The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483307	Streptococcus pyogenes strain NCTC5163 genome assembly, chromosome: 1	1921448	36227	47345	1921448	transposase	Synechococcus_phage(33.33%)	7	NA	NA
SQE54526.1|36227_40001_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.4	3.0e-39
SQE54531.1|40234_41689_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	3.7e-54
SQE54535.1|41716_42739_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	42.0	1.4e-63
SQE54537.1|42906_43461_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	2.6e-24
SQE54539.1|43644_45192_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	51.3	3.4e-45
SQE54542.1|45261_46125_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE54545.1|46220_47345_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
>prophage 2
LS483307	Streptococcus pyogenes strain NCTC5163 genome assembly, chromosome: 1	1921448	333228	339260	1921448		Streptococcus_phage(100.0%)	9	NA	NA
SQE55243.1|333228_333864_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.0e-65
SQE55245.1|333881_334757_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
SQE55247.1|334775_335015_+	Tpl protein	NA	NA	NA	NA	NA
SQE55249.1|335418_335742_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQE55251.1|335746_336610_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.3	1.9e-114
SQE55253.1|336636_337029_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQE55254.1|337075_337705_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQE55258.1|338002_338359_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.8e-39
SQE55260.1|338432_339260_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.3	5.8e-129
>prophage 3
LS483307	Streptococcus pyogenes strain NCTC5163 genome assembly, chromosome: 1	1921448	347607	390361	1921448	transposase,tRNA,protease,bacteriocin	Mycobacterium_phage(18.18%)	49	NA	NA
SQE55268.1|347607_349605_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.0	1.3e-86
SQE55270.1|350099_351113_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.4	5.5e-97
SQE55273.1|351116_351605_+	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
SQE55275.1|351571_353752_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.2	9.5e-171
SQE55277.1|353955_354708_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQE55280.1|355164_355617_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQE55282.1|355804_356056_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQE55284.1|356150_356852_-	phage protein	NA	NA	NA	NA	NA
SQE55286.1|357530_357863_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55288.1|357902_358028_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55290.1|358164_358863_-	exotoxin J	NA	NA	NA	NA	NA
SQE55292.1|359131_359788_-	phage protein	NA	NA	NA	NA	NA
SQE55294.1|360147_360384_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQE55296.1|360376_361075_+	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.2	1.2e-10
SQE55297.1|361150_362110_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQE55303.1|362442_363780_+	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQE55305.1|363952_365335_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.0	8.5e-32
SQE55306.1|365368_365923_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQE55309.1|365922_366174_+	membrane protein	NA	NA	NA	NA	NA
SQE55311.1|366193_366889_+	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQE55314.1|367039_367381_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55317.1|367479_368127_-	metalloregulator ScaR	NA	NA	NA	NA	NA
SQE55319.1|368272_369205_+	manganese-binding protein	NA	NA	NA	NA	NA
SQE55323.1|369268_369994_+	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.1e-17
SQE55325.1|369994_370849_+	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQE55327.1|370995_371802_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.9e-20
SQE55329.1|372018_374424_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
SQE55331.1|374494_374848_-	integral membrane protein	NA	NA	NA	NA	NA
SQE55333.1|375091_375517_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQE55335.1|375622_376312_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQE55338.1|376636_377365_+	uridylate kinase	NA	NA	NA	NA	NA
SQE55339.1|377393_377951_+	ribosome recycling factor	NA	NA	NA	NA	NA
SQE55341.1|378059_378917_+	s1 RNA binding domain	NA	NA	NA	NA	NA
SQE55343.1|378989_379499_+	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQE55346.1|379495_379711_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQE55348.1|379866_381036_+	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.5e-16
SQE55350.1|381349_383122_+	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQE55352.1|383280_384333_+	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQE55354.1|384378_384954_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQE55356.1|385112_385610_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQE55358.1|385590_385998_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQE55360.1|386117_387014_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQE55362.1|387033_387510_+	phosphohydrolase	NA	NA	NA	NA	NA
SQE55364.1|387815_388070_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55367.1|388467_388713_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQE55369.1|388727_388910_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQE55372.1|389247_389397_-|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQE55374.1|389393_389816_-|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
SQE55376.1|390133_390361_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 4
LS483307	Streptococcus pyogenes strain NCTC5163 genome assembly, chromosome: 1	1921448	526885	558222	1921448	transposase,tRNA,bacteriocin	Streptococcus_phage(50.0%)	29	NA	NA
SQE55729.1|526885_528232_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.1e-55
SQE55731.1|528645_529536_+	P-loop ATPase protein family protein	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
SQE55732.1|529532_530510_+	transporter	NA	A1IMD5	Streptococcus_phage	74.2	1.2e-138
SQE55734.1|530506_531418_+	sporulation Regulator WhiA C terminal domain-containing protein	NA	Q7AWZ3	Streptococcus_phage	64.0	1.1e-104
SQE55736.1|531745_532159_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55738.1|532456_532702_+|transposase	truncated transposase	transposase	NA	NA	NA	NA
SQE55740.1|532659_533043_+|transposase	transposase	transposase	Q9MBM9	Staphylococcus_prophage	39.7	3.9e-19
SQE55742.1|533219_534353_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE55743.1|534357_534579_+	hupothetical protein	NA	NA	NA	NA	NA
SQE55745.1|534799_535453_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	33.0	4.0e-24
SQE55747.1|536285_537704_+	dipeptidase	NA	NA	NA	NA	NA
SQE55749.1|537855_539403_+	high-affinity zinc uptake system protein	NA	NA	NA	NA	NA
SQE55750.1|539553_540276_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE55752.1|540295_541495_+	tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA	NA
SQE55753.1|541591_541852_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQE55754.1|541966_542908_-	DHH family protein	NA	NA	NA	NA	NA
SQE55755.1|543301_543751_+	flavodoxin	NA	NA	NA	NA	NA
SQE55756.1|543925_544210_+	chorismate mutase	NA	NA	NA	NA	NA
SQE55757.1|544202_545465_+	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	50.3	1.2e-93
SQE55758.1|545579_545927_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQE55759.1|546941_547511_+	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA	NA
SQE55760.1|547511_549464_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	46.2	8.9e-144
