The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483320	Streptococcus pyogenes strain NCTC5164 genome assembly, chromosome: 1	1921169	36227	47345	1921169	transposase	Synechococcus_phage(33.33%)	7	NA	NA
SQE89654.1|36227_40001_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.4	3.0e-39
SQE89655.1|40234_41689_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	3.7e-54
SQE89656.1|41716_42739_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	42.0	1.4e-63
SQE89657.1|42906_43461_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	2.6e-24
SQE89658.1|43644_45192_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	51.3	3.4e-45
SQE89659.1|45261_46125_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE89660.1|46220_47345_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
>prophage 2
LS483320	Streptococcus pyogenes strain NCTC5164 genome assembly, chromosome: 1	1921169	332967	338999	1921169		Streptococcus_phage(100.0%)	9	NA	NA
SQE89926.1|332967_333603_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.0e-65
SQE89927.1|333620_334496_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
SQE89928.1|334514_334754_+	Tpl protein	NA	NA	NA	NA	NA
SQE89929.1|335157_335481_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQE89930.1|335485_336349_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.3	1.9e-114
SQE89931.1|336375_336768_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQE89932.1|336814_337444_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQE89933.1|337741_338098_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.8e-39
SQE89934.1|338171_338999_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.3	5.8e-129
>prophage 3
LS483320	Streptococcus pyogenes strain NCTC5164 genome assembly, chromosome: 1	1921169	347346	390100	1921169	bacteriocin,tRNA,protease,transposase	Mycobacterium_phage(18.18%)	49	NA	NA
SQE89938.1|347346_349344_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.0	1.3e-86
SQE89939.1|349838_350852_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.4	5.5e-97
SQE89940.1|350855_351344_+	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
SQE89941.1|351310_353491_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.2	9.5e-171
SQE89942.1|353694_354447_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQE89943.1|354903_355356_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQE89944.1|355543_355795_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQE89945.1|355889_356591_-	phage protein	NA	NA	NA	NA	NA
SQE89946.1|357269_357602_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE89947.1|357641_357767_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE89948.1|357903_358602_-	exotoxin J	NA	NA	NA	NA	NA
SQE89949.1|358870_359527_-	phage protein	NA	NA	NA	NA	NA
SQE89950.1|359886_360123_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQE89951.1|360115_360814_+	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.2	1.2e-10
SQE89952.1|360889_361849_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQE89953.1|362181_363519_+	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQE89954.1|363691_365074_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.0	8.5e-32
SQE89955.1|365107_365662_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQE89956.1|365661_365913_+	membrane protein	NA	NA	NA	NA	NA
SQE89957.1|365932_366628_+	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQE89958.1|366778_367120_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE89959.1|367218_367866_-	metalloregulator ScaR	NA	NA	NA	NA	NA
SQE89960.1|368011_368944_+	manganese-binding protein	NA	NA	NA	NA	NA
SQE89961.1|369007_369733_+	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.1e-17
SQE89962.1|369733_370588_+	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQE89963.1|370734_371541_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.9e-20
SQE89964.1|371757_374163_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
SQE89965.1|374233_374587_-	integral membrane protein	NA	NA	NA	NA	NA
SQE89966.1|374830_375256_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQE89967.1|375361_376051_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQE89968.1|376375_377104_+	uridylate kinase	NA	NA	NA	NA	NA
SQE89969.1|377132_377690_+	ribosome recycling factor	NA	NA	NA	NA	NA
SQE89970.1|377798_378656_+	s1 RNA binding domain	NA	NA	NA	NA	NA
SQE89971.1|378728_379238_+	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQE89972.1|379234_379450_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQE89973.1|379605_380775_+	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.5e-16
SQE89974.1|381088_382861_+	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQE89975.1|383019_384072_+	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQE89976.1|384117_384693_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQE89977.1|384851_385349_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQE89978.1|385329_385737_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQE89979.1|385856_386753_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQE89980.1|386772_387249_+	phosphohydrolase	NA	NA	NA	NA	NA
SQE89981.1|387554_387809_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE89982.1|388206_388452_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQE89983.1|388466_388649_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQE89984.1|388986_389136_-|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQE89985.1|389132_389555_-|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
SQE89986.1|389872_390100_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 4
LS483320	Streptococcus pyogenes strain NCTC5164 genome assembly, chromosome: 1	1921169	526623	557960	1921169	bacteriocin,tRNA,transposase	Streptococcus_phage(50.0%)	29	NA	NA
SQE90122.1|526623_527970_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.1e-55
SQE90123.1|528383_529274_+	P-loop ATPase protein family protein	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
SQE90124.1|529270_530248_+	transporter	NA	A1IMD5	Streptococcus_phage	74.2	1.2e-138
SQE90125.1|530244_531156_+	sporulation Regulator WhiA C terminal domain-containing protein	NA	Q7AWZ3	Streptococcus_phage	64.0	1.1e-104
SQE90126.1|531483_531897_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90127.1|532194_532440_+|transposase	truncated transposase	transposase	NA	NA	NA	NA
SQE90128.1|532397_532781_+|transposase	transposase	transposase	Q9MBM9	Staphylococcus_prophage	39.7	3.9e-19
SQE90129.1|532957_534091_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE90130.1|534095_534317_+	hupothetical protein	NA	NA	NA	NA	NA
SQE90131.1|534537_535191_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	33.0	4.0e-24
SQE90132.1|536023_537442_+	dipeptidase	NA	NA	NA	NA	NA
SQE90133.1|537593_539141_+	high-affinity zinc uptake system protein	NA	NA	NA	NA	NA
SQE90134.1|539291_540014_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE90135.1|540033_541233_+	tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA	NA
SQE90136.1|541329_541590_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQE90137.1|541704_542646_-	DHH family protein	NA	NA	NA	NA	NA
SQE90138.1|543039_543489_+	flavodoxin	NA	NA	NA	NA	NA
SQE90139.1|543663_543948_+	chorismate mutase	NA	NA	NA	NA	NA
SQE90140.1|543940_545203_+	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	50.3	1.2e-93
SQE90141.1|545317_545665_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQE90142.1|546679_547249_+	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA	NA
SQE90143.1|547249_549202_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	46.2	8.9e-144
