The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483323	Streptococcus pyogenes strain NCTC8300 genome assembly, chromosome: 1	1797476	36269	48630	1797476		Synechococcus_phage(28.57%)	8	NA	NA
SQF01208.1|36269_40043_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.3	1.1e-38
SQF01209.1|40203_41658_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.5	8.3e-54
SQF01210.1|41685_42708_+	phosphoribosylaminoimidazole synthetase	NA	R9TMC7	Synechococcus_phage	41.8	4.0e-63
SQF01211.1|42875_43430_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
SQF01212.1|43613_45161_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
SQF01213.1|45218_46343_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQF01214.1|46595_47861_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQF01215.1|48138_48630_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
LS483323	Streptococcus pyogenes strain NCTC8300 genome assembly, chromosome: 1	1797476	659951	716364	1797476	protease,integrase,transposase,tRNA	Enterococcus_phage(20.0%)	53	655387:655403	705512:705528
655387:655403	attL	TTCTAGTGCAGCTTTTT	NA	NA	NA	NA
SQF01781.1|659951_660980_-|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQF01782.1|661181_661886_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQF01783.1|662004_662721_+	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQF01784.1|663015_663978_+	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQF01785.1|663990_665796_+	oligoendopeptidase F	NA	NA	NA	NA	NA
SQF01786.1|666171_667368_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF01787.1|667469_668141_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	2.4e-08
SQF01788.1|668203_669259_+	foldase protein prsA 1	NA	NA	NA	NA	NA
SQF01789.1|669645_672264_+|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	33.9	1.1e-61
SQF01790.1|672623_672839_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQF01791.1|672835_673597_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF01792.1|673615_674311_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF01793.1|674404_674626_-|transposase	transposase	transposase	U5P429	Shigella_phage	44.3	2.5e-10
SQF01794.1|674665_675235_-|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	39.0	2.6e-27
SQF01795.1|675267_675561_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF01796.1|675656_676970_-	chloride channel protein	NA	NA	NA	NA	NA
SQF01797.1|676944_677904_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.5	3.7e-127
SQF01798.1|677938_678208_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF01799.1|678225_680385_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.4	2.3e-262
SQF01800.1|680404_680623_-	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
SQF01801.1|681015_681279_+	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQF01802.1|681283_683017_+	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQF01803.1|683201_684629_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQF01804.1|684723_685998_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQF01805.1|686108_687194_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.6e-33
SQF01806.1|687291_687918_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	2.2e-35
SQF01807.1|687997_688261_+	membrane protein	NA	NA	NA	NA	NA
SQF01808.1|688313_689123_-	membrane protein	NA	NA	NA	NA	NA
SQF01809.1|689267_689765_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQF01810.1|689764_691450_+	DNA polymerase III subunits gamma and tau	NA	E7DN81	Pneumococcus_phage	40.6	6.7e-47
SQF01811.1|691719_692853_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF01812.1|693172_694114_-	biotin-protein ligase	NA	NA	NA	NA	NA
SQF01813.1|694317_696696_+	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
SQF01814.1|697231_698428_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	4.5e-138
SQF01815.1|698601_699861_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF01816.1|700218_700788_+	Protein G-related alpha 2 macroglobulin-binding protein GraB	NA	NA	NA	NA	NA
SQF01817.1|701025_701568_+	acetyltransferase family protein	NA	NA	NA	NA	NA