SQE55761.1|549831_551556_+	septation ring formation regulator	NA	NA	NA	NA	NA
SQE55762.1|551687_552146_-	hypothetical cytosolic protein	NA	W6LLD2	Streptococcus_phage	39.1	1.8e-18
SQE55763.1|552378_553686_+	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
SQE55764.1|554455_554617_+|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
SQE55765.1|554838_555789_+	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQE55766.1|555785_556844_+|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
SQE55767.1|556863_558222_+|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
>prophage 5
LS483307	Streptococcus pyogenes strain NCTC5163 genome assembly, chromosome: 1	1921448	618792	629395	1921448		Streptococcus_phage(57.14%)	9	NA	NA
SQE55822.1|618792_621003_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.9	8.5e-268
SQE55823.1|621110_622274_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQE55824.1|622270_622957_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQE55825.1|623050_624217_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQE55826.1|624277_624619_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
SQE55827.1|624839_626192_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.2	7.0e-31
SQE55828.1|626279_627548_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQE55829.1|627577_628018_-	membrane protein	NA	NA	NA	NA	NA
SQE55830.1|628252_629395_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	8.3e-25
>prophage 6
LS483307	Streptococcus pyogenes strain NCTC5163 genome assembly, chromosome: 1	1921448	656351	691342	1921448	transposase,tRNA,head,protease	Bacillus_phage(25.0%)	35	NA	NA
SQE55881.1|656351_657083_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQE55884.1|657082_658075_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
SQE55886.1|658252_659311_+	regulatory protein	NA	NA	NA	NA	NA
SQE55888.1|659323_660247_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQE55890.1|660547_661216_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.7	4.8e-17
SQE55894.1|661212_662124_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQE55896.1|662120_664067_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQE55898.1|664165_664759_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.5e-11
SQE55900.1|664909_665617_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	1.9e-11
SQE55902.1|665772_665892_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQE55905.1|666188_666863_-	exotoxin J	NA	NA	NA	NA	NA
SQE55907.1|667027_667792_-	Exotoxin type C precursor	NA	Q938J1	Temperate_phage	81.6	4.9e-114
SQE55910.1|667951_668815_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE55912.1|668862_669888_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQE55916.1|670391_670568_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQE55918.1|670795_671176_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE55920.1|671175_672024_+	degV family protein	NA	NA	NA	NA	NA
SQE55923.1|672148_673357_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	5.3e-38
SQE55925.1|673353_675231_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.5	8.7e-64
SQE55928.1|676122_676533_+	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQE55931.1|676613_678008_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQE55934.1|678058_678625_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQE55937.1|678844_679495_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQE55939.1|679497_680166_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQE55941.1|680174_681407_+	two component system histidine kinase	NA	NA	NA	NA	NA
SQE55944.1|681700_682579_+	mevalonate kinase	NA	NA	NA	NA	NA
SQE55946.1|682560_683505_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQE55948.1|683497_684511_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQE55950.1|684497_685487_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQE55952.1|685716_686994_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQE55954.1|686980_688156_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQE55956.1|688376_689216_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQE55959.1|689295_689793_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	1.1e-10
SQE55962.1|689812_689983_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQE55964.1|690112_691342_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	1.7e-137
>prophage 7
LS483307	Streptococcus pyogenes strain NCTC5163 genome assembly, chromosome: 1	1921448	724476	777928	1921448	tail,terminase,portal,tRNA,integrase	Streptococcus_phage(78.85%)	68	738779:738827	779025:779073
SQE56035.1|724476_725376_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQE56037.1|725448_726687_+	GTP-binding protein HflX	NA	NA	NA	NA	NA
SQE56039.1|726670_727315_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
SQE56041.1|727329_728259_+	ribonuclease Z	NA	NA	NA	NA	NA
SQE56043.1|728258_729023_+	short chain dehydrogenase	NA	NA	NA	NA	NA
SQE56045.1|729019_731230_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.2	6.6e-71
SQE56047.1|731379_731898_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	42.4	3.9e-30
SQE56049.1|731978_732662_+	DNA replication protein DnaD	NA	Q938N2	Temperate_phage	36.8	2.2e-09
SQE56052.1|732658_733315_+	endonuclease III	NA	NA	NA	NA	NA
SQE56054.1|733386_734073_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SQE56056.1|734062_734851_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQE56058.1|734890_735997_+	FAD dependent oxidoreductase family protein	NA	NA	NA	NA	NA
SQE56060.1|736054_736924_+	glucose-1-phosphate thymidyl transferase	NA	K7QKA7	Escherichia_phage	64.6	2.4e-101
SQE56062.1|736923_737517_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
SQE56065.1|737760_738801_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.1e-68
738779:738827	attL	AAACTCAAGAAGTGATTAAATAAAACATTAAAGAACCTTGTCATATCAA	NA	NA	NA	NA
SQE56067.1|738883_740023_-|integrase	phage integrase	integrase	A1EAB7	Streptococcus_phage	56.3	1.2e-119
SQE56069.1|740150_740417_-	phage protein	NA	NA	NA	NA	NA
SQE56071.1|740428_740815_-	phage protein	NA	M1PFJ2	Streptococcus_phage	55.5	3.3e-34
SQE56073.1|740817_741168_-	DNA-binding phage protein	NA	C5J980	Streptococcus_phage	62.6	1.1e-33
SQE56075.1|741475_741691_+	phage protein	NA	M1Q1B4	Streptococcus_phage	79.7	1.2e-25
SQE56077.1|741701_741968_+	phage protein	NA	A0A1S5SC19	Streptococcus_phage	66.3	1.1e-23
SQE56079.1|741902_742709_-	protein Ymh	NA	A0A1S5SBU1	Streptococcus_phage	82.1	7.9e-123
SQE56082.1|742850_743090_-	phage protein	NA	NA	NA	NA	NA
SQE56084.1|743256_743442_+	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQE56086.1|743519_743831_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	80.4	8.2e-44
SQE56088.1|743832_744003_+	phage protein	NA	A7J273	Streptococcus_phage	89.3	1.2e-20
SQE56090.1|743995_744199_+	phage protein	NA	NA	NA	NA	NA
SQE56092.1|744195_744582_+	phage protein	NA	A7J274	Streptococcus_phage	89.0	3.3e-58
SQE56095.1|744578_744716_+	phage protein	NA	NA	NA	NA	NA
SQE56096.1|744725_745076_+	phage protein	NA	NA	NA	NA	NA
SQE56098.1|745072_745276_+	phage protein	NA	A7J276	Streptococcus_phage	98.5	1.6e-32
SQE56101.1|745364_745664_+	phage protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
SQE56103.1|745663_746821_+	phage protein	NA	A7J278	Streptococcus_phage	97.9	8.8e-216
SQE56105.1|746835_747393_+	phage protein	NA	D2J040	Enterococcus_phage	58.5	3.3e-51
SQE56107.1|747435_749358_+	phage DNA polymerase	NA	A7J280	Streptococcus_phage	99.1	0.0e+00
SQE56109.1|749362_751747_+	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	94.8	4.8e-277
