The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483322	Streptococcus pyogenes strain NCTC12066 genome assembly, chromosome: 1	1744145	36539	48901	1744145		Synechococcus_phage(28.57%)	8	NA	NA
SQE91549.1|36539_40313_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.8	3.6e-40
SQE91550.1|40473_41928_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.5	1.4e-53
SQE91551.1|41955_42978_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.7	1.4e-63
SQE91552.1|43145_43700_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.7	5.2e-25
SQE91553.1|43883_45431_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.9	2.6e-45
SQE91554.1|45489_46614_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.0	6.5e-06
SQE91555.1|46776_48132_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQE91556.1|48409_48901_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
LS483322	Streptococcus pyogenes strain NCTC12066 genome assembly, chromosome: 1	1744145	637000	696239	1744145	integrase,transposase,tRNA,protease	Bacillus_phage(18.75%)	55	652692:652708	696815:696831
SQE92722.1|637000_638029_-|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQE92724.1|638230_638935_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQE92726.1|639053_639770_+	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQE92728.1|640064_641027_+	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQE92730.1|641039_642845_+	oligoendopeptidase F	NA	NA	NA	NA	NA
SQE92732.1|643220_644417_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE92734.1|644518_645190_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	1.9e-08
SQE92736.1|645252_646308_+	foldase protein prsA 1	NA	NA	NA	NA	NA
SQE92738.1|646694_649313_+|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	34.1	6.7e-62
SQE92740.1|649673_649889_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQE92742.1|649885_650647_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQE92744.1|650665_651361_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQE92745.1|651458_651674_-	Transposase	NA	U5P429	Shigella_phage	43.9	2.7e-09
SQE92747.1|651713_652283_-|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	37.9	1.4e-25
SQE92748.1|652315_652609_-|transposase	transposase	transposase	NA	NA	NA	NA
652692:652708	attL	TTTTGGGGTGCAGTTCA	NA	NA	NA	NA
SQE92750.1|652746_654060_-	chloride channel protein	NA	NA	NA	NA	NA
SQE92751.1|654034_654994_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.5	3.7e-127
SQE92753.1|655326_657486_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.6	6.1e-263
SQE92755.1|657505_657724_-	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
SQE92757.1|658116_658380_+	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQE92759.1|658384_660118_+	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQE92761.1|660302_661730_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQE92763.1|661824_663099_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQE92765.1|663208_664294_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.6e-33
SQE92767.1|664391_665018_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	2.2e-35
SQE92769.1|665097_665361_+	membrane protein	NA	NA	NA	NA	NA
SQE92770.1|665413_665848_-	membrane protein	NA	NA	NA	NA	NA
SQE92772.1|665801_666122_-	membrane protein	NA	NA	NA	NA	NA
SQE92773.1|666266_666764_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQE92774.1|666763_668434_+	DNA polymerase III subunits gamma and tau	NA	E7DN81	Pneumococcus_phage	40.6	5.1e-47
SQE92776.1|668707_669649_-	biotin-protein ligase	NA	NA	NA	NA	NA
SQE92777.1|669852_672249_+	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
SQE92778.1|672785_673982_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	4.5e-138
SQE92779.1|674155_675415_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQE92780.1|675772_676762_+	protein G-related alpha 2M-bindingprotein	NA	NA	NA	NA	NA
SQE92781.1|676999_677542_+	acetyltransferase family protein	NA	NA	NA	NA	NA
