The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483302	Staphylococcus aureus strain NCTC8726 genome assembly, chromosome: 1	2751084	259161	297388	2751084	transposase,lysis,holin	Staphylococcus_virus(25.0%)	33	NA	NA
SQE39741.1|259161_259563_-|transposase	putative transposase	transposase	A0ZS58	Staphylococcus_virus	83.7	2.2e-12
SQE39742.1|260040_260715_+	DnrN	NA	NA	NA	NA	NA
SQE39743.1|260960_262715_+|lysis	Autolysis histidine kinase LytS	lysis	Q9EYF3	Enterobacteria_phage	31.3	1.5e-62
SQE39744.1|262717_263458_+|lysis	Autolysis response regulater LytR	lysis	NA	NA	NA	NA
SQE39745.1|263576_264014_+|holin	holin-like protein	holin	NA	NA	NA	NA
SQE39746.1|264006_264708_+	LrgA-associated membrane protein LrgB	NA	NA	NA	NA	NA
SQE39747.1|264814_265519_-	Transcriptional regulator, GntR family	NA	NA	NA	NA	NA
SQE39748.1|265665_266457_+	PTS family glucose/glucoside (glc) porter component IIABC	NA	NA	NA	NA	NA
SQE39749.1|266472_267909_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.2	4.8e-30
SQE39750.1|268481_269243_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SQE39751.1|269492_270407_-	Ribokinase	NA	NA	NA	NA	NA
SQE39752.1|270434_270839_-	Ribose ABC transport system, high affinity permease RbsD	NA	NA	NA	NA	NA
SQE39753.1|270853_271735_-	sugar transport protein	NA	NA	NA	NA	NA
SQE39754.1|271966_272965_-	ribose operon repressor, putative	NA	NA	NA	NA	NA
SQE39755.1|273448_274825_-	multidrug resistance protein B	NA	NA	NA	NA	NA
SQE39756.1|275058_276051_+	choloylglycine hydrolase	NA	M1H9I8	Acanthocystis_turfacea_Chlorella_virus	25.5	1.3e-21
SQE39757.1|276376_277327_+	peptidoglycan hydrolase	NA	V5R8R0	Arthrobacter_phage	42.7	1.2e-16
SQE39758.1|277378_278038_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	36.1	4.9e-22
SQE39759.1|278051_278972_-	ABC-2 family transporter protein	NA	NA	NA	NA	NA
SQE39760.1|278968_280135_-	ABC-2 transporter family protein	NA	NA	NA	NA	NA
SQE39761.1|280202_281726_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE39762.1|282056_282959_-	staphyloxanthin biosynthesis protein, putative	NA	NA	NA	NA	NA
SQE39763.1|283197_283491_+	Virulence factor esxA	NA	NA	NA	NA	NA
SQE39764.1|283525_285172_-|transposase	transposase	transposase	A0ZS58	Staphylococcus_virus	99.8	3.9e-294
SQE39765.1|285489_288519_+	Putative secretion accessory protein EsaA/YueB	NA	NA	NA	NA	NA
SQE39766.1|288518_288977_+	Putative secretion system component EssA	NA	NA	NA	NA	NA
SQE39767.1|288948_289191_+	Putative secretion accessory protein EsaB/YukD	NA	NA	NA	NA	NA
SQE39768.1|289203_290538_+	essB	NA	NA	NA	NA	NA
SQE39769.1|290559_292635_+	FtsK/SpoIIIE family protein, putative secretion system component EssC/YukA	NA	NA	NA	NA	NA
SQE39770.1|292687_295009_+	essC	NA	V5UPA0	Mycobacterium_phage	22.3	1.6e-19
SQE39771.1|295011_295278_+	type VII secretion effector	NA	NA	NA	NA	NA
SQE39772.1|295300_295696_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE39773.1|295717_297388_+|transposase	putative transposase	transposase	NA	NA	NA	NA
>prophage 2
LS483302	Staphylococcus aureus strain NCTC8726 genome assembly, chromosome: 1	2751084	710456	718275	2751084		Hokovirus(16.67%)	10	NA	NA
SQE40154.1|710456_711512_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
SQE40155.1|711511_712198_-	Response regulator SaeR	NA	NA	NA	NA	NA
SQE40156.1|712172_712646_-	DoxX family protein	NA	NA	NA	NA	NA
SQE40157.1|712986_713427_-	lipoprotein	NA	NA	NA	NA	NA
SQE40158.1|713706_714291_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE40159.1|714389_715103_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
SQE40160.1|715106_715526_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
SQE40161.1|715527_716196_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
SQE40162.1|716546_717140_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	8.9e-39
SQE40163.1|717123_718275_+	Para-aminobenzoate synthetase component I	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 3
LS483302	Staphylococcus aureus strain NCTC8726 genome assembly, chromosome: 1	2751084	730251	744529	2751084		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
SQE40172.1|730251_731310_+	histidinol-phosphate aminotransferase	NA	A0A0H3TLT9	Faustovirus	26.9	2.6e-20
SQE40173.1|731467_732010_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
SQE40174.1|732180_732330_+	Protein of uncharacterised function (DUF3125)	NA	NA	NA	NA	NA
SQE40175.1|732705_733623_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
SQE40176.1|733892_735398_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	3.4e-58
SQE40177.1|735738_736239_-	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
SQE40178.1|736258_737125_-	Integral membrane domain protein	NA	NA	NA	NA	NA