SQF01818.1|701576_702860_+	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQF01819.1|702875_703736_+	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQF01820.1|703737_704703_+	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQF01821.1|704813_706097_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
705512:705528	attR	TTCTAGTGCAGCTTTTT	NA	NA	NA	NA
SQF01822.1|706089_706581_+	shikimate kinase	NA	NA	NA	NA	NA
SQF01823.1|706788_708240_+	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQF01824.1|708321_709677_+|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	D0R096	Streptococcus_phage	98.4	2.1e-253
SQF01825.1|709715_709808_+	phosphorylase Pnp/Udp family protein	NA	NA	NA	NA	NA
SQF01826.1|710031_710199_+	phosphorylase Pnp/Udp family protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	94.4	2.8e-22
SQF01827.1|710270_710510_+	phosphorylase Pnp/Udp family protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	96.2	4.4e-37
SQF01828.1|710594_710996_+	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQF01829.1|711100_712585_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF01830.1|712958_714179_+	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQF01831.1|714298_714664_-	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQF01832.1|714777_715509_+	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQF01833.1|715557_716364_-|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	49.6	4.1e-63
>prophage 3
LS483323	Streptococcus pyogenes strain NCTC8300 genome assembly, chromosome: 1	1797476	946188	1031228	1797476	tail,protease,integrase,portal,terminase,transposase,head	Streptococcus_phage(38.18%)	92	987996:988044	1028456:1028504
SQF02058.1|946188_947322_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF02059.1|947679_947877_-	nucleoside diphosphate kinase protein Ndk	NA	NA	NA	NA	NA
SQF02060.1|948326_948989_-	CRISPR-associated family protein	NA	NA	NA	NA	NA
SQF02061.1|948978_949290_-	CRISPR-associated Cas2 family protein	NA	NA	NA	NA	NA
SQF02062.1|949316_950186_-	cytoplasmic protein	NA	NA	NA	NA	NA
SQF02063.1|950185_954292_-	CRISPR-associated protein, Csn1 family	NA	NA	NA	NA	NA
SQF02064.1|954736_955369_-	membrane protein	NA	NA	NA	NA	NA
SQF02065.1|955368_956133_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
SQF02066.1|956132_956885_-	oleoyl-[acyl-carrier-protein] hydrolase	NA	NA	NA	NA	NA
SQF02067.1|956894_958091_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
SQF02068.1|958087_958729_-	acetyltransferase GNAT Family	NA	NA	NA	NA	NA
SQF02069.1|958852_960208_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
SQF02070.1|960261_961218_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF02071.1|961214_962066_-	disA bacterial checkpoint controller nucleotide-binding family protein	NA	NA	NA	NA	NA
SQF02072.1|962178_963516_+	UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
SQF02073.1|963515_964307_+	cobyric acid synthase	NA	NA	NA	NA	NA
SQF02074.1|964415_965405_-	lipoate-protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	23.9	4.1e-12
SQF02075.1|965637_968055_+	Hyaluronate lyase precursor	NA	NA	NA	NA	NA
SQF02076.1|968728_970492_-	dihydrolipoamide dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.5	1.2e-33
SQF02077.1|970818_972228_-	branched-chain alpha-keto acid dehydrogenase E2 subunit	NA	NA	NA	NA	NA
SQF02078.1|972412_973414_-	TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit	NA	NA	NA	NA	NA
SQF02079.1|973469_974438_-	Pyruvate dehydrogenase E1 component alpha subunit	NA	NA	NA	NA	NA
SQF02080.1|974724_976632_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.9	3.4e-55
SQF02081.1|976677_977004_-|protease	protease	protease	NA	NA	NA	NA
SQF02082.1|977033_977819_-	acetyl esterase	NA	NA	NA	NA	NA
SQF02083.1|977951_979613_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
SQF02084.1|979816_980575_-	spermidine/putrescine import ATP-binding protein potA	NA	A0A1V0SE00	Indivirus	28.3	5.9e-11