SQE92783.1|677550_678834_+	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQE92784.1|678849_679710_+	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQE92785.1|679711_680677_+	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQE92786.1|680787_682071_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQE92788.1|682063_682555_+	shikimate kinase	NA	NA	NA	NA	NA
SQE92790.1|682762_684214_+	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQE92792.1|684295_685654_+|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	F5CA72	Streptococcus_phi-m46.1-like_phage	99.3	1.7e-255
SQE92795.1|686071_686584_+	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	100.0	3.1e-96
SQE92797.1|686668_687070_+	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQE92799.1|687174_688659_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQE92802.1|689032_690253_+	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQE92804.1|690372_690738_-	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQE92806.1|690852_691584_+	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQE92809.1|691753_691924_-|integrase	integrase	integrase	U5P429	Shigella_phage	46.3	2.0e-07
SQE92811.1|692026_692323_-	DNA-binding protein	NA	A0A1B1P773	Bacillus_phage	40.7	1.9e-05
SQE92814.1|692355_692649_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE92816.1|692726_694037_-	membrane protein	NA	NA	NA	NA	NA
SQE92819.1|694260_695133_+	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQE92821.1|695432_696239_-|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	48.9	9.2e-63
696815:696831	attR	TTTTGGGGTGCAGTTCA	NA	NA	NA	NA
>prophage 3
LS483322	Streptococcus pyogenes strain NCTC12066 genome assembly, chromosome: 1	1744145	718577	777363	1744145	terminase,integrase,tail,holin,portal,transposase,protease	Streptococcus_phage(57.63%)	72	722229:722244	779000:779015
SQE92884.1|718577_719564_-|transposase	transposase	transposase	Q9MBM9	Staphylococcus_prophage	32.6	5.3e-36
SQE92886.1|719744_720581_-	maltose transport system permease	NA	NA	NA	NA	NA
SQE92888.1|720580_721942_-	maltose/maltodextrin ABC transport system permease	NA	NA	NA	NA	NA
SQE92890.1|722215_723463_-	maltose/maltodextrin-binding protein	NA	NA	NA	NA	NA
722229:722244	attL	GCGATATCTTTGTCGA	NA	NA	NA	NA
SQE92902.1|723707_724727_+	LacI family transcription regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
SQE92906.1|724840_726334_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
SQE92908.1|726368_728633_+	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
SQE92910.1|728889_729510_-	phage protein	NA	NA	NA	NA	NA
SQE92912.1|729872_730961_-|integrase	integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	99.2	4.7e-203
SQE92914.1|731080_731386_-	phage membrane protein	NA	NA	NA	NA	NA
SQE92916.1|731395_732184_-	Phage transcriptional repressor	NA	A0A1S5SD15	Streptococcus_phage	62.6	2.9e-85
SQE92918.1|732356_732458_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE92920.1|732554_732701_+	phage protein	NA	A0A097PAP2	Streptococcus_pyogenes_phage	92.3	6.6e-20
SQE92922.1|732734_732899_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE92924.1|732834_733614_-	Uncharacterised protein	NA	A0A1S5S7L0	Streptococcus_phage	57.4	6.2e-48
SQE92926.1|733670_733877_+	phage protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	92.8	1.4e-28
SQE92928.1|733865_734252_-	phage protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	100.0	1.2e-65
SQE92930.1|734325_734565_+	Cro/CI family phage transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	98.7	1.4e-35
SQE92932.1|734576_734822_+	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	96.3	4.2e-35
SQE92934.1|734780_734990_-	phage protein	NA	NA	NA	NA	NA
SQE92935.1|735140_735380_-	phage protein	NA	NA	NA	NA	NA
SQE92942.1|735546_735732_+	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQE92944.1|735809_736106_+	phage protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	100.0	2.1e-49
SQE92945.1|736102_736237_+	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	97.7	2.5e-18
SQE92947.1|736252_736567_+	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	94.2	2.3e-49
