The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483298	Streptococcus pyogenes strain NCTC8225 genome assembly, chromosome: 1	1906873	36589	48952	1906873		Synechococcus_phage(28.57%)	9	NA	NA
SQE37692.1|36589_40363_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.0	1.6e-40
SQE37693.1|40523_41978_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.3	6.3e-54
SQE37694.1|42005_43028_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.4	6.9e-63
SQE37695.1|43195_43750_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
SQE37696.1|43933_45481_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	9.8e-45
SQE37697.1|45539_45878_-	Autolysin	NA	NA	NA	NA	NA
SQE37698.1|45947_46664_-	bacterial SH3 domain protein	NA	A0A1S5PRY3	Streptococcus_phage	33.1	4.9e-07
SQE37699.1|46826_48182_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQE37700.1|48460_48952_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	1.9e-18
>prophage 2
LS483298	Streptococcus pyogenes strain NCTC8225 genome assembly, chromosome: 1	1906873	96129	106253	1906873	tRNA	Streptococcus_phage(50.0%)	19	NA	NA
SQE37754.1|96129_96789_-	transcriptional regulator	NA	A0A1W6JQE6	Staphylococcus_phage	29.7	1.6e-12
SQE37755.1|96951_97152_+	transcriptional regulator	NA	NA	NA	NA	NA
SQE37756.1|97169_97793_+	BRO family, N-terminal domain protein	NA	A0A1W6JPC3	Staphylococcus_phage	43.3	2.2e-40
SQE37757.1|97792_98062_+	Prophage antirepressor	NA	NA	NA	NA	NA
SQE37758.1|98304_98487_+	phage protein	NA	NA	NA	NA	NA
SQE37759.1|98498_98831_+	phage protein	NA	NA	NA	NA	NA
SQE37760.1|98827_98968_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37761.1|98948_99146_+	phage protein	NA	NA	NA	NA	NA
SQE37762.1|99157_99487_+	phage protein	NA	NA	NA	NA	NA
SQE37763.1|99489_99762_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
SQE37764.1|99762_100629_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	73.1	4.0e-120
SQE37765.1|100640_102035_+	Predicted P-loop ATPase and inactivated derivatives	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	7.7e-49
SQE37766.1|102327_102582_+	phage protein	NA	NA	NA	NA	NA
SQE37767.1|102578_102752_+	phage protein	NA	A0A1X9I5U0	Streptococcus_phage	57.9	5.6e-10
SQE37768.1|102757_102940_+	phage protein	NA	NA	NA	NA	NA
SQE37769.1|103013_103502_+	Uncharacterised protein	NA	A0A1X9I5V2	Streptococcus_phage	58.0	1.3e-48
SQE37770.1|103888_104251_+	phage protein	NA	NA	NA	NA	NA
SQE37771.1|104225_104372_+	Phage encoded transcriptional regulator, ArpU family	NA	NA	NA	NA	NA
SQE37772.1|104993_106253_-|tRNA	tyrosyl-tRNA synthetase	tRNA	A0A1S6UA79	Serratia_phage	40.7	1.5e-72
>prophage 3
LS483298	Streptococcus pyogenes strain NCTC8225 genome assembly, chromosome: 1	1906873	192610	236073	1906873	terminase,portal,protease,tRNA,tail,capsid,integrase,holin	Streptococcus_phage(55.56%)	66	191496:191513	236070:236087
191496:191513	attL	GCTGAGGGCTATTTTTAT	NA	NA	NA	NA
SQE37846.1|192610_193753_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.9	2.9e-86
SQE37847.1|193970_194282_+	Helper of Tim protein 13	NA	NA	NA	NA	NA
SQE37848.1|194285_194825_+	biotin transporter	NA	NA	NA	NA	NA
SQE37849.1|194964_195744_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
SQE37850.1|195743_196259_+|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
SQE37851.1|196872_198093_-	S-layer protein	NA	NA	NA	NA	NA
SQE37852.1|198480_199623_-|integrase	integrase	integrase	A0A141E0H2	Streptococcus_phage	56.5	2.4e-117
SQE37853.1|199749_200283_-	putative lipoprotein	NA	A0A1S5SAH9	Streptococcus_phage	55.3	1.3e-20
SQE37854.1|200294_200675_-	phage protein	NA	Q938N7	Temperate_phage	64.0	1.4e-40
SQE37855.1|200684_201035_-	phage transcriptional regulator, Cro/CI family	NA	A0A1S5SFC6	Streptococcus_phage	60.3	4.8e-32
SQE37856.1|201345_201561_+	phage protein	NA	M1Q1B4	Streptococcus_phage	78.6	2.2e-24
SQE37857.1|201634_201769_+	Uncharacterised protein	NA	A3F616	Streptococcus_phage	100.0	2.1e-17
SQE37858.1|201765_202509_+	phage associated antirepressor	NA	A3F617	Streptococcus_phage	86.1	1.5e-120
SQE37859.1|202584_202797_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37860.1|202830_203022_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37861.1|203053_203209_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37862.1|203210_203753_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37863.1|203883_204144_+	Uncharacterised protein	NA	A0A1S5SAL2	Streptococcus_phage	73.3	1.1e-28
SQE37864.1|204162_204351_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37865.1|204337_205684_+	DNA polymerase III delta prime subunit	NA	A0A1P8VVQ6	Streptococcus_phage	84.9	9.3e-209
SQE37866.1|205670_206273_+	Uncharacterised protein	NA	A0A1P8VVT8	Streptococcus_phage	93.0	1.7e-106
SQE37867.1|206250_206997_+	DNA replication protein, putative	NA	A0A1P8VVR3	Streptococcus_phage	96.8	2.2e-135
SQE37868.1|206997_207822_+	phage DNA replication protein	NA	A0A1P8VVV9	Streptococcus_phage	79.6	1.4e-127
SQE37869.1|207821_208049_+	phage protein	NA	C5J991	Streptococcus_phage	50.7	7.1e-13
SQE37870.1|208062_208239_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37871.1|208235_208520_+	phage protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	93.6	5.9e-41
SQE37872.1|208516_209161_+	modification methylase	NA	A0A140HLV8	Bacillus_phage	65.1	2.1e-65
SQE37873.1|209148_209304_+	DNA methylase	NA	A0A1S5SFL7	Streptococcus_phage	60.5	1.6e-08
SQE37874.1|209509_209749_+	DNA methylase	NA	A0A1X9I6Y5	Streptococcus_phage	61.5	8.0e-15
SQE37875.1|209738_210212_+	gp29	NA	A3F631	Streptococcus_phage	98.7	8.0e-91
SQE37876.1|210330_210663_+	gp24	NA	A0A1S5SCX1	Streptococcus_phage	57.4	1.2e-32