SQE40179.1|737926_738325_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
SQE40180.1|738287_740393_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
SQE40181.1|740510_741482_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
SQE40182.1|741856_742828_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.9	1.0e-140
SQE40183.1|742814_743771_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
SQE40184.1|743767_744529_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	3.6e-16
>prophage 4
LS483302	Staphylococcus aureus strain NCTC8726 genome assembly, chromosome: 1	2751084	840980	885480	2751084	holin,head,terminase,tRNA,capsid,portal,tail	Staphylococcus_phage(88.52%)	64	NA	NA
SQE40279.1|840980_842222_+	Selenocysteine lyase	NA	Q2XUY6	environmental_halophage	44.8	1.1e-110
SQE40280.1|842211_842676_+	Iron-sulfur cluster assembly scaffold protein IscU	NA	NA	NA	NA	NA
SQE40281.1|842826_844224_+	Scaffold protein sufB	NA	NA	NA	NA	NA
SQE40282.1|844291_845341_-	Integrase	NA	A0A0H4ISP4	Staphylococcus_phage	99.7	1.7e-202
SQE40283.1|845402_846644_-	SAP domain-containing protein	NA	NA	NA	NA	NA
SQE40284.1|846688_847363_-	phage protein	NA	A0A0F6N3H6	Staphylococcus_phage	92.4	2.9e-118
SQE40285.1|847379_847712_-	Transcriptional regulator, Cro/CI family helix-turn-helix domain protein	NA	R4IH08	Staphylococcus_phage	98.2	2.0e-56
SQE40286.1|847973_848168_+	helix-turn-helix domain protein	NA	A0A0F6N3M9	Staphylococcus_phage	93.8	7.7e-24
SQE40287.1|848167_848941_+	anti-repressor	NA	Q4ZCB0	Staphylococcus_virus	87.9	1.3e-125
SQE40288.1|848941_849166_+	phage protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
SQE40289.1|849205_849655_+	phi PV83 orf 10-like protein	NA	A0A0H3U2S4	Staphylococcus_phage	100.0	2.3e-79
SQE40290.1|849671_849890_+	phage protein	NA	A0A0F6N3I2	Staphylococcus_phage	98.6	9.5e-31
SQE40291.1|849882_850044_+	phage protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
SQE40292.1|850136_850397_+	putative phi PVL-like protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
SQE40293.1|850405_850669_+	phage protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
SQE40294.1|850671_852621_+	Uncharacterized conserved protein	NA	R9QT82	Staphylococcus_phage	99.2	0.0e+00
SQE40295.1|852622_853543_+	recombinase, phage RecT family protein	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
SQE40296.1|853755_854241_+	Metallo-beta-lactamase superfamily domain protein in prophage	NA	A0A1P8L6F7	Staphylococcus_phage	99.4	2.7e-86
SQE40297.1|854241_854712_+	Single-stranded DNA-binding protein, phage associated	NA	I1W659	Staphylococcus_phage	97.4	5.3e-79
SQE40298.1|854741_855626_+	Phage protein	NA	S4V6D4	Staphylococcus_phage	96.3	6.2e-137
SQE40299.1|855632_855851_+	phage protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
SQE40300.1|855859_856264_+	endodeoxyribonuclease RusA family protein	NA	O80087	Staphylococcus_phage	99.3	1.4e-72
SQE40301.1|856276_856648_+	PVL ORF-50-like family protein	NA	A7TWA7	Staphylococcus_phage	99.2	1.3e-56
SQE40302.1|856648_856897_+	phage family protein	NA	W5R983	Staphylococcus_phage	97.6	1.5e-40
SQE40303.1|856937_857186_+	Phage protein	NA	A0A2H4PQK1	Staphylococcus_phage	95.1	4.5e-37
SQE40304.1|857178_857688_+	dUTP pyrophosphatase	NA	A0A1X9H051	Staphylococcus_phage	99.4	2.5e-90
SQE40305.1|857724_857970_+	phage protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
SQE40306.1|857966_858155_+	phage protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
SQE40307.1|858129_858330_+	phage protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
SQE40308.1|858329_858506_+	transcriptional activator rinb-like protein	NA	A0A0E3TAH3	Staphylococcus_phage	94.7	1.1e-21
SQE40309.1|858506_858872_+	phage protein	NA	I1W652	Staphylococcus_phage	99.2	2.8e-59
SQE40310.1|858872_859019_+	phage protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
SQE40311.1|859042_859465_+	phage transcriptional activator RinA	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
SQE40312.1|859795_860290_+	phage protein	NA	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
SQE40313.1|860282_861506_+|terminase	phage terminase, large subunit, PBSX family	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
SQE40314.1|861502_862927_+|portal	phage portal protein, SPP1 family	portal	Q4ZBZ7	Staphylococcus_virus	99.6	1.2e-270
SQE40315.1|862895_863849_+|head	phage minor head protein	head	A0A0N7E0U6	Staphylococcus_phage	99.1	7.3e-176
SQE40316.1|863850_864057_+|tRNA	putative seryl-tRNA synthetase	tRNA	A0A2H4JAK3	uncultured_Caudovirales_phage	100.0	1.4e-28
SQE40317.1|864159_864744_+	phage protein	NA	A0A0N7E0U8	Staphylococcus_phage	96.4	1.4e-73