SQE92949.1|736795_737278_+	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
SQE92951.1|737278_737959_+	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQE92953.1|738060_739290_+	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	99.5	2.8e-236
SQE92955.1|739305_739764_+	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	99.3	5.0e-82
SQE92957.1|739766_740579_+	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	98.9	4.6e-155
SQE92959.1|740568_741123_+	DNA primase	NA	J7KH16	Streptococcus_phage	92.7	1.5e-85
SQE92961.1|741128_742043_+	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	79.3	3.3e-133
SQE92963.1|742304_742718_+	phage protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	50.0	2.8e-15
SQE92964.1|742714_743035_+	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	92.5	2.7e-50
SQE92966.1|743018_743222_+	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	100.0	3.1e-07
SQE92968.1|743218_743503_+	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	87.2	6.1e-38
SQE92970.1|743527_743902_+	DNA methyltransferase - phage associated	NA	A0A097PAU8	Streptococcus_pyogenes_phage	99.2	2.6e-68
SQE92973.1|744092_744494_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE92975.1|744493_745129_+	phage protein	NA	L0P368	Streptococcus_phage	68.9	2.2e-88
SQE92977.1|745401_745842_+	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	98.6	2.1e-77
SQE92979.1|746427_746766_+	Phage endonuclease	NA	J7KH36	Streptococcus_phage	90.7	3.0e-55
SQE92982.1|746936_747404_+|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	99.4	3.0e-82
SQE92984.1|747418_749173_+|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	97.3	0.0e+00
SQE92987.1|749169_749340_+	phage protein	NA	J7KK43	Streptococcus_phage	58.3	3.0e-08
SQE92989.1|749332_749599_+	phage protein	NA	Q938K9	Temperate_phage	86.4	6.2e-32
SQE92991.1|749632_750853_+|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.4	1.0e-185
SQE92993.1|750830_751496_+|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	79.0	5.4e-93
SQE92995.1|751521_752706_+	phage protein	NA	J7KJ82	Streptococcus_phage	84.5	1.2e-180
SQE92997.1|752850_753153_+	phage protein	NA	J7KC36	Streptococcus_phage	86.7	1.1e-42
SQE93000.1|753164_753488_+	phage protein	NA	J7KJ42	Streptococcus_phage	80.0	5.9e-45
SQE93002.1|753484_753862_+	phage protein	NA	J7KDM3	Streptococcus_phage	75.2	2.5e-47
SQE93004.1|753858_754284_+	phage protein	NA	J7KBZ9	Streptococcus_phage	85.1	1.7e-68
SQE93006.1|754302_754914_+|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	76.2	3.8e-77
SQE93008.1|754966_755293_+	phage protein	NA	J7KK85	Streptococcus_phage	76.9	1.5e-40
SQE93010.1|755502_759426_+|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	48.9	4.6e-240
SQE93012.1|759425_760133_+	phage protein	NA	Q938K2	Temperate_phage	69.8	2.4e-91
SQE93014.1|760129_762277_+	Phage endopeptidase	NA	Q938K1	Temperate_phage	93.4	0.0e+00
SQE93017.1|762276_763386_+	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	71.8	4.9e-123
SQE93019.1|763395_765414_+	Phage infection protein	NA	Q938J9	Temperate_phage	71.6	4.4e-170
SQE93021.1|765425_765857_+	phage protein	NA	Q938J8	Temperate_phage	89.5	1.3e-63
SQE93024.1|765859_766477_+	phage protein	NA	Q938J7	Temperate_phage	88.3	1.1e-76
SQE93026.1|766486_766762_+|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQE93028.1|766758_766986_+	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	5.8e-31
SQE93030.1|767101_768310_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	86.3	1.2e-212
SQE93032.1|768447_769572_+	phage protein, Fic family	NA	D7RWK9	Brochothrix_phage	49.1	3.1e-93
SQE93034.1|769784_770567_+	Enterotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	45.8	4.3e-49
SQE93036.1|770679_770868_+	phage protein	NA	A3F673	Streptococcus_phage	84.7	1.2e-21
SQE93038.1|771458_772073_+	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
SQE93040.1|772203_772989_-	ABC transporter permease protein	NA	NA	NA	NA	NA
