The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483352	Streptococcus pyogenes strain NCTC12052 genome assembly, chromosome: 1	1857727	36590	48952	1857727		Synechococcus_phage(28.57%)	8	NA	NA
SQF51309.1|36590_40364_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.0	6.1e-40
SQF51310.1|40524_41979_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.9	1.7e-54
SQF51311.1|42006_43029_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.4	9.0e-63
SQF51312.1|43196_43751_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
SQF51313.1|43934_45482_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
SQF51314.1|45540_46665_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQF51315.1|46827_48183_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQF51316.1|48460_48952_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
LS483352	Streptococcus pyogenes strain NCTC12052 genome assembly, chromosome: 1	1857727	88112	104598	1857727	integrase,tRNA	Streptococcus_phage(62.5%)	25	83484:83498	99475:99489
83484:83498	attL	TTTATCAAAAACACA	NA	NA	NA	NA
SQF51361.1|88112_88832_+	ABC transporter	NA	G3M9Y6	Bacillus_virus	26.8	1.3e-15
SQF51362.1|88824_89640_+	zinc ABC transporter permease	NA	NA	NA	NA	NA
SQF51363.1|89679_90063_-	HIT domain-containing protein	NA	NA	NA	NA	NA
SQF51364.1|90226_91372_-|integrase	Phage integrase: site-specific recombinase	integrase	A0A1X9I5Y5	Streptococcus_phage	50.0	5.1e-99
SQF51365.1|92631_93399_-	repressor protein	NA	Q76TK4	Streptococcus_pyogenes_phage	84.9	2.5e-73
SQF51366.1|93552_93759_+	Cro/CI family phage transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
SQF51367.1|93792_93993_+	phage transcriptional repressor	NA	A0A1S5SE31	Streptococcus_phage	55.0	1.0e-10
SQF51368.1|94013_94421_+	phage protein	NA	A0A1X9I5V7	Streptococcus_phage	70.1	7.7e-50
SQF51369.1|94434_95052_+	pRha family phage regulatory protein	NA	A0A159B6D5	Gordonia_phage	38.8	2.2e-11
SQF51370.1|95296_95629_+	phage protein	NA	NA	NA	NA	NA
SQF51371.1|95625_95847_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51372.1|95849_96041_+	phage protein	NA	NA	NA	NA	NA
SQF51373.1|96052_96382_+	phage protein	NA	NA	NA	NA	NA
SQF51374.1|96384_96657_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
SQF51375.1|96657_97515_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	74.5	7.6e-124
SQF51376.1|97483_99172_+	phage/plasmid primase, P4 family, C-terminal domain protein	NA	A0A1X9I717	Streptococcus_phage	82.1	2.5e-259
SQF51377.1|99458_99632_+	phage protein	NA	A0A1X9I5U0	Streptococcus_phage	61.4	3.9e-11
99475:99489	attR	TTTATCAAAAACACA	NA	NA	NA	NA
SQF51378.1|99637_99811_+	phage protein	NA	NA	NA	NA	NA
SQF51379.1|99812_100322_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	62.5	5.5e-29
SQF51380.1|100395_100884_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.3	2.0e-44
SQF51381.1|101289_101652_+	phage protein	NA	A0A2H4JFS1	uncultured_Caudovirales_phage	29.9	3.0e-05
SQF51382.1|101626_102010_+	phage protein	NA	Q938L8	Temperate_phage	42.5	4.9e-14
SQF51383.1|102218_102854_+	phage protein	NA	NA	NA	NA	NA
SQF51384.1|102816_103068_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51385.1|103338_104598_-|tRNA	tyrosyl-tRNA synthetase	tRNA	K4F5T3	Cronobacter_phage	40.0	2.6e-72
>prophage 3
LS483352	Streptococcus pyogenes strain NCTC12052 genome assembly, chromosome: 1	1857727	338198	344232	1857727		Streptococcus_phage(100.0%)	9	NA	NA
SQF51595.1|338198_338834_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	1.2e-65
SQF51596.1|338851_339727_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	44.5	6.3e-65
SQF51597.1|339745_339985_+	Tpl protein	NA	NA	NA	NA	NA
SQF51598.1|340389_340713_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF51599.1|340717_341581_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.3	5.5e-114
