2 family	capsid	A0A077KEQ8	Ralstonia_phage	57.0	2.7e-99
SQE29864.1|177767_178490_-|capsid	Phage capsid scaffolding protein (GPO) serine peptidase	capsid	A4PE29	Ralstonia_virus	58.8	4.5e-45
SQE29865.1|178510_179188_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE29866.1|179963_181163_-|integrase	Prophage CP4-57 integrase	integrase	X2KXI6	Campylobacter_phage	33.6	1.5e-40
181358:181373	attR	TTTGGTGGAGCTGGGG	NA	NA	NA	NA
>prophage 2
LS483299	Mannheimia haemolytica strain NCTC10609 genome assembly, chromosome: 1	2515193	1459599	1512856	2515193	capsid,tail,protease,integrase,tRNA	Acinetobacter_phage(16.67%)	59	1504141:1504160	1508246:1508265
SQE31239.1|1459599_1460109_-|tRNA	tRNA pseudouridine synthase C	tRNA	NA	NA	NA	NA
SQE31240.1|1460164_1460329_-|tRNA	tRNA pseudouridine synthase C	tRNA	NA	NA	NA	NA
SQE31241.1|1460482_1460794_-	Domain of uncharacterised function, DUF446	NA	NA	NA	NA	NA
SQE31242.1|1460881_1461919_+	Tryptophan biosynthesis protein TrpCF	NA	A0A0P0IR83	Acinetobacter_phage	37.7	4.1e-31
SQE31243.1|1461902_1462232_+	Tryptophan biosynthesis protein TrpCF	NA	NA	NA	NA	NA
SQE31244.1|1462655_1463270_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC	tRNA	NA	NA	NA	NA
SQE31245.1|1463245_1464022_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC	tRNA	NA	NA	NA	NA
SQE31246.1|1464057_1464324_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC	tRNA	NA	NA	NA	NA
SQE31247.1|1464580_1464814_-	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
SQE31248.1|1464762_1465311_-	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
SQE31249.1|1465267_1465375_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE31250.1|1465408_1465876_-	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	NA	NA	NA	NA	NA
SQE31251.1|1465895_1466495_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
SQE31252.1|1466475_1466922_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
SQE31253.1|1466921_1467713_-	Outer membrane protein 26 precursor	NA	NA	NA	NA	NA
SQE31254.1|1467792_1470174_-	Omp85	NA	NA	NA	NA	NA
SQE31255.1|1470288_1471599_-|protease	Regulator of sigma E protease	protease	NA	NA	NA	NA
SQE31256.1|1471602_1472472_-	Phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SQE31257.1|1472495_1473209_-	Undecaprenyl pyrophosphate synthase	NA	R9W0U9	Flavobacterium_phage	42.2	4.8e-23
SQE31258.1|1473367_1474075_-	Hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
SQE31259.1|1474366_1475368_-	Biotin synthase	NA	NA	NA	NA	NA
SQE31260.1|1475460_1477068_-	Phosphoenolpyruvate carboxykinase [ATP]	NA	A0A2H4PQN1	Staphylococcus_phage	50.3	5.6e-144
SQE31261.1|1477342_1477621_+	Cell division protein FtsB	NA	NA	NA	NA	NA
SQE31262.1|1477638_1478322_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
SQE31263.1|1478323_1478803_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
SQE31264.1|1478917_1479775_-	Domain of uncharacterised function (DUF477)	NA	NA	NA	NA	NA
SQE31265.1|1479771_1480230_-	Domain of uncharacterised function (DUF477)	NA	NA	NA	NA	NA
SQE31266.1|1480311_1480896_-	LemA family	NA	NA	NA	NA	NA
SQE31267.1|1481073_1481937_+	putative chloramphenical resistance permease RarD	NA	NA	NA	NA	NA
SQE31268.1|1481982_1482093_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE31269.1|1482089_1482584_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE31270.1|1482774_1484439_-	EIIBC-Fru	NA	NA	NA	NA	NA
