The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483329	Streptococcus pyogenes strain NCTC12058 genome assembly, chromosome: 1	1768863	35764	48937	1768863		Synechococcus_phage(44.44%)	10	NA	NA
SQF06551.1|35764_36037_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	43.9	1.6e-06
SQF06552.1|35984_36500_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3HI61	Synechococcus_phage	42.0	6.6e-30
SQF06553.1|36575_40349_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.4	6.1e-40
SQF06554.1|40509_41964_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	8.3e-54
SQF06555.1|41991_43014_+	phosphoribosylaminoimidazole synthetase	NA	R9TMC7	Synechococcus_phage	41.8	3.1e-63
SQF06556.1|43181_43736_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	1.8e-25
SQF06557.1|43919_45467_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	51.8	2.8e-44
SQF06558.1|45524_46649_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQF06559.1|46811_48167_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQF06560.1|48325_48937_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.1e-18
>prophage 2
LS483329	Streptococcus pyogenes strain NCTC12058 genome assembly, chromosome: 1	1768863	93360	104759	1768863	tRNA	Streptococcus_phage(55.56%)	19	NA	NA
SQF06611.1|93360_93978_+	phage antirepressor protein	NA	A0A2H4JB17	uncultured_Caudovirales_phage	44.0	2.6e-41
SQF06612.1|93977_94247_+	Prophage antirepressor	NA	NA	NA	NA	NA
SQF06613.1|94503_94677_+	phage protein	NA	NA	NA	NA	NA
SQF06614.1|94818_95271_+	phage protein	NA	NA	NA	NA	NA
SQF06615.1|95372_95714_+	phage protein	NA	NA	NA	NA	NA
SQF06616.1|95700_95922_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF06617.1|95924_96116_+	phage protein	NA	NA	NA	NA	NA
SQF06618.1|96127_96457_+	phage protein	NA	NA	NA	NA	NA
SQF06619.1|96459_96732_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
SQF06620.1|96732_97599_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	73.1	4.0e-120
SQF06621.1|98090_99005_+	Predicted P-loop ATPase and inactivated derivatives	NA	A0A0A7RTG3	Clostridium_phage	30.0	4.9e-28
SQF06622.1|99297_99552_+	phage protein	NA	NA	NA	NA	NA
SQF06623.1|99548_99722_+	phage protein	NA	A0A1X9I5U0	Streptococcus_phage	57.9	5.6e-10
SQF06624.1|99902_100412_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.1e-29
SQF06625.1|100485_100974_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.3	4.0e-45
SQF06626.1|101376_101739_+	phage protein	NA	A0A2H4JFS1	uncultured_Caudovirales_phage	29.9	3.9e-05
SQF06627.1|101713_101881_+	phage protein	NA	NA	NA	NA	NA
SQF06628.1|102286_102856_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF06629.1|103499_104759_-|tRNA	tyrosyl-tRNA synthetase	tRNA	A0A1S6UA79	Serratia_phage	40.5	1.0e-71
>prophage 3
LS483329	Streptococcus pyogenes strain NCTC12058 genome assembly, chromosome: 1	1768863	351433	357468	1768863		Streptococcus_phage(100.0%)	8	NA	NA
SQF06856.1|351433_352069_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.0e-65
SQF06857.1|352086_352962_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	47.9	1.8e-72
SQF06858.1|353624_353948_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF06859.1|353952_354816_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	1.5e-114
SQF06860.1|354842_355235_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF06861.1|355281_355911_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQF06862.1|356210_356567_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	66.7	2.8e-40
SQF06863.1|356640_357468_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.5	4.2e-127
>prophage 4
LS483329	Streptococcus pyogenes strain NCTC12058 genome assembly, chromosome: 1	1768863	452458	558594	1768863	capsid,head,protease,terminase,transposase,tail,integrase,tRNA	Streptococcus_phage(45.07%)	118	474832:474851	516247:516266
SQF06953.1|452458_455260_+|tRNA	isoleucyl-tRNA synthetase	tRNA	H2EEZ0	Moumouvirus	26.9	3.2e-70
SQF06954.1|455523_455826_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF06955.1|455876_456332_-	mutT/nudix family protein	NA	NA	NA	NA	NA
