The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483327	Streptococcus pyogenes strain NCTC12069 genome assembly, chromosome: 1	1808407	36587	48947	1808407		Synechococcus_phage(28.57%)	8	NA	NA
SQF02878.1|36587_40361_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.5	3.6e-40
SQF02879.1|40521_41976_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.9	1.7e-54
SQF02880.1|42003_43026_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.4	6.9e-63
SQF02881.1|43193_43748_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
SQF02882.1|43929_45477_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.9	2.6e-45
SQF02883.1|45535_46660_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQF02884.1|46822_48178_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQF02885.1|48455_48947_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
LS483327	Streptococcus pyogenes strain NCTC12069 genome assembly, chromosome: 1	1808407	325491	331526	1808407		Streptococcus_phage(100.0%)	8	NA	NA
SQF03148.1|325491_326127_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.0e-65
SQF03149.1|326144_327020_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	47.9	1.8e-72
SQF03150.1|327682_328006_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF03151.1|328010_328874_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	3.8e-115
SQF03152.1|328900_329293_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF03153.1|329339_329969_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQF03154.1|330268_330625_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	66.7	2.8e-40
SQF03155.1|330698_331526_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.1	4.6e-126
>prophage 3
LS483327	Streptococcus pyogenes strain NCTC12069 genome assembly, chromosome: 1	1808407	339867	384120	1808407	bacteriocin,protease,tRNA,transposase	Bacillus_phage(20.0%)	52	NA	NA
SQF03159.1|339867_341865_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.2	2.7e-87
SQF03160.1|342358_343372_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.0	1.6e-96
SQF03161.1|343375_343864_+	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
SQF03162.1|343830_346011_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.2	1.2e-170
SQF03163.1|346214_346967_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQF03164.1|347426_347813_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF03165.1|348000_348252_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF03166.1|348340_348988_-	phage protein	NA	NA	NA	NA	NA
SQF03167.1|349347_349584_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQF03168.1|349576_350275_+	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.2	1.6e-10
SQF03169.1|350350_351310_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQF03170.1|351642_352980_+	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQF03171.1|353152_354535_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.0	8.5e-32
SQF03172.1|354565_355120_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQF03173.1|355119_355371_+	membrane protein	NA	NA	NA	NA	NA
SQF03174.1|355390_356086_+	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQF03175.1|356236_356578_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF03176.1|356674_357322_-	metalloregulator ScaR	NA	NA	NA	NA	NA
SQF03177.1|357467_358400_+	manganese-binding protein	NA	NA	NA	NA	NA
SQF03178.1|358463_359189_+	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.4e-17
SQF03179.1|359189_360044_+	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQF03180.1|360191_360998_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
SQF03181.1|361214_363620_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
SQF03182.1|363689_364043_-	integral membrane protein	NA	NA	NA	NA	NA
SQF03183.1|364286_364712_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQF03184.1|364817_365507_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQF03185.1|365829_366558_+	uridylate kinase	NA	NA	NA	NA	NA
SQF03186.1|366586_367144_+	ribosome recycling factor	NA	NA	NA	NA	NA
SQF03187.1|367252_368110_+	s1 RNA binding domain	NA	NA	NA	NA	NA
SQF03188.1|368182_368692_+	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQF03189.1|368688_368904_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF03190.1|369059_370229_+	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.5e-16
SQF03191.1|370543_372316_+	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQF03192.1|372474_373527_+	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQF03193.1|373572_374148_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQF03194.1|374306_374804_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQF03195.1|374784_375192_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF03196.1|375311_376208_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF03197.1|376228_376705_+	phosphohydrolase	NA	NA	NA	NA	NA