SQF02085.1|980571_981441_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SQF02086.1|981785_982784_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQF02087.1|983137_984790_+	fibronectin-binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	41.0	1.7e-07
SQF02088.1|984848_986096_-	Tetratricopeptide repeat family protein	NA	NA	NA	NA	NA
SQF02089.1|986085_987267_-	permease	NA	NA	NA	NA	NA
SQF02090.1|987324_987801_-	7,8-dihydro-8-oxoguanine-triphosphatase	NA	NA	NA	NA	NA
987996:988044	attL	TTGATATGACAAGGTTCTTTAATGTTTTATTTAATCACTTCTTGAGTTT	NA	NA	NA	NA
SQF02091.1|988383_989247_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF02092.1|989373_990084_-	exotoxin H precursor	NA	NA	NA	NA	NA
SQF02093.1|990109_990889_-	exotoxin I precursor	NA	A0A075M4C7	Staphylococcus_phage	32.7	9.3e-28
SQF02094.1|991060_992182_-	Phage lysin, N-acetylmuramoyl-L-alanine amidase	NA	J7KIY0	Streptococcus_phage	93.0	2.4e-202
SQF02095.1|992435_992621_-	phage protein	NA	Q938J5	Temperate_phage	95.1	1.9e-24
SQF02096.1|992617_992914_-	phage protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
SQF02097.1|992924_993536_-	phage protein	NA	Q938J7	Temperate_phage	91.1	5.7e-81
SQF02098.1|993538_993700_-	phage protein	NA	NA	NA	NA	NA
SQF02099.1|993713_995627_-	phage infection protein	NA	Q938J9	Temperate_phage	61.3	2.7e-92
SQF02100.1|995639_996761_-	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	73.3	1.9e-127
SQF02101.1|996757_998809_-	phage protein	NA	A3F656	Streptococcus_phage	83.8	0.0e+00
SQF02102.1|998805_999585_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	55.6	9.2e-68
SQF02103.1|999617_1003253_-	tape measure domain protein	NA	U6E979	Streptococcus_phage	28.0	4.0e-04
SQF02104.1|1003267_1003597_-	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	40.6	5.7e-11
SQF02105.1|1003638_1003992_-	phage protein	NA	Q77RZ7	Lactococcus_phage	48.6	5.5e-20
SQF02106.1|1004051_1004705_-|tail	major tail protein	tail	D7RWD5	Brochothrix_phage	53.3	6.6e-43
SQF02107.1|1004714_1005104_-	phage protein	NA	Q38611	Lactococcus_phage	69.0	1.6e-44
SQF02108.1|1005100_1005457_-	phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	5.7e-17
SQF02109.1|1005446_1005755_-	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
SQF02110.1|1005751_1006105_-	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	7.4e-25
SQF02111.1|1006116_1006383_-	phage protein	NA	NA	NA	NA	NA
SQF02112.1|1006394_1007444_-|head	phage head protein	head	B0YL60	Streptococcus_virus	56.9	2.6e-105
SQF02113.1|1007446_1007827_-	structural protein	NA	A0A0K2CNR0	Brevibacillus_phage	36.3	6.4e-06
SQF02114.1|1007836_1008370_-	phage protein	NA	A0A141E0S7	Streptococcus_phage	82.5	1.8e-14
SQF02115.1|1008513_1008780_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	72.7	1.7e-26
SQF02116.1|1009165_1009351_-	phage protein	NA	NA	NA	NA	NA
SQF02117.1|1009354_1010917_-	phage protein	NA	U6E9F1	Streptococcus_phage	44.2	1.6e-47
SQF02118.1|1010897_1012400_-|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.5	1.6e-140
SQF02119.1|1012411_1013701_-|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	74.9	1.5e-184
SQF02120.1|1013678_1014161_-|terminase	phage terminase small subunit	terminase	E0Y3R8	Staphylococcus_virus	40.3	3.3e-15
SQF02121.1|1014188_1014650_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF02122.1|1014668_1015583_-	phage protein	NA	NA	NA	NA	NA
SQF02123.1|1015897_1016338_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	98.6	4.2e-78
SQF02124.1|1016620_1016791_-	phage protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	98.2	8.4e-27
SQF02125.1|1016787_1017249_-	phage protein	NA	A0A097PAV5	Streptococcus_pyogenes_phage	60.1	4.5e-46
SQF02126.1|1017300_1017546_-	phage protein	NA	A0A1P8VVL2	Streptococcus_phage	92.5	4.5e-21
SQF02127.1|1017542_1017752_-	phage protein	NA	A3F626	Streptococcus_phage	86.5	1.0e-10
SQF02128.1|1017723_1018236_-	phage protein	NA	Q708P9	Streptococcus_phage	73.2	2.9e-62
SQF02129.1|1018232_1018571_-	phage protein	NA	M1PKX3	Streptococcus_phage	37.5	4.0e-12
SQF02130.1|1018766_1019795_-	phage protein	NA	E8ZD61	Streptococcus_phage	65.6	7.2e-121
SQF02131.1|1019804_1020596_-	phage protein RecT family	NA	A0A1S5SFP4	Streptococcus_phage	82.0	1.4e-119