SQE93042.1|772998_773697_-	ABC transporter family protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
SQE93045.1|773696_774068_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE93046.1|774252_777363_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.8	1.4e-119
779000:779015	attR	TCGACAAAGATATCGC	NA	NA	NA	NA
>prophage 4
LS483322	Streptococcus pyogenes strain NCTC12066 genome assembly, chromosome: 1	1744145	1104153	1114756	1744145		Streptococcus_phage(57.14%)	9	NA	NA
SQE93786.1|1104153_1105296_-	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
SQE93788.1|1105530_1105971_+	membrane protein	NA	NA	NA	NA	NA
SQE93790.1|1106000_1107269_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQE93793.1|1107356_1108709_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.0	3.5e-30
SQE93795.1|1108929_1109271_-	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	39.3	1.3e-18
SQE93797.1|1109331_1110498_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQE93798.1|1110591_1111278_-	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQE93800.1|1111274_1112438_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQE93802.1|1112545_1114756_+	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.9	6.5e-268
>prophage 5
LS483322	Streptococcus pyogenes strain NCTC12066 genome assembly, chromosome: 1	1744145	1303938	1384953	1744145	integrase,bacteriocin,tRNA,transposase,protease	Bacillus_phage(16.67%)	91	1333482:1333499	1345066:1345083
SQE94183.1|1303938_1305882_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.7	1.4e-120
SQE94185.1|1306303_1307638_-	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
SQE94187.1|1307639_1308638_-	glycosyltransferase	NA	NA	NA	NA	NA
SQE94189.1|1308768_1309770_-	Catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
SQE94191.1|1309943_1311029_+	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQE94193.1|1311077_1311743_+	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA	NA
SQE94195.1|1311753_1312131_+	bleomycin resistance protein	NA	NA	NA	NA	NA
SQE94197.1|1312275_1313202_+	glucosyl transferase family 2	NA	V5USA4	Oenococcus_phage	47.9	1.2e-77
SQE94199.1|1313412_1314096_+	membrane protein	NA	NA	NA	NA	NA
SQE94201.1|1314095_1315022_+	membrane protein	NA	NA	NA	NA	NA
SQE94204.1|1315071_1315719_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQE94206.1|1315835_1316555_-	glutamine cyclotransferase	NA	NA	NA	NA	NA
SQE94208.1|1316560_1317028_-	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	57.0	5.7e-41
SQE94210.1|1317030_1319361_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.8	3.0e-90
SQE94212.1|1319457_1319694_-	preprotein translocase subunit	NA	NA	NA	NA	NA
SQE94214.1|1319882_1321076_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE94217.1|1321197_1322700_-	ATPase	NA	A0A248XCZ8	Klebsiella_phage	41.2	2.0e-74
SQE94219.1|1322889_1323483_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQE94221.1|1323479_1324307_-	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	3.9e-16
SQE94223.1|1324478_1325345_-	transcriptional regulator	NA	NA	NA	NA	NA
SQE94225.1|1326415_1326685_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE94227.1|1327032_1327479_-	histidine kinase	NA	NA	NA	NA	NA
SQE94229.1|1327523_1328591_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE94231.1|1329005_1329245_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE94233.1|1329438_1329720_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE94235.1|1330258_1330459_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQE94236.1|1330471_1330699_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQE94238.1|1331016_1331439_+|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
SQE94240.1|1331435_1331585_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQE94242.1|1331893_1332076_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQE94244.1|1332090_1332336_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQE94246.1|1332641_1332791_-|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQE94248.1|1332787_1333210_-|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
