The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483308	Staphylococcus aureus strain NCTC13137 genome assembly, chromosome: 1	2761079	723961	731781	2761079		Hokovirus(16.67%)	10	NA	NA
SQE63372.1|723961_725017_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
SQE63373.1|725016_725703_-	Response regulator SaeR	NA	NA	NA	NA	NA
SQE63374.1|725677_726151_-	DoxX family protein	NA	NA	NA	NA	NA
SQE63375.1|726492_726933_-	lipoprotein	NA	NA	NA	NA	NA
SQE63376.1|727212_727797_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE63377.1|727895_728609_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
SQE63378.1|728612_729032_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
SQE63379.1|729033_729702_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
SQE63380.1|730052_730646_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
SQE63381.1|730629_731781_+	Para-aminobenzoate synthetase component I	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
LS483308	Staphylococcus aureus strain NCTC13137 genome assembly, chromosome: 1	2761079	743751	758149	2761079		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
SQE63390.1|743751_744810_+	histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
SQE63391.1|744683_744965_-	Protein of uncharacterised function (DUF3125)	NA	NA	NA	NA	NA
SQE63392.1|745104_745647_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
SQE63393.1|746326_747244_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
SQE63394.1|747513_749019_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
SQE63395.1|749359_749860_-	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
SQE63396.1|749879_750746_-	Integral membrane domain protein	NA	NA	NA	NA	NA
SQE63397.1|751546_751945_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
SQE63398.1|751907_754013_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
SQE63399.1|754130_755102_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
SQE63400.1|755434_756451_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	77.8	2.2e-138
SQE63401.1|756434_757391_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
SQE63402.1|757387_758149_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 3
LS483308	Staphylococcus aureus strain NCTC13137 genome assembly, chromosome: 1	2761079	999981	1008454	2761079		Synechococcus_phage(33.33%)	9	NA	NA
SQE63628.1|999981_1000464_+	AIR carboxylase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
SQE63629.1|1000450_1001575_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
SQE63630.1|1001578_1002283_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
SQE63631.1|1002282_1002546_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
SQE63632.1|1002547_1003219_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
SQE63633.1|1003211_1005401_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.7	7.9e-141
SQE63634.1|1005379_1006864_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
SQE63635.1|1006856_1007885_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
SQE63636.1|1007887_1008454_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 4
LS483308	Staphylococcus aureus strain NCTC13137 genome assembly, chromosome: 1	2761079	1242526	1298767	2761079	portal,integrase,terminase,tRNA,capsid,holin,tail	Staphylococcus_phage(53.19%)	69	1262684:1262721	1297361:1297398
SQE63850.1|1242526_1244071_+|tRNA	tRNA-i(6)A37 methylthiotransferase	tRNA	NA	NA	NA	NA
SQE63851.1|1244071_1244437_+	membrane protein	NA	NA	NA	NA	NA
SQE63852.1|1244463_1244955_+	Substrate-specific component ThiWthiazole ECF transporter	NA	NA	NA	NA	NA
SQE63853.1|1245257_1247876_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
SQE63854.1|1247888_1249898_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.8	2.8e-60
SQE63855.1|1249912_1250446_+	glycerol uptake operon antiterminator regulatory protein	NA	NA	NA	NA	NA
SQE63856.1|1250920_1251739_+	Glycerol uptake facilitator protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
SQE63857.1|1251867_1253364_+	glycerol kinase	NA	NA	NA	NA	NA
