The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483332	Streptococcus pyogenes strain NCTC12696 genome assembly, chromosome: 1	1845052	36588	48939	1845052		Synechococcus_phage(28.57%)	8	NA	NA
SQF11699.1|36588_40362_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.9	1.4e-39
SQF11700.1|40522_41977_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	3.7e-54
SQF11701.1|42004_43027_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.1	1.2e-62
SQF11702.1|43194_43749_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
SQF11703.1|43921_45469_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
SQF11704.1|45527_46652_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQF11705.1|46814_48170_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQF11706.1|48327_48939_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.1	1.4e-18
>prophage 2
LS483332	Streptococcus pyogenes strain NCTC12696 genome assembly, chromosome: 1	1845052	326696	332729	1845052		Streptococcus_phage(100.0%)	9	NA	NA
SQF11967.1|326696_327332_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	1.2e-65
SQF11968.1|327349_328225_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	44.8	6.3e-65
SQF11969.1|328243_328483_+	Tpl protein	NA	NA	NA	NA	NA
SQF11970.1|328886_329210_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF11971.1|329214_330078_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
SQF11972.1|330104_330497_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF11973.1|330543_331173_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQF11974.1|331471_331828_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.1e-39
SQF11975.1|331901_332729_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.9	1.7e-128
>prophage 3
LS483332	Streptococcus pyogenes strain NCTC12696 genome assembly, chromosome: 1	1845052	341072	388249	1845052	tRNA,bacteriocin,transposase,protease	Mycobacterium_phage(13.33%)	52	NA	NA
SQF11979.1|341072_343070_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.0	1.3e-86
SQF11980.1|343565_344579_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	52.7	5.5e-97
SQF11981.1|344582_345071_+	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.0e-11
SQF11982.1|345037_347218_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.2	9.5e-171
SQF11983.1|347423_348176_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQF11984.1|348635_349238_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF11985.1|349513_349765_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF11986.1|349858_350491_-	phage protein	NA	NA	NA	NA	NA
SQF11987.1|351001_351970_-	Protein of uncharacterised function (DUF3644)	NA	A0A0N9RUA4	Staphylococcus_phage	52.3	1.2e-88
SQF11988.1|352605_352842_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQF11989.1|352834_353533_+	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.2	1.2e-10
SQF11990.1|353600_354560_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQF11991.1|354892_356230_+	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQF11992.1|356402_357785_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.0	8.5e-32
SQF11993.1|357815_358370_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQF11994.1|358369_358621_+	membrane protein	NA	NA	NA	NA	NA
SQF11995.1|358640_359336_+	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQF11996.1|359486_359828_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF11997.1|359926_360574_-	metalloregulator ScaR	NA	NA	NA	NA	NA
SQF11998.1|360719_361652_+	manganese-binding protein	NA	NA	NA	NA	NA
SQF11999.1|361715_362441_+	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.8e-17
SQF12000.1|362441_363296_+	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQF12001.1|363443_364250_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
SQF12002.1|364466_366872_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	50.5	3.8e-88
SQF12003.1|366941_367295_-	integral membrane protein	NA	NA	NA	NA	NA
SQF12004.1|367538_367964_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQF12005.1|368069_368759_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQF12006.1|369081_369810_+	uridylate kinase	NA	NA	NA	NA	NA
SQF12007.1|369838_370396_+	ribosome recycling factor	NA	NA	NA	NA	NA
SQF12008.1|370504_371362_+	s1 RNA binding domain	NA	NA	NA	NA	NA
SQF12009.1|371434_371944_+	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQF12010.1|371940_372156_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF12011.1|372311_373493_+	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	39.6	2.1e-15
SQF12012.1|373806_375579_+	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQF12013.1|375737_376790_+	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQF12014.1|376835_377411_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQF12015.1|377569_378067_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQF12016.1|378047_378455_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF12017.1|378574_379471_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF12018.1|379491_379968_+	phosphohydrolase	NA	NA	NA	NA	NA
SQF12019.1|380464_380659_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12020.1|381072_381303_+	truncated SilB	NA	NA	NA	NA	NA
SQF12021.1|381798_382509_-|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
SQF12022.1|382613_382850_-|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
SQF12023.1|383147_383372_+	blpU	NA	NA	NA	NA	NA
SQF12024.1|383349_383526_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12025.1|383611_383839_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12026.1|384739_384970_+|bacteriocin	bacteriocin class II with double-glycine leader peptide	bacteriocin	NA	NA	NA	NA
SQF12027.1|385018_385336_+	role in replication	NA	NA	NA	NA	NA
SQF12028.1|386325_386541_+	Transposase	NA	U5P429	Shigella_phage	45.5	7.0e-10
SQF12029.1|386754_387366_+|transposase	truncated transposase	transposase	A0A1X9I5T2	Streptococcus_phage	96.6	4.6e-99