SQF06956.1|456459_458742_-	ATP-dependent endopeptidase clp ATP-binding subunit	NA	A0A2C9CYX3	Yersinia_phage	39.6	1.1e-124
SQF06957.1|459040_459271_+	Protein of uncharacterised function (DUF1797)	NA	NA	NA	NA	NA
SQF06958.1|459396_460083_+	arginine transport system permease	NA	NA	NA	NA	NA
SQF06959.1|460082_460817_+	arginine transport ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	2.8e-34
SQF06960.1|460965_462375_+	deoxyribodipyrimidine photolyase	NA	A0A1V0SGL1	Hokovirus	32.8	4.4e-60
SQF06961.1|462552_464247_+	phosphoglucomutase	NA	A0A1X9I671	Streptococcus_phage	42.4	1.6e-128
SQF06962.1|464453_465308_+	tetrahydrofolate dehydrogenase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.0e-39
SQF06963.1|465460_466801_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SIT1	Klosneuvirus	30.9	1.1e-39
SQF06964.1|466778_466994_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
SQF06965.1|466993_467866_+	dimethylallyltransferase	NA	NA	NA	NA	NA
SQF06966.1|467858_468686_+	hemolysin	NA	NA	NA	NA	NA
SQF06967.1|468672_469143_+	arginine repressor	NA	NA	NA	NA	NA
SQF06968.1|469164_470826_+	DNA repair protein recN	NA	NA	NA	NA	NA
SQF06969.1|471033_472008_+	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
SQF06970.1|472235_473075_+	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
SQF06971.1|473049_473910_+	GDSL family lipase	NA	NA	NA	NA	NA
SQF06972.1|473887_474475_+	membrane protein	NA	NA	NA	NA	NA
SQF06973.1|474573_474849_+	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
474832:474851	attL	AAAGACGCTGTTAAATAATT	NA	NA	NA	NA
SQF06974.1|474938_476081_-|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
SQF06975.1|476209_476476_-	phage protein	NA	NA	NA	NA	NA
SQF06976.1|476487_476868_-	peptidase	NA	A0A1S5SFH2	Streptococcus_phage	61.9	6.1e-41
SQF06977.1|476871_477144_-	Cro/CI family phage transcriptional regulator	NA	Q7Y4M0	Streptococcus_phage	72.8	4.8e-32
SQF06978.1|477915_478065_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF06979.1|478371_478563_+	phage protein	NA	A7J270	Streptococcus_phage	92.1	4.0e-25
SQF06980.1|478574_479228_+	prophage LambdaSa1, antirepressor	NA	A0A2H4IZX7	uncultured_Caudovirales_phage	59.7	4.4e-71
SQF06981.1|479239_479398_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF06982.1|479326_479587_-	Uncharacterised protein	NA	M1PS67	Streptococcus_phage	70.9	5.8e-27
SQF06983.1|479728_479938_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF06984.1|480017_480266_+	Uncharacterised protein	NA	A0A141E1M0	Streptococcus_phage	69.5	1.6e-26
SQF06985.1|480239_480455_-	Uncharacterised protein	NA	A0A1S5SA41	Streptococcus_phage	61.4	1.9e-15
SQF06986.1|480561_480873_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.6	1.4e-43
SQF06987.1|480874_481045_+	phage protein	NA	A7J273	Streptococcus_phage	87.5	2.9e-19
SQF06988.1|481037_481223_+	phage protein	NA	NA	NA	NA	NA
SQF06989.1|481250_481637_+	phage protein	NA	A7J274	Streptococcus_phage	87.4	1.4e-56
SQF06990.1|481633_481783_+	phage protein	NA	A7J275	Streptococcus_phage	88.0	8.5e-15
SQF06991.1|482126_482330_+	phage protein	NA	A7J276	Streptococcus_phage	98.5	1.6e-32
SQF06992.1|482418_482718_+	phage protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
SQF06993.1|482717_483875_+	phage protein	NA	A7J278	Streptococcus_phage	97.9	3.0e-216
SQF06994.1|483889_484447_+	phage protein	NA	D2J040	Enterococcus_phage	59.0	8.6e-52
SQF06995.1|484489_486412_+	phage DNA polymerase	NA	A7J280	Streptococcus_phage	98.4	0.0e+00
SQF06996.1|486416_488801_+	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	94.6	8.2e-277
SQF06997.1|489186_489462_+	phage protein	NA	A7J283	Streptococcus_phage	98.9	3.5e-46
SQF06998.1|489458_490781_+	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.7	3.0e-252
SQF06999.1|490781_490952_+	phage protein	NA	A7J285	Streptococcus_phage	92.3	9.0e-21
SQF07000.1|490944_491217_+	phage membrane protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
SQF07001.1|491219_491366_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF07002.1|491349_491766_+	phage protein	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