SQE63858.1|1253521_1255195_+	Glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQE63859.1|1255341_1256259_+	hydrolase	NA	NA	NA	NA	NA
SQE63860.1|1256276_1257212_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQE63861.1|1257226_1257460_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
SQE63862.1|1257681_1258158_-	Glutathione peroxidase family protein	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
SQE63863.1|1258269_1259508_+	GTP-binding protein	NA	NA	NA	NA	NA
SQE63864.1|1259526_1260765_+	aluminum resistance protein, putative	NA	NA	NA	NA	NA
SQE63865.1|1261008_1261377_+	FemC, factor involved in methicillin resistance / Glutamine synthetase repressor	NA	NA	NA	NA	NA
SQE63866.1|1261395_1262736_+	glutamine synthetase	NA	NA	NA	NA	NA
1262684:1262721	attL	ACAGAACTCAAGTATCTGAATGGGAAAGAGATCAGTAC	NA	NA	NA	NA
SQE63867.1|1262875_1264003_-|integrase	integrase family protein	integrase	A0A0C5AN64	Paenibacillus_phage	31.2	1.1e-32
SQE63868.1|1264055_1264751_-	host cell surface-exposed lipofamily protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	43.9	3.6e-07
SQE63869.1|1264762_1265146_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE63870.1|1265292_1265661_-	helix-turn-helix family protein	NA	S4SVC5	Staphylococcus_phage	43.4	2.4e-18
SQE63871.1|1265812_1266022_+	helix-turn-helix family protein	NA	A7TWF1	Staphylococcus_phage	58.7	4.1e-15
SQE63872.1|1266065_1266341_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE63873.1|1266345_1266480_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE63874.1|1266510_1266609_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE63875.1|1266605_1266776_+	Uncharacterised protein	NA	Q4ZDZ8	Staphylococcus_virus	87.5	4.1e-21
SQE63876.1|1266764_1266971_-	Uncharacterised protein	NA	A1BTY8	Staphylococcus_virus	73.5	3.6e-24
SQE63877.1|1267031_1267715_+	prophage, antirepressor, putative	NA	A9CR56	Staphylococcus_phage	86.5	7.2e-109
SQE63878.1|1267813_1267975_+	phage protein	NA	R4IH12	Staphylococcus_phage	69.8	8.6e-13
SQE63879.1|1268061_1268379_+	phage protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
SQE63880.1|1268344_1268635_+	phage protein	NA	A0A1P8L6F4	Staphylococcus_phage	52.4	9.4e-18
SQE63881.1|1268639_1269176_+	glycosyl hydrolases 17 family protein	NA	A0A0H3U480	Staphylococcus_phage	82.5	1.7e-76
SQE63882.1|1269176_1269956_+	bacterial dnaA family protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.0	2.3e-127
SQE63883.1|1269982_1270531_+	Single stranded DNA-binding protein,phage-associated	NA	A7TWM8	Staphylococcus_phage	93.5	2.9e-92
SQE63884.1|1270544_1271462_+	dnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	51.1	8.6e-49
SQE63885.1|1271462_1271753_+	PVL orf 51-like protein	NA	A0A223LIA9	Staphylococcus_phage	56.8	2.7e-17
SQE63886.1|1271767_1271926_+	phage protein	NA	A0A0E3T9L7	Staphylococcus_phage	94.2	4.6e-19
SQE63887.1|1271931_1272243_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE63888.1|1272235_1272766_+	mazG nucleotide pyrophosphohydrolase domain protein	NA	A0A1P8VVP1	Streptococcus_phage	38.5	1.4e-22
SQE63889.1|1272799_1273264_+	Uncharacterised protein	NA	C9E2P0	Enterococcus_phage	43.0	1.9e-20
SQE63890.1|1273264_1273498_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE63891.1|1273540_1274029_+	sigma-70, region 4 family protein	NA	R9TMH4	Paenibacillus_phage	27.7	5.1e-08
SQE63892.1|1274181_1274610_+	homeo-like domain protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
SQE63893.1|1274596_1275871_+|terminase	phage terminase, large subunit, PBSX family	terminase	Q4ZE37	Staphylococcus_virus	76.4	1.9e-195
SQE63894.1|1275883_1277332_+|portal	phage portal protein, SPP1 family	portal	Q4ZE36	Staphylococcus_virus	69.2	1.4e-194
SQE63895.1|1277321_1278671_+	phage Mu protein F like protein (pseudogene)	NA	A0A1J0MF61	Staphylococcus_phage	57.6	1.7e-141
SQE63896.1|1278672_1278870_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE63897.1|1279028_1279607_+	Phage protein	NA	Q4ZE34	Staphylococcus_virus	50.8	1.9e-09
SQE63898.1|1279625_1280525_+|capsid	phage major capsid protein Fam0118	capsid	Q4ZE33	Staphylococcus_virus	61.1	2.0e-98