SQF02132.1|1020598_1020928_-	phage protein	NA	J7KGX3	Streptococcus_phage	83.5	2.1e-45
SQF02133.1|1020983_1021190_-	phage protein	NA	NA	NA	NA	NA
SQF02134.1|1021198_1021339_-	phage protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
SQF02135.1|1021335_1021569_-	phage protein	NA	Q938N1	Temperate_phage	94.8	1.8e-35
SQF02136.1|1021549_1021936_-	phage DNA replication protein	NA	Q938N2	Temperate_phage	47.3	1.1e-24
SQF02137.1|1022418_1022604_-	phage protein	NA	Q938N3	Temperate_phage	90.2	1.2e-21
SQF02138.1|1022605_1022917_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.4	4.1e-43
SQF02139.1|1023059_1023296_+	phage protein	NA	NA	NA	NA	NA
SQF02140.1|1023437_1024244_+	protein Ymh	NA	A0A1S5SBU1	Streptococcus_phage	81.7	2.3e-122
SQF02141.1|1024178_1024445_-	phage protein	NA	A0A1S5SC19	Streptococcus_phage	66.3	1.1e-23
SQF02142.1|1024476_1025202_-	phage antirepressor protein	NA	A0A141E1D3	Streptococcus_phage	72.4	1.8e-94
SQF02143.1|1025252_1025480_-	phage protein	NA	A0A141E1R7	Streptococcus_phage	60.0	4.5e-15
SQF02144.1|1025639_1026395_+	phage transcriptional repressor	NA	A0A097PBE5	Streptococcus_pyogenes_phage	64.5	2.2e-82
SQF02145.1|1026432_1027113_+	Uncharacterised protein	NA	A0A097PAS7	Streptococcus_pyogenes_phage	88.3	4.7e-76
SQF02146.1|1027248_1028388_+|integrase	phage integrase	integrase	A1EAB7	Streptococcus_phage	56.3	3.4e-119
SQF02147.1|1028481_1029522_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.5e-68
1028456:1028504	attR	TTGATATGACAAGGTTCTTTAATGTTTTATTTAATCACTTCTTGAGTTT	NA	NA	NA	NA
SQF02148.1|1029765_1030359_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
SQF02149.1|1030358_1031228_-	glucose-1-phosphate thymidyl transferase	NA	K7QKA7	Escherichia_phage	64.2	2.7e-100
>prophage 4
LS483323	Streptococcus pyogenes strain NCTC8300 genome assembly, chromosome: 1	1797476	1041902	1097049	1797476	protease,head,transposase,tRNA	Bacillus_virus(23.08%)	52	NA	NA
SQF02161.1|1041902_1042802_-|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQF02162.1|1042935_1043112_+	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQF02163.1|1043229_1044138_-	exfoliative toxin	NA	NA	NA	NA	NA
SQF02164.1|1044196_1044499_-	glutathione S-transferase	NA	NA	NA	NA	NA
SQF02165.1|1044893_1045880_-	Rhodanese domain protein UPF0176, Firmicutes subgroup	NA	NA	NA	NA	NA
SQF02166.1|1046079_1046382_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF02167.1|1046928_1048134_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQF02168.1|1048524_1048755_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF02169.1|1048818_1049841_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF02170.1|1049963_1052387_-	topoisomerase IV subunit	NA	G3M9Z5	Bacillus_virus	33.2	2.7e-97
SQF02171.1|1052513_1054463_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.0	4.3e-122
SQF02172.1|1054597_1055239_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF02173.1|1055296_1056565_-	dihydroorotase	NA	NA	NA	NA	NA
SQF02174.1|1056696_1057350_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	40.1	2.3e-40
SQF02175.1|1057482_1058133_-	amino-acid ABC transporter permease yckA	NA	NA	NA	NA	NA
SQF02176.1|1058161_1059025_-	cystine-binding protein	NA	NA	NA	NA	NA
SQF02177.1|1059142_1060597_-	amidase	NA	NA	NA	NA	NA
SQF02178.1|1060793_1061423_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQF02179.1|1061480_1062173_-	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQF02180.1|1062449_1062986_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF02181.1|1063207_1064113_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQF02182.1|1064192_1064981_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
SQF02183.1|1064973_1065687_-	Purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQF02184.1|1066349_1067159_-	purine nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	42.2	8.7e-53
SQF02185.1|1067142_1067583_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	55.3	5.8e-35
SQF02186.1|1067601_1068813_-	phosphopentomutase	NA	NA	NA	NA	NA
