The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483335	Streptococcus pyogenes strain NCTC8332 genome assembly, chromosome: 1	1921449	36227	47345	1921449	transposase	Synechococcus_phage(33.33%)	7	NA	NA
SQF16878.1|36227_40001_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.4	3.0e-39
SQF16879.1|40234_41689_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	3.7e-54
SQF16880.1|41716_42739_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	42.0	1.4e-63
SQF16881.1|42906_43461_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	2.6e-24
SQF16882.1|43644_45192_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	51.3	3.4e-45
SQF16883.1|45261_46125_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF16884.1|46220_47345_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
>prophage 2
LS483335	Streptococcus pyogenes strain NCTC8332 genome assembly, chromosome: 1	1921449	333228	339260	1921449		Streptococcus_phage(100.0%)	9	NA	NA
SQF17150.1|333228_333864_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.0e-65
SQF17151.1|333881_334757_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
SQF17152.1|334775_335015_+	Tpl protein	NA	NA	NA	NA	NA
SQF17153.1|335418_335742_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF17154.1|335746_336610_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.3	1.9e-114
SQF17155.1|336636_337029_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF17156.1|337075_337705_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQF17157.1|338002_338359_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.8e-39
SQF17158.1|338432_339260_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.3	5.8e-129
>prophage 3
LS483335	Streptococcus pyogenes strain NCTC8332 genome assembly, chromosome: 1	1921449	347607	390361	1921449	bacteriocin,transposase,protease,tRNA	Mycobacterium_phage(18.18%)	49	NA	NA
SQF17162.1|347607_349605_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.0	1.3e-86
SQF17163.1|350099_351113_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.4	5.5e-97
SQF17164.1|351116_351605_+	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
SQF17165.1|351571_353752_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.2	9.5e-171
SQF17166.1|353955_354708_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQF17167.1|355164_355617_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF17168.1|355804_356056_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF17169.1|356150_356852_-	phage protein	NA	NA	NA	NA	NA
SQF17170.1|357530_357863_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17171.1|357902_358028_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17172.1|358164_358863_-	exotoxin J	NA	NA	NA	NA	NA
SQF17173.1|359131_359788_-	phage protein	NA	NA	NA	NA	NA
SQF17174.1|360147_360384_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQF17175.1|360376_361075_+	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.2	1.2e-10
SQF17176.1|361150_362110_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQF17177.1|362442_363780_+	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQF17178.1|363952_365335_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.0	8.5e-32
SQF17179.1|365368_365923_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQF17180.1|365922_366174_+	membrane protein	NA	NA	NA	NA	NA
SQF17181.1|366193_366889_+	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQF17182.1|367039_367381_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17183.1|367479_368127_-	metalloregulator ScaR	NA	NA	NA	NA	NA
SQF17184.1|368272_369205_+	manganese-binding protein	NA	NA	NA	NA	NA
SQF17185.1|369268_369994_+	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.1e-17
SQF17186.1|369994_370849_+	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQF17187.1|370995_371802_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.9e-20
SQF17188.1|372018_374424_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
SQF17189.1|374494_374848_-	integral membrane protein	NA	NA	NA	NA	NA
SQF17190.1|375091_375517_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQF17191.1|375622_376312_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQF17192.1|376636_377365_+	uridylate kinase	NA	NA	NA	NA	NA
SQF17193.1|377393_377951_+	ribosome recycling factor	NA	NA	NA	NA	NA
SQF17194.1|378059_378917_+	s1 RNA binding domain	NA	NA	NA	NA	NA
SQF17195.1|378989_379499_+	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQF17196.1|379495_379711_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF17197.1|379866_381036_+	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.5e-16
SQF17198.1|381349_383122_+	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQF17199.1|383280_384333_+	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQF17200.1|384378_384954_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQF17201.1|385112_385610_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQF17202.1|385590_385998_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF17203.1|386117_387014_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF17204.1|387033_387510_+	phosphohydrolase	NA	NA	NA	NA	NA
SQF17205.1|387815_388070_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17206.1|388467_388713_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF17207.1|388727_388910_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF17208.1|389247_389397_-|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQF17209.1|389393_389816_-|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
SQF17210.1|390133_390361_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 4
LS483335	Streptococcus pyogenes strain NCTC8332 genome assembly, chromosome: 1	1921449	526884	558221	1921449	transposase,bacteriocin,tRNA	Streptococcus_phage(50.0%)	29	NA	NA
SQF17346.1|526884_528231_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.1e-55
SQF17347.1|528644_529535_+	P-loop ATPase protein family protein	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
SQF17348.1|529531_530509_+	transporter	NA	A1IMD5	Streptococcus_phage	74.2	1.2e-138
SQF17349.1|530505_531417_+	sporulation Regulator WhiA C terminal domain-containing protein	NA	Q7AWZ3	Streptococcus_phage	64.0	1.1e-104
SQF17350.1|531744_532158_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17351.1|532455_532701_+|transposase	truncated transposase	transposase	NA	NA	NA	NA
SQF17352.1|532658_533042_+|transposase	transposase	transposase	Q9MBM9	Staphylococcus_prophage	39.7	3.9e-19
SQF17353.1|533218_534352_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF17354.1|534356_534578_+	hupothetical protein	NA	NA	NA	NA	NA
SQF17355.1|534798_535452_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	33.0	4.0e-24
SQF17356.1|536284_537703_+	dipeptidase	NA	NA	NA	NA	NA
SQF17357.1|537854_539402_+	high-affinity zinc uptake system protein	NA	NA	NA	NA	NA
SQF17358.1|539552_540275_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF17359.1|540294_541494_+	tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA	NA
SQF17360.1|541590_541851_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQF17361.1|541965_542907_-	DHH family protein	NA	NA	NA	NA	NA
SQF17362.1|543300_543750_+	flavodoxin	NA	NA	NA	NA	NA
SQF17363.1|543924_544209_+	chorismate mutase	NA	NA	NA	NA	NA
SQF17364.1|544201_545464_+	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	50.3	1.2e-93
SQF17365.1|545578_545926_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQF17366.1|546940_547510_+	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA	NA
SQF17367.1|547510_549463_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	46.2	8.9e-144