SQF51600.1|341607_342000_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF51601.1|342046_342676_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQF51602.1|342974_343331_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.8e-39
SQF51603.1|343404_344232_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.9	1.7e-128
>prophage 4
LS483352	Streptococcus pyogenes strain NCTC12052 genome assembly, chromosome: 1	1857727	352575	433522	1857727	transposase,protease,bacteriocin,tRNA	Bacillus_phage(12.5%)	90	NA	NA
SQF51607.1|352575_354573_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.0	1.3e-86
SQF51608.1|355067_356081_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.7	2.5e-97
SQF51609.1|356084_356573_+	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
SQF51610.1|356539_358720_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.3	2.5e-171
SQF51611.1|358923_359676_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQF51612.1|360133_360538_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF51613.1|360725_360977_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF51614.1|361139_361670_-	phage protein	NA	NA	NA	NA	NA
SQF51615.1|362028_362265_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQF51616.1|362257_362956_+	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.2	1.2e-10
SQF51617.1|363031_363991_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQF51618.1|364323_365661_+	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQF51619.1|365833_367216_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.0	1.4e-31
SQF51620.1|367246_367801_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQF51621.1|367800_368052_+	membrane protein	NA	NA	NA	NA	NA
SQF51622.1|368070_368766_+	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQF51623.1|368916_369258_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51624.1|369357_370005_-	metalloregulator ScaR	NA	NA	NA	NA	NA
SQF51625.1|370150_371083_+	manganese-binding protein	NA	NA	NA	NA	NA
SQF51626.1|371146_371872_+	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.4e-17
SQF51627.1|371872_372727_+	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQF51628.1|372874_373681_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
SQF51629.1|373897_376303_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
SQF51630.1|376372_376726_-	integral membrane protein	NA	NA	NA	NA	NA
SQF51631.1|376969_377395_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQF51632.1|377500_378190_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQF51633.1|378511_379240_+	uridylate kinase	NA	NA	NA	NA	NA
SQF51634.1|379268_379826_+	ribosome recycling factor	NA	NA	NA	NA	NA
SQF51635.1|379934_380792_+	s1 RNA binding domain	NA	NA	NA	NA	NA
SQF51636.1|380864_381374_+	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQF51637.1|381370_381586_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF51638.1|381741_382923_+	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.6e-16
SQF51639.1|383236_385009_+	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQF51640.1|385167_386220_+	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQF51641.1|386265_386841_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQF51642.1|386999_387497_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQF51643.1|387477_387885_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF51644.1|388004_388901_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF51645.1|388921_389398_+	phosphohydrolase	NA	NA	NA	NA	NA
SQF51646.1|389894_390089_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51647.1|390502_390733_+	truncated SilB	NA	NA	NA	NA	NA
SQF51648.1|391228_391939_-|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
SQF51649.1|392043_392280_-|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
SQF51650.1|392577_392802_+	blpU	NA	NA	NA	NA	NA