SQF07003.1|491885_492581_+	phage protein	NA	A0A2H4J4R0	uncultured_Caudovirales_phage	34.5	4.4e-29
SQF07004.1|492582_493869_+|terminase	phage terminase	terminase	A0A1S5SA45	Streptococcus_phage	85.0	5.9e-221
SQF07005.1|493882_495385_+|capsid	Minor capsid protein	capsid	Q938L2	Temperate_phage	99.6	5.9e-281
SQF07006.1|495389_496868_+|capsid	capsid protein	capsid	Q938L1	Temperate_phage	99.6	9.0e-274
SQF07007.1|496839_497079_+	phage protein	NA	Q938L0	Temperate_phage	100.0	2.8e-36
SQF07008.1|497140_497407_+	putative phage associated protein	NA	Q938K9	Temperate_phage	95.5	1.1e-36
SQF07009.1|497538_498147_+	phage protein	NA	Q938K8	Temperate_phage	95.0	4.0e-95
SQF07010.1|498150_498969_+|head	putative major head protein	head	Q79S85	Temperate_phage	99.3	9.8e-145
SQF07011.1|499022_499439_+	phage protein	NA	Q938K7	Temperate_phage	98.2	3.6e-55
SQF07012.1|499401_499761_+|capsid	minor capsid protein - phage associated	capsid	Q79S86	Temperate_phage	100.0	1.0e-58
SQF07013.1|499760_500117_+	phage protein	NA	Q79S88	Temperate_phage	100.0	4.5e-62
SQF07014.1|500113_500512_+|capsid	minor capsid protein	capsid	Q79S87	Temperate_phage	100.0	3.5e-71
SQF07015.1|500511_500982_+|tail	major tail shaft protein	tail	Q938K6	Temperate_phage	100.0	8.0e-83
SQF07016.1|501034_501469_+	phage protein	NA	Q938K5	Temperate_phage	99.3	2.9e-71
SQF07017.1|501472_502054_+	bacteriophage Gp15 family protein	NA	Q938K4	Temperate_phage	98.4	1.6e-104
SQF07018.1|502043_505304_+	phage protein	NA	Q938K3	Temperate_phage	98.3	0.0e+00
SQF07019.1|505300_506017_+	phage protein	NA	Q938K2	Temperate_phage	98.7	3.6e-135
SQF07020.1|506013_508161_+	Phage endopeptidase	NA	Q938K1	Temperate_phage	94.9	0.0e+00
SQF07021.1|508157_509381_+	phage protein	NA	A3F657	Streptococcus_phage	41.3	6.7e-49
SQF07022.1|509382_509697_+	phage protein	NA	NA	NA	NA	NA
SQF07023.1|509707_511531_+	phage protein	NA	Q938J9	Temperate_phage	79.9	1.1e-212
SQF07024.1|511539_511968_+	phage protein	NA	A3F661	Streptococcus_phage	92.2	2.8e-66
SQF07025.1|511970_512582_+	phage protein	NA	Q938J7	Temperate_phage	88.2	3.7e-80
SQF07026.1|512592_512922_+	Uncharacterised protein	NA	A3F663	Streptococcus_phage	99.0	6.2e-50
SQF07027.1|512923_513256_+	N-acetylmuramoyl-L-alanine amidase	NA	A3F664	Streptococcus_phage	100.0	5.7e-51
SQF07028.1|513257_514010_+	phage-associated cell wall hydrolase	NA	A3F665	Streptococcus_phage	97.2	2.1e-141
SQF07029.1|514078_514786_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
SQF07030.1|514896_515655_-	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQF07031.1|515894_516077_+	paratox	NA	A3F673	Streptococcus_phage	81.7	2.0e-21
SQF07032.1|516597_518460_+	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	33.7	7.0e-90
516247:516266	attR	AAAGACGCTGTTAAATAATT	NA	NA	NA	NA
SQF07033.1|518759_519695_-	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	45.1	7.9e-66
SQF07034.1|519933_520629_+	phosphoglyceromutase	NA	NA	NA	NA	NA
SQF07035.1|520735_521257_+	3H domain-containing protein	NA	NA	NA	NA	NA
SQF07036.1|521417_521960_+	membrane protein	NA	NA	NA	NA	NA
SQF07037.1|522083_522863_+	formate transporter	NA	NA	NA	NA	NA
SQF07038.1|523659_524256_+	recombination protein	NA	NA	NA	NA	NA
SQF07039.1|524356_525403_+	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SQF07040.1|525593_526985_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
SQF07041.1|527064_527760_+	integral membrane family protein	NA	NA	NA	NA	NA
SQF07042.1|528007_529552_+	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.1	8.3e-36
SQF07043.1|529858_531478_+	DEAD-box ATP-dependent RNA helicase CshA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	1.9e-59
SQF07044.1|531604_533605_+	Kup system potassium uptake protein	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	34.0	1.1e-64
SQF07045.1|533628_533907_-	GIY-YIG catalytic domain-containing protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	7.9e-06
SQF07046.1|533896_534751_-	methyltransferase	NA	NA	NA	NA	NA
SQF07047.1|534790_535531_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF07048.1|535730_536393_+	comE operon 1 domain-containing protein	NA	NA	NA	NA	NA