SQF03198.1|377201_377396_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF03199.1|377809_378040_+	truncated SilB	NA	NA	NA	NA	NA
SQF03200.1|378535_379246_-|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
SQF03201.1|379350_379587_-|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
SQF03202.1|379884_380109_+	blpU	NA	NA	NA	NA	NA
SQF03203.1|380086_380263_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF03204.1|380348_380576_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF03205.1|381476_381707_+|bacteriocin	bacteriocin class II with double-glycine leader peptide	bacteriocin	NA	NA	NA	NA
SQF03206.1|381755_382073_+	role in replication	NA	NA	NA	NA	NA
SQF03207.1|382452_382806_+	DNA-binding protein	NA	A0A1B1P773	Bacillus_phage	35.2	2.7e-06
SQF03208.1|382851_383022_+|transposase	transposase	transposase	A0A1P8CWQ3	Bacillus_phage	46.3	2.6e-07
SQF03209.1|383061_383277_+	Transposase	NA	U5P429	Shigella_phage	45.5	5.3e-10
SQF03210.1|383490_384120_+|transposase	truncated transposase	transposase	A0A1X9I5T2	Streptococcus_phage	96.6	4.8e-99
>prophage 4
LS483327	Streptococcus pyogenes strain NCTC12069 genome assembly, chromosome: 1	1808407	391651	420924	1808407	bacteriocin,tRNA,transposase	Bacillus_phage(14.29%)	33	NA	NA
SQF03216.1|391651_392074_+|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
SQF03217.1|392070_392220_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQF03218.1|392524_392770_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF03219.1|392784_392967_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF03220.1|393275_393425_-|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQF03221.1|393421_393844_-|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
SQF03222.1|394161_394389_+	BlpM	NA	NA	NA	NA	NA
SQF03223.1|394401_394602_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF03224.1|395140_395422_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF03225.1|395615_396017_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF03226.1|396270_397035_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF03227.1|397383_397830_+	histidine kinase	NA	NA	NA	NA	NA
SQF03228.1|398177_398447_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF03229.1|399517_400384_+	transcriptional regulator	NA	NA	NA	NA	NA
SQF03230.1|400555_401383_+	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	6.6e-16
SQF03231.1|401379_401973_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQF03232.1|402162_403665_+	ATPase	NA	A0A248XCZ8	Klebsiella_phage	41.2	6.7e-75
SQF03233.1|403810_404980_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF03234.1|405168_405405_+	preprotein translocase subunit	NA	NA	NA	NA	NA
SQF03235.1|405501_407832_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.8	5.2e-90
SQF03236.1|407834_408302_+	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	57.0	5.7e-41
SQF03237.1|408307_409027_+	glutamine cyclotransferase	NA	NA	NA	NA	NA
SQF03238.1|409143_409791_-	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQF03239.1|409840_410767_-	membrane protein	NA	NA	NA	NA	NA
SQF03240.1|410766_411450_-	membrane protein	NA	NA	NA	NA	NA
SQF03241.1|411660_412587_-	glucosyl transferase family 2	NA	V5USA4	Oenococcus_phage	47.5	2.6e-77
SQF03242.1|412731_413109_-	bleomycin resistance protein	NA	NA	NA	NA	NA
SQF03243.1|413119_413785_-	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA	NA
SQF03244.1|413833_414919_-	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQF03245.1|415092_416094_+	Catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
SQF03246.1|416224_417223_+	glycosyltransferase	NA	NA	NA	NA	NA
SQF03247.1|417224_418559_+	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
SQF03248.1|418980_420924_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.7	1.0e-120
>prophage 5
LS483327	Streptococcus pyogenes strain NCTC12069 genome assembly, chromosome: 1	1808407	522510	554917	1808407	bacteriocin,protease,tRNA,transposase	Streptococcus_phage(66.67%)	28	NA	NA
SQF03348.1|522510_523215_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF03349.1|523174_523633_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF03350.1|523778_526238_+	helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	48.2	9.6e-204
SQF03351.1|526572_527766_+	aspartate aminotransferase	NA	NA	NA	NA	NA
SQF03352.1|527786_529133_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.6	2.4e-55
SQF03353.1|529547_530438_+	P-loop ATPase protein family protein	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
SQF03354.1|530434_531412_+	transporter	NA	A1IMD5	Streptococcus_phage	74.2	2.1e-138
SQF03355.1|531408_532320_+	sporulation Regulator WhiA C terminal domain-containing protein	NA	Q7AWZ3	Streptococcus_phage	64.4	2.9e-105
SQF03356.1|532452_533850_+	dipeptidase	NA	NA	NA	NA	NA
SQF03357.1|534001_535549_+	high-affinity zinc uptake system protein	NA	NA	NA	NA	NA