SQF17368.1|549830_551555_+	septation ring formation regulator	NA	NA	NA	NA	NA
SQF17369.1|551686_552145_-	hypothetical cytosolic protein	NA	W6LLD2	Streptococcus_phage	39.1	1.8e-18
SQF17370.1|552377_553685_+	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
SQF17371.1|554454_554616_+|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
SQF17372.1|554837_555788_+	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQF17373.1|555784_556843_+|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
SQF17374.1|556862_558221_+|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
>prophage 5
LS483335	Streptococcus pyogenes strain NCTC8332 genome assembly, chromosome: 1	1921449	618791	629394	1921449		Streptococcus_phage(57.14%)	9	NA	NA
SQF17429.1|618791_621002_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.9	8.5e-268
SQF17430.1|621109_622273_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQF17431.1|622269_622956_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF17432.1|623049_624216_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF17433.1|624276_624618_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
SQF17434.1|624838_626191_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.2	7.0e-31
SQF17435.1|626278_627547_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF17436.1|627576_628017_-	membrane protein	NA	NA	NA	NA	NA
SQF17437.1|628251_629394_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	8.3e-25
>prophage 6
LS483335	Streptococcus pyogenes strain NCTC8332 genome assembly, chromosome: 1	1921449	656350	691341	1921449	head,transposase,protease,tRNA	Bacillus_phage(25.0%)	35	NA	NA
SQF17462.1|656350_657082_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQF17463.1|657081_658074_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
SQF17464.1|658251_659310_+	regulatory protein	NA	NA	NA	NA	NA
SQF17465.1|659322_660246_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQF17466.1|660546_661215_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.7	4.8e-17
SQF17467.1|661211_662123_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQF17468.1|662119_664066_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQF17469.1|664164_664758_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.5e-11
SQF17470.1|664908_665616_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	1.9e-11
SQF17471.1|665771_665891_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQF17472.1|666187_666862_-	exotoxin J	NA	NA	NA	NA	NA
SQF17473.1|667026_667791_-	Exotoxin type C precursor	NA	Q938J1	Temperate_phage	81.6	4.9e-114
SQF17474.1|667950_668814_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF17475.1|668861_669887_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQF17476.1|670390_670567_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF17477.1|670794_671175_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF17478.1|671174_672023_+	degV family protein	NA	NA	NA	NA	NA
SQF17479.1|672147_673356_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	5.3e-38
SQF17480.1|673352_675230_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.5	8.7e-64
SQF17481.1|676121_676532_+	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF17482.1|676612_678007_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQF17483.1|678057_678624_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQF17484.1|678843_679494_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF17485.1|679496_680165_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF17486.1|680173_681406_+	two component system histidine kinase	NA	NA	NA	NA	NA
SQF17487.1|681699_682578_+	mevalonate kinase	NA	NA	NA	NA	NA
SQF17488.1|682559_683504_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF17489.1|683496_684510_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF17490.1|684496_685486_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF17491.1|685715_686993_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF17492.1|686979_688155_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF17493.1|688375_689215_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQF17494.1|689294_689792_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	1.1e-10
SQF17495.1|689811_689982_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF17496.1|690111_691341_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	1.7e-137
>prophage 7
LS483335	Streptococcus pyogenes strain NCTC8332 genome assembly, chromosome: 1	1921449	724475	777927	1921449	portal,tRNA,tail,integrase,terminase	Streptococcus_phage(78.85%)	68	738778:738826	779024:779072
SQF17528.1|724475_725375_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQF17529.1|725447_726686_+	GTP-binding protein HflX	NA	NA	NA	NA	NA
SQF17530.1|726669_727314_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
SQF17531.1|727328_728258_+	ribonuclease Z	NA	NA	NA	NA	NA
SQF17532.1|728257_729022_+	short chain dehydrogenase	NA	NA	NA	NA	NA
SQF17533.1|729018_731229_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.2	6.6e-71
SQF17534.1|731378_731897_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	42.4	3.9e-30
SQF17535.1|731977_732661_+	DNA replication protein DnaD	NA	Q938N2	Temperate_phage	36.8	2.2e-09
SQF17536.1|732657_733314_+	endonuclease III	NA	NA	NA	NA	NA
SQF17537.1|733385_734072_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SQF17538.1|734061_734850_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF17539.1|734889_735996_+	FAD dependent oxidoreductase family protein	NA	NA	NA	NA	NA
SQF17540.1|736053_736923_+	glucose-1-phosphate thymidyl transferase	NA	K7QKA7	Escherichia_phage	64.6	2.4e-101
SQF17541.1|736922_737516_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
SQF17542.1|737759_738800_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.1e-68
738778:738826	attL	AAACTCAAGAAGTGATTAAATAAAACATTAAAGAACCTTGTCATATCAA	NA	NA	NA	NA
SQF17543.1|738882_740022_-|integrase	phage integrase	integrase	A1EAB7	Streptococcus_phage	56.3	1.2e-119
SQF17544.1|740149_740416_-	phage protein	NA	NA	NA	NA	NA
SQF17545.1|740427_740814_-	phage protein	NA	M1PFJ2	Streptococcus_phage	55.5	3.3e-34
SQF17546.1|740816_741167_-	DNA-binding phage protein	NA	C5J980	Streptococcus_phage	62.6	1.1e-33
SQF17547.1|741474_741690_+	phage protein	NA	M1Q1B4	Streptococcus_phage	79.7	1.2e-25
SQF17548.1|741700_741967_+	phage protein	NA	A0A1S5SC19	Streptococcus_phage	66.3	1.1e-23
SQF17549.1|741901_742708_-	protein Ymh	NA	A0A1S5SBU1	Streptococcus_phage	82.1	7.9e-123
SQF17550.1|742849_743089_-	phage protein	NA	NA	NA	NA	NA
SQF17551.1|743255_743441_+	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQF17552.1|743518_743830_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	80.4	8.2e-44
SQF17553.1|743831_744002_+	phage protein	NA	A7J273	Streptococcus_phage	89.3	1.2e-20
SQF17554.1|743994_744198_+	phage protein	NA	NA	NA	NA	NA
SQF17555.1|744194_744581_+	phage protein	NA	A7J274	Streptococcus_phage	89.0	3.3e-58
SQF17556.1|744577_744715_+	phage protein	NA	NA	NA	NA	NA
SQF17557.1|744724_745075_+	phage protein	NA	NA	NA	NA	NA
SQF17558.1|745071_745275_+	phage protein	NA	A7J276	Streptococcus_phage	98.5	1.6e-32
SQF17559.1|745363_745663_+	phage protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
SQF17560.1|745662_746820_+	phage protein	NA	A7J278	Streptococcus_phage	97.9	8.8e-216
SQF17561.1|746834_747392_+	phage protein	NA	D2J040	Enterococcus_phage	58.5	3.3e-51
SQF17562.1|747434_749357_+	phage DNA polymerase	NA	A7J280	Streptococcus_phage	99.1	0.0e+00
SQF17563.1|749361_751746_+	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	94.8	4.8e-277