SQF07049.1|536373_538617_+	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.2	4.0e-55
SQF07050.1|538687_539728_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SQF07051.1|539824_540430_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	52.7	3.9e-58
SQF07052.1|540596_540830_+	beta-lactamase	NA	NA	NA	NA	NA
SQF07053.1|541054_541645_+	S11 family peptidase	NA	NA	NA	NA	NA
SQF07054.1|541758_542979_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF07055.1|542983_544012_-|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQF07056.1|544213_544918_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQF07057.1|545036_545753_+	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQF07058.1|546048_547011_+	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQF07059.1|547023_548829_+	oligoendopeptidase F	NA	NA	NA	NA	NA
SQF07060.1|549204_550401_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF07061.1|550502_551174_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	1.9e-08
SQF07062.1|551236_552292_+	foldase protein prsA 1	NA	NA	NA	NA	NA
SQF07063.1|552678_555297_+|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	34.1	5.1e-62
SQF07064.1|555482_555617_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF07065.1|555657_555873_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQF07066.1|555869_556631_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF07067.1|556649_557345_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF07068.1|557436_557658_-|transposase	transposase	transposase	U5P429	Shigella_phage	42.9	4.2e-10
SQF07069.1|557812_558268_-|transposase	transposase	transposase	U5P429	Shigella_phage	35.5	9.0e-15
SQF07070.1|558300_558594_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 5
LS483329	Streptococcus pyogenes strain NCTC12058 genome assembly, chromosome: 1	1768863	875087	930262	1768863	transposase,protease,tRNA,head	Bacillus_virus(23.08%)	52	NA	NA
SQF07367.1|875087_875987_-|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQF07368.1|876120_876297_+	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQF07369.1|876414_877323_-	exfoliative toxin	NA	NA	NA	NA	NA
SQF07370.1|877559_877979_-	glutathione S-transferase	NA	NA	NA	NA	NA
SQF07371.1|878289_879276_-	Rhodanese domain protein UPF0176, Firmicutes subgroup	NA	NA	NA	NA	NA
SQF07372.1|879471_879774_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF07373.1|880320_881526_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQF07374.1|881915_882146_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF07375.1|882209_883232_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF07376.1|883354_885778_-	topoisomerase IV subunit	NA	G3M9Z5	Bacillus_virus	33.3	3.5e-97
SQF07377.1|885904_887854_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.0	3.3e-122
SQF07378.1|887988_888630_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF07379.1|888687_889956_-	dihydroorotase	NA	NA	NA	NA	NA
SQF07380.1|890087_890741_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	39.7	5.8e-39
SQF07381.1|890873_891524_-	amino-acid ABC transporter permease yckA	NA	NA	NA	NA	NA
SQF07382.1|891552_892416_-	cystine-binding protein	NA	NA	NA	NA	NA
SQF07383.1|892533_893988_-	amidase	NA	NA	NA	NA	NA
SQF07384.1|894184_894814_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQF07385.1|894871_895564_-	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQF07386.1|895840_896377_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF07387.1|896649_897504_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQF07388.1|897583_898372_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
SQF07389.1|898364_899078_-	Purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQF07390.1|899740_900550_-	purine nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	41.9	8.7e-53
SQF07391.1|900533_900974_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	54.5	1.3e-34
SQF07392.1|900992_902204_-	phosphopentomutase	NA	NA	NA	NA	NA