SQF51651.1|392779_392956_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51652.1|393041_393269_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51653.1|394168_394399_+|bacteriocin	bacteriocin class II with double-glycine leader peptide	bacteriocin	NA	NA	NA	NA
SQF51654.1|394447_394765_+	role in replication	NA	NA	NA	NA	NA
SQF51655.1|395144_395600_+|transposase	transposase	transposase	U5P429	Shigella_phage	34.0	3.8e-13
SQF51656.1|395754_395970_+	Transposase	NA	U5P429	Shigella_phage	45.5	7.0e-10
SQF51657.1|396183_396795_+|transposase	truncated transposase	transposase	A0A1X9I5T2	Streptococcus_phage	91.1	1.1e-103
SQF51658.1|396745_397678_+|transposase	ISSag8, transposase	transposase	A0A1X9I5T2	Streptococcus_phage	88.5	6.8e-142
SQF51659.1|397912_398662_+	response regulator	NA	A0A1V0E029	Clostridioides_phage	28.0	2.1e-21
SQF51660.1|398662_399997_+	two-component system, AgrA family, sensor histidine kinase AgrC	NA	NA	NA	NA	NA
SQF51661.1|400144_400270_-	COMC family	NA	NA	NA	NA	NA
SQF51662.1|400346_401459_-	Transport protein comB	NA	NA	NA	NA	NA
SQF51663.1|401722_403876_-	Bacteriocin processing peptidase / Bacteriocin export ABC transporter	NA	W8CYL7	Bacillus_phage	28.3	5.7e-43
SQF51664.1|404327_404750_+|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
SQF51665.1|404746_404896_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQF51666.1|405201_405447_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF51667.1|405461_405644_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF51668.1|405952_406102_-|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQF51669.1|406098_406521_-|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
SQF51670.1|406838_407066_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQF51671.1|407078_407279_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF51672.1|407817_408099_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51673.1|408292_408694_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51674.1|408947_410015_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51675.1|410116_410506_+	histidine kinase	NA	NA	NA	NA	NA
SQF51676.1|410775_411045_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51677.1|412115_412982_+	transcriptional regulator	NA	NA	NA	NA	NA
SQF51678.1|413153_413981_+	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	5.1e-16
SQF51679.1|413977_414571_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQF51680.1|414760_416263_+	ATPase	NA	A0A248XCZ8	Klebsiella_phage	41.3	1.5e-74
SQF51681.1|416408_417578_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF51682.1|417766_418003_+	preprotein translocase subunit	NA	NA	NA	NA	NA
SQF51683.1|418096_420430_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.6	1.5e-89
SQF51684.1|420432_420900_+	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	57.0	5.7e-41
SQF51685.1|420905_421625_+	glutamine cyclotransferase	NA	NA	NA	NA	NA
SQF51686.1|421741_422389_-	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQF51687.1|422438_423365_-	membrane protein	NA	NA	NA	NA	NA
SQF51688.1|423364_424048_-	membrane protein	NA	NA	NA	NA	NA
SQF51689.1|424258_425185_-	glucosyl transferase family 2	NA	V5USA4	Oenococcus_phage	47.5	3.4e-77
SQF51690.1|425329_425707_-	bleomycin resistance protein	NA	NA	NA	NA	NA
SQF51691.1|425717_426383_-	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA	NA
SQF51692.1|426431_427517_-	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQF51693.1|427690_428692_+	Catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	3.6e-24
SQF51694.1|428822_429821_+	glycosyltransferase	NA	NA	NA	NA	NA
SQF51695.1|429822_431157_+	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
SQF51696.1|431578_433522_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.7	4.7e-121
>prophage 5
LS483352	Streptococcus pyogenes strain NCTC12052 genome assembly, chromosome: 1	1857727	463585	501779	1857727	transposase,portal,tRNA	Streptococcus_phage(25.0%)	39	NA	NA