SQF12030.1|387316_388249_+|transposase	ISSag8, transposase	transposase	A0A1X9I5T2	Streptococcus_phage	88.8	2.3e-142
>prophage 4
LS483332	Streptococcus pyogenes strain NCTC12696 genome assembly, chromosome: 1	1845052	394897	424170	1845052	tRNA,transposase,bacteriocin	Bacillus_phage(14.29%)	33	NA	NA
SQF12036.1|394897_395320_+|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
SQF12037.1|395316_395466_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQF12038.1|395771_396017_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF12039.1|396031_396214_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF12040.1|396522_396672_-|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQF12041.1|396668_397091_-|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
SQF12042.1|397408_397636_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQF12043.1|397648_397849_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF12044.1|398387_398669_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12045.1|398862_399264_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12046.1|399517_400585_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12047.1|400629_401076_+	histidine kinase	NA	NA	NA	NA	NA
SQF12048.1|401423_401693_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12049.1|402763_403630_+	transcriptional regulator	NA	NA	NA	NA	NA
SQF12050.1|403801_404629_+	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	5.1e-16
SQF12051.1|404625_405219_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQF12052.1|405408_406911_+	ATPase	NA	A0A248XCZ8	Klebsiella_phage	41.2	6.7e-75
SQF12053.1|407056_408226_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF12054.1|408414_408651_+	preprotein translocase subunit	NA	NA	NA	NA	NA
SQF12055.1|408747_411078_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.8	8.8e-90
SQF12056.1|411080_411548_+	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	57.0	5.7e-41
SQF12057.1|411553_412273_+	glutamine cyclotransferase	NA	NA	NA	NA	NA
SQF12058.1|412389_413037_-	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQF12059.1|413086_414013_-	membrane protein	NA	NA	NA	NA	NA
SQF12060.1|414012_414696_-	membrane protein	NA	NA	NA	NA	NA
SQF12061.1|414906_415833_-	glucosyl transferase family 2	NA	V5USA4	Oenococcus_phage	47.5	3.4e-77
SQF12062.1|415977_416355_-	bleomycin resistance protein	NA	NA	NA	NA	NA
SQF12063.1|416365_417031_-	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA	NA
SQF12064.1|417079_418165_-	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQF12065.1|418338_419340_+	Catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
SQF12066.1|419470_420469_+	glycosyltransferase	NA	NA	NA	NA	NA
SQF12067.1|420470_421805_+	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
SQF12068.1|422226_424170_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.7	1.0e-120
>prophage 5
LS483332	Streptococcus pyogenes strain NCTC12696 genome assembly, chromosome: 1	1845052	454242	492451	1845052	tRNA,transposase,portal	Streptococcus_phage(25.0%)	39	NA	NA
SQF12100.1|454242_454695_+|portal	portal protein	portal	E4ZFM3	Streptococcus_phage	84.9	5.7e-62
SQF12101.1|454760_455069_+	prophage minor structural protein	NA	Q6DMT0	Streptococcus_phage	64.9	5.7e-21
SQF12102.1|455486_456473_+	huntington interacting protein HYPE	NA	D7RWK9	Brochothrix_phage	24.4	3.2e-09
SQF12103.1|456843_457173_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF12104.1|457315_457690_+|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQF12105.1|457788_458085_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF12106.1|458068_458857_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF12107.1|459014_460229_+	putative transporter	NA	NA	NA	NA	NA
SQF12108.1|460230_461112_+	methyltransferase	NA	NA	NA	NA	NA
SQF12109.1|461101_462103_+	asparagine ligase A	NA	M1PB22	Moumouvirus	33.5	5.2e-23
SQF12110.1|462116_463364_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
SQF12111.1|463591_464308_+	microcin C7 self-immunity protein	NA	NA	NA	NA	NA
SQF12112.1|464320_465532_+|tRNA	histidyl-tRNA synthetase protein HisS	tRNA	NA	NA	NA	NA
SQF12113.1|465904_466261_-	Mobile element protein	NA	U5P429	Shigella_phage	32.8	3.6e-11
SQF12114.1|466754_467030_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF12115.1|467333_468131_+	cof-like hydrolase family protein	NA	NA	NA	NA	NA
SQF12116.1|468134_468959_+	cof-like hydrolase family protein	NA	NA	NA	NA	NA
SQF12117.1|468958_470509_+	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
SQF12118.1|470562_471930_-	multidrug resistance protein B	NA	NA	NA	NA	NA
SQF12119.1|472257_473100_+	Cryptic beta-glucoside bgl operon antiterminator	NA	NA	NA	NA	NA
SQF12120.1|473101_474964_+	PTS system protein	NA	NA	NA	NA	NA
SQF12121.1|474982_476407_+	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
SQF12122.1|476505_477321_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF12123.1|477320_478223_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF12124.1|478366_478531_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQF12125.1|478764_480897_+	transcription accessory protein	NA	NA	NA	NA	NA
SQF12126.1|481384_481657_+	membrane protein	NA	NA	NA	NA	NA
SQF12127.1|482021_482954_+	phosphorylase	NA	NA	NA	NA	NA
SQF12128.1|482950_483730_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
SQF12129.1|483751_484159_+	General stress protein	NA	NA	NA	NA	NA
SQF12130.1|484151_484580_+	gas vesicle protein	NA	NA	NA	NA	NA
SQF12131.1|484739_485024_-	membrane protein	NA	NA	NA	NA	NA
SQF12132.1|485222_486149_+	peptidase	NA	NA	NA	NA	NA
SQF12133.1|486259_487537_+	peptidase, U32 family	NA	Q6DW11	Phage_TP	31.6	7.1e-41
SQF12134.1|487745_487958_+|tRNA	seryl-tRNA synthetase	tRNA	A0A223LEC3	Bacillus_phage	46.9	9.0e-10
SQF12135.1|488330_489824_-|tRNA	lysyl-tRNA synthetase	tRNA	A0A1V0SAC0	Catovirus	40.7	3.3e-90
SQF12136.1|489997_490900_+	putative hydrolase of the HAD superfamily	NA	NA	NA	NA	NA
SQF12137.1|491007_491631_-	phosphoglycerate mutase family protein	NA	NA	NA	NA	NA