SQE31271.1|1484464_1485409_-	Tagatose-6-phosphate kinase	NA	NA	NA	NA	NA
SQE31272.1|1485422_1486901_-	Pseudo-HPr	NA	NA	NA	NA	NA
SQE31273.1|1487188_1487743_+	1,4-alpha-glucan branching enzyme GlgB	NA	NA	NA	NA	NA
SQE31274.1|1487691_1489410_+	1,4-alpha-glucan branching enzyme GlgB	NA	NA	NA	NA	NA
SQE31275.1|1489428_1491372_+	Glycogen debranching enzyme	NA	NA	NA	NA	NA
SQE31276.1|1491434_1491851_+	Glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
SQE31277.1|1491886_1492747_+	Glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
SQE31278.1|1492761_1494306_+	Glycogen synthase	NA	NA	NA	NA	NA
SQE31279.1|1494401_1494755_+	glycogen phosphorylase	NA	A0A140XAG6	Dickeya_phage	50.0	8.5e-13
SQE31280.1|1494790_1496902_+	Maltodextrin phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	39.0	5.1e-12
SQE31281.1|1496988_1497705_-|tRNA	Uncharacterized tRNA/rRNA methyltransferase HI_0380	tRNA	NA	NA	NA	NA
SQE31282.1|1497884_1499423_+	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
SQE31283.1|1499437_1500883_+	NAD(P) transhydrogenase subunit beta	NA	NA	NA	NA	NA
SQE31284.1|1500941_1501877_-	HTH-type transcriptional regulator gltC	NA	NA	NA	NA	NA
SQE31285.1|1501986_1503102_-	Aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SQE31286.1|1503476_1503782_+	Uncharacterised protein	NA	NA	NA	NA	NA
1504141:1504160	attL	CGTGTAACTAAACGTGTAAC	NA	NA	NA	NA
SQE31287.1|1504513_1504909_+|tail	Phage minor tail protein U	tail	K7PJP5	Enterobacteria_phage	26.6	5.6e-05
SQE31288.1|1504919_1506788_+|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	63.9	8.1e-78
SQE31289.1|1506946_1507282_-|integrase	Prophage CP4-57 integrase	integrase	NA	NA	NA	NA
SQE31290.1|1507302_1507638_-|integrase	Prophage CP4-57 integrase	integrase	NA	NA	NA	NA
SQE31291.1|1507597_1508188_-|integrase	Prophage CP4-57 integrase	integrase	A0A0P0IRB7	Acinetobacter_phage	37.2	1.2e-14
SQE31292.1|1508500_1508827_-	Preprotein translocase band 1 subunit	NA	NA	NA	NA	NA
1508246:1508265	attR	CGTGTAACTAAACGTGTAAC	NA	NA	NA	NA
SQE31293.1|1508932_1509304_-	DNA topoisomerase 3	NA	A0A1X9I6W8	Streptococcus_phage	36.8	1.7e-08
SQE31294.1|1509296_1510853_-	DNA topoisomerase 3	NA	A0A1X9I6W8	Streptococcus_phage	29.3	2.9e-20
SQE31295.1|1510925_1511753_-	Penicillin-insensitive murein endopeptidase precursor	NA	NA	NA	NA	NA
SQE31296.1|1511771_1512224_-	Chorismate synthase	NA	A0A291AU41	Pandoravirus	44.7	9.8e-30
SQE31297.1|1512589_1512856_-	Chorismate synthase	NA	A0A291AU41	Pandoravirus	55.3	2.9e-21
>prophage 3
LS483299	Mannheimia haemolytica strain NCTC10609 genome assembly, chromosome: 1	2515193	1568234	1572548	2515193		Haemophilus_phage(50.0%)	7	NA	NA
SQE31377.1|1568234_1568858_+	Uncharacterised protein	NA	A0A0M3LR35	Mannheimia_phage	99.4	2.1e-94
SQE31378.1|1569021_1569666_-	Uncharacterised protein	NA	F6MIM2	Haemophilus_phage	64.4	7.1e-74
SQE31379.1|1569885_1570020_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE31380.1|1570030_1570483_-	Phage anti-repressor protein	NA	G9L6G1	Escherichia_phage	38.6	3.6e-08
SQE31381.1|1570436_1570625_-	Phage anti-repressor protein	NA	Q7Y5W2	Haemophilus_phage	57.9	8.5e-12
SQE31382.1|1570808_1572149_-	Integrase core domain	NA	A0A0M3LPN5	Mannheimia_phage	38.4	1.1e-81