SQF51726.1|463585_464038_+|portal	portal protein	portal	E4ZFM3	Streptococcus_phage	84.9	5.7e-62
SQF51727.1|464103_464412_+	prophage minor structural protein	NA	Q6DMT0	Streptococcus_phage	64.9	5.7e-21
SQF51728.1|464829_465816_+	huntington interacting protein HYPE	NA	D7RWK9	Brochothrix_phage	24.4	3.2e-09
SQF51729.1|466186_466516_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF51730.1|466658_467033_+|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQF51731.1|467131_467428_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF51732.1|467411_468200_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF51733.1|468357_469572_+	putative transporter	NA	NA	NA	NA	NA
SQF51734.1|469573_470455_+	methyltransferase	NA	NA	NA	NA	NA
SQF51735.1|470444_471446_+	asparagine ligase A	NA	M1PB22	Moumouvirus	33.5	5.2e-23
SQF51736.1|471459_472707_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
SQF51737.1|472934_473651_+	microcin C7 self-immunity protein	NA	NA	NA	NA	NA
SQF51738.1|473663_474875_+|tRNA	histidyl-tRNA synthetase protein HisS	tRNA	NA	NA	NA	NA
SQF51739.1|475247_475604_-	Mobile element protein	NA	U5P429	Shigella_phage	32.8	3.6e-11
SQF51740.1|476097_476373_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF51741.1|476676_477474_+	cof-like hydrolase family protein	NA	NA	NA	NA	NA
SQF51742.1|477477_478302_+	cof-like hydrolase family protein	NA	NA	NA	NA	NA
SQF51743.1|478301_479852_+	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
SQF51744.1|479905_481273_-	multidrug resistance protein B	NA	NA	NA	NA	NA
SQF51745.1|481600_482443_+	Cryptic beta-glucoside bgl operon antiterminator	NA	NA	NA	NA	NA
SQF51746.1|482444_484307_+	PTS system protein	NA	NA	NA	NA	NA
SQF51747.1|484325_485750_+	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
SQF51748.1|485848_486664_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF51749.1|486663_487566_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF51750.1|487713_487869_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQF51751.1|488102_490235_+	transcription accessory protein	NA	NA	NA	NA	NA
SQF51752.1|490712_490985_+	membrane protein	NA	NA	NA	NA	NA
SQF51753.1|491349_492282_+	phosphorylase	NA	NA	NA	NA	NA
SQF51754.1|492278_493058_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
SQF51755.1|493079_493487_+	General stress protein	NA	NA	NA	NA	NA
SQF51756.1|493479_493908_+	gas vesicle protein	NA	NA	NA	NA	NA
SQF51757.1|494067_494352_-	membrane protein	NA	NA	NA	NA	NA
SQF51758.1|494550_495477_+	peptidase	NA	NA	NA	NA	NA
SQF51759.1|495587_496865_+	peptidase, U32 family	NA	Q6DW11	Phage_TP	31.6	7.1e-41
SQF51760.1|497073_497286_+|tRNA	seryl-tRNA synthetase	tRNA	A0A223LEC3	Bacillus_phage	46.9	9.0e-10
SQF51761.1|497658_499152_-|tRNA	lysyl-tRNA synthetase	tRNA	A0A1V0SAC0	Catovirus	40.7	3.3e-90
SQF51762.1|499325_500228_+	putative hydrolase of the HAD superfamily	NA	NA	NA	NA	NA
SQF51763.1|500335_500959_-	phosphoglycerate mutase family protein	NA	NA	NA	NA	NA
SQF51764.1|501299_501779_-|tRNA	ybaK / prolyl-tRNA synthetases associated domain-containing protein	tRNA	NA	NA	NA	NA
>prophage 6
LS483352	Streptococcus pyogenes strain NCTC12052 genome assembly, chromosome: 1	1857727	544530	638286	1857727	protease,tRNA,tail,head,integrase,holin,terminase,capsid,bacteriocin	Temperate_phage(43.1%)	104	541212:541229	612722:612739
541212:541229	attL	ATATCAAAAAGCTTCCCT	NA	NA	NA	NA
SQF51801.1|544530_545877_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.1e-55
SQF51802.1|546290_547181_+	P-loop ATPase protein family protein	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
SQF51803.1|547177_548155_+	transporter	NA	A1IMD5	Streptococcus_phage	74.5	5.6e-139
SQF51804.1|548151_549063_+	sporulation Regulator WhiA C terminal domain-containing protein	NA	Q7AWZ3	Streptococcus_phage	64.7	1.0e-105