SQF17564.1|752131_752407_+	phage protein	NA	A7J283	Streptococcus_phage	97.8	7.7e-46
SQF17565.1|752403_753726_+	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.7	5.1e-252
SQF17566.1|753726_753897_+	phage protein	NA	A7J285	Streptococcus_phage	92.3	9.0e-21
SQF17567.1|753889_754162_+	phage membrane protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
SQF17568.1|754164_754311_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17569.1|754294_754711_+	phage protein	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
SQF17570.1|754800_755253_+|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
SQF17571.1|755242_756520_+|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	99.8	3.1e-246
SQF17572.1|756535_758068_+|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.8	4.5e-292
SQF17573.1|758027_759476_+	phage protein	NA	A7J293	Streptococcus_phage	99.8	1.2e-278
SQF17574.1|759575_759692_+	phage membrane protein	NA	A7J294	Streptococcus_phage	100.0	2.0e-08
SQF17575.1|759696_759963_+	putative phage associated protein	NA	Q938K9	Temperate_phage	96.6	2.9e-37
SQF17576.1|760130_760700_+	phage protein	NA	A7J296	Streptococcus_phage	100.0	1.9e-83
SQF17577.1|760712_761600_+	phage protein	NA	A7J297	Streptococcus_phage	100.0	2.1e-161
SQF17578.1|761611_761968_+	phage protein	NA	A7J298	Streptococcus_phage	100.0	4.6e-59
SQF17579.1|761978_762257_+	phage protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
SQF17580.1|762253_762598_+	phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
SQF17581.1|762601_762961_+	phage protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
SQF17582.1|762972_763572_+|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
SQF17583.1|763625_764081_+	phage protein	NA	A7J2A3	Streptococcus_phage	98.7	1.2e-75
SQF17584.1|764155_764389_+	phage protein	NA	A7J2A4	Streptococcus_phage	97.4	6.4e-33
SQF17585.1|764403_768786_+|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	74.0	1.3e-224
SQF17586.1|768797_769640_+	phage protein	NA	A7J2A6	Streptococcus_phage	97.5	3.9e-157
SQF17587.1|769649_771632_+	phage protein	NA	A7J2A7	Streptococcus_phage	93.9	0.0e+00
SQF17588.1|771631_772741_+	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	71.3	1.3e-120
SQF17589.1|772750_774769_+	Phage infection protein	NA	Q938J9	Temperate_phage	58.8	3.9e-126
SQF17590.1|774777_774939_+	phage protein	NA	NA	NA	NA	NA
SQF17591.1|774941_775553_+	phage protein	NA	Q938J7	Temperate_phage	91.1	8.8e-82
SQF17592.1|775563_775884_+	Uncharacterised protein	NA	A3F663	Streptococcus_phage	99.1	1.2e-50
SQF17593.1|775896_776229_+	N-acetylmuramoyl-L-alanine amidase	NA	A3F664	Streptococcus_phage	98.2	2.8e-50
SQF17594.1|776230_776983_+	phage-associated cell wall hydrolase	NA	A3F665	Streptococcus_phage	96.8	1.0e-140
SQF17595.1|777147_777927_+	exotoxin I precursor	NA	A0A075M4C7	Staphylococcus_phage	32.3	4.6e-27
779024:779072	attR	AAACTCAAGAAGTGATTAAATAAAACATTAAAGAACCTTGTCATATCAA	NA	NA	NA	NA
>prophage 8
LS483335	Streptococcus pyogenes strain NCTC8332 genome assembly, chromosome: 1	1921449	972534	1104277	1921449	head,portal,transposase,tRNA,tail,integrase,terminase,holin,capsid	Streptococcus_phage(61.98%)	177	1006080:1006096	1113673:1113689
SQF17783.1|972534_973419_-|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
SQF17784.1|973534_974875_-	Serine/threonine-protein kinase MRCK beta	NA	NA	NA	NA	NA
SQF17785.1|974971_975928_-	membrane protein	NA	NA	NA	NA	NA
SQF17786.1|975938_976535_-	type I restriction-modification system specificty subunit	NA	NA	NA	NA	NA
SQF17787.1|976626_979263_-	permease family protein	NA	NA	NA	NA	NA
SQF17788.1|979277_979979_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.5	1.7e-36
SQF17789.1|980096_980639_+	bacterial regulatory s, tetR family protein	NA	NA	NA	NA	NA
SQF17790.1|980781_981423_-	bacterial regulatory s, gntR family protein	NA	NA	NA	NA	NA
SQF17791.1|981585_982074_-	general stress protein, Gls24 family	NA	NA	NA	NA	NA
SQF17792.1|982084_982285_-	csbD-like family protein	NA	J7KJ36	Streptococcus_phage	51.5	2.3e-07
SQF17793.1|982325_982865_-	response regulator	NA	NA	NA	NA	NA
SQF17794.1|982877_983066_-	membrane protein	NA	NA	NA	NA	NA
SQF17795.1|983076_983664_-	membrane protein	NA	NA	NA	NA	NA
SQF17796.1|983724_983973_-	transglycosylase associated family protein	NA	NA	NA	NA	NA
SQF17797.1|984335_986654_-	DNA helicase II / ATP-dependent DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.3	7.1e-132
SQF17798.1|987183_988506_+	amino acid symporter	NA	NA	NA	NA	NA
SQF17799.1|988625_989861_+	cation diffusion facilitator transporter family protein	NA	NA	NA	NA	NA
SQF17800.1|990230_991004_-	protein B	NA	NA	NA	NA	NA
SQF17801.1|991372_992209_-	polar amino acid ABC uptake transporter substrate binding protein	NA	NA	NA	NA	NA
SQF17802.1|992224_992854_-	histidine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	1.3e-27
SQF17803.1|992863_993505_-	histidine transporter permease	NA	NA	NA	NA	NA
SQF17804.1|993611_993947_-	phosphonoacetate hydrolase	NA	NA	NA	NA	NA
SQF17805.1|994142_995957_-	glucosamine-fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.7	1.2e-97
SQF17806.1|996132_996690_-	signal peptidase I	NA	NA	NA	NA	NA
SQF17807.1|996907_998410_-	pyruvate kinase	NA	NA	NA	NA	NA
SQF17808.1|998472_999486_-	6-phosphofructokinase	NA	NA	NA	NA	NA
SQF17809.1|999565_1002676_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.8	5.4e-119
SQF17810.1|1002860_1003232_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF17811.1|1003231_1003930_+	ABC transporter family protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
SQF17812.1|1003939_1004725_+	ABC transporter permease protein	NA	NA	NA	NA	NA
SQF17813.1|1004851_1005466_-	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
SQF17814.1|1006056_1006245_-	paratox	NA	A3F673	Streptococcus_phage	83.1	1.3e-20
1006080:1006096	attL	CCATCACTTCTTCCACT	NA	NA	NA	NA
SQF17815.1|1006482_1007283_+	streptodornase	NA	NA	NA	NA	NA
SQF17816.1|1007553_1007988_+	phage membrane protein	NA	NA	NA	NA	NA
SQF17817.1|1008057_1009263_-	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	84.3	1.7e-206
SQF17818.1|1009259_1009370_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	94.4	3.0e-09
SQF17819.1|1009378_1009606_-	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQF17820.1|1009602_1009878_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQF17821.1|1009887_1010505_-	phage protein	NA	Q938J7	Temperate_phage	89.3	2.7e-78
SQF17822.1|1010507_1010669_-	phage protein	NA	NA	NA	NA	NA
SQF17823.1|1010682_1012593_-	phage infection protein	NA	Q938J9	Temperate_phage	67.8	1.3e-120
SQF17824.1|1012605_1013613_-	phage hyaluronidase	NA	A7J2A8	Streptococcus_phage	71.7	1.4e-137
SQF17825.1|1013609_1015661_-	phage protein	NA	A3F656	Streptococcus_phage	84.6	0.0e+00
SQF17826.1|1015657_1016437_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	55.5	1.9e-68
SQF17827.1|1016468_1019735_-	tape measure domain protein	NA	U6E979	Streptococcus_phage	30.4	1.6e-04
SQF17828.1|1019749_1020079_-	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	41.5	2.0e-11
SQF17829.1|1020120_1020480_-	phage protein	NA	D7RWD6	Brochothrix_phage	44.5	4.3e-20
SQF17830.1|1020532_1021180_-|tail	phage major tail protein	tail	D7RWD5	Brochothrix_phage	52.0	1.4e-40
SQF17831.1|1021189_1021579_-	phage protein	NA	Q38611	Lactococcus_phage	68.2	3.5e-44
SQF17832.1|1021575_1021941_-	phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	7.7e-17
SQF17833.1|1021921_1022230_-	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
SQF17834.1|1022226_1022580_-	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
SQF17835.1|1022593_1022836_-	phage protein	NA	NA	NA	NA	NA