SQE90144.1|549569_551294_+	septation ring formation regulator	NA	NA	NA	NA	NA
SQE90145.1|551425_551884_-	hypothetical cytosolic protein	NA	W6LLD2	Streptococcus_phage	39.1	1.8e-18
SQE90146.1|552116_553424_+	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
SQE90147.1|554193_554355_+|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
SQE90148.1|554576_555527_+	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQE90149.1|555523_556582_+|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
SQE90150.1|556601_557960_+|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
>prophage 5
LS483320	Streptococcus pyogenes strain NCTC5164 genome assembly, chromosome: 1	1921169	618530	629133	1921169		Streptococcus_phage(57.14%)	9	NA	NA
SQE90205.1|618530_620741_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.9	8.5e-268
SQE90206.1|620848_622012_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQE90207.1|622008_622695_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQE90208.1|622788_623955_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQE90209.1|624015_624357_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
SQE90210.1|624577_625930_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.2	7.0e-31
SQE90211.1|626017_627286_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQE90212.1|627315_627756_-	membrane protein	NA	NA	NA	NA	NA
SQE90213.1|627990_629133_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	8.3e-25
>prophage 6
LS483320	Streptococcus pyogenes strain NCTC5164 genome assembly, chromosome: 1	1921169	656089	691080	1921169	tRNA,protease,transposase,head	Bacillus_phage(25.0%)	35	NA	NA
SQE90238.1|656089_656821_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQE90239.1|656820_657813_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
SQE90240.1|657990_659049_+	regulatory protein	NA	NA	NA	NA	NA
SQE90241.1|659061_659985_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQE90242.1|660285_660954_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.7	4.8e-17
SQE90243.1|660950_661862_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQE90244.1|661858_663805_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQE90245.1|663903_664497_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.5e-11
SQE90246.1|664647_665355_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	1.9e-11
SQE90247.1|665510_665630_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQE90248.1|665926_666601_-	exotoxin J	NA	NA	NA	NA	NA
SQE90249.1|666765_667530_-	Exotoxin type C precursor	NA	Q938J1	Temperate_phage	81.6	4.9e-114
SQE90250.1|667689_668553_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE90251.1|668600_669626_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQE90252.1|670129_670306_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQE90253.1|670533_670914_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE90254.1|670913_671762_+	degV family protein	NA	NA	NA	NA	NA
SQE90255.1|671886_673095_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	5.3e-38
SQE90256.1|673091_674969_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.5	8.7e-64
SQE90257.1|675860_676271_+	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQE90258.1|676351_677746_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQE90259.1|677796_678363_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQE90260.1|678582_679233_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQE90261.1|679235_679904_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQE90262.1|679912_681145_+	two component system histidine kinase	NA	NA	NA	NA	NA
SQE90263.1|681438_682317_+	mevalonate kinase	NA	NA	NA	NA	NA
SQE90264.1|682298_683243_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQE90265.1|683235_684249_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQE90266.1|684235_685225_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQE90267.1|685454_686732_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQE90268.1|686718_687894_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQE90269.1|688114_688954_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQE90270.1|689033_689531_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	1.1e-10
SQE90271.1|689550_689721_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQE90272.1|689850_691080_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	1.7e-137
>prophage 7
LS483320	Streptococcus pyogenes strain NCTC5164 genome assembly, chromosome: 1	1921169	724214	777666	1921169	tail,integrase,portal,tRNA,terminase	Streptococcus_phage(78.85%)	68	738517:738565	778763:778811
SQE90304.1|724214_725114_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQE90305.1|725186_726425_+	GTP-binding protein HflX	NA	NA	NA	NA	NA
SQE90306.1|726408_727053_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
SQE90307.1|727067_727997_+	ribonuclease Z	NA	NA	NA	NA	NA
SQE90308.1|727996_728761_+	short chain dehydrogenase	NA	NA	NA	NA	NA
SQE90309.1|728757_730968_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.2	6.6e-71
SQE90310.1|731117_731636_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	42.4	3.9e-30
SQE90311.1|731716_732400_+	DNA replication protein DnaD	NA	Q938N2	Temperate_phage	36.8	2.2e-09
SQE90312.1|732396_733053_+	endonuclease III	NA	NA	NA	NA	NA
SQE90313.1|733124_733811_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SQE90314.1|733800_734589_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQE90315.1|734628_735735_+	FAD dependent oxidoreductase family protein	NA	NA	NA	NA	NA
SQE90316.1|735792_736662_+	glucose-1-phosphate thymidyl transferase	NA	K7QKA7	Escherichia_phage	64.6	2.4e-101
SQE90317.1|736661_737255_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
SQE90318.1|737498_738539_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.1e-68
738517:738565	attL	AAACTCAAGAAGTGATTAAATAAAACATTAAAGAACCTTGTCATATCAA	NA	NA	NA	NA
SQE90319.1|738621_739761_-|integrase	phage integrase	integrase	A1EAB7	Streptococcus_phage	56.3	1.2e-119
SQE90320.1|739888_740155_-	phage protein	NA	NA	NA	NA	NA
SQE90321.1|740166_740553_-	phage protein	NA	M1PFJ2	Streptococcus_phage	55.5	3.3e-34
SQE90322.1|740555_740906_-	DNA-binding phage protein	NA	C5J980	Streptococcus_phage	62.6	1.1e-33
SQE90323.1|741213_741429_+	phage protein	NA	M1Q1B4	Streptococcus_phage	79.7	1.2e-25
SQE90324.1|741439_741706_+	phage protein	NA	A0A1S5SC19	Streptococcus_phage	66.3	1.1e-23
SQE90325.1|741640_742447_-	protein Ymh	NA	A0A1S5SBU1	Streptococcus_phage	82.1	7.9e-123
SQE90326.1|742588_742828_-	phage protein	NA	NA	NA	NA	NA
SQE90327.1|742994_743180_+	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQE90328.1|743257_743569_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	80.4	8.2e-44
SQE90329.1|743570_743741_+	phage protein	NA	A7J273	Streptococcus_phage	89.3	1.2e-20
SQE90330.1|743733_743937_+	phage protein	NA	NA	NA	NA	NA
SQE90331.1|743933_744320_+	phage protein	NA	A7J274	Streptococcus_phage	89.0	3.3e-58
SQE90332.1|744316_744454_+	phage protein	NA	NA	NA	NA	NA
SQE90333.1|744463_744814_+	phage protein	NA	NA	NA	NA	NA
SQE90334.1|744810_745014_+	phage protein	NA	A7J276	Streptococcus_phage	98.5	1.6e-32
SQE90335.1|745102_745402_+	phage protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
SQE90336.1|745401_746559_+	phage protein	NA	A7J278	Streptococcus_phage	97.9	8.8e-216
SQE90337.1|746573_747131_+	phage protein	NA	D2J040	Enterococcus_phage	58.5	3.3e-51
SQE90338.1|747173_749096_+	phage DNA polymerase	NA	A7J280	Streptococcus_phage	99.1	0.0e+00
SQE90339.1|749100_751485_+	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	94.8	4.8e-277