SQE37877.1|210655_210985_+	cro/CI family prophage LambdaSa2	NA	A0A1P8VVV5	Streptococcus_phage	45.5	3.2e-22
SQE37878.1|210981_211155_+	Uncharacterised protein	NA	A0A1J0MGB9	Staphylococcus_phage	46.9	1.1e-05
SQE37879.1|211157_211406_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37880.1|211402_211582_+	Uncharacterised protein	NA	A0A060QN65	Streptococcus_phage	55.3	1.1e-05
SQE37881.1|211590_211740_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37882.1|211708_211909_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37883.1|211932_212352_+	RNA polymerase ECF family sigma factor	NA	A0A1S5SF97	Streptococcus_phage	42.0	1.1e-19
SQE37884.1|212443_213010_+|integrase	prophage LambdaSa2, site-specific recombinase phage integrase family protein	integrase	A0A1S5SCL7	Streptococcus_phage	61.0	1.2e-61
SQE37885.1|213181_213475_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37886.1|213471_213801_+	HNH endonuclease	NA	A0A1S7FZ53	Listeria_phage	49.5	6.7e-20
SQE37887.1|213922_214270_+	Uncharacterised protein	NA	E2ELI1	Clostridium_phage	34.5	4.0e-07
SQE37888.1|214250_215909_+|terminase	putative phage terminase, large subunit	terminase	E2ELI2	Clostridium_phage	44.4	4.0e-129
SQE37889.1|216107_217343_+|portal	HK97 family phage portal protein	portal	A0A1S7FYX7	Listeria_phage	37.6	3.6e-74
SQE37890.1|217346_218063_+|protease	Prophage Clp protease-like protein	protease	D2XR17	Bacillus_phage	42.9	1.4e-38
SQE37891.1|218098_219292_+|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A0A1B1P752	Bacillus_phage	30.8	1.7e-41
SQE37892.1|219306_219594_+	HeH/LEM domain	NA	NA	NA	NA	NA
SQE37893.1|219613_219907_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37894.1|219908_220286_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37895.1|220257_220629_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37896.1|220637_221060_+	Uncharacterised protein	NA	A0A1S7FZ20	Listeria_phage	48.5	3.1e-25
SQE37897.1|221070_221658_+	Uncharacterised protein	NA	A0A1B1P778	Bacillus_phage	36.4	1.1e-28
SQE37898.1|221678_222050_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37899.1|222085_222244_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE37900.1|222317_225719_+|tail	tail protein	tail	J7KDT4	Streptococcus_phage	58.8	9.5e-93
SQE37901.1|225718_226426_+	phage protein	NA	A0A1B1P761	Bacillus_phage	35.2	1.3e-28
SQE37902.1|226422_228471_+	Phage endopeptidase	NA	Q938K1	Temperate_phage	44.0	2.2e-121
SQE37903.1|228470_229493_+	phage hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	87.0	2.5e-158
SQE37904.1|229503_231519_+	Phage infection protein	NA	Q938J9	Temperate_phage	75.0	3.4e-183
SQE37905.1|231530_231962_+	phage protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
SQE37906.1|231964_232582_+	phage protein	NA	Q938J7	Temperate_phage	90.2	2.8e-80
SQE37907.1|232591_233047_+|holin	holin	holin	A0A0M4R3G6	Streptococcus_phage	80.1	2.6e-62
SQE37908.1|233048_233162_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	91.4	2.6e-08
SQE37909.1|233158_234364_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	84.5	3.1e-208
SQE37910.1|234479_235652_-	DNA/RNA non-specific endonuclease family protein	NA	A7J2B8	Streptococcus_phage	49.5	1.4e-75
SQE37911.1|235890_236073_+	phage protein	NA	A3F673	Streptococcus_phage	80.0	1.1e-19
236070:236087	attR	ATAAAAATAGCCCTCAGC	NA	NA	NA	NA
>prophage 4
LS483298	Streptococcus pyogenes strain NCTC8225 genome assembly, chromosome: 1	1906873	449019	509236	1906873	terminase,portal,tail,tRNA,integrase,holin	Streptococcus_phage(80.77%)	72	461661:461677	492388:492404
SQE38105.1|449019_450297_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	52.0	4.7e-93
SQE38106.1|450688_451048_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQE38107.1|451161_452073_-	PTS system mannose-specific transporter subunit IID	NA	NA	NA	NA	NA
SQE38108.1|452089_452899_-	PTS system mannose-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQE38109.1|452987_453980_-	PTS system mannose-specific transporter subunit IIAB	NA	NA	NA	NA	NA
SQE38110.1|454331_455144_-	HAD superfamily hydrolase	NA	NA	NA	NA	NA
SQE38111.1|455408_456869_+	permease family protein	NA	A0A0R6PHV4	Moraxella_phage	29.3	1.9e-37
SQE38112.1|457022_457484_+	P-loop hydrolase	NA	NA	NA	NA	NA
SQE38113.1|457458_457983_+	acetyltransferase family protein	NA	NA	NA	NA	NA
SQE38114.1|457991_459275_+	biofilm regulatory protein A	NA	NA	NA	NA	NA
SQE38115.1|459385_459742_-	chemotaxis protein	NA	NA	NA	NA	NA
SQE38116.1|459738_460158_-	protein hit	NA	NA	NA	NA	NA
SQE38117.1|460229_460955_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.0	3.9e-20
SQE38118.1|460957_461992_+	bacterial ABC transporter EcsB family protein	NA	NA	NA	NA	NA
461661:461677	attL	GACTAATGCTATTAAGC	NA	NA	NA	NA
SQE38119.1|462055_462847_+	phosphotransferase	NA	NA	NA	NA	NA
SQE38120.1|462846_463482_+|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQE38121.1|464033_464759_-|integrase	integrase	integrase	A7J266	Streptococcus_phage	94.2	5.1e-113
SQE38122.1|464879_465737_-	Site-specific DNA methylase	NA	A0A2H4UUI2	Bodo_saltans_virus	29.3	9.9e-15
SQE38123.1|465793_467497_-	prophage Lp2 protein 4	NA	NA	NA	NA	NA
SQE38124.1|467621_468008_-	peptidase	NA	Q7Y4M1	Streptococcus_phage	58.4	1.3e-38
SQE38125.1|468011_468359_-	Cro/CI family phage transcriptional regulator	NA	A0A126GGQ7	Streptococcus_phage	73.5	1.5e-41
SQE38126.1|468651_468861_+	phage protein	NA	M1Q1B4	Streptococcus_phage	53.6	7.7e-14
SQE38127.1|468919_469195_+	phage protein	NA	A7J272	Streptococcus_phage	95.6	1.7e-45
SQE38128.1|469191_469362_+	phage protein	NA	A7J273	Streptococcus_phage	89.3	2.0e-20