SQF17836.1|1022845_1023922_-|head	phage head protein	head	A0A2H4J022	uncultured_Caudovirales_phage	56.0	5.5e-103
SQF17837.1|1023921_1024302_-	structural protein	NA	A0A0K2CNR0	Brevibacillus_phage	37.1	5.8e-07
SQF17838.1|1024311_1024845_-	phage protein	NA	A0A141E0S7	Streptococcus_phage	83.9	1.4e-14
SQF17839.1|1024979_1025246_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	84.1	1.7e-34
SQF17840.1|1025305_1025485_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17841.1|1025475_1027101_-|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	U6E9F1	Streptococcus_phage	43.8	1.1e-46
SQF17842.1|1027081_1028584_-|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.3	4.1e-141
SQF17843.1|1028595_1029903_-|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.2	5.9e-184
SQF17844.1|1029880_1030312_-|terminase	phage terminase small subunit	terminase	A0A1S5SCD2	Streptococcus_phage	72.6	1.8e-49
SQF17845.1|1030880_1031321_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	97.3	7.2e-78
SQF17846.1|1031591_1032227_-	phage protein	NA	L0P368	Streptococcus_phage	67.9	5.5e-87
SQF17847.1|1032226_1032628_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17848.1|1032640_1032841_-	Uncharacterised protein	NA	A0A0E3T873	Gordonia_phage	45.3	4.6e-08
SQF17849.1|1032845_1033130_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
SQF17850.1|1033126_1033297_-	phage protein	NA	Q938M0	Temperate_phage	100.0	8.5e-11
SQF17851.1|1033293_1033707_-	phage protein	NA	Q938M1	Temperate_phage	62.4	4.6e-34
SQF17852.1|1033690_1033978_-	phage protein	NA	J7KDH9	Streptococcus_phage	75.0	5.1e-32
SQF17853.1|1033977_1034223_-	phage protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	93.8	4.8e-39
SQF17854.1|1034219_1034576_-	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	97.5	2.1e-59
SQF17855.1|1034572_1035013_-	phage protein	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.9	4.5e-80
SQF17856.1|1035221_1035641_-	single-stranded DNA-binding protein ssb	NA	Q938M7	Temperate_phage	97.1	3.1e-70
SQF17857.1|1035633_1036308_-	Single-stranded DNA-binding protein	NA	Q938M8	Temperate_phage	97.3	2.0e-103
SQF17858.1|1036308_1036791_-	phage protein	NA	Q938M9	Temperate_phage	98.8	1.6e-49
SQF17859.1|1036811_1037066_-	phage protein	NA	Q938N0	Temperate_phage	97.6	1.8e-41
SQF17860.1|1037046_1037403_-	phage protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	99.2	3.0e-50
SQF17861.1|1037413_1037551_-	phage protein	NA	J7KBQ4	Streptococcus_phage	75.7	3.5e-07
SQF17862.1|1037550_1038393_-	phage DNA replication protein	NA	A0A1S5S7L9	Streptococcus_phage	40.7	1.3e-48
SQF17863.1|1038402_1039305_-	DNA replication protein dnaD	NA	J7KBV5	Streptococcus_phage	87.5	3.0e-118
SQF17864.1|1039318_1039633_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	94.2	5.9e-50
SQF17865.1|1039648_1039783_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	95.5	9.6e-18
SQF17866.1|1039779_1040076_-	phage protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	84.7	2.3e-43
SQF17867.1|1040153_1040339_-	phage protein	NA	J7KH19	Streptococcus_phage	68.9	4.6e-18
SQF17868.1|1040482_1040701_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17869.1|1040686_1040818_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17870.1|1040837_1041044_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17871.1|1041230_1041440_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17872.1|1041549_1041750_-	helix-turn-helix family protein	NA	A0A141E205	Streptococcus_phage	59.6	2.7e-08
SQF17873.1|1041847_1042531_+	phage protein	NA	A0A1X9I5M7	Streptococcus_phage	59.4	1.2e-71
SQF17874.1|1042488_1042623_-	Uncharacterised protein	NA	X2KTZ3	Streptococcus_phage	79.5	3.4e-07
SQF17875.1|1042658_1042817_-	Uncharacterised protein	NA	J7KH24	Streptococcus_phage	92.3	3.4e-22
SQF17876.1|1042912_1043014_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17877.1|1043172_1044009_+	phage transcriptional repressor	NA	A0A097PBE5	Streptococcus_pyogenes_phage	88.0	1.8e-125
SQF17878.1|1044021_1044831_+	phage protein	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
SQF17879.1|1045080_1046169_+|integrase	integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	99.4	4.2e-204
SQF17880.1|1046426_1046609_-	phage protein	NA	A3F673	Streptococcus_phage	71.7	1.0e-17
SQF17881.1|1046807_1047017_-	repressor C1	NA	A3F668	Streptococcus_phage	100.0	1.2e-30
SQF17882.1|1047170_1047317_+	Uncharacterised protein	NA	A3F667	Streptococcus_phage	97.9	4.0e-17
SQF17883.1|1047457_1047709_+	Uncharacterised protein	NA	A3F666	Streptococcus_phage	96.4	2.8e-42
SQF17884.1|1047972_1048212_+	Phage protein	NA	NA	NA	NA	NA
SQF17885.1|1048269_1048626_+	phage protein	NA	NA	NA	NA	NA
SQF17886.1|1048741_1049950_-	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	87.5	2.9e-214
SQF17887.1|1049946_1050057_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.2	1.8e-09
SQF17888.1|1050065_1050293_-	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	7.6e-31
SQF17889.1|1050289_1050562_-	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQF17890.1|1050573_1051206_-	phage protein	NA	Q938J7	Temperate_phage	49.5	2.0e-44
SQF17891.1|1051208_1051637_-	phage protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
SQF17892.1|1051648_1053553_-	Phage infection protein	NA	Q938J9	Temperate_phage	83.7	1.1e-210
SQF17893.1|1053562_1054570_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	64.9	9.9e-115
SQF17894.1|1054566_1056618_-	phage protein	NA	A3F656	Streptococcus_phage	85.3	0.0e+00
SQF17895.1|1056614_1057385_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	87.5	2.1e-128
SQF17896.1|1057397_1061498_-|tail	tail protein	tail	A3F654	Streptococcus_phage	68.4	0.0e+00
SQF17897.1|1061541_1061640_-	Uncharacterised protein	NA	A3F653	Streptococcus_phage	96.9	7.0e-10
SQF17898.1|1061723_1062026_-	Uncharacterised protein	NA	A3F652	Streptococcus_phage	96.0	1.8e-48
SQF17899.1|1062118_1062703_-|tail	major tail protein - phage associated	tail	A3F651	Streptococcus_phage	90.2	3.1e-92
SQF17900.1|1062714_1063095_-	Uncharacterised protein	NA	A3F650	Streptococcus_phage	99.2	7.4e-63
SQF17901.1|1063087_1063486_-	Uncharacterised protein	NA	A3F649	Streptococcus_phage	100.0	2.9e-70
SQF17902.1|1063487_1063850_-	Uncharacterised protein	NA	A3F648	Streptococcus_phage	97.5	1.1e-60
SQF17903.1|1063842_1064151_-	Uncharacterised protein	NA	A3F647	Streptococcus_phage	99.0	1.2e-47
SQF17904.1|1064150_1064324_-	Uncharacterised protein	NA	A3F646	Streptococcus_phage	94.7	6.4e-22
SQF17905.1|1064337_1065471_-|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A3F645	Streptococcus_phage	96.8	3.2e-202
SQF17906.1|1065487_1066294_-	scaffolding protein	NA	A3F644	Streptococcus_phage	98.1	4.6e-147
SQF17907.1|1066274_1067462_-|portal	HK97 family phage portal protein	portal	A3F643	Streptococcus_phage	96.2	5.6e-218
SQF17908.1|1067614_1067827_-	Uncharacterised protein	NA	A3F642	Streptococcus_phage	97.1	1.4e-34
SQF17909.1|1067829_1069560_-|terminase	putative phage terminase, large subunit	terminase	A3F641	Streptococcus_phage	97.0	0.0e+00
SQF17910.1|1069572_1069890_-	Uncharacterised protein	NA	A3F640	Streptococcus_phage	99.0	3.9e-49
SQF17911.1|1070030_1070336_-	HNH endonuclease	NA	A3F639	Streptococcus_phage	96.0	3.8e-54
SQF17912.1|1070328_1070715_-	Uncharacterised protein	NA	A3F638	Streptococcus_phage	93.0	1.4e-64
SQF17913.1|1070740_1070944_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17914.1|1071001_1071295_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17915.1|1071448_1072024_-	phage associated recombinase	NA	A3F636	Streptococcus_phage	99.5	7.4e-107