1333482:1333499	attL	TTTTTTCATCATGAAATG	NA	NA	NA	NA
SQE94249.1|1333661_1335815_+	Bacteriocin processing peptidase / Bacteriocin export ABC transporter	NA	W8CYL7	Bacillus_phage	28.3	1.7e-42
SQE94251.1|1335825_1336311_+	N-terminal fragment of BlpB	NA	NA	NA	NA	NA
SQE94253.1|1336285_1337191_+	Bacteriocin export accessory protein	NA	NA	NA	NA	NA
SQE94255.1|1337267_1337393_+	COMC family	NA	NA	NA	NA	NA
SQE94257.1|1337540_1338875_-	two-component system, AgrA family, sensor histidine kinase AgrC	NA	NA	NA	NA	NA
SQE94259.1|1338875_1339625_-	response regulator	NA	A0A1V0E029	Clostridioides_phage	28.0	4.8e-21
SQE94261.1|1339859_1340792_-|transposase	ISSag8, transposase	transposase	A0A1X9I5T2	Streptococcus_phage	88.8	2.3e-142
SQE94263.1|1340742_1341354_-|transposase	truncated transposase	transposase	A0A1X9I5T2	Streptococcus_phage	96.6	4.6e-99
SQE94265.1|1341567_1341783_-	Transposase	NA	U5P429	Shigella_phage	45.5	7.0e-10
SQE94268.1|1341822_1342392_-|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	38.5	2.2e-26
SQE94281.1|1342771_1343089_-	role in replication	NA	NA	NA	NA	NA
SQE94282.1|1343137_1343368_-|bacteriocin	bacteriocin class II with double-glycine leader peptide	bacteriocin	NA	NA	NA	NA
SQE94283.1|1344268_1344496_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE94284.1|1344581_1344758_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE94285.1|1344735_1344960_-	blpU	NA	NA	NA	NA	NA
SQE94286.1|1345257_1345494_+|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
1345066:1345083	attR	TTTTTTCATCATGAAATG	NA	NA	NA	NA
SQE94287.1|1345598_1346309_+|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
SQE94289.1|1346804_1347035_-	truncated SilB	NA	NA	NA	NA	NA
SQE94291.1|1347448_1347643_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE94293.1|1348139_1348616_-	phosphohydrolase	NA	NA	NA	NA	NA
SQE94296.1|1348636_1349533_-	GTP-binding protein Era	NA	NA	NA	NA	NA
SQE94298.1|1349652_1350060_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQE94301.1|1350040_1350538_-|protease	metalloprotease	protease	NA	NA	NA	NA
SQE94303.1|1350696_1351272_-	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQE94306.1|1351317_1352370_-	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQE94308.1|1352528_1354301_-	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQE94311.1|1354613_1355783_-	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.5e-16
SQE94313.1|1355938_1356154_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQE94316.1|1356150_1356660_-	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQE94318.1|1356732_1357590_-	s1 RNA binding domain	NA	NA	NA	NA	NA
SQE94321.1|1357698_1358256_-	ribosome recycling factor	NA	NA	NA	NA	NA
SQE94324.1|1358285_1359014_-	uridylate kinase	NA	NA	NA	NA	NA
SQE94326.1|1359336_1360026_-	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQE94329.1|1360131_1360557_-	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQE94331.1|1360800_1361154_+	integral membrane protein	NA	NA	NA	NA	NA
SQE94332.1|1361223_1363629_-	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
SQE94333.1|1363845_1364652_+	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
SQE94334.1|1364799_1365654_-	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQE94336.1|1365654_1366380_-	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.1e-17
SQE94338.1|1366443_1367376_-	manganese-binding protein	NA	NA	NA	NA	NA
SQE94341.1|1367521_1368169_+	metalloregulator ScaR	NA	NA	NA	NA	NA
SQE94343.1|1368267_1368609_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE94345.1|1368759_1369455_-	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQE94349.1|1369473_1369725_-	membrane protein	NA	NA	NA	NA	NA
SQE94368.1|1369724_1370279_-	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQE94381.1|1370309_1371692_-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.0	6.5e-32
SQE94397.1|1371864_1373202_-	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQE94410.1|1373534_1374494_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQE94422.1|1374569_1375268_-	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.6	9.3e-11