SQF51805.1|549195_550593_+	dipeptidase	NA	NA	NA	NA	NA
SQF51806.1|550733_552281_+	high-affinity zinc uptake system protein	NA	NA	NA	NA	NA
SQF51807.1|552427_553150_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF51808.1|553169_554369_+	tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA	NA
SQF51809.1|554465_554726_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQF51810.1|554840_555782_-	DHH family protein	NA	NA	NA	NA	NA
SQF51811.1|556175_556625_+	flavodoxin	NA	NA	NA	NA	NA
SQF51812.1|556808_557093_+	chorismate mutase	NA	NA	NA	NA	NA
SQF51813.1|557085_558348_+	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	51.0	2.9e-95
SQF51814.1|558462_558810_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQF51815.1|559173_560250_-|integrase	prophage LambdaSa1, site-specific recombinase phage integrase family protein	integrase	Q0R5B4	Streptococcus_phage	41.2	2.0e-68
SQF51816.1|560368_560890_-	phage protein	NA	Q938N8	Temperate_phage	97.7	7.5e-66
SQF51817.1|560900_561278_-	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	77.6	1.6e-54
SQF51818.1|561261_561621_-	Transcriptional regulator, MerR family	NA	A0A1P8VVN3	Streptococcus_phage	95.0	1.7e-56
SQF51819.1|561808_562027_+	Transcriptional regulator, Cro family	NA	A0A1P8VVR5	Streptococcus_phage	97.2	5.9e-33
SQF51820.1|562126_562357_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51821.1|562340_562484_+	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	83.7	3.4e-13
SQF51822.1|562493_562712_+	phage protein	NA	NA	NA	NA	NA
SQF51823.1|562713_562956_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51824.1|562942_564259_+	chromosome segregation ATPases	NA	A0A097BY67	Enterococcus_phage	63.8	7.8e-152
SQF51825.1|564273_565356_+	phage protein	NA	A0A0K2CZH1	Paenibacillus_phage	53.3	2.5e-103
SQF51826.1|565394_565529_+	phage protein	NA	NA	NA	NA	NA
SQF51827.1|565550_566144_+	phage protein	NA	A0A097BY29	Enterococcus_phage	43.5	1.7e-29
SQF51828.1|566143_567727_+	DNA/RNA helicase	NA	A0A097BY72	Enterococcus_phage	77.8	2.0e-234
SQF51829.1|567739_567934_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51830.1|567956_570200_+	ATPase	NA	Q5YA88	Bacillus_phage	63.7	4.7e-282
SQF51831.1|570491_570674_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51832.1|570666_571062_+	phage protein	NA	Q5YA86	Bacillus_phage	59.5	4.8e-41
SQF51833.1|571058_571280_+	phage associated protein	NA	NA	NA	NA	NA
SQF51834.1|571282_571555_+	phage protein	NA	A7J287	Streptococcus_phage	58.9	1.2e-17
SQF51835.1|571558_572041_+	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
SQF51836.1|572030_572795_+	Adenine-specific methyltransferase	NA	A0A1S5SE41	Streptococcus_phage	92.3	4.2e-134
SQF51837.1|572885_573179_+	phage protein	NA	A0A097PAR1	Streptococcus_pyogenes_phage	96.9	1.5e-47
SQF51838.1|573175_573274_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51839.1|573634_574072_+	phage protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	100.0	3.6e-77
SQF51840.1|574405_575572_+	adenine methyltransferase	NA	Q708N6	Streptococcus_phage	53.9	7.9e-124
SQF51841.1|575914_576391_+	phage protein	NA	Q938L4	Temperate_phage	68.4	4.9e-48
SQF51842.1|576473_577685_+|terminase	phage terminase	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
SQF51843.1|577698_579201_+|capsid	Minor capsid protein	capsid	Q938L2	Temperate_phage	99.6	5.9e-281
SQF51844.1|579205_580699_+|capsid	phage minor capsid 2 family protein	capsid	Q938L1	Temperate_phage	80.8	2.1e-214
SQF51845.1|580698_580926_+	phage protein	NA	NA	NA	NA	NA
SQF51846.1|581012_581279_+	secreted phage protein	NA	Q938K9	Temperate_phage	95.5	8.3e-37
SQF51847.1|581410_582019_+	phage protein	NA	Q938K8	Temperate_phage	95.0	4.0e-95
SQF51848.1|582022_582841_+|head	putative major head protein	head	Q79S85	Temperate_phage	100.0	4.0e-146
SQF51849.1|582894_583311_+	phage protein	NA	Q938K7	Temperate_phage	98.2	2.8e-55