SQE90340.1|751870_752146_+	phage protein	NA	A7J283	Streptococcus_phage	97.8	7.7e-46
SQE90341.1|752142_753465_+	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.7	5.1e-252
SQE90342.1|753465_753636_+	phage protein	NA	A7J285	Streptococcus_phage	92.3	9.0e-21
SQE90343.1|753628_753901_+	phage membrane protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
SQE90344.1|753903_754050_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90345.1|754033_754450_+	phage protein	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
SQE90346.1|754539_754992_+|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
SQE90347.1|754981_756259_+|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	99.8	3.1e-246
SQE90348.1|756274_757807_+|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.8	4.5e-292
SQE90349.1|757766_759215_+	phage protein	NA	A7J293	Streptococcus_phage	99.8	1.2e-278
SQE90350.1|759314_759431_+	phage membrane protein	NA	A7J294	Streptococcus_phage	100.0	2.0e-08
SQE90351.1|759435_759702_+	putative phage associated protein	NA	Q938K9	Temperate_phage	96.6	2.9e-37
SQE90352.1|759869_760439_+	phage protein	NA	A7J296	Streptococcus_phage	100.0	1.9e-83
SQE90353.1|760451_761339_+	phage protein	NA	A7J297	Streptococcus_phage	100.0	2.1e-161
SQE90354.1|761350_761707_+	phage protein	NA	A7J298	Streptococcus_phage	100.0	4.6e-59
SQE90355.1|761717_761996_+	phage protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
SQE90356.1|761992_762337_+	phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
SQE90357.1|762340_762700_+	phage protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
SQE90358.1|762711_763311_+|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
SQE90359.1|763364_763820_+	phage protein	NA	A7J2A3	Streptococcus_phage	98.7	1.2e-75
SQE90360.1|763894_764128_+	phage protein	NA	A7J2A4	Streptococcus_phage	97.4	6.4e-33
SQE90361.1|764142_768525_+|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	74.0	1.3e-224
SQE90362.1|768536_769379_+	phage protein	NA	A7J2A6	Streptococcus_phage	97.5	3.9e-157
SQE90363.1|769388_771371_+	phage protein	NA	A7J2A7	Streptococcus_phage	93.9	0.0e+00
SQE90364.1|771370_772480_+	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	71.3	1.3e-120
SQE90365.1|772489_774508_+	Phage infection protein	NA	Q938J9	Temperate_phage	58.8	3.9e-126
SQE90366.1|774516_774678_+	phage protein	NA	NA	NA	NA	NA
SQE90367.1|774680_775292_+	phage protein	NA	Q938J7	Temperate_phage	91.1	8.8e-82
SQE90368.1|775302_775623_+	Uncharacterised protein	NA	A3F663	Streptococcus_phage	99.1	1.2e-50
SQE90369.1|775635_775968_+	N-acetylmuramoyl-L-alanine amidase	NA	A3F664	Streptococcus_phage	98.2	2.8e-50
SQE90370.1|775969_776722_+	phage-associated cell wall hydrolase	NA	A3F665	Streptococcus_phage	96.8	1.0e-140
SQE90371.1|776886_777666_+	exotoxin I precursor	NA	A0A075M4C7	Staphylococcus_phage	32.3	4.6e-27
778763:778811	attR	AAACTCAAGAAGTGATTAAATAAAACATTAAAGAACCTTGTCATATCAA	NA	NA	NA	NA
>prophage 8
LS483320	Streptococcus pyogenes strain NCTC5164 genome assembly, chromosome: 1	1921169	972273	1104016	1921169	holin,tail,integrase,head,capsid,tRNA,portal,transposase,terminase	Streptococcus_phage(61.98%)	177	1005819:1005835	1113412:1113428
SQE90559.1|972273_973158_-|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
SQE90560.1|973273_974614_-	Serine/threonine-protein kinase MRCK beta	NA	NA	NA	NA	NA
SQE90561.1|974710_975667_-	membrane protein	NA	NA	NA	NA	NA
SQE90562.1|975677_976274_-	type I restriction-modification system specificty subunit	NA	NA	NA	NA	NA
SQE90563.1|976365_979002_-	permease family protein	NA	NA	NA	NA	NA
SQE90564.1|979016_979718_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.5	1.7e-36
SQE90565.1|979835_980378_+	bacterial regulatory s, tetR family protein	NA	NA	NA	NA	NA
SQE90566.1|980520_981162_-	bacterial regulatory s, gntR family protein	NA	NA	NA	NA	NA
SQE90567.1|981324_981813_-	general stress protein, Gls24 family	NA	NA	NA	NA	NA
SQE90568.1|981823_982024_-	csbD-like family protein	NA	J7KJ36	Streptococcus_phage	51.5	2.3e-07
SQE90569.1|982064_982604_-	response regulator	NA	NA	NA	NA	NA
SQE90570.1|982616_982805_-	membrane protein	NA	NA	NA	NA	NA
SQE90571.1|982815_983403_-	membrane protein	NA	NA	NA	NA	NA
SQE90572.1|983463_983712_-	transglycosylase associated family protein	NA	NA	NA	NA	NA
SQE90573.1|984074_986393_-	DNA helicase II / ATP-dependent DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.3	7.1e-132
SQE90574.1|986922_988245_+	amino acid symporter	NA	NA	NA	NA	NA
SQE90575.1|988364_989600_+	cation diffusion facilitator transporter family protein	NA	NA	NA	NA	NA
SQE90576.1|989969_990743_-	protein B	NA	NA	NA	NA	NA
SQE90577.1|991111_991948_-	polar amino acid ABC uptake transporter substrate binding protein	NA	NA	NA	NA	NA
SQE90578.1|991963_992593_-	histidine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	1.3e-27
SQE90579.1|992602_993244_-	histidine transporter permease	NA	NA	NA	NA	NA
SQE90580.1|993350_993686_-	phosphonoacetate hydrolase	NA	NA	NA	NA	NA
SQE90581.1|993881_995696_-	glucosamine-fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.7	1.2e-97
SQE90582.1|995871_996429_-	signal peptidase I	NA	NA	NA	NA	NA
SQE90583.1|996646_998149_-	pyruvate kinase	NA	NA	NA	NA	NA
SQE90584.1|998211_999225_-	6-phosphofructokinase	NA	NA	NA	NA	NA
SQE90585.1|999304_1002415_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.8	5.4e-119
SQE90586.1|1002599_1002971_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE90587.1|1002970_1003669_+	ABC transporter family protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
SQE90588.1|1003678_1004464_+	ABC transporter permease protein	NA	NA	NA	NA	NA
SQE90589.1|1004590_1005205_-	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
SQE90590.1|1005795_1005984_-	paratox	NA	A3F673	Streptococcus_phage	83.1	1.3e-20
1005819:1005835	attL	CCATCACTTCTTCCACT	NA	NA	NA	NA
SQE90591.1|1006221_1007022_+	streptodornase	NA	NA	NA	NA	NA
SQE90592.1|1007292_1007727_+	phage membrane protein	NA	NA	NA	NA	NA
SQE90593.1|1007796_1009002_-	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	84.3	1.7e-206
SQE90594.1|1008998_1009109_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	94.4	3.0e-09
SQE90595.1|1009117_1009345_-	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQE90596.1|1009341_1009617_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQE90597.1|1009626_1010244_-	phage protein	NA	Q938J7	Temperate_phage	89.3	2.7e-78
SQE90598.1|1010246_1010408_-	phage protein	NA	NA	NA	NA	NA
SQE90599.1|1010421_1012332_-	phage infection protein	NA	Q938J9	Temperate_phage	67.8	1.3e-120
SQE90600.1|1012344_1013352_-	phage hyaluronidase	NA	A7J2A8	Streptococcus_phage	71.7	1.4e-137
SQE90601.1|1013348_1015400_-	phage protein	NA	A3F656	Streptococcus_phage	84.6	0.0e+00
SQE90602.1|1015396_1016176_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	55.5	1.9e-68
SQE90603.1|1016207_1019474_-	tape measure domain protein	NA	U6E979	Streptococcus_phage	30.4	1.6e-04
SQE90604.1|1019488_1019818_-	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	41.5	2.0e-11
SQE90605.1|1019859_1020219_-	phage protein	NA	D7RWD6	Brochothrix_phage	44.5	4.3e-20
SQE90606.1|1020271_1020919_-|tail	phage major tail protein	tail	D7RWD5	Brochothrix_phage	52.0	1.4e-40
SQE90607.1|1020928_1021318_-	phage protein	NA	Q38611	Lactococcus_phage	68.2	3.5e-44
SQE90608.1|1021314_1021680_-	phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	7.7e-17
SQE90609.1|1021660_1021969_-	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
SQE90610.1|1021965_1022319_-	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
SQE90611.1|1022332_1022575_-	phage protein	NA	NA	NA	NA	NA