SQE56110.1|752132_752408_+	phage protein	NA	A7J283	Streptococcus_phage	97.8	7.7e-46
SQE56111.1|752404_753727_+	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.7	5.1e-252
SQE56112.1|753727_753898_+	phage protein	NA	A7J285	Streptococcus_phage	92.3	9.0e-21
SQE56113.1|753890_754163_+	phage membrane protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
SQE56114.1|754165_754312_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56115.1|754295_754712_+	phage protein	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
SQE56116.1|754801_755254_+|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
SQE56117.1|755243_756521_+|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	99.8	3.1e-246
SQE56118.1|756536_758069_+|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.8	4.5e-292
SQE56119.1|758028_759477_+	phage protein	NA	A7J293	Streptococcus_phage	99.8	1.2e-278
SQE56120.1|759576_759693_+	phage membrane protein	NA	A7J294	Streptococcus_phage	100.0	2.0e-08
SQE56121.1|759697_759964_+	putative phage associated protein	NA	Q938K9	Temperate_phage	96.6	2.9e-37
SQE56122.1|760131_760701_+	phage protein	NA	A7J296	Streptococcus_phage	100.0	1.9e-83
SQE56123.1|760713_761601_+	phage protein	NA	A7J297	Streptococcus_phage	100.0	2.1e-161
SQE56124.1|761612_761969_+	phage protein	NA	A7J298	Streptococcus_phage	100.0	4.6e-59
SQE56125.1|761979_762258_+	phage protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
SQE56126.1|762254_762599_+	phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
SQE56127.1|762602_762962_+	phage protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
SQE56128.1|762973_763573_+|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
SQE56129.1|763626_764082_+	phage protein	NA	A7J2A3	Streptococcus_phage	98.7	1.2e-75
SQE56130.1|764156_764390_+	phage protein	NA	A7J2A4	Streptococcus_phage	97.4	6.4e-33
SQE56131.1|764404_768787_+|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	74.0	1.3e-224
SQE56132.1|768798_769641_+	phage protein	NA	A7J2A6	Streptococcus_phage	97.5	3.9e-157
SQE56133.1|769650_771633_+	phage protein	NA	A7J2A7	Streptococcus_phage	93.9	0.0e+00
SQE56134.1|771632_772742_+	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	71.3	1.3e-120
SQE56135.1|772751_774770_+	Phage infection protein	NA	Q938J9	Temperate_phage	58.8	3.9e-126
SQE56136.1|774778_774940_+	phage protein	NA	NA	NA	NA	NA
SQE56137.1|774942_775554_+	phage protein	NA	Q938J7	Temperate_phage	91.1	8.8e-82
SQE56138.1|775564_775885_+	Uncharacterised protein	NA	A3F663	Streptococcus_phage	99.1	1.2e-50
SQE56139.1|775897_776230_+	N-acetylmuramoyl-L-alanine amidase	NA	A3F664	Streptococcus_phage	98.2	2.8e-50
SQE56140.1|776231_776984_+	phage-associated cell wall hydrolase	NA	A3F665	Streptococcus_phage	96.8	1.0e-140
SQE56141.1|777148_777928_+	exotoxin I precursor	NA	A0A075M4C7	Staphylococcus_phage	32.3	4.6e-27
779025:779073	attR	AAACTCAAGAAGTGATTAAATAAAACATTAAAGAACCTTGTCATATCAA	NA	NA	NA	NA
>prophage 8
LS483307	Streptococcus pyogenes strain NCTC5163 genome assembly, chromosome: 1	1921448	972535	1104278	1921448	tail,holin,terminase,transposase,head,portal,tRNA,capsid,integrase	Streptococcus_phage(61.98%)	177	1006081:1006097	1113674:1113690
SQE56535.1|972535_973420_-|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
SQE56537.1|973535_974876_-	Serine/threonine-protein kinase MRCK beta	NA	NA	NA	NA	NA
SQE56539.1|974972_975929_-	membrane protein	NA	NA	NA	NA	NA
SQE56542.1|975939_976536_-	type I restriction-modification system specificty subunit	NA	NA	NA	NA	NA
SQE56544.1|976627_979264_-	permease family protein	NA	NA	NA	NA	NA
SQE56546.1|979278_979980_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.5	1.7e-36
SQE56549.1|980097_980640_+	bacterial regulatory s, tetR family protein	NA	NA	NA	NA	NA
SQE56552.1|980782_981424_-	bacterial regulatory s, gntR family protein	NA	NA	NA	NA	NA
SQE56555.1|981586_982075_-	general stress protein, Gls24 family	NA	NA	NA	NA	NA
SQE56557.1|982085_982286_-	csbD-like family protein	NA	J7KJ36	Streptococcus_phage	51.5	2.3e-07
SQE56560.1|982326_982866_-	response regulator	NA	NA	NA	NA	NA
SQE56562.1|982878_983067_-	membrane protein	NA	NA	NA	NA	NA
SQE56565.1|983077_983665_-	membrane protein	NA	NA	NA	NA	NA
SQE56567.1|983725_983974_-	transglycosylase associated family protein	NA	NA	NA	NA	NA
SQE56570.1|984336_986655_-	DNA helicase II / ATP-dependent DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.3	7.1e-132
SQE56572.1|987184_988507_+	amino acid symporter	NA	NA	NA	NA	NA
SQE56575.1|988626_989862_+	cation diffusion facilitator transporter family protein	NA	NA	NA	NA	NA
SQE56577.1|990231_991005_-	protein B	NA	NA	NA	NA	NA
SQE56580.1|991373_992210_-	polar amino acid ABC uptake transporter substrate binding protein	NA	NA	NA	NA	NA
SQE56582.1|992225_992855_-	histidine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	1.3e-27
SQE56585.1|992864_993506_-	histidine transporter permease	NA	NA	NA	NA	NA
SQE56587.1|993612_993948_-	phosphonoacetate hydrolase	NA	NA	NA	NA	NA
SQE56589.1|994143_995958_-	glucosamine-fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.7	1.2e-97
SQE56591.1|996133_996691_-	signal peptidase I	NA	NA	NA	NA	NA
SQE56593.1|996908_998411_-	pyruvate kinase	NA	NA	NA	NA	NA
SQE56596.1|998473_999487_-	6-phosphofructokinase	NA	NA	NA	NA	NA
SQE56598.1|999566_1002677_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.8	5.4e-119
SQE56600.1|1002861_1003233_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE56602.1|1003232_1003931_+	ABC transporter family protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
SQE56604.1|1003940_1004726_+	ABC transporter permease protein	NA	NA	NA	NA	NA
SQE56606.1|1004852_1005467_-	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
SQE56608.1|1006057_1006246_-	paratox	NA	A3F673	Streptococcus_phage	83.1	1.3e-20
1006081:1006097	attL	CCATCACTTCTTCCACT	NA	NA	NA	NA
SQE56610.1|1006483_1007284_+	streptodornase	NA	NA	NA	NA	NA
SQE56612.1|1007554_1007989_+	phage membrane protein	NA	NA	NA	NA	NA
SQE56615.1|1008058_1009264_-	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	84.3	1.7e-206
SQE56617.1|1009260_1009371_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	94.4	3.0e-09
SQE56619.1|1009379_1009607_-	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQE56621.1|1009603_1009879_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQE56624.1|1009888_1010506_-	phage protein	NA	Q938J7	Temperate_phage	89.3	2.7e-78
SQE56627.1|1010508_1010670_-	phage protein	NA	NA	NA	NA	NA
SQE56629.1|1010683_1012594_-	phage infection protein	NA	Q938J9	Temperate_phage	67.8	1.3e-120
SQE56631.1|1012606_1013614_-	phage hyaluronidase	NA	A7J2A8	Streptococcus_phage	71.7	1.4e-137
SQE56633.1|1013610_1015662_-	phage protein	NA	A3F656	Streptococcus_phage	84.6	0.0e+00
SQE56635.1|1015658_1016438_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	55.5	1.9e-68
SQE56637.1|1016469_1019736_-	tape measure domain protein	NA	U6E979	Streptococcus_phage	30.4	1.6e-04
SQE56639.1|1019750_1020080_-	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	41.5	2.0e-11
SQE56641.1|1020121_1020481_-	phage protein	NA	D7RWD6	Brochothrix_phage	44.5	4.3e-20
SQE56643.1|1020533_1021181_-|tail	phage major tail protein	tail	D7RWD5	Brochothrix_phage	52.0	1.4e-40
SQE56645.1|1021190_1021580_-	phage protein	NA	Q38611	Lactococcus_phage	68.2	3.5e-44
SQE56647.1|1021576_1021942_-	phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	7.7e-17
SQE56649.1|1021922_1022231_-	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
SQE56651.1|1022227_1022581_-	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
SQE56654.1|1022594_1022837_-	phage protein	NA	NA	NA	NA	NA