SQF51850.1|583300_583633_+|capsid	minor capsid protein - phage associated	capsid	Q79S86	Temperate_phage	98.2	1.1e-57
SQF51851.1|583632_583989_+	phage protein	NA	Q79S88	Temperate_phage	100.0	4.5e-62
SQF51852.1|583985_584384_+|capsid	minor capsid protein	capsid	Q79S87	Temperate_phage	100.0	3.5e-71
SQF51853.1|584383_584869_+|tail	major tail shaft protein	tail	Q938K6	Temperate_phage	100.0	1.6e-86
SQF51854.1|584907_585342_+	phage protein	NA	Q938K5	Temperate_phage	99.3	2.9e-71
SQF51855.1|585345_585927_+	bacteriophage Gp15 family protein	NA	Q938K4	Temperate_phage	98.4	1.6e-104
SQF51856.1|585916_589177_+	phage protein	NA	Q938K3	Temperate_phage	98.6	0.0e+00
SQF51857.1|589173_589890_+	phage protein	NA	Q938K2	Temperate_phage	98.7	5.5e-136
SQF51858.1|589886_592031_+	Phage endopeptidase	NA	Q938K1	Temperate_phage	95.7	0.0e+00
SQF51859.1|592027_593032_+	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	62.7	5.3e-108
SQF51860.1|593046_594933_+	phage protein	NA	Q938J9	Temperate_phage	86.5	4.6e-222
SQF51861.1|594944_595376_+	phage protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
SQF51862.1|595378_595996_+	phage protein	NA	Q938J7	Temperate_phage	88.8	1.7e-77
SQF51863.1|596005_596281_+|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQF51864.1|596277_596505_+	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	5.8e-31
SQF51865.1|596620_597823_+	phage associated protein	NA	Q938J4	Temperate_phage	97.5	1.8e-235
SQF51866.1|598189_598732_+	phage protein	NA	Q938J3	Temperate_phage	51.1	2.2e-44
SQF51867.1|598735_599572_+	hypothetical phage membrane protein	NA	Q938J2	Temperate_phage	52.3	4.3e-63
SQF51868.1|599639_599996_-	phage protein	NA	NA	NA	NA	NA
SQF51869.1|599997_600471_-	Uncharacterised protein	NA	A3F671	Streptococcus_phage	94.3	8.0e-83
SQF51870.1|600509_600749_-	Phage protein	NA	NA	NA	NA	NA
SQF51871.1|600951_601131_+	Paratox	NA	A3F673	Streptococcus_phage	77.6	3.4e-18
SQF51872.1|601076_601193_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF51873.1|601203_601425_-	DNA integration/recombination/inversion protein	NA	NA	NA	NA	NA
SQF51874.1|601952_602522_+	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA	NA
SQF51875.1|602522_604475_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	46.3	8.9e-144
SQF51876.1|604831_606556_+	septation ring formation regulator	NA	NA	NA	NA	NA
SQF51877.1|606687_607146_-	hypothetical cytosolic protein	NA	W6LLD2	Streptococcus_phage	39.1	1.8e-18
SQF51878.1|607378_608686_+	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
SQF51879.1|609360_609522_+|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
SQF51880.1|609743_610694_+	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQF51881.1|610690_611749_+|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
SQF51882.1|611768_613127_+|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
612722:612739	attR	ATATCAAAAAGCTTCCCT	NA	NA	NA	NA
SQF51883.1|613101_613773_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF51884.1|613769_614453_+	streptolysin S biosynthesis protein SagF	NA	NA	NA	NA	NA
SQF51885.1|614475_615399_+	ABC transporter family protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	38.1	6.7e-33
SQF51886.1|615407_616535_+	ABC transporter	NA	NA	NA	NA	NA
SQF51887.1|616531_617650_+	ABC transporter	NA	NA	NA	NA	NA
SQF51888.1|618220_620953_+	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
SQF51889.1|621924_623883_+	NAD-dependent DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	34.9	7.6e-103
SQF51890.1|623896_624919_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	27.9	3.6e-19
SQF51891.1|625310_625508_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
SQF51892.1|625542_626259_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
SQF51893.1|626276_626771_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
SQF51894.1|626770_627307_+	ATP synthase delta chain	NA	NA	NA	NA	NA