SQE38129.1|469354_469561_+	phage protein	NA	NA	NA	NA	NA
SQE38130.1|469557_469941_+	phage protein	NA	A7J274	Streptococcus_phage	100.0	7.2e-66
SQE38131.1|469937_470090_+	phage protein	NA	A7J275	Streptococcus_phage	100.0	4.4e-19
SQE38132.1|470086_470290_+	phage protein	NA	A7J276	Streptococcus_phage	100.0	9.4e-33
SQE38133.1|470377_470677_+	phage protein	NA	A7J277	Streptococcus_phage	92.9	1.0e-38
SQE38134.1|470676_471834_+	phage protein	NA	A7J278	Streptococcus_phage	99.7	1.7e-219
SQE38135.1|471847_472411_+	phage protein	NA	D2J040	Enterococcus_phage	58.5	1.9e-51
SQE38136.1|472453_474385_+	phage DNA polymerase	NA	A7J280	Streptococcus_phage	87.8	0.0e+00
SQE38137.1|474389_476774_+	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	97.6	8.8e-287
SQE38138.1|477140_477416_+	phage protein	NA	A7J283	Streptococcus_phage	96.7	8.6e-45
SQE38139.1|477412_478735_+	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.7	1.3e-252
SQE38140.1|478735_478897_+	phage protein	NA	A7J285	Streptococcus_phage	94.3	1.2e-22
SQE38141.1|478899_479166_+	phage protein	NA	A7J287	Streptococcus_phage	60.0	7.3e-17
SQE38142.1|479162_479306_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38143.1|479298_479712_+	phage protein	NA	A7J289	Streptococcus_phage	64.2	5.8e-45
SQE38144.1|479807_480260_+|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	93.3	1.0e-71
SQE38145.1|480249_481527_+|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	98.1	3.5e-242
SQE38146.1|481541_483074_+|portal	phage portal protein	portal	A7J292	Streptococcus_phage	98.2	4.3e-287
SQE38147.1|483033_484479_+	phage protein	NA	A7J293	Streptococcus_phage	96.7	4.5e-270
SQE38148.1|484581_484698_+	phage membrane protein	NA	A7J294	Streptococcus_phage	97.4	3.0e-07
SQE38149.1|484700_484967_+	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	85.2	1.1e-33
SQE38150.1|485127_485697_+	phage protein	NA	A7J296	Streptococcus_phage	97.4	1.0e-79
SQE38151.1|485709_486597_+	phage protein	NA	A7J297	Streptococcus_phage	100.0	2.1e-161
SQE38152.1|486608_486965_+	phage protein	NA	A7J298	Streptococcus_phage	98.3	2.5e-57
SQE38153.1|486975_487254_+	phage protein	NA	A7J299	Streptococcus_phage	98.9	4.2e-47
SQE38154.1|487250_487595_+	phage protein	NA	A7J2A0	Streptococcus_phage	96.5	5.1e-55
SQE38155.1|487598_487958_+	phage protein	NA	A7J2A1	Streptococcus_phage	100.0	2.1e-59
SQE38156.1|487969_488569_+|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	100.0	2.2e-93
SQE38157.1|488622_489078_+	phage protein	NA	A7J2A3	Streptococcus_phage	99.3	3.1e-76
SQE38158.1|489152_489386_+	phage protein	NA	A7J2A4	Streptococcus_phage	100.0	4.4e-34
SQE38159.1|489400_493426_+|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	98.9	5.5e-241
492388:492404	attR	GCTTAATAGCATTAGTC	NA	NA	NA	NA
SQE38160.1|493437_494280_+	phage protein	NA	A7J2A6	Streptococcus_phage	98.6	5.5e-159
SQE38161.1|494289_496329_+	phage protein	NA	A7J2A7	Streptococcus_phage	91.1	0.0e+00
SQE38162.1|496328_497450_+	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	71.2	1.6e-126
SQE38163.1|497462_499481_+	Phage infection protein	NA	Q938J9	Temperate_phage	69.4	6.1e-172
SQE38164.1|499492_499924_+	phage protein	NA	Q938J8	Temperate_phage	89.5	1.3e-63
SQE38165.1|499926_500559_+	phage protein	NA	Q938J7	Temperate_phage	51.9	4.3e-47
SQE38166.1|500569_501025_+|holin	holin	holin	A0A0M4R3G6	Streptococcus_phage	81.5	3.0e-63
SQE38167.1|501026_501140_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	82.9	2.2e-07
SQE38168.1|501136_502081_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8VVS3	Streptococcus_phage	57.2	3.3e-120
SQE38169.1|502116_502350_+	prophage LambdaSa2, lysin	NA	A1EAB6	Streptococcus_phage	70.1	1.9e-24
SQE38170.1|502594_503389_+	streptococcal phage DNAse	NA	A7J2B8	Streptococcus_phage	35.6	8.9e-26
SQE38171.1|503455_503635_+	paratox	NA	A3F673	Streptococcus_phage	79.7	5.2e-19
SQE38172.1|503879_504416_+	ribosome maturation factor rimP	NA	NA	NA	NA	NA
SQE38173.1|504602_505748_+	transcription elongation factor	NA	NA	NA	NA	NA
SQE38174.1|505763_506060_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQE38175.1|506052_506355_+	ribosomal protein in infB 5'region	NA	NA	NA	NA	NA
SQE38176.1|506374_509236_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.2	4.5e-19
>prophage 5
LS483298	Streptococcus pyogenes strain NCTC8225 genome assembly, chromosome: 1	1906873	763888	853285	1906873	terminase,portal,tail,tRNA,capsid,holin,transposase	Erysipelothrix_phage(35.42%)	96	NA	NA
SQE38406.1|763888_765022_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE38407.1|765163_765661_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQE38408.1|765660_767331_+	DNA polymerase III subunits gamma and tau	NA	A0A1U9WR94	Streptococcus_virus	41.5	2.3e-47
SQE38409.1|767603_768545_-	biotin-protein ligase	NA	NA	NA	NA	NA
SQE38410.1|768748_771127_+	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
SQE38411.1|771663_772860_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	4.5e-138
SQE38412.1|773033_774293_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQE38413.1|774649_775387_+	protein G-related alpha 2M-binding protein	NA	NA	NA	NA	NA
SQE38414.1|775624_776167_+	acetyltransferase family protein	NA	NA	NA	NA	NA
SQE38415.1|776175_777459_+	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQE38416.1|777474_778335_+	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQE38417.1|778336_779302_+	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQE38418.1|779412_780696_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQE38419.1|780688_781180_+	shikimate kinase	NA	NA	NA	NA	NA