SQE63899.1|1280602_1281076_+|tail	phage phiSLT minor tail protein	tail	A0A1X9I9L0	Staphylococcus_phage	26.5	1.7e-08
SQE63900.1|1281091_1281418_+	phi 11 orf36	NA	Q4ZE31	Staphylococcus_virus	55.5	1.1e-25
SQE63901.1|1281417_1281723_+	phage protein	NA	Q4ZE30	Staphylococcus_virus	40.6	6.4e-17
SQE63902.1|1281723_1282074_+	phage protein	NA	H9A0N6	Staphylococcus_phage	60.0	9.3e-36
SQE63903.1|1282083_1282479_+	phi 11 orf38	NA	H9A0N7	Staphylococcus_phage	42.3	1.9e-21
SQE63904.1|1282490_1283090_+|tail	phage tail protein	tail	H9A0N8	Staphylococcus_phage	47.5	7.4e-17
SQE63905.1|1283151_1283496_+	phage protein	NA	A0A1J0MFH0	Staphylococcus_phage	58.9	1.0e-34
SQE63906.1|1283492_1283900_+	phi 11 orf41	NA	Q4ZE25	Staphylococcus_virus	72.3	2.6e-37
SQE63907.1|1283911_1287082_+|tail	phage tail length tape-measure protein	tail	Q4ZE24	Staphylococcus_virus	57.5	1.4e-93
SQE63908.1|1287096_1288032_+	phi 11 orf43	NA	A0A1J0MF79	Staphylococcus_phage	55.9	1.0e-97
SQE63909.1|1288040_1289726_+	phage minor structural protein	NA	Q4ZE19	Staphylococcus_virus	46.5	3.0e-108
SQE63910.1|1289743_1290757_+	phage minor structural protein	NA	A0A1J0MFI8	Staphylococcus_phage	52.3	4.2e-97
SQE63911.1|1290775_1292173_+	Uncharacterised protein	NA	A0A1J0MFK8	Staphylococcus_phage	44.7	2.6e-105
SQE63912.1|1292185_1292575_+|holin	holin	holin	A0A1S6L1J2	Staphylococcus_phage	38.2	5.3e-16
SQE63913.1|1292639_1293560_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQL2	Staphylococcus_phage	50.8	1.0e-65
SQE63914.1|1294447_1295383_+	Abortive infection bacteriophage resistance protein	NA	A0A059NT88	Lactococcus_phage	44.3	1.4e-70
SQE63915.1|1295833_1296250_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE63916.1|1296703_1296907_+	Uncharacterised protein	NA	A0A2H4PQT0	Staphylococcus_phage	61.8	4.4e-14
SQE63917.1|1296980_1297076_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE63918.1|1297426_1298767_+	phage Mu protein F like protein (pseudogene)	NA	A0A1J0MF61	Staphylococcus_phage	58.9	1.1e-140
1297361:1297398	attR	ACAGAACTCAAGTATCTGAATGGGAAAGAGATCAGTAC	NA	NA	NA	NA
>prophage 5
LS483308	Staphylococcus aureus strain NCTC13137 genome assembly, chromosome: 1	2761079	1572602	1580914	2761079	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
SQE64151.1|1572602_1573388_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.9	2.3e-18
SQE64152.1|1573513_1574404_-	endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
SQE64153.1|1574413_1575760_-	ATP-dependent RNA helicase YqfR	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
SQE64154.1|1575873_1576974_-	NIF3 protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
SQE64155.1|1576976_1577654_-|tRNA	Putative tRNA-m1A22 methylase	tRNA	NA	NA	NA	NA
SQE64156.1|1577784_1578891_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
SQE64157.1|1579114_1580914_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	1.0e-53
>prophage 6
LS483308	Staphylococcus aureus strain NCTC13137 genome assembly, chromosome: 1	2761079	1648747	1657790	2761079	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
SQE64226.1|1648747_1649266_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
SQE64227.1|1649287_1651561_-	Single-stranded-DNA-specific exonuclease recJ	NA	A7KV88	Bacillus_phage	29.1	2.4e-63
SQE64228.1|1651763_1654043_-	Protein-export membrane protein secD / Protein-export membrane protein secF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
SQE64229.1|1654317_1654578_-	Preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
SQE64230.1|1654596_1655736_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
SQE64231.1|1655758_1656784_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQE64232.1|1656785_1657790_-	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
LS483308	Staphylococcus aureus strain NCTC13137 genome assembly, chromosome: 1	2761079	1788838	1853311	2761079	tRNA,protease	Staphylococcus_phage(95.83%)	62	NA	NA
SQE64340.1|1788838_1795399_-	LPXTG-motif cell wall anchor domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.5	3.5e-309
