assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900474815.1_41800_F01	LS483323	Streptococcus pyogenes strain NCTC8300 genome assembly, chromosome: 1	1	572031-572530	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type I-C,Type I-U, Type I-U?	GTCTCACCCTTCATGGGTGAGTGGATTGAAAT,GTCTCACCCTTCATGGGTGAGTGGATTGAAA,GTCTCACCCTTCATGGGTGAGTGGATTGAAATA	32,31,33	2	2	572465-572497|572466-572497	LS483323.1_8228-8260|LS483323.1_8229-8260	I-C:I-C:I-C	7,7,7	7	TypeI-C,TypeI-U,TypeI-U?	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA,NA	NA|132aa|up_9|LS483323.1_559499_559895_+	PRK07758, PRK07758, hypothetical protein; Provisional	NA|188aa|up_8|LS483323.1_560495_561059_+	pfam13238, AAA_18, AAA domain	NA|883aa|up_7|LS483323.1_561060_563709_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|803aa|up_6|LS483323.1_563862_566271_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|LS483323.1_566403_567132_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|LS483323.1_567131_569027_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7|283aa|up_3|LS483323.1_569031_569880_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|LS483323.1_569881_570556_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|LS483323.1_570552_571578_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|LS483323.1_571588_571882_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|LS483323.1_572688_573399_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|LS483323.1_573411_574035_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|LS483323.1_574077_575184_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|LS483323.1_575271_576012_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_4|LS483323.1_576008_577742_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_5|LS483323.1_577814_578894_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_6|LS483323.1_578916_579633_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_7|LS483323.1_579798_580272_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_8|LS483323.1_580413_581094_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|412aa|down_9|LS483323.1_581367_582603_+	PRK01388, PRK01388, arginine deiminase; Provisional
GCA_900474815.1_41800_F01	LS483323	Streptococcus pyogenes strain NCTC8300 genome assembly, chromosome: 1	2	760996-761096	2	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Orphan	TATAATTAGACTATACCAATTTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|262aa|up_6|LS483323.1_752379_753165_-,NA	NA|755aa|up_9|LS483323.1_747750_750015_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|207aa|up_8|LS483323.1_750271_750892_-	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|205aa|up_7|LS483323.1_751632_752247_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_6|LS483323.1_752379_753165_-	NA	NA|233aa|up_5|LS483323.1_753174_753873_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|124aa|up_4|LS483323.1_753872_754244_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|1037aa|up_3|LS483323.1_754428_757539_+	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|338aa|up_2|LS483323.1_757618_758632_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|501aa|up_1|LS483323.1_758694_760197_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|186aa|up_0|LS483323.1_760414_760972_+	TIGR02227, Inactive_signal_peptidase_IA	NA|605aa|down_0|LS483323.1_761147_762962_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|112aa|down_1|LS483323.1_763143_763479_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|214aa|down_2|LS483323.1_763585_764227_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|210aa|down_3|LS483323.1_764236_764866_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|279aa|down_4|LS483323.1_764881_765718_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|258aa|down_5|LS483323.1_766086_766860_+	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|412aa|down_6|LS483323.1_767229_768465_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|441aa|down_7|LS483323.1_768584_769907_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|773aa|down_8|LS483323.1_770435_772754_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|83aa|down_9|LS483323.1_773117_773366_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCA_900474815.1_41800_F01	LS483323	Streptococcus pyogenes strain NCTC8300 genome assembly, chromosome: 1	3	947990-948224	2,3,2	CRT,CRISPRCasFinder,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type II-A,Type II-C,Type II-B	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC	36,29,36	1	2	948026-948055|948026-948055	LS483323.1_996343-996372|LS483323.1_1404348-1404377	II-A:II-A:II-A	3,3,2	3	TypeII-A,TypeII-C,TypeII-B	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|35aa|up_2|LS483323.1_946079_946184_-,NA|214aa|down_8|LS483323.1_958087_958729_-	NA|270aa|up_9|LS483323.1_939014_939824_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_8|LS483323.1_939840_940332_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_7|LS483323.1_940350_940776_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_6|LS483323.1_940982_942002_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_5|LS483323.1_942131_942569_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|387aa|up_4|LS483323.1_942754_943915_-	PHA03169, PHA03169, hypothetical protein; Provisional	NA|611aa|up_3|LS483323.1_944187_946020_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|35aa|up_2|LS483323.1_946079_946184_-	NA	NA|378aa|up_1|LS483323.1_946188_947322_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	NA|66aa|up_0|LS483323.1_947679_947877_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	csn2|221aa|down_0|LS483323.1_948326_948989_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|104aa|down_1|LS483323.1_948978_949290_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|LS483323.1_949316_950186_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|LS483323.1_950185_954292_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|LS483323.1_954736_955369_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|LS483323.1_955368_956133_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|LS483323.1_956132_956885_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|399aa|down_7|LS483323.1_956894_958091_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|LS483323.1_958087_958729_-	NA	NA|452aa|down_9|LS483323.1_958852_960208_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