SQE38420.1|781387_782839_+	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQE38421.1|782920_784288_+|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	D0R096	Streptococcus_phage	97.8	4.5e-251
SQE38422.1|784519_785242_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38423.1|785299_786274_+	cytosine-specific methyltransferase	NA	V5URQ5	Oenococcus_phage	60.6	2.9e-103
SQE38424.1|786310_786853_-	Bsp6I restriction endonuclease	NA	NA	NA	NA	NA
SQE38425.1|786856_787078_-	vanUG2	NA	A0A2K5B263	Erysipelothrix_phage	59.2	7.2e-18
SQE38426.1|787089_789669_-	Predicted NTPase (NACHT family)	NA	NA	NA	NA	NA
SQE38427.1|790086_790779_+	RNA polymerase sigma factor SigY	NA	NA	NA	NA	NA
SQE38428.1|790871_791066_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38429.1|791068_791347_+	Uncharacterised protein	NA	S5M5X1	Brevibacillus_phage	58.8	1.4e-07
SQE38430.1|791339_792479_+	phage protein	NA	A0A2K5B2A8	Erysipelothrix_phage	75.1	2.2e-166
SQE38431.1|792480_793029_+	Phage protein	NA	A0A2K5B2A9	Erysipelothrix_phage	83.1	9.9e-85
SQE38432.1|793038_793155_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38433.1|793208_795197_+	prophage LambdaSa04, DNA polymerase	NA	A0A2K5B2B0	Erysipelothrix_phage	69.0	1.8e-272
SQE38434.1|795292_795439_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38435.1|795413_796088_+	Uncharacterized phage-encoded protein	NA	A0A2K5B268	Erysipelothrix_phage	63.0	9.7e-82
SQE38436.1|796080_796458_+	Uncharacterised protein	NA	A0A2K5B270	Erysipelothrix_phage	51.3	1.7e-27
SQE38437.1|796444_798682_+	prophage LambdaSa04, DNA primase	NA	A0A1B0RXC5	Streptococcus_phage	46.6	9.7e-195
SQE38438.1|798805_799087_+	Putative nuclease p44	NA	A0A1B0RXC4	Streptococcus_phage	56.7	2.6e-20
SQE38439.1|799067_800411_+	phage-related DNA helicase	NA	A0A2K5B273	Erysipelothrix_phage	73.9	3.1e-172
SQE38440.1|800459_800930_+	Uncharacterised protein	NA	A0A2K5B275	Erysipelothrix_phage	40.8	1.3e-19
SQE38441.1|801529_802108_+|terminase	Phage terminase, small subunit	terminase	A0A2K5B277	Erysipelothrix_phage	46.4	3.8e-42
SQE38442.1|802113_802896_+	methionine adenosyltransferase	NA	NA	NA	NA	NA
SQE38443.1|802920_803526_+	putative DNA methylase	NA	A0A0E3JS81	Verrucomicrobia_phage	45.9	9.4e-44
SQE38444.1|803675_804890_-|transposase	IS1191 transposase	transposase	A0A218MNI5	uncultured_virus	52.2	4.6e-50
SQE38445.1|805036_805654_+	Modification methylase HpaI	NA	A0A1B0RXJ0	Streptococcus_phage	59.9	5.0e-69
SQE38446.1|805634_807227_+	DNA (cytosine-5-)-methyltransferase	NA	A0A1P8DJM9	Virus_Rctr41k	37.6	1.7e-31
SQE38447.1|807301_807940_+	Uncharacterised protein	NA	A0A2K5B280	Erysipelothrix_phage	49.8	2.1e-49
SQE38448.1|807941_808172_+	Uncharacterised protein	NA	A0A2K5B281	Erysipelothrix_phage	62.9	1.5e-18
SQE38449.1|808161_808335_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38450.1|808441_808687_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38451.1|808688_808967_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38452.1|809034_810648_+|terminase	putative phage terminase, large subunit	terminase	A0A2K5B285	Erysipelothrix_phage	81.8	4.6e-263
SQE38453.1|810773_810983_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38454.1|811049_812378_+|portal	prophage LambdaSa04, HK97 family portal protein	portal	A0A2K5B287	Erysipelothrix_phage	71.4	3.1e-172
SQE38455.1|812328_813036_+	edopeptidase clp	NA	Q6DMU1	Streptococcus_phage	63.5	1.1e-64
SQE38456.1|813041_814223_+|capsid	phage major capsid protein	capsid	M1Q1R5	Streptococcus_phage	49.9	8.7e-102
SQE38457.1|814245_814524_+	uncharacterised phage protein	NA	A0A1B0RXE3	Streptococcus_phage	43.5	2.2e-11
SQE38458.1|814523_814856_+	phage protein	NA	NA	NA	NA	NA
SQE38459.1|814852_815233_+	prophage pi2 protein 37	NA	Q6DMT7	Streptococcus_phage	38.5	2.8e-14
SQE38460.1|815225_815558_+	prophage pi2 protein 38	NA	M1Q1Z4	Streptococcus_phage	45.5	1.8e-20
SQE38461.1|815547_816138_+|tail	phage major tail protein	tail	A0A0U4JWV5	Exiguobacterium_phage	49.5	2.5e-41
SQE38462.1|816149_816515_+	Uncharacterised protein	NA	A0A2H4JAG8	uncultured_Caudovirales_phage	34.2	3.8e-08
SQE38463.1|816511_816676_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38464.1|817039_818383_+	putative MATE efflux family protein	NA	NA	NA	NA	NA
SQE38465.1|818464_821290_+|tail	tail tape measure protein	tail	Q6DMT2	Streptococcus_phage	39.0	1.7e-58
SQE38466.1|821292_821964_+	Phage-related protein	NA	A0A2K9V3E8	Faecalibacterium_phage	29.7	7.5e-18
SQE38467.1|821964_824790_+	putative membrane metallo-endo-peptidase	NA	H7BV46	unidentified_phage	30.4	1.5e-115
SQE38468.1|824801_824984_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38469.1|824964_825240_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38470.1|825251_825548_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38471.1|825547_825763_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38472.1|825778_826108_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38473.1|826381_826906_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38474.1|826907_827318_+|holin	holin	holin	A0A2K5B2A2	Erysipelothrix_phage	67.6	5.2e-46
SQE38475.1|827310_828297_+	prophage LambdaSa2, lysin	NA	A0A2K9V338	Faecalibacterium_phage	54.0	3.5e-48
SQE38476.1|828472_828883_+	Zinc-finger protein	NA	A0A1B0RXC6	Streptococcus_phage	41.4	6.4e-20
SQE38477.1|828869_829082_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38478.1|829143_830709_+	site-specific recombinase	NA	A0A2K5B2B2	Erysipelothrix_phage	49.4	2.6e-138
SQE38479.1|830705_831116_+	recombinase	NA	A0A2K5B2B3	Erysipelothrix_phage	39.0	2.2e-20