SQE90612.1|1022584_1023661_-|head	phage head protein	head	A0A2H4J022	uncultured_Caudovirales_phage	56.0	5.5e-103
SQE90613.1|1023660_1024041_-	structural protein	NA	A0A0K2CNR0	Brevibacillus_phage	37.1	5.8e-07
SQE90614.1|1024050_1024584_-	phage protein	NA	A0A141E0S7	Streptococcus_phage	83.9	1.4e-14
SQE90615.1|1024718_1024985_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	84.1	1.7e-34
SQE90616.1|1025044_1025224_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90617.1|1025214_1026840_-|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	U6E9F1	Streptococcus_phage	43.8	1.1e-46
SQE90618.1|1026820_1028323_-|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.3	4.1e-141
SQE90619.1|1028334_1029642_-|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.2	5.9e-184
SQE90620.1|1029619_1030051_-|terminase	phage terminase small subunit	terminase	A0A1S5SCD2	Streptococcus_phage	72.6	1.8e-49
SQE90621.1|1030619_1031060_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	97.3	7.2e-78
SQE90622.1|1031330_1031966_-	phage protein	NA	L0P368	Streptococcus_phage	67.9	5.5e-87
SQE90623.1|1031965_1032367_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90624.1|1032379_1032580_-	Uncharacterised protein	NA	A0A0E3T873	Gordonia_phage	45.3	4.6e-08
SQE90625.1|1032584_1032869_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
SQE90626.1|1032865_1033036_-	phage protein	NA	Q938M0	Temperate_phage	100.0	8.5e-11
SQE90627.1|1033032_1033446_-	phage protein	NA	Q938M1	Temperate_phage	62.4	4.6e-34
SQE90628.1|1033429_1033717_-	phage protein	NA	J7KDH9	Streptococcus_phage	75.0	5.1e-32
SQE90629.1|1033716_1033962_-	phage protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	93.8	4.8e-39
SQE90630.1|1033958_1034315_-	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	97.5	2.1e-59
SQE90631.1|1034311_1034752_-	phage protein	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.9	4.5e-80
SQE90632.1|1034960_1035380_-	single-stranded DNA-binding protein ssb	NA	Q938M7	Temperate_phage	97.1	3.1e-70
SQE90633.1|1035372_1036047_-	Single-stranded DNA-binding protein	NA	Q938M8	Temperate_phage	97.3	2.0e-103
SQE90634.1|1036047_1036530_-	phage protein	NA	Q938M9	Temperate_phage	98.8	1.6e-49
SQE90635.1|1036550_1036805_-	phage protein	NA	Q938N0	Temperate_phage	97.6	1.8e-41
SQE90636.1|1036785_1037142_-	phage protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	99.2	3.0e-50
SQE90637.1|1037152_1037290_-	phage protein	NA	J7KBQ4	Streptococcus_phage	75.7	3.5e-07
SQE90638.1|1037289_1038132_-	phage DNA replication protein	NA	A0A1S5S7L9	Streptococcus_phage	40.7	1.3e-48
SQE90639.1|1038141_1039044_-	DNA replication protein dnaD	NA	J7KBV5	Streptococcus_phage	87.5	3.0e-118
SQE90640.1|1039057_1039372_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	94.2	5.9e-50
SQE90641.1|1039387_1039522_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	95.5	9.6e-18
SQE90642.1|1039518_1039815_-	phage protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	84.7	2.3e-43
SQE90643.1|1039892_1040078_-	phage protein	NA	J7KH19	Streptococcus_phage	68.9	4.6e-18
SQE90644.1|1040221_1040440_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90645.1|1040425_1040557_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90646.1|1040576_1040783_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90647.1|1040969_1041179_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90648.1|1041288_1041489_-	helix-turn-helix family protein	NA	A0A141E205	Streptococcus_phage	59.6	2.7e-08
SQE90649.1|1041586_1042270_+	phage protein	NA	A0A1X9I5M7	Streptococcus_phage	59.4	1.2e-71
SQE90650.1|1042227_1042362_-	Uncharacterised protein	NA	X2KTZ3	Streptococcus_phage	79.5	3.4e-07
SQE90651.1|1042397_1042556_-	Uncharacterised protein	NA	J7KH24	Streptococcus_phage	92.3	3.4e-22
SQE90652.1|1042651_1042753_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90653.1|1042911_1043748_+	phage transcriptional repressor	NA	A0A097PBE5	Streptococcus_pyogenes_phage	88.0	1.8e-125
SQE90654.1|1043760_1044570_+	phage protein	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
SQE90655.1|1044819_1045908_+|integrase	integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	99.4	4.2e-204
SQE90656.1|1046165_1046348_-	phage protein	NA	A3F673	Streptococcus_phage	71.7	1.0e-17
SQE90657.1|1046546_1046756_-	repressor C1	NA	A3F668	Streptococcus_phage	100.0	1.2e-30
SQE90658.1|1046909_1047056_+	Uncharacterised protein	NA	A3F667	Streptococcus_phage	97.9	4.0e-17
SQE90659.1|1047196_1047448_+	Uncharacterised protein	NA	A3F666	Streptococcus_phage	96.4	2.8e-42
SQE90660.1|1047711_1047951_+	Phage protein	NA	NA	NA	NA	NA
SQE90661.1|1048008_1048365_+	phage protein	NA	NA	NA	NA	NA
SQE90662.1|1048480_1049689_-	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	87.5	2.9e-214
SQE90663.1|1049685_1049796_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.2	1.8e-09
SQE90664.1|1049804_1050032_-	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	7.6e-31
SQE90665.1|1050028_1050301_-	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQE90666.1|1050312_1050945_-	phage protein	NA	Q938J7	Temperate_phage	49.5	2.0e-44
SQE90667.1|1050947_1051376_-	phage protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
SQE90668.1|1051387_1053292_-	Phage infection protein	NA	Q938J9	Temperate_phage	83.7	1.1e-210
SQE90669.1|1053301_1054309_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	64.9	9.9e-115
SQE90670.1|1054305_1056357_-	phage protein	NA	A3F656	Streptococcus_phage	85.3	0.0e+00
SQE90671.1|1056353_1057124_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	87.5	2.1e-128
SQE90672.1|1057136_1061237_-|tail	tail protein	tail	A3F654	Streptococcus_phage	68.4	0.0e+00
SQE90673.1|1061280_1061379_-	Uncharacterised protein	NA	A3F653	Streptococcus_phage	96.9	7.0e-10
SQE90674.1|1061462_1061765_-	Uncharacterised protein	NA	A3F652	Streptococcus_phage	96.0	1.8e-48
SQE90675.1|1061857_1062442_-|tail	major tail protein - phage associated	tail	A3F651	Streptococcus_phage	90.2	3.1e-92
SQE90676.1|1062453_1062834_-	Uncharacterised protein	NA	A3F650	Streptococcus_phage	99.2	7.4e-63
SQE90677.1|1062826_1063225_-	Uncharacterised protein	NA	A3F649	Streptococcus_phage	100.0	2.9e-70
SQE90678.1|1063226_1063589_-	Uncharacterised protein	NA	A3F648	Streptococcus_phage	97.5	1.1e-60
SQE90679.1|1063581_1063890_-	Uncharacterised protein	NA	A3F647	Streptococcus_phage	99.0	1.2e-47
SQE90680.1|1063889_1064063_-	Uncharacterised protein	NA	A3F646	Streptococcus_phage	94.7	6.4e-22
SQE90681.1|1064076_1065210_-|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A3F645	Streptococcus_phage	96.8	3.2e-202
SQE90682.1|1065226_1066033_-	scaffolding protein	NA	A3F644	Streptococcus_phage	98.1	4.6e-147
SQE90683.1|1066013_1067201_-|portal	HK97 family phage portal protein	portal	A3F643	Streptococcus_phage	96.2	5.6e-218
SQE90684.1|1067353_1067566_-	Uncharacterised protein	NA	A3F642	Streptococcus_phage	97.1	1.4e-34
SQE90685.1|1067568_1069299_-|terminase	putative phage terminase, large subunit	terminase	A3F641	Streptococcus_phage	97.0	0.0e+00
SQE90686.1|1069311_1069629_-	Uncharacterised protein	NA	A3F640	Streptococcus_phage	99.0	3.9e-49
SQE90687.1|1069769_1070075_-	HNH endonuclease	NA	A3F639	Streptococcus_phage	96.0	3.8e-54
SQE90688.1|1070067_1070454_-	Uncharacterised protein	NA	A3F638	Streptococcus_phage	93.0	1.4e-64
SQE90689.1|1070479_1070683_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90690.1|1070740_1071034_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90691.1|1071187_1071763_-	phage associated recombinase	NA	A3F636	Streptococcus_phage	99.5	7.4e-107