SQF02187.1|1068889_1069573_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQF02188.1|1069950_1072050_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.4	2.3e-121
SQF02189.1|1072107_1072851_-	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQF02190.1|1072998_1073598_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQF02191.1|1073607_1074837_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	2.3e-137
SQF02192.1|1074966_1075137_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF02193.1|1075156_1075654_-	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQF02194.1|1075733_1076573_-	thymidylate synthase	NA	U5J9N5	Bacillus_phage	52.9	4.9e-83
SQF02195.1|1076781_1077957_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF02196.1|1077943_1079221_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF02197.1|1079392_1080256_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF02198.1|1080418_1081408_-	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF02199.1|1081394_1082408_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF02200.1|1082400_1083345_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF02201.1|1083326_1084205_-	mevalonate kinase	NA	NA	NA	NA	NA
SQF02202.1|1084508_1085741_-	two component system histidine kinase	NA	NA	NA	NA	NA
SQF02203.1|1085749_1086418_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	1.8e-19
SQF02204.1|1086420_1087071_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF02205.1|1087290_1089303_+	5'-nucleotidase	NA	NA	NA	NA	NA
SQF02206.1|1089384_1089795_-	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF02207.1|1090684_1092562_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.7	3.9e-64
SQF02208.1|1092558_1093767_-|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	5.3e-38
SQF02209.1|1093891_1094740_-	degV family protein	NA	NA	NA	NA	NA
SQF02210.1|1094739_1095120_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF02211.1|1095347_1095524_-	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF02212.1|1096023_1097049_+|protease	igG-degrading protease	protease	NA	NA	NA	NA
>prophage 5
LS483323	Streptococcus pyogenes strain NCTC8300 genome assembly, chromosome: 1	1797476	1134229	1144832	1797476		Streptococcus_phage(57.14%)	9	NA	NA
SQF02247.1|1134229_1135372_-	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.5	7.7e-23
SQF02248.1|1135606_1136047_+	membrane protein	NA	NA	NA	NA	NA
SQF02249.1|1136076_1137345_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF02250.1|1137432_1138785_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.0	4.5e-30
SQF02251.1|1139005_1139347_-	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	42.0	6.9e-20
SQF02252.1|1139407_1140574_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF02253.1|1140667_1141354_-	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF02254.1|1141350_1142514_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQF02255.1|1142621_1144832_+	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.8	2.5e-267
>prophage 6
LS483323	Streptococcus pyogenes strain NCTC8300 genome assembly, chromosome: 1	1797476	1367263	1437415	1797476	tail,portal,terminase,transposase,protease	Streptococcus_phage(71.43%)	84	NA	NA
SQF02457.1|1367263_1367770_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF02458.1|1367997_1368252_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF02459.1|1368557_1369034_-	phosphohydrolase	NA	NA	NA	NA	NA
SQF02460.1|1369053_1369950_-	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF02461.1|1370069_1370477_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF02462.1|1370457_1370955_-|protease	metalloprotease	protease	NA	NA	NA	NA
SQF02463.1|1371113_1371689_-	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQF02464.1|1371734_1372787_-	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQF02465.1|1372945_1374718_-	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQF02466.1|1375032_1376202_-	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.5e-16