SQF03358.1|535696_536419_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF03359.1|536438_537638_+	tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA	NA
SQF03360.1|537734_537995_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQF03361.1|538109_539051_-	DHH family protein	NA	NA	NA	NA	NA
SQF03362.1|539444_539894_+	flavodoxin	NA	NA	NA	NA	NA
SQF03363.1|540068_540353_+	chorismate mutase	NA	NA	NA	NA	NA
SQF03364.1|540345_541608_+	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	51.0	8.4e-95
SQF03365.1|541722_542070_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQF03366.1|543085_543655_+	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA	NA
SQF03367.1|543655_545608_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	46.2	8.9e-144
SQF03368.1|545975_547700_+	septation ring formation regulator	NA	NA	NA	NA	NA
SQF03369.1|547831_548290_-	hypothetical cytosolic protein	NA	W6LLD2	Streptococcus_phage	39.1	1.8e-18
SQF03370.1|548522_549830_+	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
SQF03371.1|550504_550666_+|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
SQF03372.1|550887_551838_+	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQF03373.1|551834_552893_+|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
SQF03374.1|552912_554271_+|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
SQF03375.1|554245_554917_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
>prophage 6
LS483327	Streptococcus pyogenes strain NCTC12069 genome assembly, chromosome: 1	1808407	615163	625767	1808407		Streptococcus_phage(57.14%)	9	NA	NA
SQF03430.1|615163_617374_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
SQF03431.1|617481_618645_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQF03432.1|618641_619328_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF03433.1|619421_620588_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF03434.1|620648_620990_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	5.9e-19
SQF03435.1|621210_622563_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.6	6.6e-29
SQF03436.1|622642_623920_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF03437.1|623949_624390_-	membrane protein	NA	NA	NA	NA	NA
SQF03438.1|624624_625767_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	8.3e-25
>prophage 7
LS483327	Streptococcus pyogenes strain NCTC12069 genome assembly, chromosome: 1	1808407	652737	689074	1808407	head,protease,tRNA,transposase	Bacillus_phage(25.0%)	34	NA	NA
SQF03464.1|652737_653469_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQF03465.1|653468_654461_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
SQF03466.1|654638_655697_+	regulatory protein	NA	NA	NA	NA	NA
SQF03467.1|655709_656633_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQF03468.1|656933_657602_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.7	2.8e-17
SQF03469.1|657598_658510_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQF03470.1|658506_660453_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQF03471.1|660551_661145_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.5e-11
SQF03472.1|661296_662004_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	2.5e-11
SQF03473.1|662159_662279_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQF03474.1|662960_663986_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQF03475.1|664489_664666_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF03476.1|664893_665274_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF03477.1|665273_666122_+	degV family protein	NA	NA	NA	NA	NA
SQF03478.1|666246_667455_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	6.9e-38
SQF03479.1|667451_669329_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.5	6.7e-64
SQF03480.1|670208_670619_+	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF03481.1|670699_672712_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQF03482.1|672931_673582_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF03483.1|673584_674253_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF03484.1|674261_675494_+	two component system histidine kinase	NA	NA	NA	NA	NA
SQF03485.1|675787_676666_+	mevalonate kinase	NA	NA	NA	NA	NA
SQF03486.1|676647_677592_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF03487.1|677584_678598_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF03488.1|678584_679574_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF03489.1|679803_681081_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF03490.1|681067_682243_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF03491.1|682451_683291_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQF03492.1|683370_683868_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQF03493.1|683887_684058_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF03494.1|684187_685417_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