SQE31383.1|1572269_1572548_-	DNA-binding transcriptional regulator Nlp	NA	F6MII4	Haemophilus_phage	58.8	4.5e-17
>prophage 4
LS483299	Mannheimia haemolytica strain NCTC10609 genome assembly, chromosome: 1	2515193	1924207	1931041	2515193	tRNA	Bacillus_phage(33.33%)	9	NA	NA
SQE31776.1|1924207_1924519_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	49.5	6.3e-20
SQE31777.1|1924476_1925094_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.6	2.9e-32
SQE31778.1|1925229_1925415_-	Carbon storage regulator	NA	A0A2I7RT00	Vibrio_phage	66.7	8.4e-12
SQE31779.1|1925504_1927247_-|tRNA	Alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	32.9	2.2e-13
SQE31780.1|1927224_1928133_-|tRNA	Alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	40.4	4.4e-61
SQE31781.1|1928327_1928753_-	Universal stress protein A homolog	NA	NA	NA	NA	NA
SQE31782.1|1928983_1929757_+	Fumarate and nitrate reduction regulatory protein	NA	NA	NA	NA	NA
SQE31783.1|1929900_1930692_+	Enoyl-[acyl-carrier-protein] reductase [NADH] FabI	NA	NA	NA	NA	NA
SQE31784.1|1930744_1931041_-	Bor protein	NA	A0A2R2X2B2	Escherichia_phage	42.3	2.1e-12
>prophage 5
LS483299	Mannheimia haemolytica strain NCTC10609 genome assembly, chromosome: 1	2515193	1971051	1981602	2515193		Mannheimia_phage(70.0%)	14	NA	NA
SQE31830.1|1971051_1973910_-	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	30.6	8.0e-69
SQE31831.1|1974194_1974488_-	Uncharacterised protein	NA	A0A0M3LSV5	Mannheimia_phage	97.9	2.2e-46
SQE31832.1|1974631_1975021_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQE31833.1|1974992_1975292_+	Antitoxin HigA	NA	NA	NA	NA	NA
SQE31834.1|1975300_1975459_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE31835.1|1975468_1976536_-	Uncharacterised protein	NA	A0A0M3LR06	Mannheimia_phage	98.3	4.5e-25
SQE31836.1|1976556_1976757_-	Uncharacterized protein conserved in bacteria, prophage-related	NA	NA	NA	NA	NA
SQE31837.1|1976887_1977571_+	Peptidase S24-like	NA	K7PKK1	Enterobacteria_phage	31.6	2.8e-20
SQE31838.1|1977645_1978026_+	Uncharacterised protein	NA	A0A0M3LQX0	Mannheimia_phage	100.0	1.6e-73
SQE31839.1|1978018_1978516_+	Uncharacterised protein	NA	A0A0M3LP99	Mannheimia_phage	97.9	5.9e-44
SQE31840.1|1978647_1978830_+	Probable mRNA interferase HicA	NA	A0A0M3LQ86	Mannheimia_phage	51.7	3.6e-07
SQE31841.1|1978868_1979288_+	Antitoxin HicB	NA	Q7Y3V7	Yersinia_phage	50.4	1.1e-27
SQE31842.1|1979623_1980268_+	Site-specific recombinase XerC	NA	A0A0M3LS39	Mannheimia_phage	83.6	1.2e-97
SQE31843.1|1980561_1981602_+	Integrase core domain	NA	A0A0M3LQ52	Mannheimia_phage	99.7	3.2e-201
>prophage 6
LS483299	Mannheimia haemolytica strain NCTC10609 genome assembly, chromosome: 1	2515193	2012928	2021999	2515193		Erysipelothrix_phage(50.0%)	7	NA	NA
SQE31870.1|2012928_2013876_-	DNA gyrase subunit B	NA	A0A172JHT4	Bacillus_phage	37.2	3.7e-47
SQE31871.1|2014007_2014949_-	Restriction endonuclease	NA	A0A2K5B2C2	Erysipelothrix_phage	34.4	2.4e-38
SQE31872.1|2014905_2016645_-	type III restriction-modification system StyLTI enzyme res	NA	A0A2K5B256	Erysipelothrix_phage	41.7	3.6e-104
SQE31873.1|2016654_2018736_-	putative methyltransferase	NA	A0A2K5B255	Erysipelothrix_phage	47.9	8.5e-161
SQE31874.1|2018935_2019811_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