SQE90692.1|1071922_1072324_-	phage 31 late promoter transcriptional activator	NA	A3F635	Streptococcus_phage	100.0	2.7e-71
SQE90693.1|1072338_1073166_-	B-cell receptor associated protein-like protein	NA	A3F634	Streptococcus_phage	100.0	1.3e-117
SQE90694.1|1073168_1073507_-	immunity repressor protein - phage associated	NA	A3F633	Streptococcus_phage	92.9	1.1e-54
SQE90695.1|1073503_1073785_-	Uncharacterised protein	NA	A3F632	Streptococcus_phage	92.2	4.5e-33
SQE90696.1|1073799_1074192_-	single strand binding protein	NA	A0A1P8VVS8	Streptococcus_phage	70.3	6.9e-48
SQE90697.1|1074188_1074410_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90698.1|1074406_1074892_-	phage protein	NA	A0A1S5S9L5	Streptococcus_phage	41.4	5.6e-23
SQE90699.1|1074896_1075529_-	phage protein	NA	L0P368	Streptococcus_phage	65.7	5.9e-81
SQE90700.1|1075530_1075800_-	phage membrane protein	NA	A7J287	Streptococcus_phage	80.9	1.4e-28
SQE90701.1|1075796_1075967_-	phage protein	NA	Q938M0	Temperate_phage	55.4	2.7e-09
SQE90702.1|1075963_1076407_-	phage protein	NA	A0A1C9LX52	Streptococcus_phage	55.0	1.6e-32
SQE90703.1|1076423_1076549_-	phage protein	NA	NA	NA	NA	NA
SQE90704.1|1076562_1076790_-	phage protein	NA	C5J991	Streptococcus_phage	49.3	9.3e-13
SQE90705.1|1076789_1077602_-	phage DNA replication protein	NA	A0A1P8VVV9	Streptococcus_phage	77.6	5.2e-122
SQE90706.1|1077601_1078363_-	dnaD and phage-associated domain protein	NA	A0A220GFI5	Streptococcus_phage	56.1	9.1e-28
SQE90707.1|1078355_1079696_-	DNA polymerase III delta prime subunit	NA	A0A1P8VVQ6	Streptococcus_phage	84.7	7.1e-209
SQE90708.1|1079682_1079871_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90709.1|1079991_1080183_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90710.1|1080275_1080533_-	phage protein	NA	A3F618	Streptococcus_phage	98.8	5.4e-41
SQE90711.1|1080606_1081326_-	antirepressor - phage associated	NA	A3F617	Streptococcus_phage	78.7	4.6e-106
SQE90712.1|1081377_1081878_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90713.1|1081997_1082132_-	Uncharacterised protein	NA	A3F616	Streptococcus_phage	95.5	2.4e-16
SQE90714.1|1082205_1082418_-	phage protein	NA	M1Q1B4	Streptococcus_phage	52.9	1.7e-13
SQE90715.1|1082452_1082728_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90716.1|1083016_1083367_+	repressor - phage associated	NA	A0A1S5SAD3	Streptococcus_phage	63.5	1.2e-35
SQE90717.1|1083370_1083763_+	phage protein	NA	A3F612	Streptococcus_phage	68.7	2.2e-38
SQE90718.1|1083773_1084514_+	phage protein	NA	A3F611	Streptococcus_phage	100.0	1.6e-130
SQE90719.1|1084824_1086021_+|integrase	phage associated integrase	integrase	A3F610	Streptococcus_phage	99.0	3.9e-227
SQE90720.1|1086216_1086837_+	phage protein	NA	NA	NA	NA	NA
SQE90721.1|1087093_1089358_-	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
SQE90722.1|1089392_1090886_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
SQE90723.1|1091000_1092020_-	LacI family transcription regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	1.3e-16
SQE90724.1|1092263_1093511_+	maltose/maltodextrin-binding protein	NA	NA	NA	NA	NA
SQE90725.1|1093784_1095146_+	maltose/maltodextrin ABC transport system permease	NA	NA	NA	NA	NA
SQE90726.1|1095145_1095982_+	maltose transport system permease	NA	NA	NA	NA	NA
SQE90727.1|1096355_1096562_+|transposase	truncated transposase	transposase	NA	NA	NA	NA
SQE90728.1|1096558_1096942_+|transposase	transposase	transposase	Q9MBM9	Staphylococcus_prophage	40.5	5.1e-19
SQE90729.1|1097455_1098439_-	alpha/beta fold family hydrolase	NA	NA	NA	NA	NA
SQE90730.1|1098469_1099720_-	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA	NA
SQE90731.1|1099712_1099952_-	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
SQE90732.1|1099969_1101226_-	Protein dltB	NA	NA	NA	NA	NA
SQE90733.1|1101222_1102761_-	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	28.1	3.5e-42
SQE90734.1|1102772_1102916_-	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA	NA
SQE90735.1|1103152_1104016_-|transposase	transposase	transposase	NA	NA	NA	NA
1113412:1113428	attR	CCATCACTTCTTCCACT	NA	NA	NA	NA
>prophage 9
LS483320	Streptococcus pyogenes strain NCTC5164 genome assembly, chromosome: 1	1921169	1119720	1169501	1921169	tRNA,protease,transposase	Bacillus_phage(23.08%)	46	NA	NA
SQE90751.1|1119720_1120236_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE90752.1|1120256_1121063_+|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	50.4	8.3e-64
SQE90753.1|1121362_1122235_-	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQE90754.1|1122458_1123769_+	membrane protein	NA	NA	NA	NA	NA
SQE90755.1|1123846_1124092_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE90756.1|1124570_1124894_+|transposase	transposase	transposase	A0A1P8CWQ3	Bacillus_phage	46.9	6.1e-18
SQE90757.1|1124910_1125642_-	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQE90758.1|1125756_1126122_+	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQE90759.1|1126241_1127462_-	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQE90760.1|1127835_1129320_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQE90761.1|1129424_1129826_-	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQE90762.1|1129910_1130423_-	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	95.9	9.6e-90
SQE90763.1|1130581_1130692_-	phosphorylase Pnp/Udp family protein	NA	NA	NA	NA	NA
SQE90764.1|1130730_1132086_-|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	D0R096	Streptococcus_phage	98.0	3.1e-252
SQE90765.1|1132167_1133619_-	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQE90766.1|1133826_1134318_-	shikimate kinase	NA	NA	NA	NA	NA
SQE90767.1|1134310_1135594_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQE90768.1|1135704_1136670_-	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQE90769.1|1136671_1137532_-	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQE90770.1|1137546_1138830_-	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQE90771.1|1138838_1139381_-	acetyltransferase family protein	NA	NA	NA	NA	NA
SQE90772.1|1139618_1140524_-	protein G-related alpha 2M-bindingprotein	NA	NA	NA	NA	NA
SQE90773.1|1140881_1142141_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQE90774.1|1142314_1143511_-	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	9.9e-138
SQE90775.1|1144047_1146426_-	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
SQE90776.1|1146629_1147571_+	biotin-protein ligase	NA	NA	NA	NA	NA
SQE90777.1|1147833_1149504_-	DNA polymerase III subunits gamma and tau	NA	E7DN81	Pneumococcus_phage	40.6	6.6e-47
SQE90778.1|1149503_1150001_-	GAF domain-containing protein	NA	NA	NA	NA	NA
SQE90779.1|1150145_1150955_+	membrane protein	NA	NA	NA	NA	NA
SQE90780.1|1151007_1151271_-	membrane protein	NA	NA	NA	NA	NA
SQE90781.1|1151350_1151977_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	2.2e-35
SQE90782.1|1152074_1153160_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.6e-33
SQE90783.1|1153270_1154545_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQE90784.1|1154638_1156066_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQE90785.1|1156250_1157984_-	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQE90786.1|1157988_1158252_-	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQE90787.1|1158644_1158863_+	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
SQE90788.1|1158882_1161042_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.6	4.7e-263
SQE90789.1|1161245_1162205_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.2	1.8e-126
SQE90790.1|1162179_1163493_+	chloride channel protein	NA	NA	NA	NA	NA