SQF12138.1|491971_492451_-|tRNA	ybaK / prolyl-tRNA synthetases associated domain-containing protein	tRNA	NA	NA	NA	NA
>prophage 6
LS483332	Streptococcus pyogenes strain NCTC12696 genome assembly, chromosome: 1	1845052	622263	632867	1845052		Streptococcus_phage(57.14%)	9	NA	NA
SQF12252.1|622263_624474_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.2	2.9e-268
SQF12253.1|624581_625745_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	64.9	7.6e-143
SQF12254.1|625741_626428_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF12255.1|626521_627688_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF12256.1|627748_628090_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	5.9e-19
SQF12257.1|628310_629663_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.8	1.0e-29
SQF12258.1|629742_631020_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF12259.1|631049_631490_-	membrane protein	NA	NA	NA	NA	NA
SQF12260.1|631724_632867_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.0	4.1e-24
>prophage 7
LS483332	Streptococcus pyogenes strain NCTC12696 genome assembly, chromosome: 1	1845052	659832	693848	1845052	head,tRNA,transposase,protease	Bacillus_phage(27.27%)	33	NA	NA
SQF12285.1|659832_660564_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQF12286.1|660563_661556_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
SQF12287.1|661725_662859_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF12288.1|662863_662968_+	hupothetical protein	NA	NA	NA	NA	NA
SQF12289.1|663058_664117_+	regulatory protein	NA	NA	NA	NA	NA
SQF12290.1|664129_665053_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQF12291.1|665353_666022_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.7	2.8e-17
SQF12292.1|666018_666930_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQF12293.1|666926_668873_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQF12294.1|668971_669565_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.5e-11
SQF12295.1|669716_670424_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	1.9e-11
SQF12296.1|670579_670699_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQF12297.1|671380_672406_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQF12298.1|672908_673085_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF12299.1|673313_673694_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF12300.1|673693_674542_+	degV family protein	NA	NA	NA	NA	NA
SQF12301.1|674666_675875_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	5.3e-38
SQF12302.1|675871_677749_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.7	3.9e-64
SQF12303.1|678638_679049_+	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF12304.1|679130_681143_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQF12305.1|681362_682013_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF12306.1|682015_682684_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF12307.1|682692_683925_+	two component system histidine kinase	NA	NA	NA	NA	NA
SQF12308.1|684218_685097_+	mevalonate kinase	NA	NA	NA	NA	NA
SQF12309.1|685078_686023_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF12310.1|686015_687023_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF12311.1|687015_688005_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF12312.1|688234_689512_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF12313.1|689498_690674_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF12314.1|690882_691722_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQF12315.1|691801_692299_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQF12316.1|692318_692489_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF12317.1|692618_693848_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	3.0e-137
>prophage 8
LS483332	Streptococcus pyogenes strain NCTC12696 genome assembly, chromosome: 1	1845052	978910	1006516	1845052	integrase,transposase	Staphylococcus_prophage(20.0%)	29	979188:979203	1014078:1014093
SQF12585.1|978910_979162_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF12586.1|979103_979691_+|transposase	truncated transposase	transposase	Q9MBM9	Staphylococcus_prophage	39.6	5.4e-28
979188:979203	attL	AGTATCAGAAAACGTT	NA	NA	NA	NA
SQF12587.1|980204_981188_-	alpha/beta fold family hydrolase	NA	NA	NA	NA	NA
SQF12588.1|981218_982469_-	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA	NA
SQF12589.1|982461_982701_-	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
SQF12590.1|982718_983975_-	Protein dltB	NA	NA	NA	NA	NA
SQF12591.1|983971_985510_-	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	28.0	1.9e-40
SQF12592.1|985521_985665_-	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA	NA
SQF12593.1|985928_987920_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
SQF12594.1|988112_990287_+	glutamine-binding protein/glutamine transpor tsystem permease protein	NA	NA	NA	NA	NA
SQF12595.1|990286_991027_+	glutamine transport ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	42.1	1.5e-35
SQF12596.1|991174_991327_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12597.1|991323_992703_-	PTS system cellobiose-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQF12598.1|992880_993330_-	Domain of uncharacterised function (DUF3284)	NA	NA	NA	NA	NA
SQF12599.1|993326_993662_-	PTS system cellobiose-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQF12600.1|993664_993976_-	PTS system cellobiose-specific component IIB	NA	NA	NA	NA	NA
SQF12601.1|993998_995993_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQF12602.1|996098_997193_-	outer surface protein	NA	NA	NA	NA	NA
SQF12603.1|997201_998602_-	beta-glucosidase	NA	NA	NA	NA	NA
SQF12604.1|998826_999522_+	nicotinamide mononucleotide transporter	NA	NA	NA	NA	NA
SQF12605.1|999526_999685_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF12606.1|999753_1001067_-	GTPase ObgE	NA	NA	NA	NA	NA
SQF12607.1|1001124_1001253_-	membrane protein	NA	NA	NA	NA	NA