SQF17916.1|1072183_1072585_-	phage 31 late promoter transcriptional activator	NA	A3F635	Streptococcus_phage	100.0	2.7e-71
SQF17917.1|1072599_1073427_-	B-cell receptor associated protein-like protein	NA	A3F634	Streptococcus_phage	100.0	1.3e-117
SQF17918.1|1073429_1073768_-	immunity repressor protein - phage associated	NA	A3F633	Streptococcus_phage	92.9	1.1e-54
SQF17919.1|1073764_1074046_-	Uncharacterised protein	NA	A3F632	Streptococcus_phage	92.2	4.5e-33
SQF17920.1|1074060_1074453_-	single strand binding protein	NA	A0A1P8VVS8	Streptococcus_phage	70.3	6.9e-48
SQF17921.1|1074449_1074671_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17922.1|1074667_1075153_-	phage protein	NA	A0A1S5S9L5	Streptococcus_phage	41.4	5.6e-23
SQF17923.1|1075157_1075790_-	phage protein	NA	L0P368	Streptococcus_phage	65.7	5.9e-81
SQF17924.1|1075791_1076061_-	phage membrane protein	NA	A7J287	Streptococcus_phage	80.9	1.4e-28
SQF17925.1|1076057_1076228_-	phage protein	NA	Q938M0	Temperate_phage	55.4	2.7e-09
SQF17926.1|1076224_1076668_-	phage protein	NA	A0A1C9LX52	Streptococcus_phage	55.0	1.6e-32
SQF17927.1|1076684_1076810_-	phage protein	NA	NA	NA	NA	NA
SQF17928.1|1076823_1077051_-	phage protein	NA	C5J991	Streptococcus_phage	49.3	9.3e-13
SQF17929.1|1077050_1077863_-	phage DNA replication protein	NA	A0A1P8VVV9	Streptococcus_phage	77.6	5.2e-122
SQF17930.1|1077862_1078624_-	dnaD and phage-associated domain protein	NA	A0A220GFI5	Streptococcus_phage	56.1	9.1e-28
SQF17931.1|1078616_1079957_-	DNA polymerase III delta prime subunit	NA	A0A1P8VVQ6	Streptococcus_phage	84.7	7.1e-209
SQF17932.1|1079943_1080132_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17933.1|1080252_1080444_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17934.1|1080536_1080794_-	phage protein	NA	A3F618	Streptococcus_phage	98.8	5.4e-41
SQF17935.1|1080867_1081587_-	antirepressor - phage associated	NA	A3F617	Streptococcus_phage	78.7	4.6e-106
SQF17936.1|1081638_1082139_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17937.1|1082258_1082393_-	Uncharacterised protein	NA	A3F616	Streptococcus_phage	95.5	2.4e-16
SQF17938.1|1082466_1082679_-	phage protein	NA	M1Q1B4	Streptococcus_phage	52.9	1.7e-13
SQF17939.1|1082713_1082989_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF17940.1|1083277_1083628_+	repressor - phage associated	NA	A0A1S5SAD3	Streptococcus_phage	63.5	1.2e-35
SQF17941.1|1083631_1084024_+	phage protein	NA	A3F612	Streptococcus_phage	68.7	2.2e-38
SQF17942.1|1084034_1084775_+	phage protein	NA	A3F611	Streptococcus_phage	100.0	1.6e-130
SQF17943.1|1085085_1086282_+|integrase	phage associated integrase	integrase	A3F610	Streptococcus_phage	99.0	3.9e-227
SQF17944.1|1086477_1087098_+	phage protein	NA	NA	NA	NA	NA
SQF17945.1|1087354_1089619_-	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
SQF17946.1|1089653_1091147_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
SQF17947.1|1091261_1092281_-	LacI family transcription regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	1.3e-16
SQF17948.1|1092524_1093772_+	maltose/maltodextrin-binding protein	NA	NA	NA	NA	NA
SQF17949.1|1094045_1095407_+	maltose/maltodextrin ABC transport system permease	NA	NA	NA	NA	NA
SQF17950.1|1095406_1096243_+	maltose transport system permease	NA	NA	NA	NA	NA
SQF17951.1|1096616_1096823_+|transposase	truncated transposase	transposase	NA	NA	NA	NA
SQF17952.1|1096819_1097203_+|transposase	transposase	transposase	Q9MBM9	Staphylococcus_prophage	40.5	5.1e-19
SQF17953.1|1097716_1098700_-	alpha/beta fold family hydrolase	NA	NA	NA	NA	NA
SQF17954.1|1098730_1099981_-	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA	NA
SQF17955.1|1099973_1100213_-	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
SQF17956.1|1100230_1101487_-	Protein dltB	NA	NA	NA	NA	NA
SQF17957.1|1101483_1103022_-	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	28.1	3.5e-42
SQF17958.1|1103033_1103177_-	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA	NA
SQF17959.1|1103413_1104277_-|transposase	transposase	transposase	NA	NA	NA	NA
1113673:1113689	attR	CCATCACTTCTTCCACT	NA	NA	NA	NA
>prophage 9
LS483335	Streptococcus pyogenes strain NCTC8332 genome assembly, chromosome: 1	1921449	1119981	1169762	1921449	transposase,protease,tRNA	Bacillus_phage(23.08%)	46	NA	NA
SQF17975.1|1119981_1120497_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF17976.1|1120517_1121324_+|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	50.4	8.3e-64
SQF17977.1|1121623_1122496_-	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQF17978.1|1122719_1124030_+	membrane protein	NA	NA	NA	NA	NA
SQF17979.1|1124107_1124353_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF17980.1|1124831_1125155_+|transposase	transposase	transposase	A0A1P8CWQ3	Bacillus_phage	46.9	6.1e-18
SQF17981.1|1125171_1125903_-	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQF17982.1|1126017_1126383_+	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQF17983.1|1126502_1127723_-	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQF17984.1|1128096_1129581_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF17985.1|1129685_1130087_-	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQF17986.1|1130171_1130684_-	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	95.9	9.6e-90
SQF17987.1|1130842_1130953_-	phosphorylase Pnp/Udp family protein	NA	NA	NA	NA	NA
SQF17988.1|1130991_1132347_-|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	D0R096	Streptococcus_phage	98.0	3.1e-252
SQF17989.1|1132428_1133880_-	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQF17990.1|1134087_1134579_-	shikimate kinase	NA	NA	NA	NA	NA
SQF17991.1|1134571_1135855_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF17992.1|1135965_1136931_-	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQF17993.1|1136932_1137793_-	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQF17994.1|1137807_1139091_-	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQF17995.1|1139099_1139642_-	acetyltransferase family protein	NA	NA	NA	NA	NA
SQF17996.1|1139879_1140785_-	protein G-related alpha 2M-bindingprotein	NA	NA	NA	NA	NA
SQF17997.1|1141142_1142402_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF17998.1|1142575_1143772_-	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	9.9e-138
SQF17999.1|1144308_1146687_-	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
SQF18000.1|1146890_1147832_+	biotin-protein ligase	NA	NA	NA	NA	NA
SQF18001.1|1148094_1149765_-	DNA polymerase III subunits gamma and tau	NA	E7DN81	Pneumococcus_phage	40.6	6.6e-47
SQF18002.1|1149764_1150262_-	GAF domain-containing protein	NA	NA	NA	NA	NA
SQF18003.1|1150406_1151216_+	membrane protein	NA	NA	NA	NA	NA
SQF18004.1|1151268_1151532_-	membrane protein	NA	NA	NA	NA	NA
SQF18005.1|1151611_1152238_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	2.2e-35
SQF18006.1|1152335_1153421_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.6e-33
SQF18007.1|1153531_1154806_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQF18008.1|1154899_1156327_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQF18009.1|1156511_1158245_-	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQF18010.1|1158249_1158513_-	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQF18011.1|1158905_1159124_+	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
SQF18012.1|1159143_1161303_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.6	4.7e-263
SQF18013.1|1161506_1162466_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.2	1.8e-126
SQF18014.1|1162440_1163754_+	chloride channel protein	NA	NA	NA	NA	NA