SQE90791.1|1163588_1163834_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE90792.1|1164312_1164738_+	Transposase	NA	A0A1P8CWQ3	Bacillus_phage	44.1	2.5e-27
SQE90793.1|1164835_1165531_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQE90794.1|1165549_1166311_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQE90795.1|1166307_1166529_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQE90796.1|1166882_1169501_-|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	34.1	5.1e-62
>prophage 10
LS483320	Streptococcus pyogenes strain NCTC5164 genome assembly, chromosome: 1	1921169	1178166	1251514	1921169	holin,tail,integrase,capsid,tRNA,protease,portal,terminase,transposase	Streptococcus_phage(67.69%)	92	1207242:1207261	1248899:1248918
SQE90804.1|1178166_1179195_+|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQE90805.1|1179234_1180422_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQE90806.1|1180535_1181126_-	S11 family peptidase	NA	NA	NA	NA	NA
SQE90807.1|1181122_1181371_-	lipoprotein	NA	NA	NA	NA	NA
SQE90808.1|1181426_1181573_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90809.1|1181739_1182345_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.2	1.8e-58
SQE90810.1|1182441_1183482_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SQE90811.1|1183573_1185772_-	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.4	9.0e-52
SQE90812.1|1185776_1186439_-	comE operon 1 domain-containing protein	NA	NA	NA	NA	NA
SQE90813.1|1186638_1187541_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQE90814.1|1187545_1188679_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE90815.1|1188822_1189599_+	methyltransferase	NA	NA	NA	NA	NA
SQE90816.1|1189588_1189867_+	GIY-YIG catalytic domain-containing protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	7.9e-06
SQE90817.1|1189890_1191891_-	Kup system potassium uptake protein	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	34.0	5.8e-66
SQE90818.1|1192017_1193637_-	DEAD-box ATP-dependent RNA helicase CshA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	1.9e-59
SQE90819.1|1193943_1195488_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.0	1.8e-35
SQE90820.1|1195735_1196431_-	integral membrane family protein	NA	NA	NA	NA	NA
SQE90821.1|1196510_1197902_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
SQE90822.1|1198092_1199139_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SQE90823.1|1199239_1199836_-	recombination protein	NA	NA	NA	NA	NA
SQE90824.1|1200633_1201413_-	formate transporter	NA	NA	NA	NA	NA
SQE90825.1|1201536_1202079_-	membrane protein	NA	NA	NA	NA	NA
SQE90826.1|1202239_1202761_-	3H domain-containing protein	NA	NA	NA	NA	NA
SQE90827.1|1202867_1203563_-	phosphoglyceromutase	NA	NA	NA	NA	NA
SQE90828.1|1203801_1204737_+	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	44.8	3.0e-65
SQE90829.1|1205036_1206899_-	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	34.1	5.4e-90
1207242:1207261	attL	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQE90830.1|1207431_1207614_-	paratox	NA	A3F673	Streptococcus_phage	76.7	3.1e-19
SQE90831.1|1207853_1208612_+	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQE90832.1|1208722_1209430_+	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
SQE90833.1|1209498_1210251_-	phage-associated cell wall hydrolase	NA	A3F665	Streptococcus_phage	96.8	7.9e-141
SQE90834.1|1210256_1210367_-	putative phage membrane protein	NA	NA	NA	NA	NA
SQE90835.1|1210368_1210824_-|holin	holin	holin	A0A0M4R3G6	Streptococcus_phage	81.5	2.3e-63
SQE90836.1|1210834_1211473_-	phage protein	NA	A3F662	Streptococcus_phage	53.7	1.2e-44
SQE90837.1|1211475_1211904_-	phage protein	NA	A3F661	Streptococcus_phage	86.5	1.7e-63
SQE90838.1|1211915_1213802_-	gp58-like family protein	NA	Q938J9	Temperate_phage	86.5	1.3e-203
SQE90839.1|1213814_1214837_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	91.7	1.2e-168
SQE90840.1|1214833_1216978_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	93.1	0.0e+00
SQE90841.1|1216974_1217682_-	phage protein	NA	Q938K2	Temperate_phage	71.1	1.7e-92
SQE90842.1|1217681_1221605_-|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	48.7	1.9e-238
SQE90843.1|1221617_1221785_-	phage protein	NA	J7KBS0	Streptococcus_phage	87.3	2.9e-19
SQE90844.1|1221814_1222141_-	phage protein	NA	J7KK85	Streptococcus_phage	73.1	6.0e-37
SQE90845.1|1222193_1222802_-|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	70.5	2.3e-74
SQE90846.1|1222818_1223244_-	phage protein	NA	J7KBZ9	Streptococcus_phage	85.1	5.0e-68
SQE90847.1|1223240_1223618_-	phage protein	NA	J7KDM3	Streptococcus_phage	72.8	1.4e-45
SQE90848.1|1223614_1223962_-	phage protein	NA	J7KJ42	Streptococcus_phage	85.5	1.5e-49
SQE90849.1|1223958_1224261_-	phage protein	NA	J7KC36	Streptococcus_phage	87.0	6.1e-44
SQE90850.1|1224396_1225599_-|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	64.4	6.0e-135
SQE90851.1|1225624_1226290_-|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	77.7	4.6e-92
SQE90852.1|1226267_1227488_-|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.7	2.0e-186
SQE90853.1|1227521_1227746_-	phage protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
SQE90854.1|1227738_1227909_-	phage protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
SQE90855.1|1227905_1229660_-|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	96.2	0.0e+00
SQE90856.1|1229674_1230142_-|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
SQE90857.1|1230312_1230651_-	Phage endonuclease	NA	J7KH36	Streptococcus_phage	90.7	3.0e-55
SQE90858.1|1231235_1231676_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	99.3	1.9e-78
SQE90859.1|1231951_1232323_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90860.1|1232319_1233030_-	phage protein	NA	Q938L9	Temperate_phage	46.2	3.0e-25
SQE90861.1|1233032_1233665_-	phage protein	NA	L0P368	Streptococcus_phage	68.1	3.0e-85
SQE90862.1|1233666_1233951_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	89.4	1.4e-37
SQE90863.1|1233947_1234352_-	phage protein	NA	A3F627	Streptococcus_phage	65.2	1.6e-39
SQE90864.1|1234361_1234631_-	phage protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
SQE90865.1|1234627_1234912_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	96.8	2.2e-48
SQE90866.1|1234957_1235146_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	97.8	5.0e-20
SQE90867.1|1235142_1235499_-	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	97.5	4.6e-59
SQE90868.1|1235482_1235803_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	94.3	7.1e-51
SQE90869.1|1235799_1236213_-	phage protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	50.0	2.8e-15
SQE90870.1|1236474_1237950_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	86.7	1.7e-248
SQE90871.1|1237939_1238743_-	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	98.9	4.3e-153
SQE90872.1|1238754_1239213_-	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	99.3	5.0e-82
SQE90873.1|1239227_1240457_-	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	99.5	2.8e-236
SQE90874.1|1240558_1241239_-	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQE90875.1|1241239_1241722_-	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
SQE90876.1|1241869_1242184_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	96.2	7.0e-51
SQE90877.1|1242199_1242337_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	95.6	6.4e-17
SQE90878.1|1242338_1242650_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.6	1.4e-43
SQE90879.1|1242727_1242913_-	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQE90880.1|1243079_1243319_+	phage protein	NA	NA	NA	NA	NA