SQE38480.1|831133_832705_+	site-specific recombinase	NA	A0A2K5B2B4	Erysipelothrix_phage	61.9	9.3e-152
SQE38481.1|832879_834094_-|transposase	IS1191 transposase	transposase	A0A218MNI5	uncultured_virus	52.2	4.6e-50
SQE38482.1|834345_835338_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SQE38483.1|835498_837253_+	ABC transporter ATP-binding protein/permease	NA	F2Y352	Organic_Lake_phycodnavirus	35.1	4.0e-26
SQE38484.1|837236_838958_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.3	1.4e-28
SQE38485.1|838968_839550_+	major facilitator superfamily permease	NA	NA	NA	NA	NA
SQE38486.1|839549_840239_+	cobalt transport protein	NA	NA	NA	NA	NA
SQE38487.1|840232_841597_+	cobalt ABC transporter ATPase component, CbiO	NA	A0A1V0SE00	Indivirus	34.1	1.4e-18
SQE38488.1|842426_842537_+	phosphorylase Pnp/Udp family protein	NA	NA	NA	NA	NA
SQE38489.1|842695_843094_+	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	74.1	1.1e-61
SQE38490.1|843178_843580_+	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQE38491.1|843684_845169_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQE38492.1|845542_846763_+	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQE38493.1|846882_847248_-	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQE38494.1|847362_848094_+	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQE38495.1|848110_848434_-|transposase	transposase	transposase	A0A1P8CWQ3	Bacillus_phage	46.2	3.3e-19
SQE38496.1|848479_848833_-	DNA-binding protein	NA	A0A0C5AEB1	Paenibacillus_phage	30.8	1.6e-06
SQE38497.1|848865_849159_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE38498.1|849236_850547_-	membrane protein	NA	NA	NA	NA	NA
SQE38499.1|850770_851643_+	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQE38500.1|851942_852749_-|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	50.0	1.1e-63
SQE38501.1|852769_853285_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 6
LS483298	Streptococcus pyogenes strain NCTC8225 genome assembly, chromosome: 1	1906873	875083	935759	1906873	head,terminase,portal,tail,integrase,holin,transposase	Streptococcus_phage(41.94%)	85	886035:886094	934629:934724
SQE38523.1|875083_875671_-|transposase	truncated transposase	transposase	Q9MBM9	Staphylococcus_prophage	39.1	3.5e-27
SQE38524.1|876044_876881_-	maltose transport system permease	NA	NA	NA	NA	NA
SQE38525.1|876880_878242_-	maltose/maltodextrin ABC transport system permease	NA	NA	NA	NA	NA
SQE38526.1|878515_879763_-	maltose/maltodextrin-binding protein	NA	NA	NA	NA	NA
SQE38527.1|880006_881026_+	LacI family transcription regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
SQE38528.1|881140_882634_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
SQE38529.1|882668_884933_+	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
SQE38530.1|885189_885810_-	phage protein	NA	NA	NA	NA	NA
886035:886094	attL	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGA	NA	NA	NA	NA
SQE38531.1|886172_887261_-|integrase	integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	99.4	4.2e-204
SQE38532.1|887510_888320_-	phage protein	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
SQE38533.1|888332_889070_-	phage transcriptional repressor	NA	A0A1S5S8T5	Streptococcus_phage	63.9	2.7e-77
SQE38534.1|889229_889376_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38535.1|889372_889855_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38536.1|889928_890156_+	phage protein	NA	A0A141E1R7	Streptococcus_phage	57.3	2.9e-14
SQE38537.1|890263_890773_-	phage protein	NA	NA	NA	NA	NA
SQE38538.1|890827_891073_+	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
SQE38539.1|891031_891241_-	phage protein	NA	NA	NA	NA	NA
SQE38540.1|891296_891428_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38541.1|891413_891632_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38542.1|892038_892350_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.6	1.4e-43
SQE38543.1|892351_892486_+	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	95.5	9.6e-18
SQE38544.1|892616_892796_+	Uncharacterised protein	NA	A0A1X9I5M8	Streptococcus_phage	65.5	1.2e-12
SQE38545.1|892968_893241_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38546.1|893230_893611_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38547.1|893666_894110_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38548.1|894225_895029_+	DNA replication protein DnaC	NA	A0A2P0VI76	Streptococcus_phage	53.8	2.4e-63
SQE38549.1|895015_895798_+	DNA replication protein DnaC	NA	A0A097PAQ0	Streptococcus_pyogenes_phage	98.1	2.7e-144
SQE38550.1|895788_895926_+	phage protein	NA	J7KBQ4	Streptococcus_phage	78.4	2.7e-07
SQE38551.1|895936_896293_+	phage protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	99.2	3.0e-50
SQE38552.1|896273_896528_+	phage protein	NA	Q938N0	Temperate_phage	98.8	3.7e-42
SQE38553.1|896549_897032_+	phage protein	NA	Q938M9	Temperate_phage	98.8	1.6e-49
SQE38554.1|897032_897707_+	Single-stranded DNA-binding protein	NA	Q938M8	Temperate_phage	96.4	1.3e-102
SQE38555.1|897699_898119_+	single-stranded DNA-binding protein ssb	NA	Q938M7	Temperate_phage	96.4	1.5e-69
SQE38556.1|898327_898768_+	phage protein	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.9	4.5e-80
SQE38557.1|898764_899121_+	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	96.6	1.4e-58
SQE38558.1|899117_899354_+	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	83.1	2.9e-33
SQE38559.1|899347_899632_+	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	98.9	2.0e-49
SQE38560.1|899628_899898_+	phage protein	NA	Q938M2	Temperate_phage	87.6	2.5e-41