SQF02467.1|1376357_1376573_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF02468.1|1376569_1377079_-	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQF02469.1|1377151_1378009_-	s1 RNA binding domain	NA	NA	NA	NA	NA
SQF02470.1|1378117_1378675_-	ribosome recycling factor	NA	NA	NA	NA	NA
SQF02471.1|1378703_1379432_-	uridylate kinase	NA	NA	NA	NA	NA
SQF02472.1|1379753_1380443_-	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQF02473.1|1380548_1380974_-	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQF02474.1|1381217_1381571_+	integral membrane protein	NA	NA	NA	NA	NA
SQF02475.1|1381640_1384046_-	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.4	2.2e-88
SQF02476.1|1384262_1385069_+	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
SQF02477.1|1385216_1386071_-	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQF02478.1|1386071_1386797_-	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.4e-17
SQF02479.1|1386860_1387793_-	manganese-binding protein	NA	NA	NA	NA	NA
SQF02480.1|1387938_1388586_+	metalloregulator ScaR	NA	NA	NA	NA	NA
SQF02481.1|1389013_1389709_-	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQF02482.1|1389728_1389980_-	membrane protein	NA	NA	NA	NA	NA
SQF02483.1|1389979_1390534_-	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQF02484.1|1390567_1391950_-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.4	3.8e-32
SQF02485.1|1392123_1393461_-	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQF02486.1|1393793_1394753_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQF02487.1|1394828_1395527_-	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.2	1.6e-10
SQF02488.1|1395519_1395756_-	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQF02489.1|1396415_1396598_-	phage protein	NA	A3F673	Streptococcus_phage	83.3	1.5e-21
SQF02490.1|1396836_1397817_+	Sdn	NA	A7J2B8	Streptococcus_phage	100.0	3.4e-168
SQF02491.1|1397930_1398446_-	phage protein	NA	NA	NA	NA	NA
SQF02492.1|1398767_1399964_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	A7J2B5	Streptococcus_phage	81.5	1.2e-194
SQF02493.1|1399960_1400071_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	91.7	3.9e-09
SQF02494.1|1400074_1400260_-	phage protein	NA	Q938J5	Temperate_phage	93.4	9.5e-24
SQF02495.1|1400256_1400553_-	phage protein	NA	Q938J6	Temperate_phage	98.0	6.4e-46
SQF02496.1|1400562_1401174_-	phage protein	NA	Q938J7	Temperate_phage	88.2	1.2e-78
SQF02497.1|1401170_1401608_-	phage protein	NA	Q938J8	Temperate_phage	89.5	1.3e-63
SQF02498.1|1401619_1403638_-	Phage infection protein	NA	Q938J9	Temperate_phage	72.5	3.3e-178
SQF02499.1|1403647_1404766_-	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	73.6	1.6e-126
SQF02500.1|1404762_1406742_-	phage protein	NA	A7J2A7	Streptococcus_phage	93.8	0.0e+00
SQF02501.1|1406751_1407594_-	phage protein	NA	A7J2A6	Streptococcus_phage	97.9	8.8e-157
SQF02502.1|1407605_1411988_-|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	76.0	1.5e-223
SQF02503.1|1412002_1412236_-	phage protein	NA	A7J2A4	Streptococcus_phage	97.4	6.4e-33
SQF02504.1|1412310_1412766_-	phage protein	NA	A7J2A3	Streptococcus_phage	98.0	4.5e-75
SQF02505.1|1412819_1413419_-|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
SQF02506.1|1413430_1413790_-	phage protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
SQF02507.1|1413793_1414138_-	phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
SQF02508.1|1414134_1414413_-	phage protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
SQF02509.1|1414423_1414780_-	phage protein	NA	A7J298	Streptococcus_phage	100.0	4.6e-59
SQF02510.1|1414791_1415679_-	phage protein	NA	A7J297	Streptococcus_phage	100.0	2.1e-161
SQF02511.1|1415691_1416261_-	phage protein	NA	A7J296	Streptococcus_phage	99.5	7.4e-83
SQF02512.1|1416428_1416695_-	putative phage associated protein	NA	Q938K9	Temperate_phage	95.5	1.1e-36
SQF02513.1|1416699_1416816_-	phage membrane protein	NA	A7J294	Streptococcus_phage	100.0	2.0e-08
SQF02514.1|1416915_1418364_-	phage protein	NA	A7J293	Streptococcus_phage	99.6	1.3e-277
SQF02515.1|1418323_1419856_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.6	9.9e-292