SQE31875.1|2019803_2020565_-	Glycerol-3-phosphate regulon repressor	NA	A0A077SK06	Escherichia_phage	29.2	1.2e-19
SQE31876.1|2020631_2021999_-	Adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	46.4	3.1e-111
>prophage 7
LS483299	Mannheimia haemolytica strain NCTC10609 genome assembly, chromosome: 1	2515193	2147229	2207178	2515193	capsid,tail,portal,terminase,protease,tRNA,head	Mannheimia_phage(39.58%)	86	NA	NA
SQE32016.1|2147229_2148681_-|tRNA	tRNA sulfurtransferase	tRNA	NA	NA	NA	NA
SQE32017.1|2148794_2149655_-	Bifunctional protein FolD	NA	A0A249XZQ2	Enterococcus_phage	35.2	2.0e-31
SQE32018.1|2150088_2151084_-	site-specific tyrosine recombinase XerC	NA	A0A077KGX2	Edwardsiella_phage	36.2	2.4e-60
SQE32019.1|2151345_2152188_-	Site-specific DNA methylase	NA	F6MIM2	Haemophilus_phage	66.5	1.5e-108
SQE32020.1|2152506_2152716_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32021.1|2152718_2153153_-	Uncharacterised protein	NA	A0A0M3LPG0	Mannheimia_phage	53.0	1.4e-33
SQE32022.1|2153145_2153367_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32023.1|2153376_2153805_-	Uncharacterised protein	NA	S4T7U9	Vibrio_phage	39.1	4.6e-05
SQE32024.1|2153817_2154399_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32025.1|2154464_2155268_-	Uncharacterized conserved protein	NA	I3PUY7	Vibrio_phage	40.9	1.2e-49
SQE32026.1|2155352_2155700_-	Uncharacterised protein	NA	A0A192Y6G0	Salmonella_phage	51.5	2.7e-19
SQE32027.1|2156007_2156199_-	Helix-destabilizing protein	NA	A0A2I7QRJ7	Vibrio_phage	64.8	2.4e-14
SQE32028.1|2156383_2156569_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32029.1|2157211_2157808_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32030.1|2157819_2158584_-	Abi-like protein	NA	NA	NA	NA	NA
SQE32031.1|2158736_2159111_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32032.1|2159123_2159780_-	Uncharacterized HTH-type transcriptional regulator CBU_1416	NA	A0A0M3LSL8	Mannheimia_phage	42.0	1.9e-37
SQE32033.1|2159904_2160093_+	DNA-binding transcriptional regulator DicC	NA	A5VW97	Enterobacteria_phage	62.1	1.3e-12
SQE32034.1|2160150_2160834_+	Uncharacterized phage-encoded protein	NA	A0A2I7RHG4	Vibrio_phage	51.3	8.1e-52
SQE32035.1|2160830_2161877_+	Conserved phage C-terminus (Phg_2220_C)	NA	M4SQA9	Psychrobacter_phage	52.6	2.4e-23
SQE32036.1|2161887_2162430_+	phage N-6-adenine-methyltransferase	NA	A0A0M3LNW2	Mannheimia_phage	47.5	7.9e-42
SQE32037.1|2162431_2162557_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32038.1|2162556_2163585_+	Protein of uncharacterised function (DUF968)	NA	S5MW46	Escherichia_phage	35.9	4.1e-47
SQE32039.1|2163574_2163937_+	Crossover junction endodeoxyribonuclease rusA	NA	A0A0M3LPZ2	Mannheimia_phage	33.9	3.9e-13
SQE32040.1|2163926_2164286_+	Phage antitermination protein Q	NA	NA	NA	NA	NA
SQE32041.1|2164364_2164691_+	Uncharacterised protein	NA	H6WRV3	Salmonella_phage	39.6	2.2e-15
SQE32042.1|2164729_2165089_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32043.1|2165296_2165542_+	Uncharacterised protein	NA	A0A0M3LR95	Mannheimia_phage	77.8	5.5e-27
SQE32044.1|2165534_2166104_+	Phage-related lysozyme (muraminidase)	NA	A0A0M3LQY4	Mannheimia_phage	96.8	1.5e-104
SQE32045.1|2166076_2166427_+	Protein of uncharacterised function (DUF2570)	NA	A0A0M3LSP1	Mannheimia_phage	83.6	1.3e-16