SQE38561.1|900023_900383_+	phage protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	88.5	5.4e-39
SQE38562.1|900386_900869_+	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
SQE38563.1|901059_901461_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38564.1|901460_902096_+	phage protein	NA	L0P368	Streptococcus_phage	67.9	5.5e-87
SQE38565.1|902364_902802_+	phage protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	100.0	3.6e-77
SQE38566.1|902965_904180_+|transposase	IS1191 transposase	transposase	A0A218MNI5	uncultured_virus	52.2	4.6e-50
SQE38567.1|905206_906121_+	phage protein	NA	NA	NA	NA	NA
SQE38568.1|906139_906601_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38569.1|906739_907117_-	phage protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
SQE38570.1|907168_907354_-	phage protein	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
SQE38571.1|907452_907884_+|terminase	terminase	terminase	A0A1S5SCD2	Streptococcus_phage	69.9	2.2e-47
SQE38572.1|907861_909169_+|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.0	8.5e-183
SQE38573.1|909180_909864_+|portal	phage portal protein, SPP1 family	portal	A0A286QRL1	Streptococcus_phage	54.6	2.6e-58
SQE38574.1|910042_911257_-|transposase	IS1191 transposase	transposase	A0A218MNI5	uncultured_virus	52.2	4.6e-50
SQE38575.1|911401_912166_+|portal	phage portal protein, SPP1 family	portal	O80165	Streptococcus_virus	56.6	6.9e-68
SQE38576.1|912146_913772_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	U6E9F1	Streptococcus_phage	43.8	1.1e-46
SQE38577.1|913762_913942_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38578.1|914001_914271_+	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	84.1	2.3e-34
SQE38579.1|914366_914546_+	Uncharacterised protein	NA	M1NRK8	Streptococcus_phage	79.7	2.6e-18
SQE38580.1|914660_914909_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38581.1|914910_915654_+	antirepressor	NA	M1PKL6	Streptococcus_phage	56.9	5.3e-73
SQE38582.1|915765_916299_+	phage protein	NA	A0A141E0S7	Streptococcus_phage	83.9	1.4e-14
SQE38583.1|916308_916689_+	structural protein	NA	A0A0K2CNR0	Brevibacillus_phage	37.9	5.2e-08
SQE38584.1|916688_917765_+|head	phage head protein	head	A0A2H4J022	uncultured_Caudovirales_phage	56.0	5.5e-103
SQE38585.1|917774_918017_+	phage protein	NA	NA	NA	NA	NA
SQE38586.1|918030_918384_+	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
SQE38587.1|918380_918689_+	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
SQE38588.1|918678_919035_+	phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	5.7e-17
SQE38589.1|919031_919421_+	phage protein	NA	Q38611	Lactococcus_phage	68.2	3.5e-44
SQE38590.1|919430_920078_+|tail	phage major tail protein	tail	D7RWD5	Brochothrix_phage	52.0	1.4e-40
SQE38591.1|920130_920490_+	phage protein	NA	D7RWD6	Brochothrix_phage	44.5	4.3e-20
SQE38592.1|920531_920861_+	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	41.5	2.0e-11
SQE38593.1|920875_924142_+	tape measure domain protein	NA	U6E979	Streptococcus_phage	30.4	1.6e-04
SQE38594.1|924173_924953_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	55.5	1.9e-68
SQE38595.1|924949_927001_+	phage protein	NA	A3F656	Streptococcus_phage	84.6	0.0e+00
SQE38596.1|926997_928005_+	phage hyaluronidase	NA	A7J2A8	Streptococcus_phage	71.7	1.4e-137
SQE38597.1|928017_929928_+	phage infection protein	NA	Q938J9	Temperate_phage	71.3	6.0e-121
SQE38598.1|929941_930103_+	phage protein	NA	NA	NA	NA	NA
SQE38599.1|930105_930723_+	phage protein	NA	Q938J7	Temperate_phage	87.3	9.5e-76
SQE38600.1|930732_931008_+|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQE38601.1|931004_931232_+|holin	prophage LambdaSa03, holin	holin	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQE38602.1|931240_931351_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	94.4	3.0e-09
SQE38603.1|931347_932553_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	84.5	2.7e-207
SQE38604.1|932622_933057_-	phage membrane protein	NA	NA	NA	NA	NA
SQE38605.1|933327_934128_-	streptodornase	NA	NA	NA	NA	NA
SQE38606.1|934365_934554_+	paratox	NA	A3F673	Streptococcus_phage	83.1	1.3e-20
SQE38607.1|935144_935759_+	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
934629:934724	attR	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATTGATGGAGCCGGTGGGAGT	NA	NA	NA	NA
>prophage 7
LS483298	Streptococcus pyogenes strain NCTC8225 genome assembly, chromosome: 1	1906873	1185619	1240904	1906873	protease,tRNA,head,transposase	Bacillus_phage(28.57%)	53	NA	NA
SQE38856.1|1185619_1186519_-|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQE38857.1|1186652_1186829_+	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQE38858.1|1186946_1187855_-	exfoliative toxin	NA	NA	NA	NA	NA
SQE38859.1|1188092_1188512_-	glutathione S-transferase	NA	NA	NA	NA	NA
SQE38860.1|1188822_1189809_-	Rhodanese domain protein UPF0176, Firmicutes subgroup	NA	NA	NA	NA	NA
SQE38861.1|1190008_1190311_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38862.1|1190857_1192063_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQE38863.1|1192452_1192683_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQE38864.1|1192746_1193769_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQE38865.1|1193891_1196315_-	topoisomerase IV subunit	NA	G3M9Z5	Bacillus_virus	33.3	9.1e-98
SQE38866.1|1196441_1198391_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	41.7	2.8e-121
SQE38867.1|1198525_1199167_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQE38868.1|1199224_1200493_-	dihydroorotase	NA	NA	NA	NA	NA