SQE94436.1|1375260_1375497_-	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQE94450.1|1375855_1376521_+	phage protein	NA	NA	NA	NA	NA
SQE94466.1|1376610_1376862_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQE94478.1|1377049_1377436_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQE94480.1|1377895_1378648_+	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQE94483.1|1378809_1380990_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.2	1.2e-170
SQE94486.1|1380956_1381445_-	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
SQE94488.1|1381448_1382462_-	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.7	2.5e-97
SQE94489.1|1382955_1384953_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	34.9	6.6e-86
>prophage 6
LS483322	Streptococcus pyogenes strain NCTC12066 genome assembly, chromosome: 1	1744145	1393298	1399333	1744145		Streptococcus_phage(100.0%)	8	NA	NA
SQE94497.1|1393298_1394126_+	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.1	9.3e-127
SQE94498.1|1394199_1394556_-	arsenate reductase	NA	M1PLC0	Streptococcus_phage	66.7	2.8e-40
SQE94500.1|1394855_1395485_+	copper homeostasis protein	NA	NA	NA	NA	NA
SQE94502.1|1395531_1395924_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQE94504.1|1395950_1396814_-	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	3.8e-115
SQE94505.1|1396818_1397142_-	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQE94506.1|1397804_1398680_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	44.8	3.7e-65
SQE94509.1|1398697_1399333_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	1.2e-65
>prophage 7
LS483322	Streptococcus pyogenes strain NCTC12066 genome assembly, chromosome: 1	1744145	1661713	1682167	1744145		Streptococcus_phage(52.94%)	24	NA	NA
SQE94858.1|1661713_1663696_-	DNA mismatch repair protein	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	2.3e-62
SQE94859.1|1663790_1664936_-	DNA integration/recombination/inversion protein	NA	A0A1X9I5Y5	Streptococcus_phage	44.9	6.0e-84
SQE94860.1|1665278_1666244_-	Protein of uncharacterised function (DUF3644)	NA	A0A0N9RUA4	Staphylococcus_phage	51.1	9.3e-86
SQE94861.1|1667533_1668301_-	repressor protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
SQE94862.1|1668454_1668661_+	Cro/CI family phage transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
SQE94863.1|1668694_1669462_+	BRO family, N-terminal domain protein	NA	A0A0A7S0G2	Clostridium_phage	53.7	5.0e-26
SQE94864.1|1669471_1670083_+	Phage antirepressor protein	NA	A0A1W6JPC3	Staphylococcus_phage	47.4	2.8e-43
SQE94865.1|1670103_1670511_+	phage protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
SQE94866.1|1670523_1671153_+	phage protein	NA	R9QNB1	Lactococcus_phage	43.0	9.5e-31
SQE94867.1|1671397_1671730_+	phage protein	NA	NA	NA	NA	NA
SQE94868.1|1671726_1671867_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE94869.1|1671847_1672045_+	phage protein	NA	NA	NA	NA	NA
SQE94870.1|1672057_1672420_+	phage protein	NA	NA	NA	NA	NA
SQE94871.1|1672416_1672746_+	phage protein	NA	NA	NA	NA	NA
SQE94872.1|1672748_1673021_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
SQE94873.1|1673021_1673918_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	74.5	8.8e-123
SQE94874.1|1673898_1675536_+	phage/plasmid primase, P4 family, C-terminal domain protein	NA	A0A1X9I717	Streptococcus_phage	82.1	1.8e-259
SQE94875.1|1675822_1675996_+	Uncharacterised protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	6.6e-11
SQE94876.1|1676176_1676686_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	61.5	2.1e-28
SQE94877.1|1676760_1677249_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.3	1.2e-44
SQE94878.1|1677653_1678016_+	phage protein	NA	NA	NA	NA	NA
SQE94879.1|1677990_1678374_+	phage protein	NA	Q938L8	Temperate_phage	41.7	2.9e-14
SQE94880.1|1678579_1679215_+	phage protein	NA	NA	NA	NA	NA
SQE94881.1|1679611_1682167_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	23.2	4.0e-43