SQE64341.1|1795724_1796036_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
SQE64342.1|1796057_1798475_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
SQE64343.1|1798762_1799944_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	96.4	5.1e-211
SQE64344.1|1800053_1801007_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
SQE64345.1|1801003_1801567_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	98.9	4.1e-102
SQE64346.1|1801686_1802088_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
SQE64347.1|1802659_1803487_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
SQE64348.1|1803720_1804722_+	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
SQE64349.1|1804843_1805308_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
SQE64350.1|1805320_1806502_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	1.5e-226
SQE64351.1|1806512_1807145_-	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
SQE64352.1|1807151_1808195_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
SQE64353.1|1808675_1810178_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
SQE64354.1|1810700_1811015_+	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
SQE64355.1|1811014_1812307_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
SQE64356.1|1812393_1813248_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
SQE64357.1|1813523_1813748_-	putative staphylococcal protein	NA	NA	NA	NA	NA
SQE64358.1|1813946_1814417_+	RNA polymerase sigma factor sigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
SQE64359.1|1814529_1814973_+	comK family protein	NA	NA	NA	NA	NA
SQE64360.1|1814959_1815403_-	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
SQE64361.1|1815698_1816334_+|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
SQE64362.1|1816773_1817487_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
SQE64363.1|1817746_1818049_+	membrane protein	NA	NA	NA	NA	NA
SQE64364.1|1818304_1818670_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
SQE64365.1|1818666_1819020_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
SQE64366.1|1819402_1820236_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
SQE64367.1|1820447_1821356_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
SQE64368.1|1821480_1822674_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
SQE64369.1|1823045_1824638_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
SQE64370.1|1824890_1825661_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.6	2.3e-143
SQE64371.1|1825641_1826121_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	100.0	1.7e-85
SQE64372.1|1826180_1826438_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
SQE64373.1|1826434_1827436_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.8	5.1e-188
SQE64374.1|1827440_1828919_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	98.0	1.6e-283
SQE64375.1|1829077_1829560_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	7.2e-79
SQE64376.1|1829871_1830486_+	endonuclease	NA	A0A2H4PQM8	Staphylococcus_phage	98.0	1.9e-47
SQE64377.1|1830566_1831562_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	93.5	8.1e-69
SQE64378.1|1831637_1832264_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	96.6	2.9e-96
SQE64379.1|1832304_1832646_+	Uncharacterised protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	1.0e-55
SQE64380.1|1832746_1833319_+	Uncharacterised protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
SQE64381.1|1833516_1834074_-	Domain of uncharacterised function (DUF955)	NA	A0A2H4PQN8	Staphylococcus_phage	96.2	3.5e-77
SQE64382.1|1834444_1834621_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE64383.1|1834631_1835153_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE64384.1|1835699_1836146_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA	NA
SQE64385.1|1837263_1837638_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA	NA
SQE64386.1|1837659_1838007_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA	NA
SQE64387.1|1838216_1838660_-	putative protein with DUF1433	NA	NA	NA	NA	NA