SQF18015.1|1163849_1164095_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF18016.1|1164573_1164999_+	Transposase	NA	A0A1P8CWQ3	Bacillus_phage	44.1	2.5e-27
SQF18017.1|1165096_1165792_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF18018.1|1165810_1166572_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF18019.1|1166568_1166790_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQF18020.1|1167143_1169762_-|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	34.1	5.1e-62
>prophage 10
LS483335	Streptococcus pyogenes strain NCTC8332 genome assembly, chromosome: 1	1921449	1178427	1251775	1921449	portal,transposase,tRNA,tail,integrase,terminase,protease,holin,capsid	Streptococcus_phage(67.69%)	92	1207503:1207522	1249160:1249179
SQF18028.1|1178427_1179456_+|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQF18029.1|1179495_1180683_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF18030.1|1180796_1181387_-	S11 family peptidase	NA	NA	NA	NA	NA
SQF18031.1|1181383_1181632_-	lipoprotein	NA	NA	NA	NA	NA
SQF18032.1|1181687_1181834_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF18033.1|1182000_1182606_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.2	1.8e-58
SQF18034.1|1182702_1183743_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SQF18035.1|1183834_1186033_-	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.4	9.0e-52
SQF18036.1|1186037_1186700_-	comE operon 1 domain-containing protein	NA	NA	NA	NA	NA
SQF18037.1|1186899_1187802_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF18038.1|1187806_1188940_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF18039.1|1189083_1189860_+	methyltransferase	NA	NA	NA	NA	NA
SQF18040.1|1189849_1190128_+	GIY-YIG catalytic domain-containing protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	7.9e-06
SQF18041.1|1190151_1192152_-	Kup system potassium uptake protein	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	34.0	5.8e-66
SQF18042.1|1192278_1193898_-	DEAD-box ATP-dependent RNA helicase CshA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	1.9e-59
SQF18043.1|1194204_1195749_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.0	1.8e-35
SQF18044.1|1195996_1196692_-	integral membrane family protein	NA	NA	NA	NA	NA
SQF18045.1|1196771_1198163_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
SQF18046.1|1198353_1199400_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SQF18047.1|1199500_1200097_-	recombination protein	NA	NA	NA	NA	NA
SQF18048.1|1200894_1201674_-	formate transporter	NA	NA	NA	NA	NA
SQF18049.1|1201797_1202340_-	membrane protein	NA	NA	NA	NA	NA
SQF18050.1|1202500_1203022_-	3H domain-containing protein	NA	NA	NA	NA	NA
SQF18051.1|1203128_1203824_-	phosphoglyceromutase	NA	NA	NA	NA	NA
SQF18052.1|1204062_1204998_+	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	44.8	3.0e-65
SQF18053.1|1205297_1207160_-	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	34.1	5.4e-90
1207503:1207522	attL	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQF18054.1|1207692_1207875_-	paratox	NA	A3F673	Streptococcus_phage	76.7	3.1e-19
SQF18055.1|1208114_1208873_+	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQF18056.1|1208983_1209691_+	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
SQF18057.1|1209759_1210512_-	phage-associated cell wall hydrolase	NA	A3F665	Streptococcus_phage	96.8	7.9e-141
SQF18058.1|1210517_1210628_-	putative phage membrane protein	NA	NA	NA	NA	NA
SQF18059.1|1210629_1211085_-|holin	holin	holin	A0A0M4R3G6	Streptococcus_phage	81.5	2.3e-63
SQF18060.1|1211095_1211734_-	phage protein	NA	A3F662	Streptococcus_phage	53.7	1.2e-44
SQF18061.1|1211736_1212165_-	phage protein	NA	A3F661	Streptococcus_phage	86.5	1.7e-63
SQF18062.1|1212176_1214063_-	gp58-like family protein	NA	Q938J9	Temperate_phage	86.5	1.3e-203
SQF18063.1|1214075_1215098_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	91.7	1.2e-168
SQF18064.1|1215094_1217239_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	93.1	0.0e+00
SQF18065.1|1217235_1217943_-	phage protein	NA	Q938K2	Temperate_phage	71.1	1.7e-92
SQF18066.1|1217942_1221866_-|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	48.7	1.9e-238
SQF18067.1|1221878_1222046_-	phage protein	NA	J7KBS0	Streptococcus_phage	87.3	2.9e-19
SQF18068.1|1222075_1222402_-	phage protein	NA	J7KK85	Streptococcus_phage	73.1	6.0e-37
SQF18069.1|1222454_1223063_-|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	70.5	2.3e-74
SQF18070.1|1223079_1223505_-	phage protein	NA	J7KBZ9	Streptococcus_phage	85.1	5.0e-68
SQF18071.1|1223501_1223879_-	phage protein	NA	J7KDM3	Streptococcus_phage	72.8	1.4e-45
SQF18072.1|1223875_1224223_-	phage protein	NA	J7KJ42	Streptococcus_phage	85.5	1.5e-49
SQF18073.1|1224219_1224522_-	phage protein	NA	J7KC36	Streptococcus_phage	87.0	6.1e-44
SQF18074.1|1224657_1225860_-|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	64.4	6.0e-135
SQF18075.1|1225885_1226551_-|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	77.7	4.6e-92
SQF18076.1|1226528_1227749_-|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.7	2.0e-186
SQF18077.1|1227782_1228007_-	phage protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
SQF18078.1|1227999_1228170_-	phage protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
SQF18079.1|1228166_1229921_-|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	96.2	0.0e+00
SQF18080.1|1229935_1230403_-|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
SQF18081.1|1230573_1230912_-	Phage endonuclease	NA	J7KH36	Streptococcus_phage	90.7	3.0e-55
SQF18082.1|1231496_1231937_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	99.3	1.9e-78
SQF18083.1|1232212_1232584_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF18084.1|1232580_1233291_-	phage protein	NA	Q938L9	Temperate_phage	46.2	3.0e-25
SQF18085.1|1233293_1233926_-	phage protein	NA	L0P368	Streptococcus_phage	68.6	2.3e-85
SQF18086.1|1233927_1234212_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	89.4	1.4e-37
SQF18087.1|1234208_1234613_-	phage protein	NA	A3F627	Streptococcus_phage	65.2	1.6e-39
SQF18088.1|1234622_1234892_-	phage protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
SQF18089.1|1234888_1235173_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	96.8	2.2e-48
SQF18090.1|1235218_1235407_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	97.8	5.0e-20
SQF18091.1|1235403_1235760_-	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	97.5	4.6e-59
SQF18092.1|1235743_1236064_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	94.3	7.1e-51
SQF18093.1|1236060_1236474_-	phage protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	50.0	2.8e-15
SQF18094.1|1236735_1238211_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	86.9	5.9e-249
SQF18095.1|1238200_1239004_-	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	98.9	4.3e-153
SQF18096.1|1239015_1239474_-	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	99.3	5.0e-82
SQF18097.1|1239488_1240718_-	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	99.5	2.8e-236
SQF18098.1|1240819_1241500_-	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQF18099.1|1241500_1241983_-	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
SQF18100.1|1242130_1242445_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	96.2	7.0e-51
SQF18101.1|1242460_1242598_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	95.6	6.4e-17
SQF18102.1|1242599_1242911_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.6	1.4e-43
SQF18103.1|1242988_1243174_-	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQF18104.1|1243340_1243580_+	phage protein	NA	NA	NA	NA	NA
SQF18105.1|1243730_1243940_+	phage protein	NA	NA	NA	NA	NA