SQE56656.1|1022846_1023923_-|head	phage head protein	head	A0A2H4J022	uncultured_Caudovirales_phage	56.0	5.5e-103
SQE56658.1|1023922_1024303_-	structural protein	NA	A0A0K2CNR0	Brevibacillus_phage	37.1	5.8e-07
SQE56660.1|1024312_1024846_-	phage protein	NA	A0A141E0S7	Streptococcus_phage	83.9	1.4e-14
SQE56662.1|1024980_1025247_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	84.1	1.7e-34
SQE56665.1|1025306_1025486_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56667.1|1025476_1027102_-|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	U6E9F1	Streptococcus_phage	43.8	1.1e-46
SQE56669.1|1027082_1028585_-|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.3	4.1e-141
SQE56671.1|1028596_1029904_-|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.2	5.9e-184
SQE56673.1|1029881_1030313_-|terminase	phage terminase small subunit	terminase	A0A1S5SCD2	Streptococcus_phage	72.6	1.8e-49
SQE56675.1|1030881_1031322_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	97.3	7.2e-78
SQE56678.1|1031592_1032228_-	phage protein	NA	L0P368	Streptococcus_phage	67.9	5.5e-87
SQE56680.1|1032227_1032629_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56682.1|1032641_1032842_-	Uncharacterised protein	NA	A0A0E3T873	Gordonia_phage	45.3	4.6e-08
SQE56684.1|1032846_1033131_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
SQE56686.1|1033127_1033298_-	phage protein	NA	Q938M0	Temperate_phage	100.0	8.5e-11
SQE56688.1|1033294_1033708_-	phage protein	NA	Q938M1	Temperate_phage	62.4	4.6e-34
SQE56690.1|1033691_1033979_-	phage protein	NA	J7KDH9	Streptococcus_phage	75.0	5.1e-32
SQE56693.1|1033978_1034224_-	phage protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	93.8	4.8e-39
SQE56695.1|1034220_1034577_-	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	97.5	2.1e-59
SQE56697.1|1034573_1035014_-	phage protein	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.9	4.5e-80
SQE56700.1|1035222_1035642_-	single-stranded DNA-binding protein ssb	NA	Q938M7	Temperate_phage	97.1	3.1e-70
SQE56702.1|1035634_1036309_-	Single-stranded DNA-binding protein	NA	Q938M8	Temperate_phage	97.3	2.0e-103
SQE56704.1|1036309_1036792_-	phage protein	NA	Q938M9	Temperate_phage	98.8	1.6e-49
SQE56706.1|1036812_1037067_-	phage protein	NA	Q938N0	Temperate_phage	97.6	1.8e-41
SQE56709.1|1037047_1037404_-	phage protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	99.2	3.0e-50
SQE56710.1|1037414_1037552_-	phage protein	NA	J7KBQ4	Streptococcus_phage	75.7	3.5e-07
SQE56711.1|1037551_1038394_-	phage DNA replication protein	NA	A0A1S5S7L9	Streptococcus_phage	40.7	1.3e-48
SQE56712.1|1038403_1039306_-	DNA replication protein dnaD	NA	J7KBV5	Streptococcus_phage	87.5	3.0e-118
SQE56713.1|1039319_1039634_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	94.2	5.9e-50
SQE56714.1|1039649_1039784_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	95.5	9.6e-18
SQE56715.1|1039780_1040077_-	phage protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	84.7	2.3e-43
SQE56716.1|1040154_1040340_-	phage protein	NA	J7KH19	Streptococcus_phage	68.9	4.6e-18
SQE56717.1|1040483_1040702_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56718.1|1040687_1040819_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56719.1|1040838_1041045_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56720.1|1041231_1041441_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56721.1|1041550_1041751_-	helix-turn-helix family protein	NA	A0A141E205	Streptococcus_phage	59.6	2.7e-08
SQE56722.1|1041848_1042532_+	phage protein	NA	A0A1X9I5M7	Streptococcus_phage	59.4	1.2e-71
SQE56723.1|1042489_1042624_-	Uncharacterised protein	NA	X2KTZ3	Streptococcus_phage	79.5	3.4e-07
SQE56725.1|1042659_1042818_-	Uncharacterised protein	NA	J7KH24	Streptococcus_phage	92.3	3.4e-22
SQE56728.1|1042913_1043015_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56733.1|1043173_1044010_+	phage transcriptional repressor	NA	A0A097PBE5	Streptococcus_pyogenes_phage	88.0	1.8e-125
SQE56736.1|1044022_1044832_+	phage protein	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
SQE56738.1|1045081_1046170_+|integrase	integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	99.4	4.2e-204
SQE56741.1|1046427_1046610_-	phage protein	NA	A3F673	Streptococcus_phage	71.7	1.0e-17
SQE56744.1|1046808_1047018_-	repressor C1	NA	A3F668	Streptococcus_phage	100.0	1.2e-30
SQE56747.1|1047171_1047318_+	Uncharacterised protein	NA	A3F667	Streptococcus_phage	97.9	4.0e-17
SQE56749.1|1047458_1047710_+	Uncharacterised protein	NA	A3F666	Streptococcus_phage	96.4	2.8e-42
SQE56751.1|1047973_1048213_+	Phage protein	NA	NA	NA	NA	NA
SQE56753.1|1048270_1048627_+	phage protein	NA	NA	NA	NA	NA
SQE56755.1|1048742_1049951_-	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	87.5	2.9e-214
SQE56758.1|1049947_1050058_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.2	1.8e-09
SQE56760.1|1050066_1050294_-	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	7.6e-31
SQE56762.1|1050290_1050563_-	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQE56765.1|1050574_1051207_-	phage protein	NA	Q938J7	Temperate_phage	49.5	2.0e-44
SQE56767.1|1051209_1051638_-	phage protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
SQE56770.1|1051649_1053554_-	Phage infection protein	NA	Q938J9	Temperate_phage	83.7	1.1e-210
SQE56772.1|1053563_1054571_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	64.9	9.9e-115
SQE56774.1|1054567_1056619_-	phage protein	NA	A3F656	Streptococcus_phage	85.3	0.0e+00
SQE56777.1|1056615_1057386_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	87.5	2.1e-128
SQE56779.1|1057398_1061499_-|tail	tail protein	tail	A3F654	Streptococcus_phage	68.4	0.0e+00
SQE56782.1|1061542_1061641_-	Uncharacterised protein	NA	A3F653	Streptococcus_phage	96.9	7.0e-10
SQE56786.1|1061724_1062027_-	Uncharacterised protein	NA	A3F652	Streptococcus_phage	96.0	1.8e-48
SQE56788.1|1062119_1062704_-|tail	major tail protein - phage associated	tail	A3F651	Streptococcus_phage	90.2	3.1e-92
SQE56790.1|1062715_1063096_-	Uncharacterised protein	NA	A3F650	Streptococcus_phage	99.2	7.4e-63
SQE56792.1|1063088_1063487_-	Uncharacterised protein	NA	A3F649	Streptococcus_phage	100.0	2.9e-70
SQE56794.1|1063488_1063851_-	Uncharacterised protein	NA	A3F648	Streptococcus_phage	97.5	1.1e-60
SQE56797.1|1063843_1064152_-	Uncharacterised protein	NA	A3F647	Streptococcus_phage	99.0	1.2e-47
SQE56800.1|1064151_1064325_-	Uncharacterised protein	NA	A3F646	Streptococcus_phage	94.7	6.4e-22
SQE56802.1|1064338_1065472_-|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A3F645	Streptococcus_phage	96.8	3.2e-202
SQE56804.1|1065488_1066295_-	scaffolding protein	NA	A3F644	Streptococcus_phage	98.1	4.6e-147
SQE56806.1|1066275_1067463_-|portal	HK97 family phage portal protein	portal	A3F643	Streptococcus_phage	96.2	5.6e-218
SQE56809.1|1067615_1067828_-	Uncharacterised protein	NA	A3F642	Streptococcus_phage	97.1	1.4e-34
SQE56812.1|1067830_1069561_-|terminase	putative phage terminase, large subunit	terminase	A3F641	Streptococcus_phage	97.0	0.0e+00
SQE56814.1|1069573_1069891_-	Uncharacterised protein	NA	A3F640	Streptococcus_phage	99.0	3.9e-49
SQE56817.1|1070031_1070337_-	HNH endonuclease	NA	A3F639	Streptococcus_phage	96.0	3.8e-54
SQE56820.1|1070329_1070716_-	Uncharacterised protein	NA	A3F638	Streptococcus_phage	93.0	1.4e-64
SQE56822.1|1070741_1070945_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56825.1|1071002_1071296_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56827.1|1071449_1072025_-	phage associated recombinase	NA	A3F636	Streptococcus_phage	99.5	7.4e-107