SQE38869.1|1200624_1201278_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	40.1	2.3e-40
SQE38870.1|1201410_1202061_-	amino-acid ABC transporter permease yckA	NA	NA	NA	NA	NA
SQE38871.1|1202089_1202953_-	cystine-binding protein	NA	NA	NA	NA	NA
SQE38872.1|1203070_1204525_-	amidase	NA	NA	NA	NA	NA
SQE38873.1|1204721_1205351_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQE38874.1|1205408_1206101_-	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQE38875.1|1206377_1206914_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE38876.1|1207135_1208041_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQE38877.1|1208120_1208354_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
SQE38878.1|1208305_1208908_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
SQE38879.1|1208900_1209614_-	Purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQE38880.1|1210276_1211086_-	purine nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	41.9	8.7e-53
SQE38881.1|1211069_1211510_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	54.5	4.4e-35
SQE38882.1|1211528_1212740_-	phosphopentomutase	NA	NA	NA	NA	NA
SQE38883.1|1212816_1213500_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQE38884.1|1213877_1215977_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.2	5.6e-120
SQE38885.1|1216034_1216778_-	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQE38886.1|1216925_1217525_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQE38887.1|1217534_1218764_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
SQE38888.1|1218893_1219064_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQE38889.1|1219083_1219581_-	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQE38890.1|1219660_1220500_-	thymidylate synthase	NA	U5J9N5	Bacillus_phage	52.9	2.4e-82
SQE38891.1|1220708_1221884_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQE38892.1|1221870_1223148_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQE38893.1|1223377_1224367_-	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQE38894.1|1224353_1225367_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQE38895.1|1225359_1226304_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQE38896.1|1226285_1227164_-	mevalonate kinase	NA	NA	NA	NA	NA
SQE38897.1|1227457_1228690_-	two component system histidine kinase	NA	NA	NA	NA	NA
SQE38898.1|1228698_1229367_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQE38899.1|1229369_1230020_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQE38900.1|1230240_1232253_+	5'-nucleotidase	NA	NA	NA	NA	NA
SQE38901.1|1232333_1232744_-	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQE38902.1|1233635_1235513_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.1	1.3e-62
SQE38903.1|1235509_1236718_-|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	6.9e-38
SQE38904.1|1236842_1237691_-	degV family protein	NA	NA	NA	NA	NA
SQE38905.1|1237690_1238071_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE38906.1|1238298_1238475_-	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQE38907.1|1238978_1240004_+|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQE38908.1|1240685_1240904_+|transposase	degenerate transposase	transposase	A0A1B1P773	Bacillus_phage	55.9	2.7e-09
>prophage 8
LS483298	Streptococcus pyogenes strain NCTC8225 genome assembly, chromosome: 1	1906873	1277158	1287761	1906873		Streptococcus_phage(57.14%)	10	NA	NA
SQE38943.1|1277158_1278301_-	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.0	4.1e-24
SQE38944.1|1278535_1278976_+	membrane protein	NA	NA	NA	NA	NA
SQE38945.1|1279005_1279296_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQE38946.1|1279329_1280274_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQE38947.1|1280361_1281714_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.0	4.5e-30
SQE38948.1|1281934_1282276_-	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
SQE38949.1|1282336_1283503_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQE38950.1|1283596_1284283_-	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQE38951.1|1284279_1285443_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQE38952.1|1285550_1287761_+	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
>prophage 9
LS483298	Streptococcus pyogenes strain NCTC8225 genome assembly, chromosome: 1	1906873	1481320	1524479	1906873	bacteriocin,tRNA,protease,transposase	Tupanvirus(11.11%)	50	NA	NA
SQE39133.1|1481320_1483264_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.7	1.0e-120
SQE39134.1|1483685_1485020_-	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
SQE39135.1|1485021_1486020_-	glycosyltransferase	NA	NA	NA	NA	NA
SQE39136.1|1486150_1487152_-	Catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
SQE39137.1|1487325_1488411_+	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQE39138.1|1488459_1489125_+	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA	NA
SQE39139.1|1489135_1489513_+	bleomycin resistance protein	NA	NA	NA	NA	NA
SQE39140.1|1489657_1490584_+	glucosyl transferase family 2	NA	V5USA4	Oenococcus_phage	47.5	9.9e-77
SQE39141.1|1490794_1491478_+	membrane protein	NA	NA	NA	NA	NA
SQE39142.1|1491477_1492404_+	membrane protein	NA	NA	NA	NA	NA
SQE39143.1|1492453_1493101_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQE39144.1|1493217_1493928_-	glutamine cyclotransferase	NA	NA	NA	NA	NA
SQE39145.1|1493942_1494410_-	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	56.3	4.9e-40
SQE39146.1|1494412_1496746_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.6	2.3e-90
SQE39147.1|1496839_1497076_-	preprotein translocase subunit	NA	NA	NA	NA	NA