SQF03495.1|685426_686026_+	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQF03496.1|686173_686917_+	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQF03497.1|686974_689074_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.4	5.1e-121
>prophage 8
LS483327	Streptococcus pyogenes strain NCTC12069 genome assembly, chromosome: 1	1808407	876875	902222	1808407	integrase	Streptococcus_phage(78.95%)	24	870524:870539	911357:911372
870524:870539	attL	TCTTTTAAATCAAGAT	NA	NA	NA	NA
SQF03679.1|876875_878438_+	GMP synthase	NA	A0A1V0SH76	Hokovirus	30.9	8.4e-20
SQF03680.1|878505_879699_-|integrase	site-specific recombinase, phage integrase family	integrase	H0UST3	Bacillus_phage	35.8	1.2e-45
SQF03681.1|879725_879926_-	hyptothetic protein	NA	NA	NA	NA	NA
SQF03682.1|880421_880652_-	polyribonucleotide nucleotidyltransferase	NA	A0A1S5SEX1	Streptococcus_phage	78.9	7.9e-28
SQF03683.1|880648_881131_-	RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	70.0	1.2e-49
SQF03684.1|881602_881956_+	transcriptional regulator, Tn916	NA	A0A1S5SFA6	Streptococcus_phage	90.5	1.3e-53
SQF03685.1|882299_884219_-	tetracycline resistance protein TetM	NA	A0A1S5SF82	Streptococcus_phage	97.0	0.0e+00
SQF03686.1|884595_885525_-	putative conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	56.6	1.1e-83
SQF03687.1|885541_886564_-	cell wall hydrolase, lytic transglycosylase	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	1.4e-132
SQF03688.1|886560_888588_-	transmembrane amino acid transporter protein	NA	A0A1S5SF30	Streptococcus_phage	65.7	1.8e-195
SQF03689.1|888584_891038_-	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	79.1	0.0e+00
SQF03690.1|891021_891417_-	TcpE family	NA	A0A1S5SEX7	Streptococcus_phage	75.0	1.7e-49
SQF03691.1|891487_892513_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF03692.1|892584_893085_-	Antirestriction protein	NA	A0A1S5SF25	Streptococcus_phage	61.1	5.4e-53
SQF03693.1|893146_893908_-	Protein of uncharacterised function (DUF3644)	NA	NA	NA	NA	NA
SQF03694.1|893967_894189_-	FIG086557: Conjugation related protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
SQF03695.1|894185_894458_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF03696.1|894454_895639_-	transcriptional regulator, Tn916	NA	A0A1S5SEX3	Streptococcus_phage	67.9	7.7e-159
SQF03697.1|895820_897224_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	67.2	3.0e-178
SQF03698.1|897245_898019_-	Uncharacterised protein	NA	A0A0C4UQZ7	Shigella_phage	25.5	1.4e-07
SQF03699.1|898028_898406_-	Bacterial protein of uncharacterised function (DUF961)	NA	A0A1S5SF96	Streptococcus_phage	77.2	5.6e-47
SQF03700.1|898426_898741_-	Bacterial protein of uncharacterised function (DUF961)	NA	A0A1S5SF38	Streptococcus_phage	76.7	7.0e-43
SQF03701.1|899089_900313_-	femAB family protein	NA	NA	NA	NA	NA
SQF03702.1|900677_902222_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	28.9	7.0e-51
911357:911372	attR	TCTTTTAAATCAAGAT	NA	NA	NA	NA
>prophage 9
LS483327	Streptococcus pyogenes strain NCTC12069 genome assembly, chromosome: 1	1808407	1008509	1053316	1808407	tRNA,transposase	Enterococcus_phage(25.0%)	42	NA	NA
SQF03802.1|1008509_1009034_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF03803.1|1009054_1009861_+|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	50.4	4.9e-64
SQF03804.1|1010160_1011033_-	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQF03805.1|1011256_1012567_+	membrane protein	NA	NA	NA	NA	NA
SQF03806.1|1012644_1012938_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF03807.1|1012970_1013267_+	DNA-binding protein	NA	NA	NA	NA	NA
SQF03808.1|1013369_1013693_+|transposase	transposase	transposase	U5P429	Shigella_phage	43.8	9.5e-19
SQF03809.1|1013709_1014444_-	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQF03810.1|1014555_1014921_+	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQF03811.1|1015040_1016261_-	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQF03812.1|1016634_1018119_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF03813.1|1018223_1018625_-	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQF03814.1|1018709_1019222_-	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	97.6	9.2e-93
SQF03815.1|1019639_1020998_-|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	F5CA72	Streptococcus_phi-m46.1-like_phage	99.1	7.8e-256
SQF03816.1|1021079_1022531_-	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQF03817.1|1022738_1023230_-	shikimate kinase	NA	NA	NA	NA	NA
SQF03818.1|1023222_1024506_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF03819.1|1024616_1025582_-	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQF03820.1|1025583_1026444_-	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQF03821.1|1026459_1027743_-	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQF03822.1|1027751_1028294_-	acetyltransferase family protein	NA	NA	NA	NA	NA