SQF12608.1|1001494_1002010_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF12609.1|1002030_1002837_+|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	49.3	1.2e-62
SQF12610.1|1003136_1004009_-	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQF12611.1|1004232_1005543_+	membrane protein	NA	NA	NA	NA	NA
SQF12612.1|1005620_1005914_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF12613.1|1006345_1006516_+|integrase	integrase	integrase	U5P429	Shigella_phage	46.3	1.1e-07
1014078:1014093	attR	AACGTTTTCTGATACT	NA	NA	NA	NA
>prophage 9
LS483332	Streptococcus pyogenes strain NCTC12696 genome assembly, chromosome: 1	1845052	1045595	1136135	1845052	holin,capsid,protease,portal,transposase,terminase,tail,integrase,tRNA	Streptococcus_phage(60.0%)	109	1089255:1089274	1133520:1133539
SQF12647.1|1045595_1045889_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF12648.1|1045921_1046377_+|transposase	transposase	transposase	U5P429	Shigella_phage	35.5	4.0e-15
SQF12649.1|1046531_1046753_+|transposase	transposase	transposase	U5P429	Shigella_phage	42.9	9.4e-10
SQF12650.1|1046844_1047540_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF12651.1|1047558_1048320_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF12652.1|1048316_1048532_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQF12653.1|1048892_1051511_-|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	34.1	1.1e-61
SQF12654.1|1051992_1053126_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF12655.1|1053223_1054279_-	foldase protein prsA 1	NA	NA	NA	NA	NA
SQF12656.1|1054341_1055013_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	2.4e-08
SQF12657.1|1055114_1056311_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF12658.1|1056686_1058492_-	oligoendopeptidase F	NA	NA	NA	NA	NA
SQF12659.1|1058504_1059467_-	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQF12660.1|1059762_1060479_-	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQF12661.1|1060597_1061302_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQF12662.1|1061503_1062532_+|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQF12663.1|1062571_1063759_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF12664.1|1063872_1064463_-	S11 family peptidase	NA	NA	NA	NA	NA
SQF12665.1|1064687_1064921_-	beta-lactamase	NA	NA	NA	NA	NA
SQF12666.1|1065087_1065693_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.2	1.8e-58
SQF12667.1|1065789_1066830_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SQF12668.1|1066900_1069144_-	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.2	1.8e-55
SQF12669.1|1069124_1069787_-	comE operon 1 domain-containing protein	NA	NA	NA	NA	NA
SQF12670.1|1069986_1070727_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF12671.1|1070766_1071621_+	methyltransferase	NA	NA	NA	NA	NA
SQF12672.1|1071610_1071889_+	GIY-YIG catalytic domain-containing protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	7.9e-06
SQF12673.1|1071912_1073913_-	Kup system potassium uptake protein	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	33.8	3.8e-65
SQF12674.1|1074039_1075659_-	DEAD-box ATP-dependent RNA helicase CshA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	1.9e-59
SQF12675.1|1075965_1077510_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.3	4.8e-36
SQF12676.1|1077747_1078443_-	integral membrane family protein	NA	NA	NA	NA	NA
SQF12677.1|1078522_1079914_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
SQF12678.1|1080104_1081151_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SQF12679.1|1081251_1081848_-	recombination protein	NA	NA	NA	NA	NA
SQF12680.1|1082646_1083426_-	formate transporter	NA	NA	NA	NA	NA
SQF12681.1|1083549_1084092_-	membrane protein	NA	NA	NA	NA	NA
SQF12682.1|1084252_1084774_-	3H domain-containing protein	NA	NA	NA	NA	NA
SQF12683.1|1084881_1085577_-	phosphoglyceromutase	NA	NA	NA	NA	NA
SQF12684.1|1085815_1086751_+	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	45.1	4.6e-66
SQF12685.1|1087050_1088913_-	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	33.8	5.4e-90
1089255:1089274	attL	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQF12686.1|1089443_1089626_-	paratox	NA	A3F673	Streptococcus_phage	76.7	1.4e-19
SQF12687.1|1089690_1089978_-	phage membrane protein	NA	Q938I9	Temperate_phage	100.0	2.4e-29
SQF12688.1|1089971_1090547_-	phospholipase A2 SlaA	NA	Q938J0	Temperate_phage	100.0	1.7e-111
SQF12689.1|1091022_1091802_-	Exotoxin type C precursor	NA	Q938J1	Temperate_phage	99.6	1.6e-144
SQF12690.1|1092105_1092972_-	phage protein	NA	Q938J2	Temperate_phage	100.0	3.7e-134
SQF12691.1|1092959_1093484_-	phage protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
SQF12692.1|1093623_1094832_-	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	86.8	8.6e-214
SQF12693.1|1094828_1094939_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	86.1	1.9e-08
SQF12694.1|1094947_1095175_-	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQF12695.1|1095171_1095447_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQF12696.1|1095456_1096095_-	phage protein	NA	A3F662	Streptococcus_phage	53.7	1.2e-44
SQF12697.1|1096097_1096526_-	phage protein	NA	A3F661	Streptococcus_phage	86.5	1.7e-63
SQF12698.1|1096537_1098424_-	gp58-like family protein	NA	Q938J9	Temperate_phage	86.5	1.3e-203
SQF12699.1|1098436_1099459_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	91.7	1.2e-168
SQF12700.1|1099455_1101600_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	93.3	0.0e+00
SQF12701.1|1101596_1102304_-	phage protein	NA	Q938K2	Temperate_phage	71.1	1.7e-92
SQF12702.1|1102303_1106227_-|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	48.7	1.9e-238
SQF12703.1|1106239_1106407_-	phage protein	NA	J7KBS0	Streptococcus_phage	87.3	2.9e-19
SQF12704.1|1106436_1106763_-	phage protein	NA	J7KK85	Streptococcus_phage	73.1	6.0e-37
SQF12705.1|1106815_1107424_-|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	70.5	2.3e-74
SQF12706.1|1107440_1107866_-	phage protein	NA	J7KBZ9	Streptococcus_phage	85.1	5.0e-68