SQE56830.1|1072184_1072586_-	phage 31 late promoter transcriptional activator	NA	A3F635	Streptococcus_phage	100.0	2.7e-71
SQE56833.1|1072600_1073428_-	B-cell receptor associated protein-like protein	NA	A3F634	Streptococcus_phage	100.0	1.3e-117
SQE56836.1|1073430_1073769_-	immunity repressor protein - phage associated	NA	A3F633	Streptococcus_phage	92.9	1.1e-54
SQE56838.1|1073765_1074047_-	Uncharacterised protein	NA	A3F632	Streptococcus_phage	92.2	4.5e-33
SQE56840.1|1074061_1074454_-	single strand binding protein	NA	A0A1P8VVS8	Streptococcus_phage	70.3	6.9e-48
SQE56842.1|1074450_1074672_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56845.1|1074668_1075154_-	phage protein	NA	A0A1S5S9L5	Streptococcus_phage	41.4	5.6e-23
SQE56856.1|1075158_1075791_-	phage protein	NA	L0P368	Streptococcus_phage	65.7	5.9e-81
SQE56858.1|1075792_1076062_-	phage membrane protein	NA	A7J287	Streptococcus_phage	80.9	1.4e-28
SQE56863.1|1076058_1076229_-	phage protein	NA	Q938M0	Temperate_phage	55.4	2.7e-09
SQE56865.1|1076225_1076669_-	phage protein	NA	A0A1C9LX52	Streptococcus_phage	55.0	1.6e-32
SQE56868.1|1076685_1076811_-	phage protein	NA	NA	NA	NA	NA
SQE56871.1|1076824_1077052_-	phage protein	NA	C5J991	Streptococcus_phage	49.3	9.3e-13
SQE56873.1|1077051_1077864_-	phage DNA replication protein	NA	A0A1P8VVV9	Streptococcus_phage	77.6	5.2e-122
SQE56875.1|1077863_1078625_-	dnaD and phage-associated domain protein	NA	A0A220GFI5	Streptococcus_phage	56.1	9.1e-28
SQE56878.1|1078617_1079958_-	DNA polymerase III delta prime subunit	NA	A0A1P8VVQ6	Streptococcus_phage	84.7	7.1e-209
SQE56880.1|1079944_1080133_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56882.1|1080253_1080445_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56884.1|1080537_1080795_-	phage protein	NA	A3F618	Streptococcus_phage	98.8	5.4e-41
SQE56886.1|1080868_1081588_-	antirepressor - phage associated	NA	A3F617	Streptococcus_phage	78.7	4.6e-106
SQE56888.1|1081639_1082140_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56890.1|1082259_1082394_-	Uncharacterised protein	NA	A3F616	Streptococcus_phage	95.5	2.4e-16
SQE56892.1|1082467_1082680_-	phage protein	NA	M1Q1B4	Streptococcus_phage	52.9	1.7e-13
SQE56894.1|1082714_1082990_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56897.1|1083278_1083629_+	repressor - phage associated	NA	A0A1S5SAD3	Streptococcus_phage	63.5	1.2e-35
SQE56899.1|1083632_1084025_+	phage protein	NA	A3F612	Streptococcus_phage	68.7	2.2e-38
SQE56901.1|1084035_1084776_+	phage protein	NA	A3F611	Streptococcus_phage	100.0	1.6e-130
SQE56904.1|1085086_1086283_+|integrase	phage associated integrase	integrase	A3F610	Streptococcus_phage	99.0	3.9e-227
SQE56906.1|1086478_1087099_+	phage protein	NA	NA	NA	NA	NA
SQE56908.1|1087355_1089620_-	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
SQE56910.1|1089654_1091148_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
SQE56913.1|1091262_1092282_-	LacI family transcription regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	1.3e-16
SQE56915.1|1092525_1093773_+	maltose/maltodextrin-binding protein	NA	NA	NA	NA	NA
SQE56917.1|1094046_1095408_+	maltose/maltodextrin ABC transport system permease	NA	NA	NA	NA	NA
SQE56919.1|1095407_1096244_+	maltose transport system permease	NA	NA	NA	NA	NA
SQE56922.1|1096617_1096824_+|transposase	truncated transposase	transposase	NA	NA	NA	NA
SQE56924.1|1096820_1097204_+|transposase	transposase	transposase	Q9MBM9	Staphylococcus_prophage	40.5	5.1e-19
SQE56926.1|1097717_1098701_-	alpha/beta fold family hydrolase	NA	NA	NA	NA	NA
SQE56929.1|1098731_1099982_-	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA	NA
SQE56931.1|1099974_1100214_-	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
SQE56933.1|1100231_1101488_-	Protein dltB	NA	NA	NA	NA	NA
SQE56936.1|1101484_1103023_-	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	28.1	3.5e-42
SQE56939.1|1103034_1103178_-	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA	NA
SQE56941.1|1103414_1104278_-|transposase	transposase	transposase	NA	NA	NA	NA
1113674:1113690	attR	CCATCACTTCTTCCACT	NA	NA	NA	NA
>prophage 9
LS483307	Streptococcus pyogenes strain NCTC5163 genome assembly, chromosome: 1	1921448	1119982	1169763	1921448	transposase,tRNA,protease	Bacillus_phage(23.08%)	46	NA	NA
SQE56974.1|1119982_1120498_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE56986.1|1120518_1121325_+|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	50.4	8.3e-64
SQE56988.1|1121624_1122497_-	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQE56989.1|1122720_1124031_+	membrane protein	NA	NA	NA	NA	NA
SQE56991.1|1124108_1124354_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE56993.1|1124832_1125156_+|transposase	transposase	transposase	A0A1P8CWQ3	Bacillus_phage	46.9	6.1e-18
SQE56995.1|1125172_1125904_-	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQE56997.1|1126018_1126384_+	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQE56999.1|1126503_1127724_-	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQE57001.1|1128097_1129582_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQE57002.1|1129686_1130088_-	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQE57004.1|1130172_1130685_-	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	95.9	9.6e-90
SQE57006.1|1130843_1130954_-	phosphorylase Pnp/Udp family protein	NA	NA	NA	NA	NA
SQE57008.1|1130992_1132348_-|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	D0R096	Streptococcus_phage	98.0	3.1e-252
SQE57010.1|1132429_1133881_-	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQE57011.1|1134088_1134580_-	shikimate kinase	NA	NA	NA	NA	NA
SQE57014.1|1134572_1135856_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQE57016.1|1135966_1136932_-	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQE57018.1|1136933_1137794_-	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQE57020.1|1137808_1139092_-	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQE57022.1|1139100_1139643_-	acetyltransferase family protein	NA	NA	NA	NA	NA
SQE57026.1|1139880_1140786_-	protein G-related alpha 2M-bindingprotein	NA	NA	NA	NA	NA
SQE57028.1|1141143_1142403_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQE57031.1|1142576_1143773_-	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	9.9e-138
SQE57034.1|1144309_1146688_-	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
SQE57036.1|1146891_1147833_+	biotin-protein ligase	NA	NA	NA	NA	NA
SQE57038.1|1148095_1149766_-	DNA polymerase III subunits gamma and tau	NA	E7DN81	Pneumococcus_phage	40.6	6.6e-47
SQE57041.1|1149765_1150263_-	GAF domain-containing protein	NA	NA	NA	NA	NA
SQE57043.1|1150407_1151217_+	membrane protein	NA	NA	NA	NA	NA
SQE57045.1|1151269_1151533_-	membrane protein	NA	NA	NA	NA	NA
SQE57047.1|1151612_1152239_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	2.2e-35
SQE57049.1|1152336_1153422_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.6e-33
SQE57051.1|1153532_1154807_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQE57053.1|1154900_1156328_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQE57055.1|1156512_1158246_-	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQE57057.1|1158250_1158514_-	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQE57059.1|1158906_1159125_+	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
SQE57061.1|1159144_1161304_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.6	4.7e-263
SQE57063.1|1161507_1162467_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.2	1.8e-126
SQE57065.1|1162441_1163755_+	chloride channel protein	NA	NA	NA	NA	NA