SQF02516.1|1419871_1421149_-|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	100.0	1.1e-246
SQF02517.1|1421138_1421591_-|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
SQF02518.1|1421680_1422097_-	phage protein	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
SQF02519.1|1422229_1422502_-	phage membrane protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
SQF02520.1|1422494_1422665_-	phage protein	NA	A7J285	Streptococcus_phage	94.2	3.1e-21
SQF02521.1|1422665_1423988_-	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.3	7.3e-251
SQF02522.1|1423984_1424260_-	phage protein	NA	A7J283	Streptococcus_phage	96.7	2.9e-45
SQF02523.1|1424625_1427010_-	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	98.0	5.7e-286
SQF02524.1|1427014_1428937_-	phage DNA polymerase	NA	A7J280	Streptococcus_phage	98.3	0.0e+00
SQF02525.1|1428979_1429543_-	phage protein	NA	D2J040	Enterococcus_phage	57.9	5.6e-51
SQF02526.1|1429556_1430714_-	phage protein	NA	A7J278	Streptococcus_phage	99.2	8.5e-219
SQF02527.1|1430713_1431013_-	phage protein	NA	A7J277	Streptococcus_phage	99.0	2.3e-43
SQF02528.1|1431100_1431304_-	phage protein	NA	A7J276	Streptococcus_phage	94.0	1.2e-30
SQF02529.1|1431300_1431453_-	phage protein	NA	A7J275	Streptococcus_phage	88.0	2.3e-15
SQF02530.1|1431449_1431833_-	phage protein	NA	A7J274	Streptococcus_phage	93.7	5.9e-60
SQF02531.1|1431829_1432036_-	phage protein	NA	NA	NA	NA	NA
SQF02532.1|1432028_1432199_-	phage protein	NA	A7J273	Streptococcus_phage	92.9	9.0e-21
SQF02533.1|1432227_1432485_-	phage protein	NA	NA	NA	NA	NA
SQF02534.1|1432572_1432773_-	phage protein	NA	A7J271	Streptococcus_phage	93.8	7.6e-27
SQF02535.1|1432823_1433015_-	phage protein	NA	A7J270	Streptococcus_phage	100.0	7.3e-27
SQF02536.1|1433653_1434004_+	repressor - phage associated	NA	M1I9X0	Streptococcus_phage	85.3	1.2e-48
SQF02537.1|1434017_1434401_+	phage protein	NA	A7J268	Streptococcus_phage	99.2	1.5e-68
SQF02538.1|1434411_1434963_+	phage protein	NA	A7J267	Streptococcus_phage	94.0	1.5e-88
SQF02539.1|1435138_1436227_+	DNA integration/recombination/invertion protein	NA	Q938N9	Temperate_phage	72.6	6.4e-152
SQF02540.1|1436446_1437415_+	Protein of uncharacterised function (DUF3644)	NA	A0A0N9RUA4	Staphylococcus_phage	52.3	1.2e-88
>prophage 7
LS483323	Streptococcus pyogenes strain NCTC8300 genome assembly, chromosome: 1	1797476	1457322	1463357	1797476		Streptococcus_phage(100.0%)	8	NA	NA
SQF02554.1|1457322_1458150_+	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.5	2.9e-128
SQF02555.1|1458223_1458580_-	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.1e-39
SQF02556.1|1458878_1459508_+	copper homeostasis protein	NA	NA	NA	NA	NA
SQF02557.1|1459554_1459947_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF02558.1|1459973_1460837_-	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	1.5e-114
SQF02559.1|1460841_1461165_-	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF02560.1|1461828_1462704_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	43.8	1.0e-62
SQF02561.1|1462721_1463357_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
>prophage 8
LS483323	Streptococcus pyogenes strain NCTC8300 genome assembly, chromosome: 1	1797476	1565708	1636311	1797476	protease,transposase,tRNA,bacteriocin	Streptococcus_phage(15.79%)	56	NA	NA
SQF02661.1|1565708_1567052_-|tRNA	cysteinyl-tRNA synthetase	tRNA	A0A1V0SAQ2	Catovirus	29.9	2.5e-52
SQF02662.1|1567079_1567310_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF02663.1|1567788_1568370_-	serine acetyl transferase	NA	NA	NA	NA	NA
SQF02664.1|1568378_1569131_-	polynucleotide phosphorylase/polyadenylase	NA	NA	NA	NA	NA
SQF02665.1|1569123_1571256_-	polynucleotide phosphorylase/polyadenylase	NA	NA	NA	NA	NA
SQF02666.1|1571536_1572265_-	translaldolase	NA	H8ZNI7	Synechococcus_phage	33.0	8.4e-15
SQF02667.1|1572277_1573657_-	PTS system ascorbate-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQF02668.1|1573683_1573968_-	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
SQF02669.1|1573960_1576021_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQF02670.1|1576372_1576642_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