SQF51895.1|627322_628831_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
SQF51896.1|628846_629722_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
SQF51897.1|629883_631290_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
SQF51898.1|631302_631719_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
SQF51899.1|631984_632242_+	membrane protein	NA	NA	NA	NA	NA
SQF51900.1|632306_633578_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF51901.1|633581_633770_+	epuA protein	NA	NA	NA	NA	NA
SQF51902.1|633805_634345_+	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQF51903.1|634594_635671_+|tRNA	phenylalanyl-tRNA synthetase alpha subunit	tRNA	A0A2K9L3A8	Tupanvirus	34.3	4.7e-30
SQF51904.1|635880_638286_+|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
>prophage 7
LS483352	Streptococcus pyogenes strain NCTC12052 genome assembly, chromosome: 1	1857727	673697	684301	1857727		Streptococcus_phage(57.14%)	9	NA	NA
SQF51937.1|673697_675908_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.2	2.9e-268
SQF51938.1|676015_677179_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	64.9	7.6e-143
SQF51939.1|677175_677862_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF51940.1|677955_679122_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF51941.1|679182_679524_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	5.9e-19
SQF51942.1|679744_681097_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.8	1.0e-29
SQF51943.1|681176_682454_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF51944.1|682483_682924_-	membrane protein	NA	NA	NA	NA	NA
SQF51945.1|683158_684301_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.0	4.1e-24
>prophage 8
LS483352	Streptococcus pyogenes strain NCTC12052 genome assembly, chromosome: 1	1857727	711249	747603	1857727	transposase,head,protease,tRNA	Bacillus_phage(25.0%)	34	NA	NA
SQF51970.1|711249_711981_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQF51971.1|711980_712973_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
SQF51972.1|713150_714209_+	regulatory protein	NA	NA	NA	NA	NA
SQF51973.1|714221_715145_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQF51974.1|715445_716114_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.7	2.2e-17
SQF51975.1|716110_717022_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQF51976.1|717018_718965_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQF51977.1|719063_719657_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.5e-11
SQF51978.1|719808_720516_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	1.9e-11
SQF51979.1|720671_720791_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQF51980.1|721472_722498_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQF51981.1|723000_723177_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF51982.1|723405_723786_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF51983.1|723785_724634_+	degV family protein	NA	NA	NA	NA	NA
SQF51984.1|724758_725967_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	5.3e-38
SQF51985.1|725963_727841_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.5	1.1e-63
SQF51986.1|728730_729141_+	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF51987.1|729222_731235_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQF51988.1|731454_732105_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF51989.1|732107_732776_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF51990.1|732784_734017_+	two component system histidine kinase	NA	NA	NA	NA	NA
SQF51991.1|734310_735189_+	mevalonate kinase	NA	NA	NA	NA	NA