SQE39148.1|1497264_1498458_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE39149.1|1498579_1500082_-	ATPase	NA	A0A248XCZ8	Klebsiella_phage	41.3	5.7e-74
SQE39150.1|1500271_1500865_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQE39151.1|1500861_1501689_-	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.4	1.9e-15
SQE39152.1|1501867_1502734_-	transcriptional regulator	NA	NA	NA	NA	NA
SQE39153.1|1503804_1504074_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE39154.1|1504421_1504868_-	histidine kinase	NA	NA	NA	NA	NA
SQE39155.1|1504912_1505980_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE39156.1|1506224_1506635_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE39157.1|1506813_1507110_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE39158.1|1507439_1507649_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE39159.1|1507649_1507850_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQE39160.1|1507862_1508090_-	BlpM	NA	NA	NA	NA	NA
SQE39161.1|1508408_1508831_+|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
SQE39162.1|1508827_1508977_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQE39163.1|1509314_1509497_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQE39164.1|1509609_1509744_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQE39165.1|1510141_1510396_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE39166.1|1510702_1511179_-	phosphohydrolase	NA	NA	NA	NA	NA
SQE39167.1|1511199_1512096_-	GTP-binding protein Era	NA	NA	NA	NA	NA
SQE39168.1|1512215_1512623_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQE39169.1|1512603_1513101_-|protease	metalloprotease	protease	NA	NA	NA	NA
SQE39170.1|1513259_1513835_-	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQE39171.1|1513880_1514933_-	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQE39172.1|1515091_1516864_-	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQE39173.1|1517178_1518360_-	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	39.6	2.1e-15
SQE39174.1|1518515_1518731_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQE39175.1|1518727_1519237_-	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQE39176.1|1519309_1520167_-	s1 RNA binding domain	NA	NA	NA	NA	NA
SQE39177.1|1520275_1520833_-	ribosome recycling factor	NA	NA	NA	NA	NA
SQE39178.1|1520861_1521590_-	uridylate kinase	NA	NA	NA	NA	NA
SQE39179.1|1521911_1522601_-	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQE39180.1|1522706_1523132_-	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQE39181.1|1523236_1523341_-	exfoliative toxin	NA	NA	NA	NA	NA
SQE39182.1|1523345_1524479_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 10
LS483298	Streptococcus pyogenes strain NCTC8225 genome assembly, chromosome: 1	1906873	1558624	1564656	1906873		Streptococcus_phage(100.0%)	9	NA	NA
SQE39212.1|1558624_1559452_+	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.5	8.4e-128
SQE39213.1|1559525_1559882_-	arsenate reductase	NA	M1PLC0	Streptococcus_phage	66.7	4.8e-40
SQE39214.1|1560179_1560809_+	copper homeostasis protein	NA	NA	NA	NA	NA
SQE39215.1|1560855_1561248_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQE39216.1|1561274_1562138_-	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
SQE39217.1|1562142_1562466_-	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQE39218.1|1562869_1563109_-	Tpl protein	NA	NA	NA	NA	NA
SQE39219.1|1563127_1564003_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
SQE39220.1|1564020_1564656_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	1.2e-65
>prophage 11
LS483298	Streptococcus pyogenes strain NCTC8225 genome assembly, chromosome: 1	1906873	1830940	1846660	1906873	tRNA	Streptococcus_phage(61.54%)	22	NA	NA
SQE39454.1|1830940_1831732_-	transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	48.5	7.5e-09
SQE39455.1|1831823_1832057_+	transcriptional regulator	NA	NA	NA	NA	NA
SQE39456.1|1832111_1832519_+	phage protein	NA	A0A1X9I5V7	Streptococcus_phage	68.7	8.5e-49
SQE39457.1|1832532_1833150_+	pRha family phage regulatory protein	NA	A0A159B6D5	Gordonia_phage	38.8	2.2e-11
SQE39458.1|1833383_1833725_+	phage protein	NA	NA	NA	NA	NA
SQE39459.1|1833711_1833933_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE39460.1|1833935_1834127_+	phage protein	NA	NA	NA	NA	NA
SQE39461.1|1834138_1834468_+	phage protein	NA	NA	NA	NA	NA
SQE39462.1|1834470_1834743_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
SQE39463.1|1834743_1835601_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	74.8	4.5e-124
SQE39464.1|1835569_1837258_+	phage/plasmid primase, P4 family, C-terminal domain protein	NA	A0A1X9I717	Streptococcus_phage	82.1	5.5e-259
SQE39465.1|1837544_1837718_+	Uncharacterised protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
SQE39466.1|1837723_1837897_+	phage protein	NA	NA	NA	NA	NA
SQE39467.1|1837898_1838408_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.1e-29
SQE39468.1|1838481_1838970_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
SQE39469.1|1839369_1839732_+	phage protein	NA	A0A2H4JFS1	uncultured_Caudovirales_phage	29.9	1.3e-05
SQE39470.1|1839706_1840090_+	phage protein	NA	Q938L8	Temperate_phage	41.7	3.7e-14
SQE39471.1|1840290_1840953_+	secreted phage protein	NA	NA	NA	NA	NA
SQE39472.1|1841349_1843905_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	23.4	3.0e-43
SQE39473.1|1843891_1844098_-	cytoplasmic protein	NA	NA	NA	NA	NA
SQE39474.1|1844240_1844678_-	arginine repressor	NA	NA	NA	NA	NA
SQE39475.1|1844968_1846660_+|tRNA	arginyl-tRNA synthetase	tRNA	A0A2I2L3K1	Orpheovirus	32.2	1.9e-73