SQF18106.1|1243898_1244144_-	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
SQF18107.1|1244192_1244999_+	protein Ymh	NA	A0A1S5SBU1	Streptococcus_phage	82.1	7.9e-123
SQF18108.1|1244933_1245200_-	phage protein	NA	A0A1S5SC19	Streptococcus_phage	66.3	1.1e-23
SQF18109.1|1245210_1245450_-	Cro/CI family phage transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	98.7	1.4e-35
SQF18110.1|1245543_1246143_+	phage protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
SQF18111.1|1246172_1246331_-	phage protein	NA	A0A097PAP2	Streptococcus_pyogenes_phage	100.0	4.8e-24
SQF18112.1|1246427_1246529_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF18113.1|1246703_1247492_+	Phage transcriptional repressor	NA	A0A1S5SD15	Streptococcus_phage	63.0	2.0e-86
SQF18114.1|1247501_1247807_+	phage membrane protein	NA	NA	NA	NA	NA
SQF18115.1|1247929_1249072_+|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
SQF18116.1|1249161_1249437_-	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
1249160:1249179	attR	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQF18117.1|1249535_1250123_-	membrane protein	NA	NA	NA	NA	NA
SQF18118.1|1250100_1250961_-	GDSL family lipase	NA	NA	NA	NA	NA
SQF18119.1|1250935_1251775_-	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
>prophage 11
LS483335	Streptococcus pyogenes strain NCTC8332 genome assembly, chromosome: 1	1921449	1351805	1394421	1921449	portal,transposase,tail,integrase,terminase	Streptococcus_pyogenes_phage(59.02%)	64	1379158:1379173	1394574:1394589
SQF18210.1|1351805_1353161_-	RNA methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	32.7	4.3e-73
SQF18211.1|1353351_1353534_-	paratox	NA	J7KBZ4	Streptococcus_phage	81.4	1.1e-19
SQF18212.1|1353754_1354510_+	exotoxin type A	NA	A0A097PAT7	Streptococcus_pyogenes_phage	100.0	2.2e-143
SQF18213.1|1354631_1355291_-	phage protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	100.0	8.5e-123
SQF18214.1|1355290_1355512_-	phage protein	NA	A0A097PAX7	Streptococcus_pyogenes_phage	84.5	2.5e-18
SQF18215.1|1355521_1356295_-	phage protein	NA	A0A097PAV0	Streptococcus_pyogenes_phage	100.0	3.9e-135
SQF18216.1|1356305_1356908_-	phage protein	NA	A0A097PAX9	Streptococcus_pyogenes_phage	98.8	7.8e-91
SQF18217.1|1356919_1357684_-	phage-associated cell wall hydrolase	NA	A0A097PAT3	Streptococcus_pyogenes_phage	100.0	1.5e-150
SQF18218.1|1357685_1358018_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A097PBF6	Streptococcus_pyogenes_phage	100.0	5.7e-51
SQF18219.1|1358017_1358341_-	phage protein	NA	A0A097PAX2	Streptococcus_pyogenes_phage	100.0	7.7e-53
SQF18220.1|1358354_1358477_-	phage protein	NA	A0A097PAU6	Streptococcus_pyogenes_phage	97.5	2.4e-15
SQF18221.1|1358490_1358838_-	phage protein	NA	A0A097PAX5	Streptococcus_pyogenes_phage	100.0	3.5e-59
SQF18222.1|1358848_1360711_-	phage structural protein	NA	A0A097PAT0	Streptococcus_pyogenes_phage	99.7	0.0e+00
SQF18223.1|1360715_1364156_-	phage protein	NA	A0A097PBF5	Streptococcus_pyogenes_phage	99.9	0.0e+00
SQF18224.1|1364156_1365641_-|tail	siphovirus tail component family protein	tail	A0A097PAW9	Streptococcus_pyogenes_phage	99.8	4.3e-292
SQF18225.1|1365641_1367051_-	phage, tape measure protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	99.4	2.1e-219
SQF18226.1|1367079_1367448_-	phage protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	92.2	5.4e-18
SQF18227.1|1367440_1367899_-	phage protein	NA	A0A097PAX1	Streptococcus_pyogenes_phage	99.3	8.6e-82
SQF18228.1|1367871_1368189_-	phage protein	NA	A0A097PAS6	Streptococcus_pyogenes_phage	100.0	4.9e-52
SQF18229.1|1368201_1368708_-	antigen A	NA	A0A097PBF4	Streptococcus_pyogenes_phage	100.0	2.6e-79
SQF18230.1|1368719_1369130_-	antigen B	NA	A0A097PAW5	Streptococcus_pyogenes_phage	100.0	1.4e-70
SQF18231.1|1369131_1369515_-	antigen C	NA	A0A097PAT9	Streptococcus_pyogenes_phage	100.0	1.7e-59
SQF18232.1|1369523_1369835_-	phage protein	NA	A0A097PAW7	Streptococcus_pyogenes_phage	99.0	2.6e-50
SQF18233.1|1369831_1370176_-	phage protein	NA	A0A097PAS2	Streptococcus_pyogenes_phage	100.0	1.1e-54
SQF18234.1|1370189_1370483_-	phage protein	NA	A0A097PBF3	Streptococcus_pyogenes_phage	100.0	2.0e-47
SQF18235.1|1370495_1371386_-	phage protein	NA	A0A097PAW2	Streptococcus_pyogenes_phage	99.4	8.6e-86
SQF18236.1|1371403_1371976_-	phage scaffold protein	NA	A0A097PAW3	Streptococcus_pyogenes_phage	100.0	1.2e-72
SQF18237.1|1372125_1372392_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	100.0	2.6e-38
SQF18238.1|1372398_1373307_-	phage protein	NA	A0A097PBF2	Streptococcus_pyogenes_phage	100.0	4.2e-88
SQF18239.1|1373275_1374601_-|portal	portal protein	portal	A0A097PAT2	Streptococcus_pyogenes_phage	100.0	7.4e-243
SQF18240.1|1374600_1375875_-|terminase	terminase large subunit	terminase	A0A097PAV9	Streptococcus_pyogenes_phage	100.0	1.1e-251
SQF18241.1|1375864_1376245_-	phage protein	NA	A0A097PAR5	Streptococcus_pyogenes_phage	100.0	1.0e-64
SQF18242.1|1376854_1377289_-	autolysin regulatory protein	NA	J7KDQ1	Streptococcus_phage	94.4	2.2e-71
SQF18243.1|1377573_1377744_-	phage protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	100.0	2.9e-27
SQF18244.1|1377740_1378244_-	phage protein	NA	A0A097PAV5	Streptococcus_pyogenes_phage	98.2	2.2e-91
SQF18245.1|1378530_1378716_-	phage protein	NA	A0A097PBF0	Streptococcus_pyogenes_phage	100.0	7.0e-27
SQF18246.1|1378881_1379217_-	Uncharacterised protein	NA	A0A097PAS4	Streptococcus_pyogenes_phage	100.0	4.7e-45
1379158:1379173	attL	AAATCCCATTATAAAA	NA	NA	NA	NA
SQF18247.1|1379219_1379504_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	91.5	5.0e-40
SQF18248.1|1379500_1379671_-	phage protein	NA	Q938M0	Temperate_phage	96.8	2.5e-10
SQF18249.1|1379667_1380081_-	phage protein	NA	Q938M1	Temperate_phage	63.1	1.2e-34
SQF18250.1|1380077_1380362_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	97.9	2.7e-49
SQF18251.1|1380355_1380607_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	92.8	3.4e-40
SQF18252.1|1380603_1380960_-	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	95.8	1.8e-58
SQF18253.1|1380943_1381264_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	99.1	5.8e-53
SQF18254.1|1381409_1382273_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF18255.1|1382477_1383959_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	99.4	4.2e-295
SQF18256.1|1383948_1384752_-	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	98.9	4.3e-153
SQF18257.1|1384763_1385222_-	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	99.3	5.0e-82
SQF18258.1|1385236_1386466_-	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	99.5	2.8e-236
SQF18259.1|1386567_1387248_-	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQF18260.1|1387248_1387731_-	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
SQF18261.1|1387878_1388193_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	96.2	7.0e-51
SQF18262.1|1388208_1388346_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	91.1	9.2e-16
SQF18263.1|1388376_1388628_-	phage protein	NA	A0A1P8VVV6	Streptococcus_phage	98.8	1.4e-41
SQF18264.1|1388722_1388941_-	Transcriptional regulator, Cro family	NA	A0A1P8VVR5	Streptococcus_phage	100.0	4.1e-34
SQF18265.1|1389129_1389489_+	Transcriptional regulator, MerR family	NA	A0A1P8VVN3	Streptococcus_phage	98.3	1.8e-58
SQF18266.1|1389472_1389850_+	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	100.0	4.0e-69
SQF18267.1|1389860_1390013_+	phage protein	NA	A0A1P8VVQ0	Streptococcus_phage	100.0	5.2e-20
SQF18268.1|1390183_1390870_+	phage protein	NA	A0A1P8VVT3	Streptococcus_phage	99.1	4.8e-121