SQF07393.1|902280_902964_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQF07394.1|903342_905442_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.5	2.5e-120
SQF07395.1|905499_906243_-	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQF07396.1|906390_906990_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQF07397.1|906999_908229_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
SQF07398.1|908358_908529_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF07399.1|908548_909046_-	dihydrofolate reductase	NA	A0A2H5BFT3	Microbacterium_phage	29.7	2.5e-10
SQF07400.1|909125_909965_-	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQF07401.1|910173_911349_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF07402.1|911335_912607_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF07403.1|912842_913832_-	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF07404.1|913818_914832_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF07405.1|914824_915769_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF07406.1|915750_916629_-	mevalonate kinase	NA	NA	NA	NA	NA
SQF07407.1|916922_918155_-	two component system histidine kinase	NA	NA	NA	NA	NA
SQF07408.1|918163_918832_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF07409.1|918834_919485_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF07410.1|919704_921717_+	5'-nucleotidase	NA	NA	NA	NA	NA
SQF07411.1|921798_922209_-	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF07412.1|923098_924976_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.7	3.9e-64
SQF07413.1|924972_926181_-|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	5.3e-38
SQF07414.1|926305_927154_-	degV family protein	NA	NA	NA	NA	NA
SQF07415.1|927153_927534_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF07416.1|927760_927937_-	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF07417.1|928435_929461_+|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQF07418.1|930142_930262_+|transposase	degenerate transposase	transposase	NA	NA	NA	NA
>prophage 6
LS483329	Streptococcus pyogenes strain NCTC12058 genome assembly, chromosome: 1	1768863	967611	978214	1768863		Streptococcus_phage(57.14%)	9	NA	NA
SQF07454.1|967611_968754_-	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.0	4.1e-24
SQF07455.1|968988_969429_+	membrane protein	NA	NA	NA	NA	NA
SQF07456.1|969458_970727_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF07457.1|970814_972167_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.0	4.5e-30
SQF07458.1|972387_972729_-	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	5.9e-19
SQF07459.1|972789_973956_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF07460.1|974049_974736_-	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	69.3	2.4e-88
SQF07461.1|974732_975896_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQF07462.1|976003_978214_+	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
>prophage 7
LS483329	Streptococcus pyogenes strain NCTC12058 genome assembly, chromosome: 1	1768863	1164145	1195979	1768863	transposase,protease,tRNA,bacteriocin	Tupanvirus(14.29%)	37	NA	NA
SQF07632.1|1164145_1166089_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.7	1.0e-120
SQF07633.1|1166510_1167845_-	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
SQF07634.1|1167846_1168845_-	glycosyltransferase	NA	NA	NA	NA	NA
SQF07635.1|1168975_1169977_-	Catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
SQF07636.1|1170150_1171236_+	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQF07637.1|1171284_1171950_+	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA	NA
SQF07638.1|1171960_1172338_+	bleomycin resistance protein	NA	NA	NA	NA	NA
SQF07639.1|1172482_1173409_+	glucosyl transferase family 2	NA	V5USA4	Oenococcus_phage	47.5	2.6e-77
SQF07640.1|1173619_1174303_+	membrane protein	NA	NA	NA	NA	NA
SQF07641.1|1174302_1175229_+	membrane protein	NA	NA	NA	NA	NA
SQF07642.1|1175278_1175926_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQF07643.1|1176043_1176763_-	glutamine cyclotransferase	NA	NA	NA	NA	NA