SQE64388.1|1839307_1840426_-	type I restriction-modification system, S subunit	NA	A0A2H4PQP5	Staphylococcus_phage	35.1	7.6e-39
SQE64389.1|1840418_1841975_-	Type I restriction enzyme EcoprrI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	2.6e-287
SQE64390.1|1842337_1843057_-|protease	Serine protease splD	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	1.0e-129
SQE64391.1|1843208_1843925_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.2	2.4e-131
SQE64392.1|1844082_1844802_-|protease	Serine protease splD	protease	A0A2H4PQP9	Staphylococcus_phage	98.7	1.3e-129
SQE64393.1|1844922_1845642_-|protease	Serine protease splC	protease	A0A2H4PQP7	Staphylococcus_phage	98.3	5.1e-129
SQE64394.1|1845699_1846422_-|protease	Serine protease splB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
SQE64395.1|1846578_1847238_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	94.5	2.0e-111
SQE64396.1|1848216_1848798_+	beta-lactamase	NA	A0A2H4PQH6	Staphylococcus_phage	62.7	2.6e-51
SQE64397.1|1849278_1849551_-	truncated BsaG protein	NA	A0A2H4PQH0	Staphylococcus_phage	82.4	4.8e-32
SQE64398.1|1849752_1850226_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE64399.1|1850230_1851022_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA	NA
SQE64400.1|1851390_1852374_-	Leukotoxin LukD	NA	A0A2H4PQH7	Staphylococcus_phage	98.8	1.5e-184
SQE64401.1|1852375_1853311_-	Leukocidin S subunit lukE	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 8
LS483308	Staphylococcus aureus strain NCTC13137 genome assembly, chromosome: 1	2761079	1942343	2029381	2761079	protease,terminase,tRNA,capsid,holin,head,tail	Staphylococcus_phage(83.75%)	110	NA	NA
SQE64479.1|1942343_1942646_-|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	tRNA	NA	NA	NA	NA
SQE64480.1|1943012_1944551_+	Sodium/proline symporter	NA	NA	NA	NA	NA
SQE64481.1|1944639_1945839_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA	NA
SQE64482.1|1945851_1947855_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
SQE64483.1|1947858_1950051_-	ATP-dependent DNA helicase UvrD/PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
SQE64484.1|1950047_1950740_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA	NA
SQE64485.1|1950911_1951214_-	His repressor	NA	NA	NA	NA	NA
SQE64486.1|1951322_1952618_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
SQE64487.1|1953478_1954645_+	Staphopain A precursor	NA	NA	NA	NA	NA
SQE64488.1|1954675_1955002_+|protease	putative cysteine protease inhibitor (Staphostatin A)	protease	NA	NA	NA	NA
SQE64489.1|1955293_1955467_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE64490.1|1955447_1956050_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA	NA
SQE64491.1|1956320_1957142_-	NH(3)-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
SQE64492.1|1957134_1958604_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
SQE64493.1|1958787_1959864_+	nitric-oxide synthase	NA	NA	NA	NA	NA
SQE64494.1|1959883_1960678_+	ACT domain protein	NA	NA	NA	NA	NA
SQE64495.1|1960867_1962430_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA	NA
SQE64496.1|1962634_1963732_-	cell wall surface anchor family protein	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
SQE64497.1|1964103_1964664_+	Nicotinamidase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
SQE64498.1|1964716_1965646_+	inorganic pyrophosphatase	NA	NA	NA	NA	NA
SQE64499.1|1966063_1967443_+	Aldehyde dehydrogenase	NA	NA	NA	NA	NA
SQE64500.1|1967562_1968591_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
SQE64501.1|1968860_1969262_+	yolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
SQE64502.1|1969834_1970008_-	exported protein	NA	NA	NA	NA	NA
SQE64503.1|1970386_1971499_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
SQE64504.1|1971555_1972398_-	exported protein	NA	NA	NA	NA	NA
SQE64505.1|1972394_1972952_-	Predicted membrane protein	NA	NA	NA	NA	NA
SQE64506.1|1973012_1973537_-	membrane protein	NA	NA	NA	NA	NA
SQE64507.1|1973657_1974221_+	Thioredoxin	NA	NA	NA	NA	NA
SQE64508.1|1974286_1975027_-	ABC-2 transporter family protein	NA	NA	NA	NA	NA