SQF18269.1|1391043_1391712_+|integrase	phage integrase	integrase	C5J953	Streptococcus_phage	47.2	8.8e-51
SQF18270.1|1391735_1392128_+|integrase	phage integrase	integrase	A0A1S5SEH2	Streptococcus_phage	48.6	1.9e-13
SQF18271.1|1392275_1393052_+	recX family protein	NA	NA	NA	NA	NA
SQF18272.1|1393131_1393665_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF18273.1|1394034_1394421_+|transposase	transposase	transposase	A0A1X9I619	Streptococcus_phage	56.7	2.1e-25
1394574:1394589	attR	TTTTATAATGGGATTT	NA	NA	NA	NA
>prophage 12
LS483335	Streptococcus pyogenes strain NCTC8332 genome assembly, chromosome: 1	1921449	1679401	1750249	1921449	bacteriocin,transposase,protease,tRNA	Synechococcus_phage(11.11%)	58	NA	NA
SQF18534.1|1679401_1680745_-|tRNA	cysteinyl-tRNA synthetase	tRNA	A0A1V0SAQ2	Catovirus	30.1	8.5e-53
SQF18535.1|1680772_1681003_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF18536.1|1681481_1682063_-	serine acetyl transferase	NA	NA	NA	NA	NA
SQF18537.1|1682071_1682824_-	polynucleotide phosphorylase/polyadenylase	NA	NA	NA	NA	NA
SQF18538.1|1685228_1685957_-	translaldolase	NA	H8ZNI7	Synechococcus_phage	33.0	8.4e-15
SQF18539.1|1685969_1687349_-	PTS system ascorbate-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQF18540.1|1687375_1687660_-	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
SQF18541.1|1687652_1689713_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQF18542.1|1690064_1690334_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
SQF18543.1|1690509_1690710_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF18544.1|1691218_1691833_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	38.9	1.3e-13
SQF18545.1|1691866_1692409_-	oxidoreductase	NA	NA	NA	NA	NA
SQF18546.1|1692538_1692967_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
SQF18547.1|1693076_1697474_-	DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	40.8	1.7e-17
SQF18548.1|1697727_1699584_-|tRNA	prolyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	24.6	4.1e-05
SQF18549.1|1699781_1701041_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
SQF18550.1|1701113_1701908_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SQF18551.1|1701920_1702670_-	undecaprenyl pyrophosphate synthase	NA	R9W0U9	Flavobacterium_phage	41.7	9.6e-22
SQF18552.1|1702898_1703264_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
SQF18553.1|1703379_1703727_-|bacteriocin	bacteriocin transporter	bacteriocin	NA	NA	NA	NA
SQF18554.1|1703868_1707366_-	pullulanase	NA	NA	NA	NA	NA
SQF18555.1|1707755_1709363_-	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
SQF18556.1|1709491_1710625_-	Multiple sugar-binding transport ATP-binding protein msmK	NA	G3M9Y6	Bacillus_virus	32.9	1.1e-24
SQF18557.1|1710922_1711771_-	leucine rich protein	NA	NA	NA	NA	NA
SQF18558.1|1712130_1713453_+	streptokinase C	NA	NA	NA	NA	NA
SQF18559.1|1713550_1713994_-|tRNA	D-tyrosyl-tRNA deacylase	tRNA	NA	NA	NA	NA
SQF18560.1|1714008_1716228_-	GTP pyrophosphokinase	NA	A0A1S6L1R3	Vibrio_phage	36.9	1.5e-06
SQF18561.1|1716479_1716755_-	collagen-like protein	NA	NA	NA	NA	NA
SQF18562.1|1716905_1717325_-	collagen-like protein	NA	NA	NA	NA	NA
SQF18563.1|1717725_1718859_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF18564.1|1718863_1718998_+	hupothetical protein	NA	NA	NA	NA	NA
SQF18565.1|1719032_1719515_+	nrdI Flavodoxin like family protein	NA	NA	NA	NA	NA
SQF18566.1|1719909_1720728_-	putative RgfB protein	NA	NA	NA	NA	NA
SQF18567.1|1720806_1722993_-	PTS system, glucose-specific II ABC component	NA	A0A2I7SAJ6	Vibrio_phage	43.0	1.9e-06
SQF18568.1|1723354_1724104_-	16S ribosomal RNA methyltransferase	NA	NA	NA	NA	NA
SQF18569.1|1724103_1725057_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
SQF18570.1|1725127_1725598_-	Protein of uncharacterised function (DUF3013)	NA	NA	NA	NA	NA
SQF18571.1|1725653_1725755_-	RhuM	NA	NA	NA	NA	NA
SQF18572.1|1726291_1727155_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF18573.1|1727298_1727640_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF18574.1|1728436_1730194_+	para-aminobenzoate synthetase componentI/4-amino-4-deoxychorismate lyase	NA	A0A0B5J984	Pandoravirus	30.1	1.2e-38
SQF18575.1|1730226_1730793_+	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.4	4.5e-32
SQF18576.1|1730825_1732094_+	Chromosome segregation helicase	NA	A0A127AWE7	Bacillus_phage	46.9	4.5e-96
SQF18577.1|1732592_1733033_+	acetyltransferase	NA	NA	NA	NA	NA
SQF18578.1|1733087_1733558_+	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	42.3	2.1e-27
SQF18579.1|1733842_1734544_+	mitogenic exotoxin Z	NA	A0EX09	Staphylococcus_phage	36.2	7.3e-16
SQF18580.1|1734870_1735095_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQF18581.1|1735273_1736902_+	Glutathione-binding protein gsiB	NA	NA	NA	NA	NA
SQF18582.1|1737014_1737992_+	oligopeptide ABC transporter (permease)	NA	NA	NA	NA	NA
SQF18583.1|1737988_1738810_+	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	NA	NA	NA	NA	NA
SQF18584.1|1738821_1739625_+	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.9	6.5e-08
SQF18585.1|1739608_1740235_+	Dipeptide transport ATP-binding protein dppF	NA	A0A2H4P6Z4	Pseudomonas_phage	26.1	1.0e-05
SQF18586.1|1740317_1740518_-	CsbD-like protein	NA	J7KJ36	Streptococcus_phage	86.4	1.3e-21
SQF18587.1|1740686_1743158_-	histidine triad protein	NA	NA	NA	NA	NA
SQF18588.1|1743170_1744091_-	Laminin-binding surface protein	NA	NA	NA	NA	NA
SQF18589.1|1744268_1745402_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF18590.1|1745652_1749156_-	C5A peptidase	NA	NA	NA	NA	NA
SQF18591.1|1749589_1750249_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	91.3	1.9e-114
>prophage 13
LS483335	Streptococcus pyogenes strain NCTC8332 genome assembly, chromosome: 1	1921449	1845371	1861090	1921449	tRNA	Streptococcus_phage(61.54%)	22	NA	NA
SQF19145.1|1845371_1846163_-	transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	48.5	7.5e-09
SQF19147.1|1846254_1846488_+	transcriptional regulator	NA	NA	NA	NA	NA
SQF19149.1|1846542_1846950_+	phage protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
SQF19150.1|1846963_1847581_+	pRha family phage regulatory protein	NA	A0A159B6D5	Gordonia_phage	38.8	2.2e-11
SQF19152.1|1847814_1848156_+	phage protein	NA	NA	NA	NA	NA
SQF19155.1|1848142_1848364_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19157.1|1848366_1848558_+	phage protein	NA	NA	NA	NA	NA
SQF19159.1|1848569_1848899_+	phage protein	NA	NA	NA	NA	NA
SQF19161.1|1848901_1849174_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
SQF19163.1|1849174_1850032_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	74.8	4.5e-124
SQF19165.1|1850000_1851689_+	phage/plasmid primase, P4 family, C-terminal domain protein	NA	A0A1X9I717	Streptococcus_phage	82.1	2.5e-259
SQF19167.1|1851975_1852149_+	Uncharacterised protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
SQF19169.1|1852154_1852328_+	phage protein	NA	NA	NA	NA	NA
SQF19171.1|1852329_1852839_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.1e-29
SQF19173.1|1852912_1853401_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
SQF19175.1|1853799_1854162_+	phage protein	NA	A0A2H4JFS1	uncultured_Caudovirales_phage	29.9	1.3e-05
SQF19177.1|1854136_1854520_+	phage protein	NA	Q938L8	Temperate_phage	41.7	3.7e-14
SQF19179.1|1854720_1855383_+	secreted phage protein	NA	NA	NA	NA	NA
SQF19180.1|1855779_1858335_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	23.4	3.0e-43
SQF19182.1|1858321_1858528_-	cytoplasmic protein	NA	NA	NA	NA	NA
SQF19184.1|1858670_1859108_-	arginine repressor	NA	NA	NA	NA	NA
SQF19186.1|1859398_1861090_+|tRNA	arginyl-tRNA synthetase	tRNA	A0A2I2L3K1	Orpheovirus	32.2	7.1e-73