SQF12707.1|1107862_1108240_-	phage protein	NA	J7KDM3	Streptococcus_phage	72.8	1.4e-45
SQF12708.1|1108236_1108584_-	phage protein	NA	J7KJ42	Streptococcus_phage	85.5	1.5e-49
SQF12709.1|1108580_1108883_-	phage protein	NA	J7KC36	Streptococcus_phage	87.0	6.1e-44
SQF12710.1|1109018_1110221_-|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	64.4	6.0e-135
SQF12711.1|1110246_1110912_-|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	77.7	4.6e-92
SQF12712.1|1110889_1112110_-|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.7	2.0e-186
SQF12713.1|1112143_1112368_-	phage protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
SQF12714.1|1112360_1112531_-	phage protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
SQF12715.1|1112527_1114282_-|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	96.2	0.0e+00
SQF12716.1|1114296_1114764_-|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
SQF12717.1|1114934_1115273_-	Phage endonuclease	NA	J7KH36	Streptococcus_phage	90.7	3.0e-55
SQF12718.1|1115857_1116298_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	99.3	1.9e-78
SQF12719.1|1116573_1116945_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12720.1|1116941_1117652_-	phage protein	NA	Q938L9	Temperate_phage	46.2	3.0e-25
SQF12721.1|1117654_1118287_-	phage protein	NA	L0P368	Streptococcus_phage	68.6	2.3e-85
SQF12722.1|1118288_1118573_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	89.4	1.4e-37
SQF12723.1|1118569_1118974_-	phage protein	NA	A3F627	Streptococcus_phage	65.2	1.6e-39
SQF12724.1|1118983_1119253_-	phage protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
SQF12725.1|1119249_1119534_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	96.8	2.2e-48
SQF12726.1|1119579_1119768_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	97.8	5.0e-20
SQF12727.1|1119764_1119923_-	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	96.2	4.2e-20
SQF12728.1|1120105_1120426_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	94.3	7.1e-51
SQF12729.1|1120422_1120836_-	phage protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	50.0	2.8e-15
SQF12730.1|1121097_1122573_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	86.7	2.9e-248
SQF12731.1|1122562_1123366_-	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	97.4	1.5e-150
SQF12732.1|1123377_1123836_-	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	99.3	5.0e-82
SQF12733.1|1123851_1125081_-	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	100.0	3.3e-237
SQF12734.1|1125182_1125863_-	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQF12735.1|1125863_1126346_-	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
SQF12736.1|1126493_1126808_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	94.2	1.3e-49
SQF12737.1|1126823_1126958_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	95.5	9.6e-18
SQF12738.1|1126959_1127271_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.6	1.4e-43
SQF12739.1|1127348_1127534_-	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQF12740.1|1127700_1127940_+	phage protein	NA	NA	NA	NA	NA
SQF12741.1|1128090_1128300_+	phage protein	NA	NA	NA	NA	NA
SQF12742.1|1128258_1128504_-	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
SQF12743.1|1128552_1129359_+	protein Ymh	NA	A0A1S5SBU1	Streptococcus_phage	82.1	7.9e-123
SQF12744.1|1129293_1129560_-	phage protein	NA	A0A1S5SC19	Streptococcus_phage	66.3	1.1e-23
SQF12745.1|1129570_1129810_-	Cro/CI family phage transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	98.7	1.4e-35
SQF12746.1|1129903_1130503_+	phage protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
SQF12747.1|1130532_1130691_-	phage protein	NA	A0A097PAP2	Streptococcus_pyogenes_phage	100.0	4.8e-24
SQF12748.1|1130787_1130889_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12749.1|1131063_1131852_+	Phage transcriptional repressor	NA	A0A1S5SD15	Streptococcus_phage	63.0	2.0e-86
SQF12750.1|1131861_1132167_+	phage membrane protein	NA	NA	NA	NA	NA
SQF12751.1|1132289_1133432_+|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
SQF12752.1|1133521_1133797_-	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
1133520:1133539	attR	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQF12753.1|1133895_1134483_-	membrane protein	NA	NA	NA	NA	NA
SQF12754.1|1134460_1135321_-	GDSL family lipase	NA	NA	NA	NA	NA
SQF12755.1|1135295_1136135_-	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
>prophage 10
LS483332	Streptococcus pyogenes strain NCTC12696 genome assembly, chromosome: 1	1845052	1255874	1318831	1845052	capsid,portal,terminase,tail,integrase,tRNA	Streptococcus_phage(77.59%)	81	1272728:1272743	1318860:1318875
SQF12855.1|1255874_1256810_-|tRNA	methionyl-tRNA formyltransferase	tRNA	M4QRX9	Synechococcus_phage	38.5	6.0e-05
SQF12856.1|1256871_1259256_-	primosome assembly protein	NA	NA	NA	NA	NA
SQF12857.1|1259320_1259638_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
SQF12858.1|1259653_1260289_-	guanylate kinase	NA	S4VT50	Pandoravirus	45.3	4.9e-11
SQF12859.1|1260398_1262006_-	phosphohydrolase	NA	NA	NA	NA	NA
SQF12860.1|1262135_1263032_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	21.9	2.1e-07
SQF12861.1|1263226_1264414_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
SQF12862.1|1264437_1265088_+	acetyl-CoA:acetoacetyl-CoA transferase subunit alpha	NA	NA	NA	NA	NA
SQF12863.1|1265089_1265749_+	acetate CoA-transferase subunit beta	NA	NA	NA	NA	NA
SQF12864.1|1265781_1266561_+	D(-)-3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
SQF12865.1|1266631_1267963_+	gntP permease family protein	NA	NA	NA	NA	NA
SQF12866.1|1268036_1268519_+	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
SQF12867.1|1268663_1270133_-	holliday junction-specific endonuclease	NA	NA	NA	NA	NA
SQF12868.1|1270146_1271301_-	N6-adenine-specific DNA methylase	NA	NA	NA	NA	NA
SQF12869.1|1271745_1272072_-	cell division initiation protein	NA	NA	NA	NA	NA