SQE32046.1|2166371_2166605_+	Uncharacterised protein	NA	A0A0M3LNX0	Mannheimia_phage	85.1	1.6e-31
SQE32047.1|2166741_2167137_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32048.1|2167140_2167491_+	HNH endonuclease	NA	A0A1P8DTD1	Proteus_phage	65.2	1.2e-40
SQE32049.1|2167602_2168088_+|terminase	Phage terminase, small subunit	terminase	A0A0R6PIJ3	Moraxella_phage	48.3	8.6e-32
SQE32050.1|2168084_2169788_+|terminase	Phage terminase-like protein, large subunit	terminase	Q8HAD6	Salmonella_phage	69.7	1.3e-236
SQE32051.1|2169784_2169937_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32052.1|2169933_2171151_+|portal	phage portal protein, HK97 family	portal	A0A1W6JP33	Morganella_phage	64.6	2.6e-146
SQE32053.1|2171143_2171743_+|head,protease	phage prohead protease, HK97 family	head,protease	A0A1W6JP53	Morganella_phage	74.0	5.2e-79
SQE32054.1|2171808_2173017_+|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	Q8SBH8	Shigella_phage	62.9	2.2e-137
SQE32055.1|2173068_2173389_+|head,tail	Phage gp6-like head-tail connector protein	head,tail	Q8SBH7	Shigella_phage	32.4	7.5e-08
SQE32056.1|2173430_2173766_+|head,tail	Bacteriophage head-tail adaptor	head,tail	A0A0K2CZB5	Paenibacillus_phage	36.9	8.1e-13
SQE32057.1|2173746_2174226_+	phage protein, HK97 gp10 family	NA	A0A0R6PHU8	Moraxella_phage	28.4	2.0e-09
SQE32058.1|2174222_2174567_+	Protein of uncharacterised function (DUF3168)	NA	NA	NA	NA	NA
SQE32059.1|2174571_2175228_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32060.1|2175285_2175702_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32061.1|2175746_2175977_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32062.1|2176047_2176284_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32063.1|2176337_2179763_+|tail	Phage-related minor tail protein	tail	A0A0E3JPV7	Enterobacteria_phage	24.6	2.3e-46
SQE32064.1|2179772_2180108_+	Phage-related protein	NA	A0A1W6JNT2	Morganella_phage	32.1	6.6e-07
SQE32065.1|2180107_2180839_+|tail	phage minor tail protein L	tail	A0A0M3LPR8	Mannheimia_phage	54.1	1.3e-71
SQE32066.1|2180840_2181614_+	NlpC/P60 family	NA	A0A0M3LP75	Mannheimia_phage	46.6	8.0e-64
SQE32067.1|2181631_2182144_+|tail	Phage-related protein, tail component	tail	A0A0M3LQC4	Mannheimia_phage	49.4	3.5e-31
SQE32068.1|2182215_2187621_+	Phage-related protein	NA	Q9FZU3	Neisseria_meningitidis_phage	40.9	8.6e-197
SQE32069.1|2187683_2188025_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32070.1|2188344_2189400_-	site-specific tyrosine recombinase XerC	NA	A0A077KGX2	Edwardsiella_phage	38.1	5.1e-61
SQE32071.1|2189654_2189876_-	Uncharacterised protein	NA	A0A0M3LNT4	Mannheimia_phage	84.1	2.1e-17
SQE32072.1|2189883_2190258_-	Uncharacterised protein	NA	A0A0M3LPT1	Mannheimia_phage	98.4	1.1e-66
SQE32073.1|2190397_2190505_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32074.1|2190583_2191258_-	Uncharacterized phage-encoded protein	NA	A0A0M3LQ72	Mannheimia_phage	91.3	1.1e-56
SQE32075.1|2191495_2191750_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32076.1|2191846_2192350_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32077.1|2192394_2192643_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32078.1|2192755_2193214_-	Helix-destabilizing protein	NA	F8TUL2	EBPR_podovirus	48.7	6.0e-35