SQE64509.1|1975026_1975899_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
SQE64510.1|1975895_1976576_-	membrane protein	NA	NA	NA	NA	NA
SQE64511.1|1976576_1977473_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
SQE64512.1|1977469_1977850_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE64513.1|1978108_1978285_-	membrane protein	NA	NA	NA	NA	NA
SQE64514.1|1978825_1980112_+	Aspartate aminotransferase	NA	NA	NA	NA	NA
SQE64515.1|1980435_1980726_-	truncated map-w protein; extracellular adherence protein of broad specificity Eap/Map	NA	NA	NA	NA	NA
SQE64516.1|1980736_1982485_-	Outer membrane protein	NA	NA	NA	NA	NA
SQE64517.1|1982870_1983071_+	beta-hemolysin	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
SQE64518.1|1984245_1984596_-	Involved in expression of fibrinogen binding protein, phage associated	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
SQE64519.1|1985107_1985404_-	amidase	NA	A0A1P8L6B4	Staphylococcus_phage	95.9	1.6e-49
SQE64520.1|1986093_1986585_-	Staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
SQE64521.1|1986775_1987531_-	Autolysin	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
SQE64522.1|1987542_1987797_-|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
SQE64523.1|1988387_1989170_-	Enterotoxin P, phage associated	NA	A0A075M4C7	Staphylococcus_phage	99.6	1.6e-149
SQE64524.1|1989278_1989455_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE64525.1|1989581_1989956_-	phage protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
SQE64526.1|1990011_1990299_-	phi PVL ORF 22-like protein	NA	A0A075LZJ6	Staphylococcus_phage	100.0	5.8e-44
SQE64527.1|1990345_1990498_-	phage protein	NA	D2JLG0	Staphylococcus_phage	98.0	1.2e-19
SQE64528.1|1990487_1994273_-	phage minor structural protein	NA	Q6R866	Staphylococcus_virus	98.7	0.0e+00
SQE64529.1|1994288_1995773_-	bacteriophage protein	NA	A0A068A242	Staphylococcus_phage	100.0	1.5e-297
SQE64530.1|1995769_2000284_-|tail	bacteriophage tail tape measure protein, TP901 family	tail	A0A075M036	Staphylococcus_phage	91.2	0.0e+00
SQE64531.1|2000340_2000478_-	phage protein	NA	A0A068A227	Staphylococcus_phage	100.0	3.4e-18
SQE64532.1|2000528_2000879_-	phage protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
SQE64533.1|2001194_2001839_-|tail	phage major tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
SQE64534.1|2001839_2002247_-	putative bacteriophage protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
SQE64535.1|2002243_2002648_-	bacteriophage protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
SQE64536.1|2002644_2003007_-|head,tail	phage head-tail adaptor	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
SQE64537.1|2002990_2003275_-	Gp6 protein	NA	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
SQE64538.1|2003264_2003549_-|terminase	phage terminase small subunit	terminase	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
SQE64539.1|2003568_2004714_-|capsid	Phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	99.7	2.8e-214
SQE64540.1|2004737_2005475_-	ATP-dependent endopeptidase clp proteolytic subunit	NA	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
SQE64541.1|2005458_2006646_-	Portal protein, phage associated	NA	G4KNQ1	Staphylococcus_phage	100.0	4.6e-220
SQE64542.1|2006661_2008323_-|terminase	Phage terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	98.4	0.0e+00
SQE64543.1|2008319_2008664_-	phage protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
SQE64544.1|2008793_2009090_-	phage-associated homing endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	1.7e-51
SQE64545.1|2009324_2009741_-	phage transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
SQE64546.1|2009768_2009969_-	phage protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
SQE64547.1|2009968_2010118_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
SQE64548.1|2010114_2010321_-	phage protein	NA	S4V684	Staphylococcus_phage	82.4	2.4e-23
SQE64549.1|2010357_2010891_-	dUTPase family protein	NA	U5U798	Staphylococcus_phage	97.7	7.4e-93