SQF12870.1|1272193_1272709_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
1272728:1272743	attL	AAAATATGTTATAATA	NA	NA	NA	NA
SQF12871.1|1272789_1273398_+	recombination protein U	NA	A0A1C8E9C3	Bacillus_phage	33.9	3.2e-23
SQF12872.1|1273384_1275550_+	penicillin-binding protein 1A	NA	NA	NA	NA	NA
SQF12873.1|1275761_1275851_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12874.1|1275793_1275976_-	phage protein	NA	J7KBZ4	Streptococcus_phage	74.6	1.9e-16
SQF12875.1|1276196_1276952_+	exotoxin type A	NA	A0A097PAT7	Streptococcus_pyogenes_phage	100.0	2.2e-143
SQF12876.1|1277073_1278291_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8VVM5	Streptococcus_phage	59.5	2.6e-162
SQF12877.1|1278284_1278401_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.1	7.0e-09
SQF12878.1|1278409_1278637_-	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQF12879.1|1278633_1278906_-	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQF12880.1|1278917_1279550_-	phage protein	NA	Q938J7	Temperate_phage	50.0	2.6e-44
SQF12881.1|1279552_1279981_-	phage protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
SQF12882.1|1279992_1281897_-	Phage infection protein	NA	Q938J9	Temperate_phage	83.7	1.1e-210
SQF12883.1|1281906_1282914_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	64.9	9.9e-115
SQF12884.1|1282910_1284962_-	phage protein	NA	A3F656	Streptococcus_phage	84.6	0.0e+00
SQF12885.1|1284958_1285729_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	87.5	2.1e-128
SQF12886.1|1285741_1289842_-|tail	tail protein	tail	A3F654	Streptococcus_phage	66.3	0.0e+00
SQF12887.1|1290067_1290370_-	Uncharacterised protein	NA	A3F652	Streptococcus_phage	96.0	1.8e-48
SQF12888.1|1290462_1291047_-|tail	major tail protein - phage associated	tail	A3F651	Streptococcus_phage	90.2	3.1e-92
SQF12889.1|1291058_1291439_-	Uncharacterised protein	NA	A3F650	Streptococcus_phage	99.2	7.4e-63
SQF12890.1|1291431_1291830_-	Uncharacterised protein	NA	A3F649	Streptococcus_phage	100.0	2.9e-70
SQF12891.1|1291831_1292194_-	Uncharacterised protein	NA	A3F648	Streptococcus_phage	97.5	1.1e-60
SQF12892.1|1292186_1292495_-	Uncharacterised protein	NA	A3F647	Streptococcus_phage	99.0	1.2e-47
SQF12893.1|1292494_1292668_-	Uncharacterised protein	NA	A3F646	Streptococcus_phage	94.7	6.4e-22
SQF12894.1|1292681_1293815_-|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A3F645	Streptococcus_phage	96.8	3.2e-202
SQF12895.1|1293831_1294638_-	scaffolding protein	NA	A3F644	Streptococcus_phage	97.8	6.0e-147
SQF12896.1|1294618_1295806_-|portal	HK97 family phage portal protein	portal	A3F643	Streptococcus_phage	96.2	5.6e-218
SQF12897.1|1295958_1296171_-	Uncharacterised protein	NA	A3F642	Streptococcus_phage	95.7	4.0e-34
SQF12898.1|1296173_1297904_-|terminase	putative phage terminase, large subunit	terminase	A3F641	Streptococcus_phage	97.0	0.0e+00
SQF12899.1|1297916_1298234_-	Uncharacterised protein	NA	A3F640	Streptococcus_phage	99.0	3.9e-49
SQF12900.1|1298374_1298680_-	HNH endonuclease	NA	A3F639	Streptococcus_phage	96.0	3.8e-54
SQF12901.1|1298672_1299059_-	Uncharacterised protein	NA	A3F638	Streptococcus_phage	93.0	1.4e-64
SQF12902.1|1299084_1299288_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12903.1|1299345_1299639_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12904.1|1299792_1300368_-	phage associated recombinase	NA	A3F636	Streptococcus_phage	99.5	7.4e-107
SQF12905.1|1300527_1300929_-	phage 31 late promoter transcriptional activator	NA	A3F635	Streptococcus_phage	100.0	2.7e-71
SQF12906.1|1300943_1301771_-	B-cell receptor associated protein-like protein	NA	A3F634	Streptococcus_phage	100.0	1.3e-117
SQF12907.1|1301773_1302112_-	immunity repressor protein - phage associated	NA	A3F633	Streptococcus_phage	92.9	1.1e-54
SQF12908.1|1302108_1302390_-	Uncharacterised protein	NA	A3F632	Streptococcus_phage	92.2	4.5e-33
SQF12909.1|1302404_1302797_-	single strand binding protein	NA	A0A1P8VVS8	Streptococcus_phage	70.3	6.9e-48
SQF12910.1|1302793_1303015_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12911.1|1303011_1303497_-	phage protein	NA	A0A1S5S9L5	Streptococcus_phage	41.4	5.6e-23
SQF12912.1|1303501_1304134_-	phage protein	NA	L0P368	Streptococcus_phage	65.7	5.9e-81
SQF12913.1|1304135_1304405_-	phage membrane protein	NA	A7J287	Streptococcus_phage	80.9	1.4e-28
SQF12914.1|1304401_1304572_-	phage protein	NA	Q938M0	Temperate_phage	55.4	2.7e-09
SQF12915.1|1304568_1305012_-	phage protein	NA	A0A1C9LX52	Streptococcus_phage	55.0	1.6e-32
SQF12916.1|1305028_1305178_-	phage protein	NA	NA	NA	NA	NA
SQF12917.1|1305167_1305395_-	phage protein	NA	C5J991	Streptococcus_phage	49.3	9.3e-13
SQF12918.1|1305394_1306207_-	phage DNA replication protein	NA	A0A1P8VVV9	Streptococcus_phage	77.6	6.8e-122
SQF12919.1|1306206_1306968_-	dnaD and phage-associated domain protein	NA	A0A220GFI5	Streptococcus_phage	56.1	9.1e-28
SQF12920.1|1306960_1308301_-	DNA polymerase III delta prime subunit	NA	A0A1P8VVQ6	Streptococcus_phage	84.7	7.1e-209
SQF12921.1|1308287_1308476_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12922.1|1308596_1308788_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12923.1|1308880_1309138_-	phage protein	NA	A3F618	Streptococcus_phage	98.8	5.4e-41
SQF12924.1|1309211_1309931_-	antirepressor - phage associated	NA	A3F617	Streptococcus_phage	78.7	4.6e-106
SQF12925.1|1309982_1310483_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12926.1|1310602_1310737_-	Uncharacterised protein	NA	A3F616	Streptococcus_phage	95.5	2.4e-16
SQF12927.1|1310810_1311023_-	phage protein	NA	M1Q1B4	Streptococcus_phage	52.9	1.7e-13
SQF12928.1|1311057_1311333_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF12929.1|1311621_1311972_+	repressor - phage associated	NA	A0A1S5SAD3	Streptococcus_phage	63.5	1.2e-35
SQF12930.1|1311975_1312368_+	phage protein	NA	A3F612	Streptococcus_phage	68.7	2.2e-38
SQF12931.1|1312378_1313119_+	phage protein	NA	A3F611	Streptococcus_phage	100.0	1.6e-130