SQE40318.1|864760_865675_+|capsid	phage major capsid protein, HK97 family	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
SQE40319.1|865686_865830_+	phage protein	NA	A0A0E3XC49	Staphylococcus_phage	100.0	4.6e-18
SQE40320.1|865835_866186_+|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	100.0	1.9e-60
SQE40321.1|866197_866533_+|head,tail	putative head-tail adaptor	head,tail	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
SQE40322.1|866519_866927_+	phage protein	NA	A0A0E3T8J0	Staphylococcus_phage	99.3	1.7e-73
SQE40323.1|866939_867365_+	phage protein	NA	A0A0E3XBP2	Staphylococcus_phage	100.0	1.2e-74
SQE40324.1|867365_867923_+|tail	putative tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
SQE40325.1|867989_868496_+	phage family protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
SQE40326.1|868540_868825_+	phage protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
SQE40327.1|868828_871714_+	phage tape measure protein	NA	A1KXA6	Staphylococcus_virus	99.6	0.0e+00
SQE40328.1|871728_872670_+|tail	phage tail family protein	tail	A1KXA7	Staphylococcus_virus	99.4	4.8e-180
SQE40329.1|872680_874567_+	GDSL-like Lipase/Acylhydrolase family protein	NA	A0A0H3U2R3	Staphylococcus_phage	100.0	0.0e+00
SQE40330.1|874579_876478_+	phage protein	NA	A0A0H3U448	Staphylococcus_phage	98.4	0.0e+00
SQE40331.1|876477_878301_+	phiETA ORF57-like protein	NA	A0A0E3XBS0	Staphylococcus_phage	98.8	0.0e+00
SQE40332.1|878300_878678_+	SLT orf 129-like protein	NA	A0A2H4PQW4	Staphylococcus_phage	100.0	5.3e-61
SQE40333.1|878678_878861_+	phage protein	NA	A0A2H4PQV2	Staphylococcus_phage	100.0	1.9e-29
SQE40334.1|878901_879201_+	hypothetical phage-related protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
SQE40335.1|879337_881212_+	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA	A0A2I6PCX0	Staphylococcus_phage	99.0	0.0e+00
SQE40336.1|881224_882397_+|tail	phage tail fiber protein	tail	B2ZZ03	Staphylococcus_phage	99.7	1.9e-197
SQE40337.1|882402_882798_+	phi ETA orf 63-like protein	NA	A0A2H4PQP8	Staphylococcus_phage	100.0	2.1e-68
SQE40338.1|882853_883291_+|holin	holin, phage phi LC3 family	holin	A0A2H4PQP0	Staphylococcus_phage	99.3	1.5e-72
SQE40339.1|883271_884717_+	N-acetylmuramoyl-L-alanine amidase family protein	NA	Q4ZB16	Staphylococcus_virus	99.6	9.1e-295
SQE40340.1|884983_885112_+	Uncharacterised protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	1.1e-15
SQE40341.1|885182_885293_+	Uncharacterised protein	NA	W5R8J7	Staphylococcus_phage	97.2	3.8e-12
SQE40342.1|885294_885480_+	Uncharacterised protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
>prophage 5
LS483302	Staphylococcus aureus strain NCTC8726 genome assembly, chromosome: 1	2751084	1039704	1048177	2751084		Synechococcus_phage(33.33%)	9	NA	NA
SQE40481.1|1039704_1040187_+	AIR carboxylase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	6.8e-21
SQE40482.1|1040173_1041298_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
SQE40483.1|1041301_1042006_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	3.6e-47
SQE40484.1|1042005_1042269_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
SQE40485.1|1042270_1042942_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
SQE40486.1|1042934_1045124_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
SQE40487.1|1045102_1046587_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
SQE40488.1|1046579_1047608_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	1.5e-62
SQE40489.1|1047610_1048177_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.0	4.0e-28
>prophage 6
LS483302	Staphylococcus aureus strain NCTC8726 genome assembly, chromosome: 1	2751084	1237910	1309325	2751084	transposase,protease,tRNA	Cafeteria_roenbergensis_virus(12.5%)	60	NA	NA
SQE40666.1|1237910_1239218_+|tRNA	tRNA:m(5)U-54 MTase gid	tRNA	NA	NA	NA	NA
SQE40667.1|1239635_1240532_+	Site-specific tyrosine recombinase	NA	A0A0K2CP59	Brevibacillus_phage	31.9	4.6e-31
SQE40668.1|1240528_1241074_+|protease	ATP-dependent protease HslV	protease	NA	NA	NA	NA
SQE40669.1|1241139_1242543_+	ATP-dependent endopeptidase hsl ATP-binding subunit	NA	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
SQE40670.1|1242567_1243341_+	GTP-sensing transcriptional pleiotropic repressor codY	NA	NA	NA	NA	NA
SQE40671.1|1243682_1244450_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
SQE40672.1|1244631_1245513_+	Translation elongation factor Ts	NA	NA	NA	NA	NA
SQE40673.1|1245649_1246372_+	Uridylate kinase	NA	NA	NA	NA	NA
SQE40674.1|1246390_1246945_+	Ribosome recycling factor	NA	NA	NA	NA	NA