SQE64550.1|2010905_2011067_-	Uncharacterised protein	NA	M9NTB4	Staphylococcus_phage	100.0	4.9e-24
SQE64551.1|2011067_2011241_-	Uncharacterised protein	NA	A0A2H4PQJ2	Staphylococcus_phage	100.0	1.8e-24
SQE64552.1|2011230_2011482_-	Phage protein	NA	G4KNP4	Staphylococcus_phage	96.4	4.1e-38
SQE64553.1|2011474_2011885_-	putative phi PVL-like protein	NA	A0A1X9H0B8	Staphylococcus_phage	85.3	7.7e-58
SQE64554.1|2011881_2012391_-	Uncharacterised protein	NA	A0A1X9H0D4	Staphylococcus_phage	96.4	6.2e-89
SQE64555.1|2012387_2012795_-	yopX family protein	NA	I6TG10	Staphylococcus_virus	53.4	8.8e-30
SQE64556.1|2012791_2013196_-	putative phage PVL protein	NA	A0A2I6PDC0	Staphylococcus_phage	71.4	2.2e-44
SQE64557.1|2013210_2013453_-	phage conserved Open Reading Frame 51	NA	A0A2I6PF06	Staphylococcus_phage	96.2	3.6e-39
SQE64558.1|2013458_2013713_-	phage protein	NA	Q6R831	Staphylococcus_virus	100.0	1.3e-42
SQE64559.1|2013712_2014222_-	phage protein	NA	C8CGZ9	Staphylococcus_phage	91.7	5.1e-43
SQE64560.1|2014222_2014408_-	Protein of uncharacterised function (DUF3113)	NA	Q4ZA46	Staphylococcus_virus	98.4	2.1e-26
SQE64561.1|2014412_2014817_-	putative phi ETA-like protein	NA	G4KNP2	Staphylococcus_phage	100.0	1.6e-68
SQE64562.1|2014826_2015048_-	putative phi ETA-like protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
SQE64563.1|2015060_2015219_-	Uncharacterised protein	NA	A0A2I6PDX0	Staphylococcus_phage	94.2	8.4e-21
SQE64564.1|2015215_2016001_-	ORF017	NA	A0A2I6PDV5	Staphylococcus_phage	99.6	1.6e-144
SQE64565.1|2016013_2016835_-	N-terminal phage replisome organizer	NA	A0A0H3U476	Staphylococcus_phage	98.2	1.9e-124
SQE64566.1|2016806_2017502_-	phage protein	NA	A0A2H4JAQ0	uncultured_Caudovirales_phage	97.4	1.7e-129
SQE64567.1|2017515_2017944_-	Single-stranded DNA-binding protein, phage associated	NA	B2ZYV4	Staphylococcus_phage	99.3	8.6e-60
SQE64568.1|2017943_2018567_-	putative phage topoisomerase	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
SQE64569.1|2018559_2018781_-	phage protein	NA	B2ZYV2	Staphylococcus_phage	100.0	3.2e-34
SQE64570.1|2018790_2019051_-	Putative cytosolic protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
SQE64571.1|2019143_2019305_-	phage protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
SQE64572.1|2019301_2019622_-	Uncharacterized protein conserved in bacteria	NA	A0A2I6PDH6	Staphylococcus_phage	99.1	2.5e-56
SQE64573.1|2019651_2019870_-	phi PV83 orf 10-like protein	NA	Q4ZBN1	Staphylococcus_phage	93.1	3.1e-29
SQE64574.1|2019885_2020638_-	antirepressor	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
SQE64575.1|2020688_2021024_+	Phage protein	NA	M9NS98	Staphylococcus_phage	98.2	1.2e-51
SQE64576.1|2021041_2021227_-	phage protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	1.4e-19
SQE64577.1|2021242_2021506_-	putative phage transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
SQE64578.1|2021639_2022353_+	CI-like repressor, phage associated	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
SQE64579.1|2022368_2023301_+	DNA polymerase III subunit alpha	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
SQE64580.1|2023306_2023648_+	phage protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
SQE64581.1|2023851_2024019_+	Putative cytosolic protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
SQE64582.1|2024158_2024698_+	PemK-like growth inhibitor protein	NA	U5U4R0	Staphylococcus_phage	32.4	1.2e-13
SQE64583.1|2024870_2025908_+	DNA integration/recombination/inversion protein	NA	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
SQE64584.1|2025964_2026162_+	phospholipase C	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	2.0e-19
SQE64585.1|2026406_2026790_+	phospholipase C	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	2.6e-71
SQE64586.1|2027290_2027926_-	gamma-hemolysin component B	NA	A0A2I6PER8	Staphylococcus_phage	32.5	1.1e-15
SQE64587.1|2028043_2028307_-	gamma-hemolysin component B	NA	NA	NA	NA	NA
SQE64588.1|2028328_2029381_-	Leukocidin S subunit	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	2.5e-36