SQE57067.1|1163850_1164096_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE57070.1|1164574_1165000_+	Transposase	NA	A0A1P8CWQ3	Bacillus_phage	44.1	2.5e-27
SQE57071.1|1165097_1165793_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQE57073.1|1165811_1166573_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQE57076.1|1166569_1166791_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQE57078.1|1167144_1169763_-|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	34.1	5.1e-62
>prophage 10
LS483307	Streptococcus pyogenes strain NCTC5163 genome assembly, chromosome: 1	1921448	1178428	1251776	1921448	tail,holin,protease,terminase,transposase,portal,tRNA,capsid,integrase	Streptococcus_phage(67.69%)	92	1207504:1207523	1249161:1249180
SQE57095.1|1178428_1179457_+|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQE57096.1|1179496_1180684_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQE57099.1|1180797_1181388_-	S11 family peptidase	NA	NA	NA	NA	NA
SQE57101.1|1181384_1181633_-	lipoprotein	NA	NA	NA	NA	NA
SQE57103.1|1181688_1181835_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE57105.1|1182001_1182607_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.2	1.8e-58
SQE57107.1|1182703_1183744_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SQE57109.1|1183835_1186034_-	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.4	9.0e-52
SQE57111.1|1186038_1186701_-	comE operon 1 domain-containing protein	NA	NA	NA	NA	NA
SQE57113.1|1186900_1187803_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQE57115.1|1187807_1188941_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE57119.1|1189084_1189861_+	methyltransferase	NA	NA	NA	NA	NA
SQE57121.1|1189850_1190129_+	GIY-YIG catalytic domain-containing protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	7.9e-06
SQE57123.1|1190152_1192153_-	Kup system potassium uptake protein	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	34.0	5.8e-66
SQE57125.1|1192279_1193899_-	DEAD-box ATP-dependent RNA helicase CshA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	1.9e-59
SQE57128.1|1194205_1195750_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.0	1.8e-35
SQE57130.1|1195997_1196693_-	integral membrane family protein	NA	NA	NA	NA	NA
SQE57132.1|1196772_1198164_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
SQE57134.1|1198354_1199401_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SQE57137.1|1199501_1200098_-	recombination protein	NA	NA	NA	NA	NA
SQE57139.1|1200895_1201675_-	formate transporter	NA	NA	NA	NA	NA
SQE57141.1|1201798_1202341_-	membrane protein	NA	NA	NA	NA	NA
SQE57143.1|1202501_1203023_-	3H domain-containing protein	NA	NA	NA	NA	NA
SQE57145.1|1203129_1203825_-	phosphoglyceromutase	NA	NA	NA	NA	NA
SQE57147.1|1204063_1204999_+	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	44.8	3.0e-65
SQE57149.1|1205298_1207161_-	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	34.1	5.4e-90
1207504:1207523	attL	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQE57151.1|1207693_1207876_-	paratox	NA	A3F673	Streptococcus_phage	76.7	3.1e-19
SQE57153.1|1208115_1208874_+	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQE57155.1|1208984_1209692_+	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
SQE57158.1|1209760_1210513_-	phage-associated cell wall hydrolase	NA	A3F665	Streptococcus_phage	96.8	7.9e-141
SQE57159.1|1210518_1210629_-	putative phage membrane protein	NA	NA	NA	NA	NA
SQE57161.1|1210630_1211086_-|holin	holin	holin	A0A0M4R3G6	Streptococcus_phage	81.5	2.3e-63
SQE57163.1|1211096_1211735_-	phage protein	NA	A3F662	Streptococcus_phage	53.7	1.2e-44
SQE57166.1|1211737_1212166_-	phage protein	NA	A3F661	Streptococcus_phage	86.5	1.7e-63
SQE57168.1|1212177_1214064_-	gp58-like family protein	NA	Q938J9	Temperate_phage	86.5	1.3e-203
SQE57170.1|1214076_1215099_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	91.7	1.2e-168
SQE57172.1|1215095_1217240_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	93.1	0.0e+00
SQE57174.1|1217236_1217944_-	phage protein	NA	Q938K2	Temperate_phage	71.1	1.7e-92
SQE57176.1|1217943_1221867_-|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	48.7	1.9e-238
SQE57178.1|1221879_1222047_-	phage protein	NA	J7KBS0	Streptococcus_phage	87.3	2.9e-19
SQE57180.1|1222076_1222403_-	phage protein	NA	J7KK85	Streptococcus_phage	73.1	6.0e-37
SQE57182.1|1222455_1223064_-|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	70.5	2.3e-74
SQE57185.1|1223080_1223506_-	phage protein	NA	J7KBZ9	Streptococcus_phage	85.1	5.0e-68
SQE57187.1|1223502_1223880_-	phage protein	NA	J7KDM3	Streptococcus_phage	72.8	1.4e-45
SQE57189.1|1223876_1224224_-	phage protein	NA	J7KJ42	Streptococcus_phage	85.5	1.5e-49
SQE57191.1|1224220_1224523_-	phage protein	NA	J7KC36	Streptococcus_phage	87.0	6.1e-44
SQE57193.1|1224658_1225861_-|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	64.4	6.0e-135
SQE57195.1|1225886_1226552_-|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	77.7	4.6e-92
SQE57197.1|1226529_1227750_-|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.7	2.0e-186
SQE57199.1|1227783_1228008_-	phage protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
SQE57200.1|1228000_1228171_-	phage protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
SQE57202.1|1228167_1229922_-|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	96.2	0.0e+00
SQE57204.1|1229936_1230404_-|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
SQE57206.1|1230574_1230913_-	Phage endonuclease	NA	J7KH36	Streptococcus_phage	90.7	3.0e-55
SQE57208.1|1231497_1231938_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	99.3	1.9e-78
SQE57210.1|1232213_1232585_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE57212.1|1232581_1233292_-	phage protein	NA	Q938L9	Temperate_phage	46.2	3.0e-25
SQE57214.1|1233294_1233927_-	phage protein	NA	L0P368	Streptococcus_phage	68.1	3.0e-85
SQE57216.1|1233928_1234213_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	89.4	1.4e-37
SQE57218.1|1234209_1234614_-	phage protein	NA	A3F627	Streptococcus_phage	65.2	1.6e-39
SQE57220.1|1234623_1234893_-	phage protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
SQE57222.1|1234889_1235174_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	96.8	2.2e-48
SQE57224.1|1235219_1235408_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	97.8	5.0e-20
SQE57226.1|1235404_1235761_-	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	97.5	4.6e-59
SQE57228.1|1235744_1236065_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	94.3	7.1e-51
SQE57230.1|1236061_1236475_-	phage protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	50.0	2.8e-15
SQE57232.1|1236736_1238212_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	86.7	1.7e-248
SQE57234.1|1238201_1239005_-	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	98.9	4.3e-153
SQE57236.1|1239016_1239475_-	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	99.3	5.0e-82
SQE57238.1|1239489_1240719_-	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	99.5	2.8e-236
SQE57240.1|1240820_1241501_-	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQE57242.1|1241501_1241984_-	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
SQE57244.1|1242131_1242446_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	96.2	7.0e-51
SQE57246.1|1242461_1242599_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	95.6	6.4e-17
SQE57248.1|1242600_1242912_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.6	1.4e-43
SQE57249.1|1242989_1243175_-	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQE57251.1|1243341_1243581_+	phage protein	NA	NA	NA	NA	NA