SQE40675.1|1247317_1248088_+	Undecaprenyl pyrophosphate synthetase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
SQE40676.1|1248094_1248877_+	Phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SQE40677.1|1249088_1250375_+|protease	Membrane-associated zinc metalloprotease	protease	NA	NA	NA	NA
SQE40678.1|1250394_1252098_+|tRNA	Prolyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQE40679.1|1252355_1256672_+	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
SQE40680.1|1256961_1257429_+	Putative cytosolic protein	NA	NA	NA	NA	NA
SQE40681.1|1257449_1258625_+	Transcription termination protein NusA	NA	NA	NA	NA	NA
SQE40682.1|1258645_1258930_+	nucleic-acid-binding protein implicated in transcription termination	NA	NA	NA	NA	NA
SQE40683.1|1258926_1259244_+	ribosomal protein L7Ae family protein	NA	NA	NA	NA	NA
SQE40684.1|1259248_1261366_+	protein translation initiation factor 2 (IF-2)	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
SQE40685.1|1261752_1262103_+	ribosome-binding factor A	NA	NA	NA	NA	NA
SQE40686.1|1262272_1263190_+|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
SQE40687.1|1263204_1264176_+	Riboflavin kinase / FMN adenylyltransferase	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
SQE40688.1|1264290_1264560_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
SQE40689.1|1267259_1268933_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
SQE40690.1|1269187_1271557_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	7.3e-84
SQE40691.1|1271561_1272275_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE40692.1|1272305_1273571_+|protease	Zinc protease	protease	A0A1X9I714	Streptococcus_phage	26.8	2.0e-40
SQE40693.1|1273570_1274857_+	peptidase, M16 family	NA	G3MBJ8	Bacillus_virus	27.9	6.7e-15
SQE40694.1|1274856_1275561_+	3-oxoacyl-[acyl-carrier protein] reductase	NA	NA	NA	NA	NA
SQE40695.1|1275665_1276493_+	protein with ACT domain	NA	NA	NA	NA	NA
SQE40696.1|1276511_1276904_+	DNA-binding protein	NA	NA	NA	NA	NA
SQE40697.1|1276937_1277516_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
SQE40698.1|1277741_1278893_+	Competence/damage-inducible protein CinA	NA	NA	NA	NA	NA
SQE40699.1|1279057_1280101_+	recombinase A	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
SQE40700.1|1280454_1282014_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA	NA
SQE40701.1|1282311_1282527_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE40702.1|1282700_1283498_+	Phosphoesterase family protein	NA	NA	NA	NA	NA
SQE40703.1|1283637_1285398_+	2-oxoacid ferredoxin oxidoreductase subunit alpha	NA	NA	NA	NA	NA
SQE40704.1|1285398_1286265_+	2-oxoglutarate oxidoreductase, beta subunit	NA	NA	NA	NA	NA
SQE40705.1|1286357_1286651_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQE40706.1|1286784_1288329_+|tRNA	tRNA-i(6)A37 methylthiotransferase	tRNA	NA	NA	NA	NA
SQE40707.1|1288329_1288695_+	membrane protein	NA	NA	NA	NA	NA
SQE40708.1|1288721_1289213_+	Substrate-specific component ThiWthiazole ECF transporter	NA	NA	NA	NA	NA
SQE40709.1|1289515_1292134_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.5	3.8e-41
SQE40710.1|1292146_1294156_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.5	3.1e-59
SQE40711.1|1294170_1294704_+	glycerol uptake operon antiterminator regulatory protein	NA	NA	NA	NA	NA
SQE40712.1|1295178_1295997_+	Glycerol uptake facilitator protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
SQE40713.1|1296127_1297624_+	glycerol kinase	NA	NA	NA	NA	NA
SQE40714.1|1297781_1299455_+	Glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQE40715.1|1299601_1300519_+	hydrolase	NA	NA	NA	NA	NA
SQE40716.1|1300536_1301472_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQE40717.1|1301486_1301720_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
SQE40718.1|1301941_1302418_-	Glutathione peroxidase family protein	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
SQE40719.1|1302529_1303768_+	GTP-binding protein	NA	NA	NA	NA	NA
SQE40720.1|1303786_1305025_+	aluminum resistance protein, putative	NA	NA	NA	NA	NA
SQE40721.1|1305268_1305637_+	FemC, factor involved in methicillin resistance / Glutamine synthetase repressor	NA	NA	NA	NA	NA
SQE40722.1|1305655_1306996_+	glutamine synthetase	NA	NA	NA	NA	NA
SQE40723.1|1308190_1308361_-|transposase	truncated transposase	transposase	NA	NA	NA	NA
SQE40724.1|1308357_1309002_-|transposase	transposase	transposase	A0A0C5AEB1	Paenibacillus_phage	55.5	4.5e-52
SQE40725.1|1309043_1309325_-|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	64.5	6.5e-24
>prophage 7
LS483302	Staphylococcus aureus strain NCTC8726 genome assembly, chromosome: 1	2751084	1582957	1591269	2751084	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