SQE32079.1|2193308_2193905_+|tail	Bacteriophage tail assembly protein	tail	K7PH52	Enterobacterial_phage	78.0	1.8e-87
SQE32080.1|2193908_2194304_+|tail	Phage minor tail protein U	tail	NA	NA	NA	NA
SQE32081.1|2194335_2194977_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32082.1|2195059_2195461_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32083.1|2195505_2195736_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32084.1|2195803_2196070_+	addiction module antitoxin, RelB/DinJ family	NA	NA	NA	NA	NA
SQE32085.1|2196073_2196343_+	mRNA interferase YafQ	NA	NA	NA	NA	NA
SQE32086.1|2196417_2196681_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32087.1|2196740_2196863_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32088.1|2196855_2197449_+|tail	Phage-related minor tail protein	tail	A0A125RN77	Pseudomonas_phage	40.0	1.9e-20
SQE32089.1|2197474_2197717_+	NlpC/P60 family	NA	A0A0M3LQI5	Mannheimia_phage	89.2	5.4e-35
SQE32090.1|2197706_2198426_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32091.1|2198647_2199274_+|tail	Phage-related protein, tail component	tail	A0A0M3LPS1	Mannheimia_phage	82.3	5.8e-89
SQE32092.1|2199322_2199934_+	Uncharacterised protein	NA	A0A0M3LQG1	Mannheimia_phage	61.4	7.7e-54
SQE32093.1|2200044_2200518_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32094.1|2200571_2201612_-	Integrase core domain	NA	A0A0M3LQ52	Mannheimia_phage	99.4	1.2e-200
SQE32095.1|2201695_2201821_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32096.1|2202116_2202416_-	Antitoxin HigA	NA	NA	NA	NA	NA
SQE32097.1|2202387_2202777_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQE32098.1|2202920_2203214_+	Uncharacterised protein	NA	A0A0M3LSV5	Mannheimia_phage	97.9	2.2e-46
SQE32099.1|2203592_2204891_-	Adenylosuccinate synthetase	NA	A0A285PX35	Cedratvirus	36.4	2.7e-72
SQE32100.1|2205064_2205952_-|protease	Modulator of FtsH protease HflC	protease	NA	NA	NA	NA
SQE32101.1|2205954_2207178_-|protease	Modulator of FtsH protease HflK	protease	NA	NA	NA	NA
>prophage 8
LS483299	Mannheimia haemolytica strain NCTC10609 genome assembly, chromosome: 1	2515193	2217306	2224563	2515193	tRNA	uncultured_virus(33.33%)	12	NA	NA
SQE32112.1|2217306_2218074_-	DNA topoisomerase 4 subunit B	NA	G3M9Z3	Bacillus_virus	45.0	4.1e-44
SQE32113.1|2218034_2218544_-	DNA topoisomerase 4 subunit B	NA	A0A1C3NF27	Phage_NCTB	28.2	4.5e-07
SQE32114.1|2218540_2219095_-	DNA topoisomerase 4 subunit B	NA	A0A127AW23	Bacillus_phage	37.7	4.7e-18
SQE32115.1|2219091_2219211_-	DNA topoisomerase 4 subunit B	NA	NA	NA	NA	NA
SQE32116.1|2219418_2219643_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE32117.1|2219685_2220015_+	Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters	NA	NA	NA	NA	NA
SQE32118.1|2220053_2220440_-	Copper export regulator	NA	NA	NA	NA	NA
SQE32119.1|2220527_2220728_+	copper exporting ATPase	NA	A0A218MNH0	uncultured_virus	47.7	8.8e-07
SQE32120.1|2220780_2220963_+	Copper-exporting P-type ATPase A	NA	NA	NA	NA	NA
SQE32121.1|2220956_2222903_+	Copper-exporting P-type ATPase A	NA	A0A218MNH6	uncultured_virus	35.3	5.8e-87
SQE32122.1|2223023_2223809_-|tRNA	tRNA pseudouridine synthase A	tRNA	NA	NA	NA	NA
SQE32123.1|2223873_2224563_-	GTP cyclohydrolase 1	NA	I6XC45	Vibriophage	49.5	1.1e-51