SQE57252.1|1243731_1243941_+	phage protein	NA	NA	NA	NA	NA
SQE57254.1|1243899_1244145_-	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
SQE57256.1|1244193_1245000_+	protein Ymh	NA	A0A1S5SBU1	Streptococcus_phage	82.1	7.9e-123
SQE57257.1|1244934_1245201_-	phage protein	NA	A0A1S5SC19	Streptococcus_phage	66.3	1.1e-23
SQE57260.1|1245211_1245451_-	Cro/CI family phage transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	98.7	1.4e-35
SQE57262.1|1245544_1246144_+	phage protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
SQE57264.1|1246173_1246332_-	phage protein	NA	A0A097PAP2	Streptococcus_pyogenes_phage	100.0	4.8e-24
SQE57266.1|1246428_1246530_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE57273.1|1246704_1247493_+	Phage transcriptional repressor	NA	A0A1S5SD15	Streptococcus_phage	63.0	2.0e-86
SQE57275.1|1247502_1247808_+	phage membrane protein	NA	NA	NA	NA	NA
SQE57277.1|1247930_1249073_+|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
SQE57278.1|1249162_1249438_-	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
1249161:1249180	attR	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQE57280.1|1249536_1250124_-	membrane protein	NA	NA	NA	NA	NA
SQE57283.1|1250101_1250962_-	GDSL family lipase	NA	NA	NA	NA	NA
SQE57285.1|1250936_1251776_-	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
>prophage 11
LS483307	Streptococcus pyogenes strain NCTC5163 genome assembly, chromosome: 1	1921448	1351805	1394421	1921448	tail,terminase,transposase,portal,integrase	Streptococcus_pyogenes_phage(59.02%)	64	1379158:1379173	1394574:1394589
SQE57493.1|1351805_1353161_-	RNA methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	32.7	4.3e-73
SQE57494.1|1353351_1353534_-	paratox	NA	J7KBZ4	Streptococcus_phage	81.4	1.1e-19
SQE57495.1|1353754_1354510_+	exotoxin type A	NA	A0A097PAT7	Streptococcus_pyogenes_phage	100.0	2.2e-143
SQE57496.1|1354631_1355291_-	phage protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	100.0	8.5e-123
SQE57497.1|1355290_1355512_-	phage protein	NA	A0A097PAX7	Streptococcus_pyogenes_phage	84.5	2.5e-18
SQE57498.1|1355521_1356295_-	phage protein	NA	A0A097PAV0	Streptococcus_pyogenes_phage	100.0	3.9e-135
SQE57499.1|1356305_1356908_-	phage protein	NA	A0A097PAX9	Streptococcus_pyogenes_phage	98.8	7.8e-91
SQE57500.1|1356919_1357684_-	phage-associated cell wall hydrolase	NA	A0A097PAT3	Streptococcus_pyogenes_phage	100.0	1.5e-150
SQE57501.1|1357685_1358018_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A097PBF6	Streptococcus_pyogenes_phage	100.0	5.7e-51
SQE57502.1|1358017_1358341_-	phage protein	NA	A0A097PAX2	Streptococcus_pyogenes_phage	100.0	7.7e-53
SQE57503.1|1358354_1358477_-	phage protein	NA	A0A097PAU6	Streptococcus_pyogenes_phage	97.5	2.4e-15
SQE57504.1|1358490_1358838_-	phage protein	NA	A0A097PAX5	Streptococcus_pyogenes_phage	100.0	3.5e-59
SQE57505.1|1358848_1360711_-	phage structural protein	NA	A0A097PAT0	Streptococcus_pyogenes_phage	99.7	0.0e+00
SQE57506.1|1360715_1364156_-	phage protein	NA	A0A097PBF5	Streptococcus_pyogenes_phage	99.9	0.0e+00
SQE57507.1|1364156_1365641_-|tail	siphovirus tail component family protein	tail	A0A097PAW9	Streptococcus_pyogenes_phage	99.8	4.3e-292
SQE57508.1|1365641_1367051_-	phage, tape measure protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	99.4	2.1e-219
SQE57509.1|1367079_1367448_-	phage protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	92.2	5.4e-18
SQE57510.1|1367440_1367899_-	phage protein	NA	A0A097PAX1	Streptococcus_pyogenes_phage	99.3	8.6e-82
SQE57511.1|1367871_1368189_-	phage protein	NA	A0A097PAS6	Streptococcus_pyogenes_phage	100.0	4.9e-52
SQE57512.1|1368201_1368708_-	antigen A	NA	A0A097PBF4	Streptococcus_pyogenes_phage	100.0	2.6e-79
SQE57513.1|1368719_1369130_-	antigen B	NA	A0A097PAW5	Streptococcus_pyogenes_phage	100.0	1.4e-70
SQE57514.1|1369131_1369515_-	antigen C	NA	A0A097PAT9	Streptococcus_pyogenes_phage	100.0	1.7e-59
SQE57515.1|1369523_1369835_-	phage protein	NA	A0A097PAW7	Streptococcus_pyogenes_phage	99.0	2.6e-50
SQE57516.1|1369831_1370176_-	phage protein	NA	A0A097PAS2	Streptococcus_pyogenes_phage	100.0	1.1e-54
SQE57517.1|1370189_1370483_-	phage protein	NA	A0A097PBF3	Streptococcus_pyogenes_phage	100.0	2.0e-47
SQE57518.1|1370495_1371386_-	phage protein	NA	A0A097PAW2	Streptococcus_pyogenes_phage	99.4	8.6e-86
SQE57519.1|1371403_1371976_-	phage scaffold protein	NA	A0A097PAW3	Streptococcus_pyogenes_phage	100.0	1.2e-72
SQE57520.1|1372125_1372392_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	100.0	2.6e-38
SQE57521.1|1372398_1373307_-	phage protein	NA	A0A097PBF2	Streptococcus_pyogenes_phage	100.0	4.2e-88
SQE57522.1|1373275_1374601_-|portal	portal protein	portal	A0A097PAT2	Streptococcus_pyogenes_phage	100.0	7.4e-243
SQE57523.1|1374600_1375875_-|terminase	terminase large subunit	terminase	A0A097PAV9	Streptococcus_pyogenes_phage	100.0	1.1e-251
SQE57524.1|1375864_1376245_-	phage protein	NA	A0A097PAR5	Streptococcus_pyogenes_phage	100.0	1.0e-64
SQE57525.1|1376854_1377289_-	autolysin regulatory protein	NA	J7KDQ1	Streptococcus_phage	94.4	2.2e-71
SQE57526.1|1377573_1377744_-	phage protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	100.0	2.9e-27
SQE57527.1|1377740_1378244_-	phage protein	NA	A0A097PAV5	Streptococcus_pyogenes_phage	98.2	2.2e-91
SQE57528.1|1378530_1378716_-	phage protein	NA	A0A097PBF0	Streptococcus_pyogenes_phage	100.0	7.0e-27
SQE57529.1|1378881_1379217_-	Uncharacterised protein	NA	A0A097PAS4	Streptococcus_pyogenes_phage	100.0	4.7e-45
1379158:1379173	attL	AAATCCCATTATAAAA	NA	NA	NA	NA
SQE57530.1|1379219_1379504_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	91.5	5.0e-40
SQE57531.1|1379500_1379671_-	phage protein	NA	Q938M0	Temperate_phage	96.8	2.5e-10
SQE57532.1|1379667_1380081_-	phage protein	NA	Q938M1	Temperate_phage	63.1	1.2e-34
SQE57533.1|1380077_1380362_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	97.9	2.7e-49
SQE57534.1|1380355_1380607_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	92.8	3.4e-40
SQE57535.1|1380603_1380960_-	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	95.8	1.8e-58
SQE57536.1|1380943_1381264_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	99.1	5.8e-53
SQE57537.1|1381409_1382273_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE57538.1|1382477_1383959_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	99.4	4.2e-295
SQE57539.1|1383948_1384752_-	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	98.9	4.3e-153
SQE57540.1|1384763_1385222_-	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	99.3	5.0e-82
SQE57541.1|1385236_1386466_-	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	99.5	2.8e-236
SQE57542.1|1386567_1387248_-	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQE57543.1|1387248_1387731_-	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
SQE57544.1|1387878_1388193_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	96.2	7.0e-51
SQE57545.1|1388208_1388346_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	91.1	9.2e-16
SQE57546.1|1388376_1388628_-	phage protein	NA	A0A1P8VVV6	Streptococcus_phage	98.8	1.4e-41
SQE57547.1|1388722_1388941_-	Transcriptional regulator, Cro family	NA	A0A1P8VVR5	Streptococcus_phage	100.0	4.1e-34
SQE57548.1|1389129_1389489_+	Transcriptional regulator, MerR family	NA	A0A1P8VVN3	Streptococcus_phage	98.3	1.8e-58
SQE57549.1|1389472_1389850_+	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	100.0	4.0e-69
SQE57550.1|1389860_1390013_+	phage protein	NA	A0A1P8VVQ0	Streptococcus_phage	100.0	5.2e-20
SQE57551.1|1390183_1390870_+	phage protein	NA	A0A1P8VVT3	Streptococcus_phage	99.1	4.8e-121