SQE90881.1|1243469_1243679_+	phage protein	NA	NA	NA	NA	NA
SQE90882.1|1243637_1243883_-	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
SQE90883.1|1243931_1244738_+	protein Ymh	NA	A0A1S5SBU1	Streptococcus_phage	82.1	7.9e-123
SQE90884.1|1244672_1244939_-	phage protein	NA	A0A1S5SC19	Streptococcus_phage	66.3	1.1e-23
SQE90885.1|1244949_1245189_-	Cro/CI family phage transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	98.7	1.4e-35
SQE90886.1|1245282_1245882_+	phage protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
SQE90887.1|1245911_1246070_-	phage protein	NA	A0A097PAP2	Streptococcus_pyogenes_phage	100.0	4.8e-24
SQE90888.1|1246166_1246268_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE90889.1|1246442_1247231_+	Phage transcriptional repressor	NA	A0A1S5SD15	Streptococcus_phage	63.0	2.0e-86
SQE90890.1|1247240_1247546_+	phage membrane protein	NA	NA	NA	NA	NA
SQE90891.1|1247668_1248811_+|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
SQE90892.1|1248900_1249176_-	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
1248899:1248918	attR	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQE90893.1|1249274_1249862_-	membrane protein	NA	NA	NA	NA	NA
SQE90894.1|1249839_1250700_-	GDSL family lipase	NA	NA	NA	NA	NA
SQE90895.1|1250674_1251514_-	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
>prophage 11
LS483320	Streptococcus pyogenes strain NCTC5164 genome assembly, chromosome: 1	1921169	1351543	1394159	1921169	tail,integrase,portal,transposase,terminase	Streptococcus_pyogenes_phage(59.02%)	64	1378896:1378911	1394312:1394327
SQE90986.1|1351543_1352899_-	RNA methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	32.7	4.3e-73
SQE90987.1|1353089_1353272_-	paratox	NA	J7KBZ4	Streptococcus_phage	81.4	1.1e-19
SQE90988.1|1353492_1354248_+	exotoxin type A	NA	A0A097PAT7	Streptococcus_pyogenes_phage	100.0	2.2e-143
SQE90989.1|1354369_1355029_-	phage protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	100.0	8.5e-123
SQE90990.1|1355028_1355250_-	phage protein	NA	A0A097PAX7	Streptococcus_pyogenes_phage	84.5	2.5e-18
SQE90991.1|1355259_1356033_-	phage protein	NA	A0A097PAV0	Streptococcus_pyogenes_phage	100.0	3.9e-135
SQE90992.1|1356043_1356646_-	phage protein	NA	A0A097PAX9	Streptococcus_pyogenes_phage	98.8	7.8e-91
SQE90993.1|1356657_1357422_-	phage-associated cell wall hydrolase	NA	A0A097PAT3	Streptococcus_pyogenes_phage	100.0	1.5e-150
SQE90994.1|1357423_1357756_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A097PBF6	Streptococcus_pyogenes_phage	100.0	5.7e-51
SQE90995.1|1357755_1358079_-	phage protein	NA	A0A097PAX2	Streptococcus_pyogenes_phage	100.0	7.7e-53
SQE90996.1|1358092_1358215_-	phage protein	NA	A0A097PAU6	Streptococcus_pyogenes_phage	97.5	2.4e-15
SQE90997.1|1358228_1358576_-	phage protein	NA	A0A097PAX5	Streptococcus_pyogenes_phage	100.0	3.5e-59
SQE90998.1|1358586_1360449_-	phage structural protein	NA	A0A097PAT0	Streptococcus_pyogenes_phage	99.7	0.0e+00
SQE90999.1|1360453_1363894_-	phage protein	NA	A0A097PBF5	Streptococcus_pyogenes_phage	99.9	0.0e+00
SQE91000.1|1363894_1365379_-|tail	siphovirus tail component family protein	tail	A0A097PAW9	Streptococcus_pyogenes_phage	99.8	4.3e-292
SQE91001.1|1365379_1366789_-	phage, tape measure protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	99.4	2.1e-219
SQE91002.1|1366817_1367186_-	phage protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	92.2	5.4e-18
SQE91003.1|1367178_1367637_-	phage protein	NA	A0A097PAX1	Streptococcus_pyogenes_phage	99.3	8.6e-82
SQE91004.1|1367609_1367927_-	phage protein	NA	A0A097PAS6	Streptococcus_pyogenes_phage	100.0	4.9e-52
SQE91005.1|1367939_1368446_-	antigen A	NA	A0A097PBF4	Streptococcus_pyogenes_phage	100.0	2.6e-79
SQE91006.1|1368457_1368868_-	antigen B	NA	A0A097PAW5	Streptococcus_pyogenes_phage	100.0	1.4e-70
SQE91007.1|1368869_1369253_-	antigen C	NA	A0A097PAT9	Streptococcus_pyogenes_phage	100.0	1.7e-59
SQE91008.1|1369261_1369573_-	phage protein	NA	A0A097PAW7	Streptococcus_pyogenes_phage	99.0	2.6e-50
SQE91009.1|1369569_1369914_-	phage protein	NA	A0A097PAS2	Streptococcus_pyogenes_phage	100.0	1.1e-54
SQE91010.1|1369927_1370221_-	phage protein	NA	A0A097PBF3	Streptococcus_pyogenes_phage	100.0	2.0e-47
SQE91011.1|1370233_1371124_-	phage protein	NA	A0A097PAW2	Streptococcus_pyogenes_phage	99.4	8.6e-86
SQE91012.1|1371141_1371714_-	phage scaffold protein	NA	A0A097PAW3	Streptococcus_pyogenes_phage	100.0	1.2e-72
SQE91013.1|1371863_1372130_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	100.0	2.6e-38
SQE91014.1|1372136_1373045_-	phage protein	NA	A0A097PBF2	Streptococcus_pyogenes_phage	100.0	4.2e-88
SQE91015.1|1373013_1374339_-|portal	portal protein	portal	A0A097PAT2	Streptococcus_pyogenes_phage	100.0	7.4e-243
SQE91016.1|1374338_1375613_-|terminase	terminase large subunit	terminase	A0A097PAV9	Streptococcus_pyogenes_phage	100.0	1.1e-251
SQE91017.1|1375602_1375983_-	phage protein	NA	A0A097PAR5	Streptococcus_pyogenes_phage	100.0	1.0e-64
SQE91018.1|1376592_1377027_-	autolysin regulatory protein	NA	J7KDQ1	Streptococcus_phage	94.4	2.2e-71
SQE91019.1|1377311_1377482_-	phage protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	100.0	2.9e-27
SQE91020.1|1377478_1377982_-	phage protein	NA	A0A097PAV5	Streptococcus_pyogenes_phage	98.2	2.2e-91
SQE91021.1|1378268_1378454_-	phage protein	NA	A0A097PBF0	Streptococcus_pyogenes_phage	100.0	7.0e-27
SQE91022.1|1378619_1378955_-	Uncharacterised protein	NA	A0A097PAS4	Streptococcus_pyogenes_phage	100.0	4.7e-45
1378896:1378911	attL	AAATCCCATTATAAAA	NA	NA	NA	NA
SQE91023.1|1378957_1379242_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	91.5	5.0e-40
SQE91024.1|1379238_1379409_-	phage protein	NA	Q938M0	Temperate_phage	96.8	2.5e-10
SQE91025.1|1379405_1379819_-	phage protein	NA	Q938M1	Temperate_phage	63.1	1.2e-34
SQE91026.1|1379815_1380100_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	97.9	2.7e-49
SQE91027.1|1380093_1380345_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	92.8	3.4e-40
SQE91028.1|1380341_1380698_-	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	95.8	1.8e-58
SQE91029.1|1380681_1381002_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	99.1	5.8e-53
SQE91030.1|1381147_1382011_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE91031.1|1382215_1383697_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	99.4	4.2e-295
SQE91032.1|1383686_1384490_-	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	98.9	4.3e-153
SQE91033.1|1384501_1384960_-	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	99.3	5.0e-82
SQE91034.1|1384974_1386204_-	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	99.5	2.8e-236
SQE91035.1|1386305_1386986_-	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQE91036.1|1386986_1387469_-	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
SQE91037.1|1387616_1387931_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	96.2	7.0e-51
SQE91038.1|1387946_1388084_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	91.1	9.2e-16
SQE91039.1|1388114_1388366_-	phage protein	NA	A0A1P8VVV6	Streptococcus_phage	98.8	1.4e-41
SQE91040.1|1388460_1388679_-	Transcriptional regulator, Cro family	NA	A0A1P8VVR5	Streptococcus_phage	100.0	4.1e-34
SQE91041.1|1388867_1389227_+	Transcriptional regulator, MerR family	NA	A0A1P8VVN3	Streptococcus_phage	98.3	1.8e-58
SQE91042.1|1389210_1389588_+	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	100.0	4.0e-69
SQE91043.1|1389598_1389751_+	phage protein	NA	A0A1P8VVQ0	Streptococcus_phage	100.0	5.2e-20
SQE91044.1|1389921_1390608_+	phage protein	NA	A0A1P8VVT3	Streptococcus_phage	99.1	4.8e-121