SQF02671.1|1576817_1577018_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF02672.1|1577527_1578142_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	38.9	1.3e-13
SQF02673.1|1578174_1578717_-	oxidoreductase	NA	NA	NA	NA	NA
SQF02674.1|1578848_1579277_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
SQF02675.1|1579386_1583784_-	DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	40.8	1.7e-17
SQF02676.1|1584037_1585894_-|tRNA	prolyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	24.6	4.1e-05
SQF02677.1|1586091_1587351_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
SQF02678.1|1587423_1588218_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SQF02679.1|1588230_1588980_-	undecaprenyl pyrophosphate synthase	NA	R9W0U9	Flavobacterium_phage	41.7	7.3e-22
SQF02680.1|1589198_1589564_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
SQF02681.1|1589679_1590027_-|bacteriocin	bacteriocin transporter	bacteriocin	NA	NA	NA	NA
SQF02682.1|1590168_1593666_-	pullulanase	NA	NA	NA	NA	NA
SQF02683.1|1593863_1595477_-	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
SQF02684.1|1595605_1596739_-	Multiple sugar-binding transport ATP-binding protein msmK	NA	G3M9Y6	Bacillus_virus	32.9	1.1e-24
SQF02685.1|1597036_1597885_-	leucine rich protein	NA	NA	NA	NA	NA
SQF02686.1|1598225_1599548_+	streptokinase	NA	NA	NA	NA	NA
SQF02687.1|1599645_1600089_-|tRNA	D-tyrosyl-tRNA deacylase	tRNA	NA	NA	NA	NA
SQF02688.1|1600103_1602323_-	GTP pyrophosphokinase	NA	A0A1S6L1R3	Vibrio_phage	39.5	8.9e-07
SQF02689.1|1602574_1603951_-	collagen-like surface protein	NA	NA	NA	NA	NA
SQF02690.1|1604332_1604794_+	nrdI Flavodoxin like family protein	NA	NA	NA	NA	NA
SQF02691.1|1605188_1606007_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
SQF02692.1|1606089_1608276_-	PTS system, glucose-specific II ABC component	NA	A0A2I7SAJ6	Vibrio_phage	43.0	1.5e-06
SQF02693.1|1608632_1609382_-	16S ribosomal RNA methyltransferase	NA	NA	NA	NA	NA
SQF02694.1|1609381_1610335_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
SQF02695.1|1610405_1610876_-	Protein of uncharacterised function (DUF3013)	NA	NA	NA	NA	NA
SQF02696.1|1611569_1612433_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF02697.1|1612576_1612918_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF02698.1|1613714_1615472_+	para-aminobenzoate synthetase componentI/4-amino-4-deoxychorismate lyase	NA	A0A0B5J984	Pandoravirus	30.7	8.2e-40
SQF02699.1|1615504_1616071_+	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.4	4.5e-32
SQF02700.1|1616103_1617372_+	Chromosome segregation helicase	NA	A0A127AWE7	Bacillus_phage	46.9	4.5e-96
SQF02701.1|1617870_1618311_+	acetyltransferase	NA	NA	NA	NA	NA
SQF02702.1|1618365_1618836_+	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	42.3	2.1e-27
SQF02703.1|1619120_1619822_+	mitogenic exotoxin Z	NA	A0EX09	Staphylococcus_phage	36.2	7.3e-16
SQF02704.1|1620148_1620373_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQF02705.1|1620551_1622180_+	Glutathione-binding protein gsiB	NA	NA	NA	NA	NA
SQF02706.1|1622292_1623270_+	oligopeptide ABC transporter (permease)	NA	NA	NA	NA	NA
SQF02707.1|1623266_1624088_+	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	NA	NA	NA	NA	NA
SQF02708.1|1624099_1624903_+	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.9	6.5e-08
SQF02709.1|1624886_1625513_+	Dipeptide transport ATP-binding protein dppF	NA	A0A2H4P6Z4	Pseudomonas_phage	26.1	1.0e-05
SQF02710.1|1625595_1625796_-	CsbD-like protein	NA	J7KJ36	Streptococcus_phage	86.4	1.3e-21
SQF02711.1|1625964_1628436_-	histidine triad protein	NA	NA	NA	NA	NA
SQF02712.1|1628448_1629369_-	Laminin-binding surface protein	NA	NA	NA	NA	NA
SQF02713.1|1629546_1630680_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF02714.1|1630930_1634434_-	C5A peptidase	NA	NA	NA	NA	NA
SQF02715.1|1634867_1635527_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	91.3	1.9e-114
SQF02716.1|1635504_1636311_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	91.6	3.9e-130
