assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900474535.1_40853_C01	LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	1	630523-630609	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGCATAAAAGCCTCTAATCGCTAAAG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|169aa|down_4|LS483300.1_634323_634830_+,NA|239aa|down_5|LS483300.1_634991_635708_+	NA|313aa|up_9|LS483300.1_619982_620921_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|LS483300.1_621130_621667_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|LS483300.1_621835_622312_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|LS483300.1_622351_623647_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|169aa|up_5|LS483300.1_623689_624196_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|LS483300.1_624694_625705_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|139aa|up_3|LS483300.1_625979_626396_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_2|LS483300.1_626392_628054_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|439aa|up_1|LS483300.1_628144_629461_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|212aa|up_0|LS483300.1_629758_630394_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|LS483300.1_630641_631529_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|LS483300.1_631679_632630_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|LS483300.1_632684_633404_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|LS483300.1_633387_634188_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|LS483300.1_634323_634830_+	NA	NA|239aa|down_5|LS483300.1_634991_635708_+	NA	NA|263aa|down_6|LS483300.1_635876_636665_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|LS483300.1_636917_637292_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|LS483300.1_638239_639169_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|LS483300.1_639363_639588_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_900474535.1_40853_C01	LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	2	844272-844357	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATTTCGAAAAGAAATTCTACAAACAA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_6|LS483300.1_839017_839131_+,NA	NA|107aa|up_9|LS483300.1_837595_837916_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_8|LS483300.1_838059_838416_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_7|LS483300.1_838573_838954_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_6|LS483300.1_839017_839131_+	NA	NA|293aa|up_5|LS483300.1_839132_840011_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|up_4|LS483300.1_840487_840877_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|up_3|LS483300.1_840869_841166_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|up_2|LS483300.1_841415_842441_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|up_1|LS483300.1_842433_843129_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|up_0|LS483300.1_843146_843968_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_0|LS483300.1_844616_844811_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_1|LS483300.1_845044_845896_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_2|LS483300.1_846223_846985_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_3|LS483300.1_847082_848390_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_4|LS483300.1_848504_849746_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|155aa|down_5|LS483300.1_849735_850200_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|466aa|down_6|LS483300.1_850350_851748_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|187aa|down_7|LS483300.1_851815_852376_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|78aa|down_8|LS483300.1_853037_853271_+	COG5546, COG5546, Small integral membrane protein [Function unknown]	NA|252aa|down_9|LS483300.1_853282_854038_+	pfam05257, CHAP, CHAP domain
GCA_900474535.1_40853_C01	LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	3	915837-915981	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCATTGCTTGTAGAATCTCTTTTCGAAATTCT	39	1	8	915944-915962|915944-915962|915944-915962|915944-915962|915944-915962|915944-915962|915944-915962|915944-915962	LS483300.1_1113675-1113657|LS483300.1_37826-37844|LS483300.1_793959-793977|LS483300.1_1013301-1013319|LS483300.1_1322763-1322781|LS483300.1_1577808-1577826|LS483300.1_1699277-1699259|LS483300.1_1916858-1916876	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|192aa|up_9|LS483300.1_902278_902854_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_8|LS483300.1_902858_903383_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_7|LS483300.1_903398_903974_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|up_6|LS483300.1_904133_907610_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|up_5|LS483300.1_907610_911264_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|up_4|LS483300.1_911429_912332_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|up_3|LS483300.1_912657_913047_+	PRK13673, PRK13673, hypothetical protein; Provisional	NA|439aa|up_2|LS483300.1_913217_914534_-	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional	NA|275aa|up_1|LS483300.1_914585_915410_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_0|LS483300.1_915523_915832_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|229aa|down_0|LS483300.1_916469_917156_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|391aa|down_1|LS483300.1_917112_918285_+	cd01840, SGNH_hydrolase_yrhL_like, yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases	NA|870aa|down_2|LS483300.1_918487_921097_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|290aa|down_3|LS483300.1_921155_922025_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|172aa|down_4|LS483300.1_922155_922671_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|145aa|down_5|LS483300.1_922981_923416_+	pfam03642, MAP, MAP domain	NA|62aa|down_6|LS483300.1_923672_923858_-	pfam11151, DUF2929, Protein of unknown function (DUF2929)	NA|314aa|down_7|LS483300.1_924152_925094_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|415aa|down_8|LS483300.1_925105_926350_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II	NA|87aa|down_9|LS483300.1_926403_926664_-	pfam01610, DDE_Tnp_ISL3, Transposase