SQE57552.1|1391043_1391712_+|integrase	phage integrase	integrase	C5J953	Streptococcus_phage	47.2	8.8e-51
SQE57553.1|1391735_1392128_+|integrase	phage integrase	integrase	A0A1S5SEH2	Streptococcus_phage	48.6	1.9e-13
SQE57554.1|1392275_1393052_+	recX family protein	NA	NA	NA	NA	NA
SQE57555.1|1393131_1393665_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQE57556.1|1394034_1394421_+|transposase	transposase	transposase	A0A1X9I619	Streptococcus_phage	56.7	2.1e-25
1394574:1394589	attR	TTTTATAATGGGATTT	NA	NA	NA	NA
>prophage 12
LS483307	Streptococcus pyogenes strain NCTC5163 genome assembly, chromosome: 1	1921448	1679401	1750249	1921448	transposase,tRNA,protease,bacteriocin	Synechococcus_phage(11.11%)	58	NA	NA
SQE57817.1|1679401_1680745_-|tRNA	cysteinyl-tRNA synthetase	tRNA	A0A1V0SAQ2	Catovirus	30.1	8.5e-53
SQE57818.1|1680772_1681003_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE57819.1|1681481_1682063_-	serine acetyl transferase	NA	NA	NA	NA	NA
SQE57820.1|1682071_1682824_-	polynucleotide phosphorylase/polyadenylase	NA	NA	NA	NA	NA
SQE57821.1|1685228_1685957_-	translaldolase	NA	H8ZNI7	Synechococcus_phage	33.0	8.4e-15
SQE57822.1|1685969_1687349_-	PTS system ascorbate-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQE57823.1|1687375_1687660_-	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
SQE57824.1|1687652_1689713_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQE57825.1|1690064_1690334_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
SQE57826.1|1690509_1690710_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE57827.1|1691218_1691833_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	38.9	1.3e-13
SQE57828.1|1691866_1692409_-	oxidoreductase	NA	NA	NA	NA	NA
SQE57829.1|1692538_1692967_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
SQE57830.1|1693076_1697474_-	DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	40.8	1.7e-17
SQE57831.1|1697727_1699584_-|tRNA	prolyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	24.6	4.1e-05
SQE57832.1|1699781_1701041_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
SQE57833.1|1701113_1701908_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SQE57834.1|1701920_1702670_-	undecaprenyl pyrophosphate synthase	NA	R9W0U9	Flavobacterium_phage	41.7	9.6e-22
SQE57835.1|1702898_1703264_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
SQE57836.1|1703379_1703727_-|bacteriocin	bacteriocin transporter	bacteriocin	NA	NA	NA	NA
SQE57837.1|1703868_1707366_-	pullulanase	NA	NA	NA	NA	NA
SQE57838.1|1707755_1709363_-	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
SQE57839.1|1709491_1710625_-	Multiple sugar-binding transport ATP-binding protein msmK	NA	G3M9Y6	Bacillus_virus	32.9	1.1e-24
SQE57840.1|1710922_1711771_-	leucine rich protein	NA	NA	NA	NA	NA
SQE57841.1|1712130_1713453_+	streptokinase C	NA	NA	NA	NA	NA
SQE57842.1|1713550_1713994_-|tRNA	D-tyrosyl-tRNA deacylase	tRNA	NA	NA	NA	NA
SQE57843.1|1714008_1716228_-	GTP pyrophosphokinase	NA	A0A1S6L1R3	Vibrio_phage	36.9	1.5e-06
SQE57844.1|1716479_1716755_-	collagen-like protein	NA	NA	NA	NA	NA
SQE57845.1|1716905_1717325_-	collagen-like protein	NA	NA	NA	NA	NA
SQE57846.1|1717725_1718859_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE57847.1|1718863_1718998_+	hupothetical protein	NA	NA	NA	NA	NA
SQE57848.1|1719032_1719515_+	nrdI Flavodoxin like family protein	NA	NA	NA	NA	NA
SQE57849.1|1719909_1720728_-	putative RgfB protein	NA	NA	NA	NA	NA
SQE57850.1|1720806_1722993_-	PTS system, glucose-specific II ABC component	NA	A0A2I7SAJ6	Vibrio_phage	43.0	1.9e-06
SQE57851.1|1723354_1724104_-	16S ribosomal RNA methyltransferase	NA	NA	NA	NA	NA
SQE57852.1|1724103_1725057_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
SQE57853.1|1725127_1725598_-	Protein of uncharacterised function (DUF3013)	NA	NA	NA	NA	NA
SQE57854.1|1725653_1725755_-	RhuM	NA	NA	NA	NA	NA
SQE57855.1|1726291_1727155_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE57856.1|1727298_1727640_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE57857.1|1728436_1730194_+	para-aminobenzoate synthetase componentI/4-amino-4-deoxychorismate lyase	NA	A0A0B5J984	Pandoravirus	30.1	1.2e-38
SQE57858.1|1730226_1730793_+	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.4	4.5e-32
SQE57859.1|1730825_1732094_+	Chromosome segregation helicase	NA	A0A127AWE7	Bacillus_phage	46.9	4.5e-96
SQE57860.1|1732592_1733033_+	acetyltransferase	NA	NA	NA	NA	NA
SQE57861.1|1733087_1733558_+	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	42.3	2.1e-27
SQE57862.1|1733842_1734544_+	mitogenic exotoxin Z	NA	A0EX09	Staphylococcus_phage	36.2	7.3e-16
SQE57863.1|1734870_1735095_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQE57864.1|1735273_1736902_+	Glutathione-binding protein gsiB	NA	NA	NA	NA	NA
SQE57865.1|1737014_1737992_+	oligopeptide ABC transporter (permease)	NA	NA	NA	NA	NA
SQE57866.1|1737988_1738810_+	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	NA	NA	NA	NA	NA
SQE57867.1|1738821_1739625_+	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.9	6.5e-08
SQE57868.1|1739608_1740235_+	Dipeptide transport ATP-binding protein dppF	NA	A0A2H4P6Z4	Pseudomonas_phage	26.1	1.0e-05
SQE57869.1|1740317_1740518_-	CsbD-like protein	NA	J7KJ36	Streptococcus_phage	86.4	1.3e-21
SQE57870.1|1740686_1743158_-	histidine triad protein	NA	NA	NA	NA	NA
SQE57871.1|1743170_1744091_-	Laminin-binding surface protein	NA	NA	NA	NA	NA
SQE57872.1|1744268_1745402_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE57873.1|1745652_1749156_-	C5A peptidase	NA	NA	NA	NA	NA
SQE57874.1|1749589_1750249_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	91.3	1.9e-114
>prophage 13
LS483307	Streptococcus pyogenes strain NCTC5163 genome assembly, chromosome: 1	1921448	1845370	1861089	1921448	tRNA	Streptococcus_phage(61.54%)	22	NA	NA
SQE57957.1|1845370_1846162_-	transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	48.5	7.5e-09
SQE57958.1|1846253_1846487_+	transcriptional regulator	NA	NA	NA	NA	NA
SQE57959.1|1846541_1846949_+	phage protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
SQE57960.1|1846962_1847580_+	pRha family phage regulatory protein	NA	A0A159B6D5	Gordonia_phage	38.8	2.2e-11
SQE57961.1|1847813_1848155_+	phage protein	NA	NA	NA	NA	NA
SQE57962.1|1848141_1848363_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE57963.1|1848365_1848557_+	phage protein	NA	NA	NA	NA	NA
SQE57964.1|1848568_1848898_+	phage protein	NA	NA	NA	NA	NA
SQE57965.1|1848900_1849173_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
SQE57966.1|1849173_1850031_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	74.8	4.5e-124
SQE57967.1|1849999_1851688_+	phage/plasmid primase, P4 family, C-terminal domain protein	NA	A0A1X9I717	Streptococcus_phage	82.1	2.5e-259
SQE57968.1|1851974_1852148_+	Uncharacterised protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
SQE57969.1|1852153_1852327_+	phage protein	NA	NA	NA	NA	NA
SQE57970.1|1852328_1852838_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.1e-29
SQE57971.1|1852911_1853400_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
SQE57972.1|1853798_1854161_+	phage protein	NA	A0A2H4JFS1	uncultured_Caudovirales_phage	29.9	1.3e-05
SQE57973.1|1854135_1854519_+	phage protein	NA	Q938L8	Temperate_phage	41.7	3.7e-14
SQE57974.1|1854719_1855382_+	secreted phage protein	NA	NA	NA	NA	NA
SQE57975.1|1855778_1858334_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	23.4	3.0e-43
SQE57976.1|1858320_1858527_-	cytoplasmic protein	NA	NA	NA	NA	NA
SQE57977.1|1858669_1859107_-	arginine repressor	NA	NA	NA	NA	NA
SQE57978.1|1859397_1861089_+|tRNA	arginyl-tRNA synthetase	tRNA	A0A2I2L3K1	Orpheovirus	32.2	7.1e-73