SQF03823.1|1028531_1029437_-	protein G-related alpha 2M-bindingprotein	NA	NA	NA	NA	NA
SQF03824.1|1029794_1031054_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF03825.1|1031227_1032424_-	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	4.5e-138
SQF03826.1|1032960_1035318_-	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
SQF03827.1|1035521_1036463_+	biotin-protein ligase	NA	NA	NA	NA	NA
SQF03828.1|1036736_1038407_-	DNA polymerase III subunits gamma and tau	NA	E7DN81	Pneumococcus_phage	40.6	5.1e-47
SQF03829.1|1038406_1038904_-	GAF domain-containing protein	NA	NA	NA	NA	NA
SQF03830.1|1039048_1039858_+	membrane protein	NA	NA	NA	NA	NA
SQF03831.1|1039910_1040174_-	membrane protein	NA	NA	NA	NA	NA
SQF03832.1|1040253_1040880_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	2.2e-35
SQF03833.1|1040977_1042063_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.6e-33
SQF03834.1|1042172_1043447_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQF03835.1|1043541_1044969_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQF03836.1|1045153_1046887_-	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQF03837.1|1046891_1047155_-	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQF03838.1|1047547_1047766_+	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
SQF03839.1|1047785_1049945_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.7	1.6e-263
SQF03840.1|1050148_1051108_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.5	3.7e-127
SQF03841.1|1051082_1052396_+	chloride channel protein	NA	NA	NA	NA	NA
SQF03842.1|1052534_1052828_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF03843.1|1052860_1053316_+|transposase	transposase	transposase	U5P429	Shigella_phage	35.5	4.0e-15
>prophage 10
LS483327	Streptococcus pyogenes strain NCTC12069 genome assembly, chromosome: 1	1808407	1067116	1142415	1808407	integrase,tail,portal,tRNA,capsid,protease,terminase	Streptococcus_phage(65.22%)	94	1094875:1094894	1139800:1139819
SQF03857.1|1067116_1068145_+|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQF03858.1|1068184_1069372_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF03859.1|1069485_1070076_-	S11 family peptidase	NA	NA	NA	NA	NA
SQF03860.1|1070300_1070534_-	beta-lactamase	NA	NA	NA	NA	NA
SQF03861.1|1070700_1071306_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.2	1.8e-58
SQF03862.1|1071402_1072443_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SQF03863.1|1072513_1074757_-	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	58.7	9.8e-54
SQF03864.1|1074737_1075400_-	comE operon 1 domain-containing protein	NA	NA	NA	NA	NA
SQF03865.1|1075599_1076340_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF03866.1|1076379_1077234_+	methyltransferase	NA	NA	NA	NA	NA
SQF03867.1|1077223_1077502_+	GIY-YIG catalytic domain-containing protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	1.8e-05
SQF03868.1|1077525_1079526_-	Kup system potassium uptake protein	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	34.0	1.3e-65
SQF03869.1|1079652_1081272_-	DEAD-box ATP-dependent RNA helicase CshA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	1.9e-59
SQF03870.1|1081578_1083123_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.1	1.1e-35
SQF03871.1|1083370_1084066_-	integral membrane family protein	NA	NA	NA	NA	NA
SQF03872.1|1084169_1085537_-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase	NA	NA	NA	NA	NA
SQF03873.1|1085735_1086782_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SQF03874.1|1086882_1087479_-	recombination protein	NA	NA	NA	NA	NA
SQF03875.1|1088267_1089047_-	formate transporter	NA	NA	NA	NA	NA
SQF03876.1|1089170_1089713_-	membrane protein	NA	NA	NA	NA	NA
SQF03877.1|1089873_1090395_-	3H domain-containing protein	NA	NA	NA	NA	NA
SQF03878.1|1090501_1091197_-	phosphoglyceromutase	NA	NA	NA	NA	NA
SQF03879.1|1091435_1092371_+	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	45.1	4.6e-66
SQF03880.1|1092670_1094533_-	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	33.8	2.4e-90
1094875:1094894	attL	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQF03881.1|1095063_1095246_-	paratox	NA	A3F673	Streptococcus_phage	76.7	3.1e-19
SQF03882.1|1095358_1096141_-	Enterotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	45.8	4.3e-49
SQF03883.1|1096387_1097512_-	phage protein, Fic family	NA	D7RWK9	Brochothrix_phage	49.1	3.1e-93
SQF03884.1|1097627_1098038_-	phage protein	NA	Q938J2	Temperate_phage	99.3	2.6e-69
SQF03885.1|1098045_1098495_-	phage protein	NA	Q938J2	Temperate_phage	100.0	9.1e-52
SQF03886.1|1098482_1099007_-	phage protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
SQF03887.1|1099146_1100355_-	phage-associated cell wall hydrolase	NA	A7J2B5	Streptococcus_phage	83.6	1.7e-206
SQF03888.1|1100470_1100698_-	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	5.8e-31