SQF12932.1|1313429_1314626_+|integrase	phage associated integrase	integrase	A3F610	Streptococcus_phage	99.0	3.9e-227
SQF12933.1|1315028_1316366_-	aminopeptidase C	NA	R4TV59	Phaeocystis_globosa_virus	37.0	1.4e-68
SQF12934.1|1316550_1317375_-	NAD synthetase	NA	G3MA24	Bacillus_virus	58.2	5.3e-74
SQF12935.1|1317376_1318831_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	41.8	7.2e-98
1318860:1318875	attR	TATTATAACATATTTT	NA	NA	NA	NA
>prophage 11
LS483332	Streptococcus pyogenes strain NCTC12696 genome assembly, chromosome: 1	1845052	1470471	1540633	1845052	holin,portal,head,terminase,tail,integrase,tRNA	Streptococcus_phage(32.86%)	101	1494909:1494924	1545169:1545184
SQF13083.1|1470471_1470780_-|tRNA	seryl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQF13084.1|1470936_1471839_+	ribonuclease HIII	NA	NA	NA	NA	NA
SQF13085.1|1471849_1472443_+	signal peptidase I	NA	NA	NA	NA	NA
SQF13086.1|1472500_1474954_+	Exodeoxyribonuclease V alpha chain	NA	U5J9B0	Bacillus_phage	28.5	7.2e-58
SQF13087.1|1475044_1475527_+	membrane protein	NA	NA	NA	NA	NA
SQF13088.1|1475619_1476714_-	DNA polymerase IV	NA	NA	NA	NA	NA
SQF13089.1|1476923_1479251_+	pyruvate formate-lyase	NA	A0A2P0VNR5	Tetraselmis_virus	33.4	4.2e-116
SQF13090.1|1479430_1480369_-	beta-lactamase family protein	NA	NA	NA	NA	NA
SQF13091.1|1480365_1481118_-	C3-degrading proteinase	NA	NA	NA	NA	NA
SQF13092.1|1481415_1482312_+	sodium:solute symporter	NA	NA	NA	NA	NA
SQF13093.1|1482646_1483495_-	glycerol uptake permease	NA	M1HJ75	Acanthocystis_turfacea_Chlorella_virus	31.6	1.2e-23
SQF13094.1|1483996_1485193_-	quinolone MFS transporter	NA	NA	NA	NA	NA
SQF13095.1|1485298_1486018_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
SQF13096.1|1486039_1488322_+	xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
SQF13097.1|1488401_1488623_-	helix-turn-helix family protein	NA	A0A1W6JP54	Staphylococcus_phage	41.2	4.8e-06
SQF13098.1|1488792_1489167_+	Transcriptional regulator	NA	A0A097BY95	Leuconostoc_phage	51.6	2.7e-17
SQF13099.1|1489511_1489691_-	Paratox	NA	A3F673	Streptococcus_phage	75.9	6.4e-17
SQF13100.1|1489928_1490729_+	streptodornase	NA	NA	NA	NA	NA
SQF13101.1|1491108_1491435_+	phage membrane protein	NA	NA	NA	NA	NA
SQF13102.1|1491484_1492351_-	phage protein	NA	Q938J2	Temperate_phage	99.7	1.1e-133
SQF13103.1|1492338_1492863_-	phage protein	NA	Q938J3	Temperate_phage	99.4	1.2e-98
SQF13104.1|1493002_1494211_-	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	85.6	1.5e-210
SQF13105.1|1494207_1494318_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.2	1.8e-09
SQF13106.1|1494326_1494554_-|holin	prophage LambdaSa03, holin	holin	A7J2B3	Streptococcus_phage	98.7	7.6e-31
SQF13107.1|1494550_1494826_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQF13108.1|1494835_1495453_-	phage protein	NA	Q938J7	Temperate_phage	86.3	1.0e-74
1494909:1494924	attL	TGTTTGTCATACTCAA	NA	NA	NA	NA
SQF13109.1|1495455_1495617_-	phage protein	NA	NA	NA	NA	NA
SQF13110.1|1495630_1497541_-	phage protein	NA	Q938J9	Temperate_phage	71.0	2.5e-119
SQF13111.1|1497556_1498561_-	hyaluronidase	NA	Q938K0	Temperate_phage	60.3	1.9e-102
SQF13112.1|1498557_1500609_-	phage protein	NA	A3F656	Streptococcus_phage	85.2	0.0e+00
SQF13113.1|1500605_1501385_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.8	1.7e-66
SQF13114.1|1501417_1505053_-	tape measure domain protein	NA	U6E979	Streptococcus_phage	28.0	4.0e-04
SQF13115.1|1505067_1505397_-	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	40.6	5.7e-11
SQF13116.1|1505438_1505792_-	phage protein	NA	Q77RZ7	Lactococcus_phage	48.6	5.5e-20
SQF13117.1|1505844_1506498_-|tail	phage major tail protein	tail	D7RWD5	Brochothrix_phage	52.2	7.3e-42
SQF13118.1|1506507_1506897_-	phage protein	NA	Q8LTQ5	Lactococcus_phage	69.8	2.2e-46
SQF13119.1|1506893_1507259_-	phage protein	NA	A0A097BY98	Enterococcus_phage	47.9	3.1e-18
SQF13120.1|1507239_1507548_-	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
SQF13121.1|1507544_1507898_-	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
SQF13122.1|1507911_1508154_-	phage protein	NA	NA	NA	NA	NA
SQF13123.1|1508163_1509240_-|head	phage head protein	head	A0A2H4J022	uncultured_Caudovirales_phage	56.0	5.5e-103
SQF13124.1|1509239_1509620_-	phage protein	NA	A0A0K2CNR0	Brevibacillus_phage	33.3	4.1e-05
SQF13125.1|1509629_1510163_-	phage protein	NA	A0A141E0S7	Streptococcus_phage	84.2	1.2e-15
SQF13126.1|1510306_1510573_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	71.6	6.6e-26
SQF13127.1|1510575_1510890_-	phage protein	NA	M1PLI3	Streptococcus_phage	72.8	6.8e-38
SQF13128.1|1510959_1511145_-	phage protein	NA	NA	NA	NA	NA
SQF13129.1|1511148_1512711_-	phage protein	NA	U6E9F1	Streptococcus_phage	44.2	3.3e-48
SQF13130.1|1512691_1514194_-|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
SQF13131.1|1514205_1515495_-|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	74.9	1.7e-183
SQF13132.1|1515472_1515955_-|terminase	phage terminase small subunit	terminase	E0Y3R8	Staphylococcus_virus	40.3	3.3e-15
SQF13133.1|1516786_1517227_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	100.0	5.0e-79
SQF13134.1|1517499_1517670_-	phage protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	96.3	3.5e-25
SQF13135.1|1517666_1518188_-	phage protein	NA	Q938L9	Temperate_phage	76.3	5.6e-69
SQF13136.1|1518184_1518478_-	phage protein	NA	A0A097PAR1	Streptococcus_pyogenes_phage	97.9	8.0e-49
SQF13137.1|1518474_1518660_-	phage protein	NA	A0A097PBF0	Streptococcus_pyogenes_phage	100.0	7.0e-27
SQF13138.1|1518757_1519243_-	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	99.4	3.6e-94
SQF13139.1|1519246_1519531_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	91.5	5.0e-40
SQF13140.1|1519527_1519932_-	phage protein	NA	Q938M1	Temperate_phage	94.0	3.4e-66
SQF13141.1|1519915_1520203_-	phage protein	NA	J7KDH9	Streptococcus_phage	75.0	5.1e-32
SQF13142.1|1520202_1520448_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	98.8	6.7e-41
SQF13143.1|1520444_1520801_-	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	98.3	5.5e-60