GCA_900474535.1_40853_C01	LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	4	1197738-1197823	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	7	1197768-1197793|1197768-1197793|1197768-1197793|1197768-1197793|1197768-1197793|1197768-1197793|1197768-1197793	LS483300.1_24182-24157|LS483300.1_755281-755306|LS483300.1_1248150-1248125|LS483300.1_2272981-2273006|LS483300.1_755225-755250|LS483300.1_793747-793722|LS483300.1_2079812-2079837	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|78aa|up_9|LS483300.1_1187173_1187407_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|up_8|LS483300.1_1187522_1188254_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|up_7|LS483300.1_1188400_1191967_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|up_6|LS483300.1_1191966_1193217_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|up_5|LS483300.1_1193203_1193536_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|up_4|LS483300.1_1193561_1194929_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|up_3|LS483300.1_1195270_1195546_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|up_2|LS483300.1_1195733_1196237_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|up_1|LS483300.1_1196236_1196974_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|up_0|LS483300.1_1197076_1197427_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|869aa|down_0|LS483300.1_1197896_1200503_-	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|295aa|down_1|LS483300.1_1200903_1201788_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|256aa|down_2|LS483300.1_1201771_1202539_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|389aa|down_3|LS483300.1_1202647_1203814_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|303aa|down_4|LS483300.1_1203835_1204744_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|291aa|down_5|LS483300.1_1205065_1205938_+	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|692aa|down_6|LS483300.1_1206111_1208187_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|436aa|down_7|LS483300.1_1208342_1209650_+	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|299aa|down_8|LS483300.1_1210068_1210965_+	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC	NA|182aa|down_9|LS483300.1_1210961_1211507_+	PRK05456, PRK05456, ATP-dependent protease subunit HslV
GCA_900474535.1_40853_C01	LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	5	1881289-1881416	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|132aa|up_7|LS483300.1_1873568_1873964_-,NA|51aa|up_6|LS483300.1_1874449_1874602_-,NA	NA|274aa|up_9|LS483300.1_1870715_1871537_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|LS483300.1_1871987_1873373_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|LS483300.1_1873568_1873964_-	NA	NA|51aa|up_6|LS483300.1_1874449_1874602_-	NA	NA|200aa|up_5|LS483300.1_1874626_1875226_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|LS483300.1_1875384_1875855_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_3|LS483300.1_1875859_1876987_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|LS483300.1_1877137_1877866_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|LS483300.1_1877852_1879310_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|LS483300.1_1879568_1880630_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|LS483300.1_1889484_1889931_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|320aa|down_1|LS483300.1_1890027_1890987_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|LS483300.1_1890983_1891439_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|LS483300.1_1891519_1892809_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|LS483300.1_1893101_1894196_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|LS483300.1_1894386_1896123_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|LS483300.1_1896412_1896955_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|LS483300.1_1897257_1898295_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|LS483300.1_1898446_1899424_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|LS483300.1_1899684_1900521_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCA_900474535.1_40853_C01	LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	6	2124305-2124398	5	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CATCCAACTGTGTTCCTCTATCTTACA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|LS483300.1_2119137_2119368_-,NA|352aa|up_0|LS483300.1_2123156_2124212_+,NA	NA|237aa|up_9|LS483300.1_2114745_2115456_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|LS483300.1_2115576_2116020_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|LS483300.1_2116219_2116633_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|LS483300.1_2117090_2118464_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|LS483300.1_2119137_2119368_-	NA	NA|313aa|up_4|LS483300.1_2119398_2120337_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|LS483300.1_2120772_2121438_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|LS483300.1_2121589_2121910_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|LS483300.1_2121911_2122892_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|352aa|up_0|LS483300.1_2123156_2124212_+	NA	NA|286aa|down_0|LS483300.1_2124762_2125620_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_1|LS483300.1_2125687_2126470_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_2|LS483300.1_2126701_2128507_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_3|LS483300.1_2129187_2130726_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_4|LS483300.1_2130760_2132893_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_5|LS483300.1_2132904_2133339_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_6|LS483300.1_2133338_2134445_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|1978aa|down_7|LS483300.1_2134763_2140697_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|452aa|down_8|LS483300.1_2140974_2142330_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_9|LS483300.1_2142356_2143289_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]