SQF03889.1|1100694_1100967_-	phage membrane protein	NA	A7J2B2	Streptococcus_phage	93.3	5.0e-37
SQF03890.1|1100976_1101615_-	phage protein	NA	A3F662	Streptococcus_phage	53.7	1.2e-44
SQF03891.1|1101617_1102046_-	phage protein	NA	A3F661	Streptococcus_phage	86.5	1.7e-63
SQF03892.1|1102057_1103944_-	gp58-like family protein	NA	Q938J9	Temperate_phage	85.0	3.6e-211
SQF03893.1|1103956_1104979_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	91.7	1.2e-168
SQF03894.1|1104975_1107120_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	93.3	0.0e+00
SQF03895.1|1107116_1107824_-	phage protein	NA	Q938K2	Temperate_phage	71.1	1.7e-92
SQF03896.1|1107823_1111747_-|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	48.8	5.0e-239
SQF03897.1|1111759_1111927_-	phage protein	NA	J7KBS0	Streptococcus_phage	87.3	2.9e-19
SQF03898.1|1111956_1112283_-	phage protein	NA	J7KK85	Streptococcus_phage	73.1	6.0e-37
SQF03899.1|1112335_1112944_-|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	70.5	2.3e-74
SQF03900.1|1112960_1113386_-	phage protein	NA	J7KBZ9	Streptococcus_phage	85.1	5.0e-68
SQF03901.1|1113382_1113760_-	phage protein	NA	J7KDM3	Streptococcus_phage	72.8	1.4e-45
SQF03902.1|1113756_1114104_-	phage protein	NA	J7KJ42	Streptococcus_phage	85.5	1.5e-49
SQF03903.1|1114100_1114403_-	phage protein	NA	J7KC36	Streptococcus_phage	87.0	6.1e-44
SQF03904.1|1114538_1115741_-|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	64.7	2.7e-135
SQF03905.1|1115766_1116432_-|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	77.7	4.6e-92
SQF03906.1|1116409_1117630_-|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.4	7.6e-186
SQF03907.1|1117663_1117888_-	phage protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
SQF03908.1|1117880_1118051_-	phage protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
SQF03909.1|1118047_1119802_-|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	96.2	0.0e+00
SQF03910.1|1119816_1120284_-|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
SQF03911.1|1120454_1120793_-	Phage endonuclease	NA	J7KH36	Streptococcus_phage	90.7	3.0e-55
SQF03912.1|1120834_1121296_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF03913.1|1121314_1122229_-	phage protein	NA	NA	NA	NA	NA
SQF03914.1|1122800_1123241_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	98.6	7.2e-78
SQF03915.1|1123515_1124151_-	phage protein	NA	L0P368	Streptococcus_phage	67.9	5.5e-87
SQF03916.1|1124150_1124552_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF03917.1|1124564_1124765_-	Uncharacterised protein	NA	A0A0E3T873	Gordonia_phage	45.3	4.6e-08
SQF03918.1|1124769_1125054_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	87.2	5.2e-37
SQF03919.1|1125063_1125333_-	phage protein	NA	A0A1P8VVR6	Streptococcus_phage	91.0	1.2e-43
SQF03920.1|1125329_1125614_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	97.9	2.7e-49
SQF03921.1|1125607_1125859_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	92.8	3.4e-40
SQF03922.1|1125855_1126212_-	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	94.9	1.8e-58
SQF03923.1|1126195_1126516_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	95.3	1.9e-51
SQF03924.1|1126512_1126926_-	phage protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	51.1	1.6e-15
SQF03925.1|1127187_1128663_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	84.2	2.4e-242
SQF03926.1|1128652_1129456_-	phage protein	NA	J7KH42	Streptococcus_phage	97.8	8.1e-152
SQF03927.1|1129467_1129926_-	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	94.1	2.2e-77
SQF03928.1|1129941_1131171_-	phage DNA/RNA helicase	NA	J7KK96	Streptococcus_phage	95.4	3.3e-229
SQF03929.1|1131272_1131953_-	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQF03930.1|1131953_1132436_-	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
SQF03931.1|1132583_1132898_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	95.2	2.7e-50
SQF03932.1|1132913_1133048_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	95.5	9.6e-18
SQF03933.1|1133049_1133361_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.6	1.4e-43
SQF03934.1|1133634_1133985_-	phage protein	NA	NA	NA	NA	NA
SQF03935.1|1134035_1134410_+	Uncharacterised protein	NA	A0A1S5SCT1	Streptococcus_phage	52.0	2.1e-25
SQF03936.1|1134389_1134530_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF03937.1|1134561_1135323_-	phage antirepressor protein	NA	A0A0C5AEJ9	Bacteriophage	61.9	3.6e-85
SQF03938.1|1135333_1135573_-	Cro/CI family phage transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	97.5	3.1e-35
SQF03939.1|1135665_1136307_+	phage protein	NA	J7KJ31	Streptococcus_phage	100.0	1.5e-116
SQF03940.1|1136405_1136564_-	Uncharacterised protein	NA	J7KH24	Streptococcus_phage	92.3	5.8e-22
SQF03941.1|1136622_1136838_+	Uncharacterised protein	NA	J7KBX0	Streptococcus_phage	97.1	8.8e-29
SQF03942.1|1136823_1136973_-	Uncharacterised protein	NA	J7KH12	Streptococcus_phage	91.8	4.3e-19