SQF13144.1|1520797_1521238_-	phage protein	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.9	4.5e-80
SQF13145.1|1521446_1521872_-	single-stranded DNA-binding protein ssb	NA	A0A097PAQ3	Streptococcus_pyogenes_phage	82.3	2.8e-55
SQF13146.1|1521864_1522539_-	Recombination protein	NA	A0A097PBE8	Streptococcus_pyogenes_phage	99.1	7.6e-119
SQF13147.1|1522539_1523022_-	phage protein	NA	Q938M9	Temperate_phage	100.0	8.2e-51
SQF13148.1|1523043_1523298_-	phage protein	NA	Q938N0	Temperate_phage	96.4	1.8e-41
SQF13149.1|1523284_1523632_-	phage protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	47.7	4.6e-11
SQF13150.1|1523644_1523782_-	phage protein	NA	J7KBQ4	Streptococcus_phage	78.4	2.7e-07
SQF13151.1|1523772_1524555_-	DNA replication protein DnaC	NA	A0A097PAQ0	Streptococcus_pyogenes_phage	98.1	2.7e-144
SQF13152.1|1524541_1525345_-	DNA replication protein DnaC	NA	A0A2P0VI76	Streptococcus_phage	53.8	2.4e-63
SQF13153.1|1525460_1525904_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF13154.1|1525959_1526340_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF13155.1|1526329_1526602_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF13156.1|1526774_1526954_-	Uncharacterised protein	NA	A0A1X9I5M8	Streptococcus_phage	65.5	1.2e-12
SQF13157.1|1527084_1527219_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	95.5	9.6e-18
SQF13158.1|1527366_1527480_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF13159.1|1527500_1527860_-	Uncharacterised protein	NA	Q9AZZ9	Lactococcus_phage	50.0	2.2e-08
SQF13160.1|1527933_1528191_-	Uncharacterised protein	NA	X2KPF2	Streptococcus_phage	36.8	3.3e-06
SQF13161.1|1528393_1528735_-	phage protein	NA	NA	NA	NA	NA
SQF13162.1|1528809_1529010_+	phage protein	NA	A0A1S5S8T9	Streptococcus_phage	75.4	3.3e-22
SQF13163.1|1529006_1529156_-	phage protein	NA	Q938N4	Temperate_phage	98.0	2.3e-20
SQF13164.1|1529187_1529952_-	P1-type antirepressor	NA	Q938N5	Temperate_phage	81.8	1.7e-111
SQF13165.1|1529948_1530137_-	putative cro protein	NA	A0A0B5A7F0	Streptococcus_phage	65.6	1.8e-14
SQF13166.1|1530197_1530611_+	phage protein	NA	NA	NA	NA	NA
SQF13167.1|1530783_1531545_-	Antirepressor	NA	Q6SEF4	Lactobacillus_prophage	63.2	3.3e-86
SQF13168.1|1531711_1531984_+	phage protein	NA	NA	NA	NA	NA
SQF13169.1|1531972_1532173_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF13170.1|1532208_1532424_-	XRE family transcriptional regulator	NA	J7KK54	Streptococcus_phage	98.6	5.0e-32
SQF13171.1|1532497_1532725_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF13172.1|1532841_1533621_+	Uncharacterised protein	NA	A0A1S5S7L0	Streptococcus_phage	57.4	6.2e-48
SQF13173.1|1533556_1533721_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF13174.1|1533754_1533913_-	Uncharacterised protein	NA	J7KH24	Streptococcus_phage	92.3	1.7e-21
SQF13175.1|1534008_1534110_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF13176.1|1534276_1535035_+	Repressor protein	NA	J7KJ52	Streptococcus_phage	88.0	1.2e-120
SQF13177.1|1535107_1535530_+	Lj965 prophage superinfection immunity protein	NA	NA	NA	NA	NA
SQF13178.1|1535650_1536787_+|integrase	Prophage NZ131.3 integrase	integrase	A0A1B1IMP1	Lactococcus_phage	35.6	1.3e-57
SQF13179.1|1536846_1537146_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF13180.1|1537202_1537940_-	transcriptional regulator, MerR family	NA	NA	NA	NA	NA
SQF13181.1|1538091_1538679_-	DNA polymerase III subunit epsilon	NA	A0A0A8WJ41	Clostridium_phage	28.9	9.2e-12
SQF13182.1|1538727_1539258_-	DNA-binding protein	NA	NA	NA	NA	NA
SQF13183.1|1539463_1540633_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein MnmG	tRNA	A0A2H4PQX1	Staphylococcus_phage	53.0	5.5e-16
1545169:1545184	attR	TGTTTGTCATACTCAA	NA	NA	NA	NA
>prophage 12
LS483332	Streptococcus pyogenes strain NCTC12696 genome assembly, chromosome: 1	1845052	1763594	1783062	1845052		Streptococcus_phage(64.71%)	23	NA	NA
SQF13372.1|1763594_1764815_-	transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.6	3.5e-05
SQF13373.1|1764825_1766808_-	DNA mismatch repair protein	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	2.3e-62
SQF13374.1|1766902_1768048_-	DNA integration/recombination/inversion protein	NA	A0A1X9I5Y5	Streptococcus_phage	44.9	3.5e-84
SQF13375.1|1769294_1770062_-	repressor protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
SQF13376.1|1770215_1770422_+	Cro/CI family phage transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
SQF13377.1|1770455_1770656_+	phage transcriptional repressor	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
SQF13378.1|1770676_1771084_+	phage protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
SQF13379.1|1771096_1771219_+	phage protein	NA	NA	NA	NA	NA
SQF13380.1|1771501_1772023_+	phage protein	NA	R9QNB1	Lactococcus_phage	40.2	7.4e-21
SQF13381.1|1772267_1772600_+	phage protein	NA	NA	NA	NA	NA
SQF13382.1|1772596_1772791_+	phage protein	NA	NA	NA	NA	NA
SQF13383.1|1772803_1773166_+	phage protein	NA	NA	NA	NA	NA
SQF13384.1|1773162_1773492_+	phage protein	NA	NA	NA	NA	NA
SQF13385.1|1773494_1773767_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
SQF13386.1|1773767_1774625_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	74.8	9.0e-125
SQF13387.1|1774593_1776282_+	phage/plasmid primase, P4 family, C-terminal domain protein	NA	A0A1X9I717	Streptococcus_phage	82.0	1.2e-258
SQF13388.1|1776568_1776742_+	Uncharacterised protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
SQF13389.1|1776922_1777432_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	62.5	4.2e-29
SQF13390.1|1777506_1777995_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
SQF13391.1|1778398_1778761_+	phage protein	NA	A0A2H4JFS1	uncultured_Caudovirales_phage	29.9	8.7e-05
SQF13392.1|1778735_1779119_+	phage protein	NA	A0A286QPF1	Streptococcus_phage	35.5	1.1e-08
SQF13393.1|1779319_1779925_+	phage protein	NA	NA	NA	NA	NA
SQF13394.1|1780506_1783062_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	23.3	5.2e-43
