assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900474755.1_41236_E02	LS483324	Staphylococcus aureus strain NCTC10344 genome assembly, chromosome: 1	1	214943-215024	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	3	214967-215000|214967-215000|214967-215000	LS483324.1_1479917-1479884|LS483324.1_1259445-1259478|LS483324.1_1392386-1392419	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA|68aa|down_0|LS483324.1_215087_215291_-	NA|89aa|up_9|LS483324.1_205307_205574_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|310aa|up_8|LS483324.1_205570_206500_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|LS483324.1_206510_207068_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|LS483324.1_207067_207955_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|LS483324.1_208008_209271_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|LS483324.1_209347_210493_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|LS483324.1_210557_210884_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|LS483324.1_210890_211274_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|LS483324.1_211700_213188_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|LS483324.1_213834_214794_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|LS483324.1_215087_215291_-	NA	NA|171aa|down_1|LS483324.1_215469_215982_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|LS483324.1_216323_217064_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|LS483324.1_217077_218052_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|LS483324.1_218048_218810_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|345aa|down_5|LS483324.1_218819_219854_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|LS483324.1_220070_220430_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|LS483324.1_220602_221628_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|LS483324.1_222013_223264_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|LS483324.1_223710_230886_+	PRK12467, PRK12467, peptide synthase; Provisional
GCA_900474755.1_41236_E02	LS483324	Staphylococcus aureus strain NCTC10344 genome assembly, chromosome: 1	3	818017-818099	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|94aa|up_1|LS483324.1_816904_817186_-,NA	NA|237aa|up_9|LS483324.1_804968_805679_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_8|LS483324.1_805662_806667_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_7|LS483324.1_807140_809081_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|626aa|up_6|LS483324.1_809356_811234_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|593aa|up_5|LS483324.1_811248_813027_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_4|LS483324.1_813248_814226_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_3|LS483324.1_814218_815733_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_2|LS483324.1_815972_817031_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|94aa|up_1|LS483324.1_816904_817186_-	NA	NA|181aa|up_0|LS483324.1_817325_817868_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|LS483324.1_818547_819465_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|502aa|down_1|LS483324.1_819733_821239_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_2|LS483324.1_821579_822080_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_3|LS483324.1_822099_822966_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_4|LS483324.1_823766_824165_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_5|LS483324.1_824127_826233_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_6|LS483324.1_826350_827322_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|338aa|down_7|LS483324.1_827987_829001_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|down_8|LS483324.1_828987_829944_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|254aa|down_9|LS483324.1_829940_830702_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
GCA_900474755.1_41236_E02	LS483324	Staphylococcus aureus strain NCTC10344 genome assembly, chromosome: 1	4	907656-907737	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	907680-907713|907680-907713	LS483324.1_1479884-1479917|LS483324.1_1259478-1259445	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|38aa|up_1|LS483324.1_906558_906672_+,NA	NA|206aa|up_9|LS483324.1_901413_902031_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|LS483324.1_902185_902680_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|LS483324.1_903078_903501_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|LS483324.1_903648_904365_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|LS483324.1_904447_904987_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|LS483324.1_905136_905457_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|LS483324.1_905600_905957_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|LS483324.1_906114_906495_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|LS483324.1_906558_906672_+	NA	NA|293aa|up_0|LS483324.1_906673_907552_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|down_0|LS483324.1_908457_908847_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|LS483324.1_908839_909136_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|LS483324.1_909385_910411_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|LS483324.1_910403_911099_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|LS483324.1_911116_911938_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|LS483324.1_912291_912486_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|LS483324.1_912719_913571_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|LS483324.1_913898_914660_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|LS483324.1_914758_916066_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|LS483324.1_916180_917422_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_900474755.1_41236_E02	LS483324	Staphylococcus aureus strain NCTC10344 genome assembly, chromosome: 1	5	1953702-1953844	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CACCTATACCTCGTTCCGGGAAGGAACGTGTTCTAAAAGTTGAACTACTCCCGCA	55	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|132aa|up_8|LS483324.1_1945891_1946287_-,NA|98aa|up_7|LS483324.1_1946405_1946699_+,NA|51aa|up_6|LS483324.1_1946830_1946983_-,NA	NA|462aa|up_9|LS483324.1_1944310_1945696_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_8|LS483324.1_1945891_1946287_-	NA	NA|98aa|up_7|LS483324.1_1946405_1946699_+	NA	NA|51aa|up_6|LS483324.1_1946830_1946983_-	NA	NA|200aa|up_5|LS483324.1_1947007_1947607_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|LS483324.1_1947765_1948236_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_3|LS483324.1_1948240_1949368_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|LS483324.1_1949519_1950248_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|LS483324.1_1950234_1951692_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|LS483324.1_1951949_1953011_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|LS483324.1_1961789_1962236_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|320aa|down_1|LS483324.1_1962332_1963292_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|LS483324.1_1963288_1963744_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|LS483324.1_1963824_1965114_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|382aa|down_4|LS483324.1_1965355_1966501_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|LS483324.1_1966691_1968428_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|LS483324.1_1968718_1969261_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|LS483324.1_1969562_1970600_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|LS483324.1_1970751_1971729_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|LS483324.1_1971989_1972826_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCA_900474755.1_41236_E02	LS483324	Staphylococcus aureus strain NCTC10344 genome assembly, chromosome: 1	6	2239686-2239842	1	PILER-CR	no	csa3	csa3,cas3,DEDDh,DinG,WYL	Type I-A	CCCCTACTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG	41	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|77aa|up_5|LS483324.1_2234561_2234792_-,NA|364aa|up_0|LS483324.1_2238581_2239673_+,NA|32aa|down_1|LS483324.1_2243204_2243300_+	NA|237aa|up_9|LS483324.1_2230170_2230881_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|LS483324.1_2231001_2231445_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|LS483324.1_2231644_2232058_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|LS483324.1_2232514_2233888_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|LS483324.1_2234561_2234792_-	NA	NA|313aa|up_4|LS483324.1_2234822_2235761_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|LS483324.1_2236196_2236862_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|LS483324.1_2237013_2237334_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|LS483324.1_2237335_2238316_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|LS483324.1_2238581_2239673_+	NA	NA|379aa|down_0|LS483324.1_2241380_2242517_-	pfam02037, SAP, SAP domain	NA|32aa|down_1|LS483324.1_2243204_2243300_+	NA	NA|286aa|down_2|LS483324.1_2243525_2244383_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|LS483324.1_2244450_2245233_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|LS483324.1_2245464_2247270_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|LS483324.1_2247950_2249489_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|LS483324.1_2249523_2251656_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|LS483324.1_2251667_2252102_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|LS483324.1_2252101_2253208_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2474aa|down_9|LS483324.1_2253526_2260948_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