SQF03943.1|1137066_1137168_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF03944.1|1137342_1138131_+	Phage transcriptional repressor	NA	A0A1S5SD15	Streptococcus_phage	62.6	5.8e-86
SQF03945.1|1138140_1138446_+	phage membrane protein	NA	NA	NA	NA	NA
SQF03946.1|1138570_1139713_+|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
SQF03947.1|1139801_1140077_-	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
1139800:1139819	attR	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQF03948.1|1140175_1140763_-	membrane protein	NA	NA	NA	NA	NA
SQF03949.1|1140740_1141601_-	GDSL family lipase	NA	NA	NA	NA	NA
SQF03950.1|1141575_1142415_-	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
>prophage 11
LS483327	Streptococcus pyogenes strain NCTC12069 genome assembly, chromosome: 1	1808407	1423802	1471243	1808407	tail,head,terminase,capsid	Temperate_phage(64.91%)	69	NA	NA
SQF04203.1|1423802_1426631_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.7	6.5e-305
SQF04204.1|1426856_1427039_-	paratox	NA	A3F673	Streptococcus_phage	83.3	4.4e-21
SQF04205.1|1427275_1428076_+	streptodornase	NA	NA	NA	NA	NA
SQF04206.1|1428455_1428782_+	phage membrane protein	NA	NA	NA	NA	NA
SQF04207.1|1428831_1429698_-	phage protein	NA	Q938J2	Temperate_phage	99.7	1.1e-133
SQF04208.1|1429685_1430210_-	phage protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
SQF04209.1|1430349_1431555_-	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	85.5	9.8e-210
SQF04210.1|1431551_1431662_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	94.4	6.7e-09
SQF04211.1|1431665_1431851_-	phage protein	NA	Q938J5	Temperate_phage	96.7	1.1e-24
SQF04212.1|1431847_1432147_-	phage protein	NA	Q938J6	Temperate_phage	91.7	9.6e-42
SQF04213.1|1432157_1432790_-	phage protein	NA	Q938J7	Temperate_phage	47.6	2.9e-43
SQF04214.1|1432792_1433221_-	phage protein	NA	A3F661	Streptococcus_phage	86.5	6.4e-63
SQF04215.1|1433232_1435119_-	gp58-like family protein	NA	Q938J9	Temperate_phage	85.0	3.6e-211
SQF04216.1|1435133_1436249_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	74.4	1.8e-141
SQF04217.1|1436245_1438390_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	96.6	0.0e+00
SQF04218.1|1438386_1439103_-	phage protein	NA	Q938K2	Temperate_phage	99.2	7.2e-136
SQF04219.1|1439099_1442360_-	phage protein	NA	Q938K3	Temperate_phage	99.8	0.0e+00
SQF04220.1|1442349_1442931_-	phage Gp15 protein	NA	Q938K4	Temperate_phage	72.0	5.6e-78
SQF04221.1|1442939_1443374_-	phage protein	NA	Q938K5	Temperate_phage	74.3	4.3e-51
SQF04222.1|1443419_1443905_-|tail	major tail shaft protein	tail	Q938K6	Temperate_phage	76.9	6.1e-62
SQF04223.1|1443904_1444303_-|capsid	minor capsid protein	capsid	Q79S87	Temperate_phage	96.2	3.0e-67
SQF04224.1|1444299_1444656_-	phage protein	NA	Q79S88	Temperate_phage	96.6	6.5e-61
SQF04225.1|1444655_1444988_-|capsid	minor capsid protein - phage associated	capsid	Q79S86	Temperate_phage	94.5	2.6e-56
SQF04226.1|1444977_1445394_-	phage protein	NA	Q938K7	Temperate_phage	89.2	1.1e-51
SQF04227.1|1445447_1446266_-|head	putative major head protein	head	Q79S85	Temperate_phage	96.0	1.5e-140
SQF04228.1|1446269_1446878_-	phage protein	NA	Q938K8	Temperate_phage	92.6	2.4e-87
SQF04229.1|1447014_1447281_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	87.5	2.7e-35
SQF04230.1|1447354_1447582_-	phage protein	NA	NA	NA	NA	NA
SQF04231.1|1447578_1449075_-|capsid	phage minor capsid 2 family protein	capsid	Q938L1	Temperate_phage	78.0	1.0e-208
SQF04232.1|1449079_1450582_-|capsid	Minor capsid protein	capsid	Q938L2	Temperate_phage	96.6	4.6e-273
SQF04233.1|1450595_1451807_-|terminase	phage terminase	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
SQF04234.1|1451889_1452363_-	phage protein	NA	Q938L4	Temperate_phage	99.4	4.3e-76
SQF04235.1|1452413_1452791_-	phage transcriptional regulator	NA	Q938L5	Temperate_phage	100.0	1.7e-67
SQF04236.1|1453243_1453921_-	hypothetical amino acid ABC transporter ATP-binding protein	NA	Q938L6	Temperate_phage	99.6	2.5e-130
SQF04237.1|1453899_1454418_-	Chromosome partitioning protein parB	NA	Q938L7	Temperate_phage	100.0	1.5e-90
SQF04238.1|1455136_1455574_-	phage protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	99.3	1.4e-76
SQF04239.1|1455843_1455942_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF04240.1|1455938_1456232_-	phage protein	NA	A0A097PAR1	Streptococcus_pyogenes_phage	99.0	2.7e-49
SQF04241.1|1456279_1457044_-	Adenine-specific methyltransferase	NA	A0A1S5SE41	Streptococcus_phage	91.9	2.8e-133
SQF04242.1|1457033_1457516_-	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
SQF04243.1|1457519_1457804_-	phage protein	NA	A3F628	Streptococcus_phage	97.9	1.4e-42
SQF04244.1|1457800_1458214_-	phage protein	NA	Q938M1	Temperate_phage	65.2	4.9e-36
SQF04245.1|1458210_1458405_-	phage protein	NA	A3F626	Streptococcus_phage	91.9	2.6e-11