SQE40958.1|1582957_1583743_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
SQE40959.1|1583868_1584759_-	endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
SQE40960.1|1584768_1586115_-	ATP-dependent RNA helicase YqfR	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
SQE40961.1|1586228_1587329_-	NIF3 protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
SQE40962.1|1587331_1588009_-|tRNA	Putative tRNA-m1A22 methylase	tRNA	NA	NA	NA	NA
SQE40963.1|1588139_1589246_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
SQE40964.1|1589469_1591269_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	1.3e-53
>prophage 8
LS483302	Staphylococcus aureus strain NCTC8726 genome assembly, chromosome: 1	2751084	1660761	1669802	2751084	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
SQE41035.1|1660761_1661280_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	1.2e-28
SQE41036.1|1661301_1663575_-	Single-stranded-DNA-specific exonuclease recJ	NA	A7KV88	Bacillus_phage	29.7	4.3e-65
SQE41037.1|1663775_1666055_-	Protein-export membrane protein secD / Protein-export membrane protein secF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
SQE41038.1|1666329_1666590_-	Preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
SQE41039.1|1666608_1667748_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
SQE41040.1|1667770_1668796_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQE41041.1|1668797_1669802_-	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 9
LS483302	Staphylococcus aureus strain NCTC8726 genome assembly, chromosome: 1	2751084	1793200	1855350	2751084	transposase,protease,tRNA	Staphylococcus_phage(93.75%)	60	NA	NA
SQE41144.1|1793200_1799749_-	putative surface anchored protein	NA	A0A2H4PQU6	Staphylococcus_phage	86.5	2.9e-287
SQE41145.1|1800073_1800385_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	97.1	6.9e-51
SQE41146.1|1800406_1802824_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.7	0.0e+00
SQE41147.1|1803111_1804293_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
SQE41148.1|1804402_1805356_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
SQE41149.1|1805352_1805916_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	4.1e-102
SQE41150.1|1806032_1806434_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
SQE41151.1|1807005_1807833_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
SQE41152.1|1808066_1809068_+	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
SQE41153.1|1809189_1809654_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	98.1	3.8e-69
SQE41154.1|1809666_1810848_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	2.1e-225
SQE41155.1|1810858_1811491_-	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	98.1	9.3e-111
SQE41156.1|1811497_1812541_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	1.6e-195
SQE41157.1|1813022_1814525_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
SQE41158.1|1815168_1815483_+	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
SQE41159.1|1815482_1816775_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	93.5	8.3e-215
SQE41160.1|1816861_1817716_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
SQE41161.1|1817991_1818216_-	putative staphylococcal protein	NA	NA	NA	NA	NA
SQE41162.1|1818414_1818885_+	DNA-binding protein	NA	A0A2H4PQT5	Staphylococcus_phage	85.2	3.8e-69
SQE41163.1|1818997_1819441_+	comK family protein	NA	NA	NA	NA	NA
SQE41164.1|1819427_1819871_-	membrane protein	NA	A0A2H4PQT8	Staphylococcus_phage	78.6	8.4e-50
SQE41165.1|1820167_1820803_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQE41166.1|1820969_1821590_+	membrane protein	NA	NA	NA	NA	NA
SQE41167.1|1822149_1822863_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
SQE41168.1|1823121_1823424_+	membrane protein	NA	NA	NA	NA	NA
SQE41169.1|1823678_1824044_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	1.4e-58
SQE41170.1|1824040_1824394_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.9	1.4e-20
SQE41171.1|1824642_1825476_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	1.6e-158
SQE41172.1|1825687_1826596_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
SQE41173.1|1826720_1827914_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.2	2.2e-217
SQE41174.1|1828284_1829877_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
SQE41175.1|1830171_1830942_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	96.4	3.7e-138
SQE41176.1|1830922_1831402_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	3.0e-85
SQE41177.1|1831461_1831719_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	98.8	2.1e-45