SQE91045.1|1390781_1391450_+|integrase	phage integrase	integrase	C5J953	Streptococcus_phage	47.2	8.8e-51
SQE91046.1|1391473_1391866_+|integrase	phage integrase	integrase	A0A1S5SEH2	Streptococcus_phage	48.6	1.9e-13
SQE91047.1|1392013_1392790_+	recX family protein	NA	NA	NA	NA	NA
SQE91048.1|1392869_1393403_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQE91049.1|1393772_1394159_+|transposase	transposase	transposase	A0A1X9I619	Streptococcus_phage	56.7	2.1e-25
1394312:1394327	attR	TTTTATAATGGGATTT	NA	NA	NA	NA
>prophage 12
LS483320	Streptococcus pyogenes strain NCTC5164 genome assembly, chromosome: 1	1921169	1679139	1749987	1921169	bacteriocin,tRNA,protease,transposase	Synechococcus_phage(11.11%)	58	NA	NA
SQE91310.1|1679139_1680483_-|tRNA	cysteinyl-tRNA synthetase	tRNA	A0A1V0SAQ2	Catovirus	30.1	8.5e-53
SQE91311.1|1680510_1680741_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE91312.1|1681219_1681801_-	serine acetyl transferase	NA	NA	NA	NA	NA
SQE91313.1|1681809_1682562_-	polynucleotide phosphorylase/polyadenylase	NA	NA	NA	NA	NA
SQE91314.1|1684966_1685695_-	translaldolase	NA	H8ZNI7	Synechococcus_phage	33.0	8.4e-15
SQE91315.1|1685707_1687087_-	PTS system ascorbate-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQE91316.1|1687113_1687398_-	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
SQE91317.1|1687390_1689451_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQE91318.1|1689802_1690072_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
SQE91319.1|1690247_1690448_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE91320.1|1690956_1691571_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	38.9	1.3e-13
SQE91321.1|1691604_1692147_-	oxidoreductase	NA	NA	NA	NA	NA
SQE91322.1|1692276_1692705_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
SQE91323.1|1692814_1697212_-	DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	40.8	1.7e-17
SQE91324.1|1697465_1699322_-|tRNA	prolyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	24.6	4.1e-05
SQE91325.1|1699519_1700779_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
SQE91326.1|1700851_1701646_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SQE91327.1|1701658_1702408_-	undecaprenyl pyrophosphate synthase	NA	R9W0U9	Flavobacterium_phage	41.7	9.6e-22
SQE91328.1|1702636_1703002_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
SQE91329.1|1703117_1703465_-|bacteriocin	bacteriocin transporter	bacteriocin	NA	NA	NA	NA
SQE91330.1|1703606_1707104_-	pullulanase	NA	NA	NA	NA	NA
SQE91331.1|1707493_1709101_-	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
SQE91332.1|1709229_1710363_-	Multiple sugar-binding transport ATP-binding protein msmK	NA	G3M9Y6	Bacillus_virus	32.9	1.1e-24
SQE91333.1|1710660_1711509_-	leucine rich protein	NA	NA	NA	NA	NA
SQE91334.1|1711868_1713191_+	streptokinase C	NA	NA	NA	NA	NA
SQE91335.1|1713288_1713732_-|tRNA	D-tyrosyl-tRNA deacylase	tRNA	NA	NA	NA	NA
SQE91336.1|1713746_1715966_-	GTP pyrophosphokinase	NA	A0A1S6L1R3	Vibrio_phage	36.9	1.5e-06
SQE91337.1|1716217_1716493_-	collagen-like protein	NA	NA	NA	NA	NA
SQE91338.1|1716643_1717063_-	collagen-like protein	NA	NA	NA	NA	NA
SQE91339.1|1717463_1718597_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE91340.1|1718601_1718736_+	hupothetical protein	NA	NA	NA	NA	NA
SQE91341.1|1718770_1719253_+	nrdI Flavodoxin like family protein	NA	NA	NA	NA	NA
SQE91342.1|1719647_1720466_-	putative RgfB protein	NA	NA	NA	NA	NA
SQE91343.1|1720544_1722731_-	PTS system, glucose-specific II ABC component	NA	A0A2I7SAJ6	Vibrio_phage	43.0	1.9e-06
SQE91344.1|1723092_1723842_-	16S ribosomal RNA methyltransferase	NA	NA	NA	NA	NA
SQE91345.1|1723841_1724795_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
SQE91346.1|1724865_1725336_-	Protein of uncharacterised function (DUF3013)	NA	NA	NA	NA	NA
SQE91347.1|1725391_1725493_-	RhuM	NA	NA	NA	NA	NA
SQE91348.1|1726029_1726893_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE91349.1|1727036_1727378_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE91350.1|1728174_1729932_+	para-aminobenzoate synthetase componentI/4-amino-4-deoxychorismate lyase	NA	A0A0B5J984	Pandoravirus	30.1	1.2e-38
SQE91351.1|1729964_1730531_+	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.4	4.5e-32
SQE91352.1|1730563_1731832_+	Chromosome segregation helicase	NA	A0A127AWE7	Bacillus_phage	46.9	4.5e-96
SQE91353.1|1732330_1732771_+	acetyltransferase	NA	NA	NA	NA	NA
SQE91354.1|1732825_1733296_+	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	42.3	2.1e-27
SQE91355.1|1733580_1734282_+	mitogenic exotoxin Z	NA	A0EX09	Staphylococcus_phage	36.2	7.3e-16
SQE91356.1|1734608_1734833_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQE91357.1|1735011_1736640_+	Glutathione-binding protein gsiB	NA	NA	NA	NA	NA
SQE91358.1|1736752_1737730_+	oligopeptide ABC transporter (permease)	NA	NA	NA	NA	NA
SQE91359.1|1737726_1738548_+	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	NA	NA	NA	NA	NA
SQE91360.1|1738559_1739363_+	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.9	6.5e-08
SQE91361.1|1739346_1739973_+	Dipeptide transport ATP-binding protein dppF	NA	A0A2H4P6Z4	Pseudomonas_phage	26.1	1.0e-05
SQE91362.1|1740055_1740256_-	CsbD-like protein	NA	J7KJ36	Streptococcus_phage	86.4	1.3e-21
SQE91363.1|1740424_1742896_-	histidine triad protein	NA	NA	NA	NA	NA
SQE91364.1|1742908_1743829_-	Laminin-binding surface protein	NA	NA	NA	NA	NA
SQE91365.1|1744006_1745140_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE91366.1|1745390_1748894_-	C5A peptidase	NA	NA	NA	NA	NA
SQE91367.1|1749327_1749987_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	91.3	1.9e-114
>prophage 13
LS483320	Streptococcus pyogenes strain NCTC5164 genome assembly, chromosome: 1	1921169	1845091	1860810	1921169	tRNA	Streptococcus_phage(61.54%)	22	NA	NA
SQE91450.1|1845091_1845883_-	transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	48.5	7.5e-09
SQE91451.1|1845974_1846208_+	transcriptional regulator	NA	NA	NA	NA	NA
SQE91452.1|1846262_1846670_+	phage protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
SQE91453.1|1846683_1847301_+	pRha family phage regulatory protein	NA	A0A159B6D5	Gordonia_phage	38.8	2.2e-11
SQE91454.1|1847534_1847876_+	phage protein	NA	NA	NA	NA	NA
SQE91455.1|1847862_1848084_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE91456.1|1848086_1848278_+	phage protein	NA	NA	NA	NA	NA
SQE91457.1|1848289_1848619_+	phage protein	NA	NA	NA	NA	NA
SQE91458.1|1848621_1848894_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
SQE91459.1|1848894_1849752_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	74.8	4.5e-124
SQE91460.1|1849720_1851409_+	phage/plasmid primase, P4 family, C-terminal domain protein	NA	A0A1X9I717	Streptococcus_phage	82.1	2.5e-259
SQE91461.1|1851695_1851869_+	Uncharacterised protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
SQE91462.1|1851874_1852048_+	phage protein	NA	NA	NA	NA	NA
SQE91463.1|1852049_1852559_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.1e-29
SQE91464.1|1852632_1853121_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
SQE91465.1|1853519_1853882_+	phage protein	NA	A0A2H4JFS1	uncultured_Caudovirales_phage	29.9	1.3e-05
SQE91466.1|1853856_1854240_+	phage protein	NA	Q938L8	Temperate_phage	41.7	3.7e-14
SQE91467.1|1854440_1855103_+	secreted phage protein	NA	NA	NA	NA	NA
SQE91468.1|1855499_1858055_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	23.4	3.0e-43
SQE91469.1|1858041_1858248_-	cytoplasmic protein	NA	NA	NA	NA	NA
SQE91470.1|1858390_1858828_-	arginine repressor	NA	NA	NA	NA	NA
SQE91471.1|1859118_1860810_+|tRNA	arginyl-tRNA synthetase	tRNA	A0A2I2L3K1	Orpheovirus	32.2	7.1e-73