SQF04246.1|1458391_1458865_-	phage Holliday junction resolvase	NA	A0A286QMU6	Streptococcus_phage	48.8	4.6e-30
SQF04247.1|1458889_1459057_-	phage protein	NA	A0A1S5SEF3	Streptococcus_phage	55.6	6.0e-09
SQF04248.1|1459066_1459864_-	phage protein	NA	J7KGZ1	Streptococcus_phage	81.5	6.4e-125
SQF04249.1|1459860_1460790_-	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
SQF04250.1|1460792_1461122_-	phage protein	NA	J7KGX3	Streptococcus_phage	86.2	1.1e-46
SQF04251.1|1461177_1461384_-	phage protein	NA	NA	NA	NA	NA
SQF04252.1|1461392_1461533_-	phage protein	NA	NA	NA	NA	NA
SQF04253.1|1461538_1461751_-	phage protein	NA	Q938N1	Temperate_phage	58.6	5.4e-15
SQF04254.1|1461731_1462118_-	DNA replication protein dnaD	NA	Q938N2	Temperate_phage	77.5	1.1e-48
SQF04255.1|1462263_1462515_-	replication protein	NA	A0A141E1D1	Streptococcus_phage	39.0	7.4e-11
SQF04256.1|1462614_1462800_-	phage protein	NA	Q938N3	Temperate_phage	95.1	1.2e-23
SQF04257.1|1462828_1463086_-	phage protein	NA	NA	NA	NA	NA
SQF04258.1|1463192_1463405_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF04259.1|1463331_1463499_-	phage protein	NA	NA	NA	NA	NA
SQF04260.1|1463574_1463775_+	phage protein	NA	A0A1S5S8T9	Streptococcus_phage	70.8	3.1e-20
SQF04261.1|1463771_1463921_-	phage protein	NA	Q938N4	Temperate_phage	100.0	1.8e-20
SQF04262.1|1463953_1464682_-	phage antirepressor protein	NA	Q938N5	Temperate_phage	99.6	3.4e-133
SQF04263.1|1464692_1464884_-	phage protein	NA	A7J270	Streptococcus_phage	90.5	1.2e-24
SQF04264.1|1465679_1466039_+	XRE family transcriptional regulator	NA	Q938N6	Temperate_phage	100.0	1.1e-60
SQF04265.1|1466052_1466433_+	phage protein	NA	Q938N7	Temperate_phage	100.0	5.3e-69
SQF04266.1|1466443_1466965_+	phage protein	NA	Q938N8	Temperate_phage	100.0	2.3e-67
SQF04267.1|1467140_1468238_+	DNA integration/recombination/inversion protein	NA	Q938N9	Temperate_phage	98.1	1.6e-203
SQF04268.1|1468481_1469426_+	magnesium and cobalt transport protein	NA	NA	NA	NA	NA
SQF04269.1|1469558_1470215_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF04270.1|1470347_1470587_-	SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent	NA	NA	NA	NA	NA
SQF04271.1|1470751_1471243_-	single strand binding protein	NA	A0A286QNX2	Streptococcus_phage	74.2	1.7e-59
>prophage 12
LS483327	Streptococcus pyogenes strain NCTC12069 genome assembly, chromosome: 1	1808407	1726712	1746414	1808407	tRNA	Streptococcus_phage(56.25%)	27	NA	NA
SQF04495.1|1726712_1728695_-	DNA mismatch repair protein	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	2.3e-62
SQF04496.1|1728789_1729935_-	DNA integration/recombination/inversion protein	NA	A0A1X9I5Y5	Streptococcus_phage	44.9	3.5e-84
SQF04497.1|1730359_1730848_-|tRNA	FIG042921: similarity to aminoacyl-tRNA editing enzymes YbaK, ProX	tRNA	NA	NA	NA	NA
SQF04498.1|1731436_1732204_-	repressor protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
SQF04499.1|1732357_1732564_+	Cro/CI family phage transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
SQF04500.1|1732597_1733365_+	BRO family, N-terminal domain protein	NA	A0A0A7S0G2	Clostridium_phage	53.7	5.0e-26
SQF04501.1|1733374_1733998_+	BRO family, N-terminal domain protein	NA	A0A1W6JPC3	Staphylococcus_phage	42.8	2.7e-38
SQF04502.1|1733997_1734267_+	Prophage antirepressor	NA	NA	NA	NA	NA
SQF04503.1|1734526_1734697_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF04504.1|1734920_1735094_+	phage protein	NA	NA	NA	NA	NA
SQF04505.1|1735231_1735684_+	phage protein	NA	NA	NA	NA	NA
SQF04506.1|1735785_1736118_+	phage protein	NA	NA	NA	NA	NA
SQF04507.1|1736114_1736336_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF04508.1|1736338_1736530_+	phage protein	NA	NA	NA	NA	NA
SQF04509.1|1736541_1736871_+	phage protein	NA	NA	NA	NA	NA
SQF04510.1|1736873_1737146_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	61.2	1.6e-19
SQF04511.1|1737146_1738013_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	73.1	5.2e-120
SQF04512.1|1738024_1738693_+	Predicted P-loop ATPase and inactivated derivatives	NA	A0A141E0U2	Streptococcus_phage	25.9	1.3e-06
SQF04513.1|1738707_1739418_+	Predicted P-loop ATPase and inactivated derivatives	NA	A0A0A7RTG3	Clostridium_phage	30.0	8.0e-18
SQF04514.1|1739710_1739965_+	phage protein	NA	NA	NA	NA	NA
SQF04515.1|1739961_1740135_+	Uncharacterised protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
SQF04516.1|1740315_1740825_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	62.5	4.2e-29
SQF04517.1|1740899_1741388_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.3	2.0e-44
SQF04518.1|1741791_1742154_+	phage protein	NA	A0A2H4JFS1	uncultured_Caudovirales_phage	30.8	3.0e-05
SQF04519.1|1742128_1742512_+	phage protein	NA	J7KDQ1	Streptococcus_phage	41.7	9.9e-15
SQF04520.1|1742712_1743261_+	secreted phage protein	NA	NA	NA	NA	NA
SQF04521.1|1743858_1746414_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	22.8	3.0e-43