SQE41178.1|1831715_1832717_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.4	5.9e-184
SQE41179.1|1832721_1834200_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.9	8.4e-280
SQE41180.1|1834358_1834841_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	95.9	1.0e-77
SQE41181.1|1835152_1835767_+	endonuclease	NA	A0A2H4PQM8	Staphylococcus_phage	76.5	8.7e-29
SQE41182.1|1835847_1836843_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	95.6	1.5e-70
SQE41183.1|1836918_1837542_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	2.5e-76
SQE41184.1|1837582_1837924_+	Uncharacterised protein	NA	A0A2H4PQN6	Staphylococcus_phage	93.8	1.3e-53
SQE41185.1|1838024_1838597_+	Uncharacterised protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
SQE41186.1|1839116_1839293_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE41187.1|1839303_1839687_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE41188.1|1840076_1840370_-|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	64.1	3.3e-18
SQE41189.1|1841268_1842471_-	putative restriction and modification system specificity protein	NA	A0A2H4PQP5	Staphylococcus_phage	37.3	3.0e-49
SQE41190.1|1842463_1844020_-	Type I restriction enzyme EcoprrI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	98.1	1.0e-283
SQE41191.1|1844110_1844215_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE41192.1|1844372_1845092_-|protease	Serine protease splD	protease	A0A2H4PQP1	Staphylococcus_phage	94.6	7.5e-125
SQE41193.1|1845257_1845737_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	96.2	1.7e-85
SQE41194.1|1846139_1846856_-	serine proteinase	NA	A0A2H4PQN5	Staphylococcus_phage	62.2	7.1e-83
SQE41195.1|1846979_1847699_-|protease	Serine protease splC	protease	A0A2H4PQP7	Staphylococcus_phage	92.9	2.7e-122
SQE41196.1|1847756_1848479_-|protease	Serine protease splB	protease	A0A2H4PQN0	Staphylococcus_phage	90.4	2.1e-119
SQE41197.1|1848597_1849305_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	95.3	6.7e-126
SQE41198.1|1850271_1850841_+	beta-lactamase	NA	A0A2H4PQH6	Staphylococcus_phage	63.2	1.7e-50
SQE41199.1|1851316_1851535_-	lantibiotic ABC transporter protein	NA	A0A2H4PQH0	Staphylococcus_phage	81.9	1.4e-26
SQE41200.1|1851790_1852264_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE41201.1|1852268_1853060_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA	NA
SQE41202.1|1853429_1854413_-	Leukotoxin LukD	NA	A0A2H4PQH7	Staphylococcus_phage	95.4	3.9e-180
SQE41203.1|1854414_1855350_-	Leukocidin S subunit lukE	NA	A0A2H4PQI5	Staphylococcus_phage	99.3	2.0e-173
>prophage 10
LS483302	Staphylococcus aureus strain NCTC8726 genome assembly, chromosome: 1	2751084	1937240	2026159	2751084	holin,head,terminase,protease,tRNA,capsid,tail	Staphylococcus_phage(88.31%)	106	NA	NA
SQE41272.1|1937240_1938668_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
SQE41273.1|1938680_1940138_-|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	tRNA	NA	NA	NA	NA
SQE41274.1|1940139_1940442_-|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	tRNA	NA	NA	NA	NA
SQE41275.1|1940808_1942347_+	Sodium/proline symporter	NA	NA	NA	NA	NA
SQE41276.1|1942435_1943635_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA	NA
SQE41277.1|1943647_1945651_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	36.1	4.4e-114
SQE41278.1|1945654_1947847_-	ATP-dependent DNA helicase UvrD/PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
SQE41279.1|1947843_1948536_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA	NA
SQE41280.1|1948707_1949010_-	His repressor	NA	NA	NA	NA	NA
SQE41281.1|1949118_1950414_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
SQE41282.1|1951260_1952427_+	Staphopain A precursor	NA	NA	NA	NA	NA
SQE41283.1|1952457_1952784_+|protease	putative cysteine protease inhibitor (Staphostatin A)	protease	NA	NA	NA	NA
SQE41284.1|1953074_1953248_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE41285.1|1953228_1953831_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA	NA
SQE41286.1|1954096_1954918_-	NH(3)-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	53.1	8.8e-69
SQE41287.1|1954910_1956380_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.3	3.2e-106
SQE41288.1|1956563_1957640_+	nitric-oxide synthase	NA	NA	NA	NA	NA
SQE41289.1|1957659_1958454_+	ACT domain protein	NA	NA	NA	NA	NA
SQE41290.1|1958643_1960206_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA	NA
SQE41291.1|1960410_1961508_-	cell wall surface anchor family protein	NA	U5PWM6	Bacillus_phage	34.6	4.3e-47
SQE41292.1|1961879_1962440_+	Nicotinamidase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
SQE41293.1|1962492_1963422_+	inorganic pyrophosphatase	NA	NA	NA	NA	NA