SQF07644.1|1176768_1177236_-	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	56.3	1.7e-40
SQF07645.1|1177238_1179569_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	40.0	1.8e-90
SQF07646.1|1179665_1179902_-	preprotein translocase subunit	NA	NA	NA	NA	NA
SQF07647.1|1180090_1181035_-	multidrug resistance protein B	NA	NA	NA	NA	NA
SQF07648.1|1181471_1182974_-	ATPase	NA	A0A248XCZ8	Klebsiella_phage	43.5	1.4e-77
SQF07649.1|1183163_1183757_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQF07650.1|1183753_1184581_-	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.8	1.3e-16
SQF07651.1|1184752_1185619_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF07652.1|1186689_1186959_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF07653.1|1187306_1187705_-	histidine kinase	NA	NA	NA	NA	NA
SQF07654.1|1187797_1188865_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF07655.1|1189109_1189520_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF07656.1|1189713_1189995_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF07657.1|1190042_1190237_-|bacteriocin	bacteriocin-associated protein	bacteriocin	NA	NA	NA	NA
SQF07658.1|1190530_1190731_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF07659.1|1190743_1190971_-	BlpM	NA	NA	NA	NA	NA
SQF07660.1|1191287_1191710_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF07661.1|1191706_1191856_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQF07662.1|1192193_1192376_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF07663.1|1192488_1192623_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF07664.1|1193020_1193275_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF07665.1|1193580_1194057_-	phosphohydrolase	NA	NA	NA	NA	NA
SQF07666.1|1194077_1194974_-	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF07667.1|1195093_1195426_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF07668.1|1195481_1195979_-|protease	metalloprotease	protease	NA	NA	NA	NA
>prophage 8
LS483329	Streptococcus pyogenes strain NCTC12058 genome assembly, chromosome: 1	1768863	1687586	1705792	1768863		Streptococcus_phage(53.33%)	22	NA	NA
SQF08102.1|1687586_1689569_-	DNA mismatch repair protein	NA	A0A1B2LRQ5	Wolbachia_phage	30.3	2.3e-62
SQF08103.1|1689663_1690809_-	DNA integration/recombination/inversion protein	NA	A0A1X9I5Y5	Streptococcus_phage	44.9	7.9e-84
SQF08104.1|1692077_1692845_-	repressor protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
SQF08105.1|1692998_1693205_+	Cro/CI family phage transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
SQF08106.1|1693238_1694006_+	BRO family, N-terminal domain protein	NA	A0A0A7S0G2	Clostridium_phage	53.7	5.0e-26
SQF08107.1|1694015_1694639_+	BRO family, N-terminal domain protein	NA	A0A1W6JPC3	Staphylococcus_phage	43.3	2.5e-39
SQF08108.1|1694638_1694908_+	Prophage antirepressor	NA	NA	NA	NA	NA
SQF08109.1|1695163_1695505_+	phage protein	NA	NA	NA	NA	NA
SQF08110.1|1695491_1695713_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF08111.1|1695715_1695907_+	phage protein	NA	NA	NA	NA	NA
SQF08112.1|1695918_1696248_+	phage protein	NA	NA	NA	NA	NA
SQF08113.1|1696250_1696523_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
SQF08114.1|1696523_1697381_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	74.8	4.5e-124
SQF08115.1|1697349_1699038_+	phage/plasmid primase, P4 family, C-terminal domain protein	NA	A0A1X9I717	Streptococcus_phage	82.1	2.5e-259
SQF08116.1|1699324_1699498_+	Uncharacterised protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
SQF08117.1|1699503_1699677_+	phage protein	NA	NA	NA	NA	NA
SQF08118.1|1699678_1700188_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.1e-29
SQF08119.1|1700261_1700750_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.3	5.2e-45
SQF08120.1|1701153_1701516_+	phage protein	NA	A0A2H4JFS1	uncultured_Caudovirales_phage	30.8	3.5e-06
SQF08121.1|1701490_1701874_+	phage protein	NA	Q938L8	Temperate_phage	42.1	3.7e-14
SQF08122.1|1702074_1702623_+	secreted phage protein	NA	NA	NA	NA	NA
SQF08123.1|1703236_1705792_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	23.3	5.2e-43