SQE41294.1|1963839_1965219_+	Aldehyde dehydrogenase	NA	NA	NA	NA	NA
SQE41295.1|1965337_1966366_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
SQE41296.1|1966634_1967036_+	yolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	1.3e-22
SQE41297.1|1967092_1967266_-	exported protein	NA	NA	NA	NA	NA
SQE41298.1|1967644_1968757_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
SQE41299.1|1968813_1969656_-	exported protein	NA	NA	NA	NA	NA
SQE41300.1|1969652_1970210_-	Predicted membrane protein	NA	NA	NA	NA	NA
SQE41301.1|1970269_1970794_-	membrane protein	NA	NA	NA	NA	NA
SQE41302.1|1970914_1971478_+	Thioredoxin	NA	NA	NA	NA	NA
SQE41303.1|1971543_1972284_-	ABC-2 transporter family protein	NA	NA	NA	NA	NA
SQE41304.1|1972283_1973156_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
SQE41305.1|1973152_1973833_-	membrane protein	NA	NA	NA	NA	NA
SQE41306.1|1973833_1974730_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
SQE41307.1|1974726_1975107_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE41308.1|1975364_1975541_-	membrane protein	NA	NA	NA	NA	NA
SQE41309.1|1976080_1977367_+	Aspartate aminotransferase	NA	NA	NA	NA	NA
SQE41310.1|1977637_1979707_-	MHC class II antigen-like protein	NA	NA	NA	NA	NA
SQE41311.1|1980092_1980293_+	phospholipase C	NA	A0A1P8L6A7	Staphylococcus_phage	93.8	8.4e-26
SQE41312.1|1981467_1981818_-	Involved in expression of fibrinogen binding protein, phage associated	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
SQE41313.1|1982329_1982629_-	amidase	NA	A0A1P8L6B4	Staphylococcus_phage	97.0	2.8e-49
SQE41314.1|1983271_1983763_-	Staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
SQE41315.1|1983953_1984709_-	Autolysin	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
SQE41316.1|1984720_1984975_-|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
SQE41317.1|1985512_1985743_-	phage protein	NA	D2JLG2	Staphylococcus_phage	100.0	1.2e-31
SQE41318.1|1985866_1986154_-	phage protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
SQE41319.1|1986200_1986353_-	phage protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
SQE41320.1|1986342_1990128_-	phage minor structural protein	NA	C8CH32	Staphylococcus_phage	99.6	0.0e+00
SQE41321.1|1990143_1991628_-	bacteriophage protein	NA	A0A2I6PDJ0	Staphylococcus_phage	99.6	7.6e-297
SQE41322.1|1991624_1996154_-|tail	TP901 family phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	98.3	0.0e+00
SQE41323.1|1996210_1996348_-	phage protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
SQE41324.1|1996398_1996749_-	phage protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
SQE41325.1|1997064_1997709_-|tail	phage major tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
SQE41326.1|1997709_1998117_-	putative bacteriophage protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
SQE41327.1|1998113_1998518_-	phage protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
SQE41328.1|1998514_1998877_-|head,tail	phage head-tail adaptor	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
SQE41329.1|1998860_1999145_-	Gp6 protein	NA	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
SQE41330.1|1999134_1999419_-|terminase	phage terminase small subunit	terminase	A0A1W6JPL8	Staphylococcus_phage	100.0	2.3e-45
SQE41331.1|1999438_2000659_-|capsid	Phage major capsid protein	capsid	A0A075LYD8	Staphylococcus_phage	98.3	2.6e-226
SQE41332.1|2000606_2001344_-	ATP-dependent endopeptidase clp proteolytic subunit	NA	G4KNQ2	Staphylococcus_phage	99.6	5.2e-129
SQE41333.1|2001327_2002515_-	Portal protein, phage associated	NA	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
SQE41334.1|2002530_2004192_-|terminase	Phage terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
SQE41335.1|2004188_2004533_-	phage protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
SQE41336.1|2004663_2004960_-	phage-associated homing endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	1.3e-51
SQE41337.1|2005194_2005611_-	phage transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
SQE41338.1|2005638_2005842_-	phage protein	NA	R9QT57	Staphylococcus_phage	100.0	6.3e-29
SQE41339.1|2005838_2006489_-	Uncharacterised protein	NA	D2JLD8	Staphylococcus_phage	99.5	3.4e-116
SQE41340.1|2006495_2006648_-	Uncharacterised protein	NA	A0A2I6PDV2	Staphylococcus_phage	100.0	5.4e-17
SQE41341.1|2006647_2006800_-	transcriptional activator RinB family protein	NA	A0A1X9H063	Staphylococcus_phage	100.0	1.7e-18
SQE41342.1|2006799_2007000_-	phage protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
SQE41343.1|2006974_2007163_-	phage protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
SQE41344.1|2007159_2007405_-	phage protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
SQE41345.1|2007441_2007951_-	dUTP pyrophosphatase	NA	A0A1X9H051	Staphylococcus_phage	99.4	2.5e-90
SQE41346.1|2007943_2008192_-	Phage protein	NA	A0A2H4PQK1	Staphylococcus_phage	95.1	4.5e-37
SQE41347.1|2008232_2008481_-	phage family protein	NA	W5R983	Staphylococcus_phage	97.6	1.5e-40
SQE41348.1|2008481_2008853_-	PVL ORF-50-like family protein	NA	A7TWA7	Staphylococcus_phage	99.2	1.3e-56
SQE41349.1|2008865_2009270_-	endodeoxyribonuclease RusA family protein	NA	O80087	Staphylococcus_phage	99.3	1.4e-72
SQE41350.1|2009278_2009497_-	phage protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
SQE41351.1|2009503_2010388_-	Phage protein	NA	S4V6D4	Staphylococcus_phage	96.3	6.2e-137
SQE41352.1|2010417_2010888_-	Single-stranded DNA-binding protein, phage associated	NA	I1W659	Staphylococcus_phage	97.4	5.3e-79
SQE41353.1|2010888_2011374_-	Metallo-beta-lactamase superfamily domain protein in prophage	NA	A0A1P8L6F7	Staphylococcus_phage	99.4	2.7e-86
SQE41354.1|2011586_2012507_-	recombinase, phage RecT family protein	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
SQE41355.1|2012508_2014458_-	Uncharacterized conserved protein	NA	R9QT82	Staphylococcus_phage	99.2	0.0e+00
SQE41356.1|2014460_2014724_-	phage protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
SQE41357.1|2014732_2014993_-	putative phi PVL-like protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
SQE41358.1|2015085_2015247_-	phage protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
SQE41359.1|2015243_2015564_-	Uncharacterized protein conserved in bacteria	NA	A0A1W6JPI1	Staphylococcus_phage	100.0	7.4e-56
SQE41360.1|2015593_2015812_-	phi PV83 orf 10-like protein	NA	A0A068A2A3	Staphylococcus_phage	100.0	8.6e-32
SQE41361.1|2015808_2016087_-	Uncharacterised protein	NA	G4KNN2	Staphylococcus_phage	100.0	3.5e-46
SQE41362.1|2016369_2016630_-	putative phi PVL-like protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
SQE41363.1|2016642_2017392_-	putative phage anti-repressor protein	NA	Q8SDM9	Staphylococcus_phage	99.2	4.9e-135
SQE41364.1|2017448_2017658_+	Uncharacterised protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
SQE41365.1|2017650_2017791_-	phage protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
SQE41366.1|2017805_2018249_-	hypothetical phage-related protein	NA	Q6R853	Staphylococcus_virus	99.3	4.9e-74
SQE41367.1|2018261_2018504_-	phage DNA-binding protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
SQE41368.1|2018667_2019384_+	putative phage repressor protein	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
SQE41369.1|2019395_2020250_+	HIRAN domain-containing protein	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
SQE41370.1|2020323_2020470_+	phage protein	NA	A0A1X9H032	Staphylococcus_phage	100.0	3.3e-19
SQE41371.1|2020466_2020652_+	phage protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
SQE41372.1|2020722_2020905_+	Putative cytosolic protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
SQE41373.1|2020982_2021696_+	phi77 ORF017-like protein	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
SQE41374.1|2021887_2022925_+	DNA integration/recombination/inversion protein	NA	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
SQE41375.1|2022981_2023806_+	phospholipase C	NA	A0A1P8L6H7	Staphylococcus_phage	99.3	6.3e-160
SQE41376.1|2024062_2025082_-	leukocidin-protein 1	NA	A0A2I6PEU3	Staphylococcus_phage	39.8	2.6e-54
SQE41377.1|2025103_2026159_-	Leukocidin S subunit	NA	A0A2I6PER8	Staphylococcus_phage	34.6	6.0e-38
>prophage 11
LS483302	Staphylococcus aureus strain NCTC8726 genome assembly, chromosome: 1	2751084	2464641	2475079	2751084	holin,transposase	Mycoplasma_phage(33.33%)	8	NA	NA
SQE41788.1|2464641_2465337_-|holin	putative glycine betaine/carnitine/choline transport system permease protein	holin	NA	NA	NA	NA
SQE41789.1|2465336_2466278_-|holin	Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	holin	NA	NA	NA	NA
SQE41790.1|2466294_2466930_-|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	holin	NA	NA	NA	NA
SQE41791.1|2466926_2468153_-|holin	glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative	holin	Q6GZ03	Mycoplasma_phage	39.6	8.6e-20
SQE41792.1|2468822_2469422_-	molecular chaperone GroEL	NA	NA	NA	NA	NA
SQE41793.1|2469602_2471240_+	Amino acid permease	NA	NA	NA	NA	NA
SQE41794.1|2471645_2473292_+|transposase	transposase	transposase	A0ZS58	Staphylococcus_virus	99.8	3.9e-294
SQE41795.1|2473711_2475079_+|transposase	IS1272 transposase, putative	transposase	A0A146ICT8	Staphylococcus_phage	95.5	1.4e-228