SQF51992.1|735170_736115_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF51993.1|736107_737121_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF51994.1|737107_738097_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF51995.1|738326_739604_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF51996.1|739590_740766_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF51997.1|740980_741820_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQF51998.1|741899_742397_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQF51999.1|742416_742587_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF52000.1|742716_743946_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	3.0e-137
SQF52001.1|743955_744555_+	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQF52002.1|744702_745446_+	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQF52003.1|745503_747603_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.1	9.6e-120
>prophage 9
LS483352	Streptococcus pyogenes strain NCTC12052 genome assembly, chromosome: 1	1857727	985508	1153043	1857727	protease,tRNA,tail,portal,integrase,holin,terminase,capsid,transposase	Streptococcus_phage(42.86%)	182	1018875:1018934	1157580:1157596
SQF52228.1|985508_986393_-|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
SQF52229.1|986508_987849_-	Serine/threonine-protein kinase MRCK beta	NA	NA	NA	NA	NA
SQF52230.1|987954_988911_-	membrane protein	NA	NA	NA	NA	NA
SQF52231.1|988921_989518_-	type I restriction-modification system specificty subunit	NA	NA	NA	NA	NA
SQF52232.1|989609_992246_-	permease family protein	NA	NA	NA	NA	NA
SQF52233.1|992260_992962_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	4.9e-36
SQF52234.1|993079_993622_+	bacterial regulatory s, tetR family protein	NA	NA	NA	NA	NA
SQF52235.1|993764_994406_-	bacterial regulatory s, gntR family protein	NA	NA	NA	NA	NA
SQF52236.1|994568_995057_-	general stress protein, Gls24 family	NA	NA	NA	NA	NA
SQF52237.1|995067_995268_-	csbD-like family protein	NA	J7KJ36	Streptococcus_phage	50.0	1.8e-07
SQF52238.1|995308_995848_-	response regulator	NA	NA	NA	NA	NA
SQF52239.1|995860_996049_-	membrane protein	NA	NA	NA	NA	NA
SQF52240.1|996059_996647_-	membrane protein	NA	NA	NA	NA	NA
SQF52241.1|996707_996956_-	transglycosylase associated family protein	NA	NA	NA	NA	NA
SQF52242.1|997318_999637_-	DNA helicase II / ATP-dependent DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.2	3.5e-131
SQF52243.1|1000166_1001489_+	amino acid symporter	NA	NA	NA	NA	NA
SQF52244.1|1001608_1002844_+	cation diffusion facilitator transporter family protein	NA	NA	NA	NA	NA
SQF52245.1|1003213_1003987_-	protein B	NA	NA	NA	NA	NA
SQF52246.1|1004356_1005193_-	polar amino acid ABC uptake transporter substrate binding protein	NA	NA	NA	NA	NA
SQF52247.1|1005208_1005838_-	histidine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	9.8e-28
SQF52248.1|1005847_1006489_-	histidine transporter permease	NA	NA	NA	NA	NA
SQF52249.1|1006595_1006931_-	phosphonoacetate hydrolase	NA	NA	NA	NA	NA
SQF52250.1|1007126_1008941_-	glucosamine-fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.9	5.2e-98
SQF52251.1|1009116_1009674_-	signal peptidase I	NA	NA	NA	NA	NA
SQF52252.1|1009891_1011394_-	pyruvate kinase	NA	NA	NA	NA	NA
SQF52253.1|1011456_1012470_-	6-phosphofructokinase	NA	NA	NA	NA	NA
SQF52254.1|1012549_1015660_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.8	1.4e-119
SQF52255.1|1015844_1016216_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF52256.1|1016215_1016914_+	ABC transporter family protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
SQF52257.1|1016923_1017709_+	ABC transporter permease protein	NA	NA	NA	NA	NA
SQF52258.1|1017839_1018454_-	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
1018875:1018934	attL	ACTCCCACCAGCTCCATCAATGCTTACCGTAAGTAATCATAACTTACTAAAACCTTGTTA	NA	NA	NA	NA
SQF52259.1|1019044_1019233_-	phage protein	NA	A3F673	Streptococcus_phage	84.7	1.2e-21
1018875:1018934	attL	ACTCCCACCAGCTCCATCAATGCTTACCGTAAGTAATCATAACTTACTAAAACCTTGTTA	NA	NA	NA	NA
SQF52260.1|1019347_1020136_-	exotoxin M precursor	NA	Q938J1	Temperate_phage	41.4	1.2e-46
SQF52261.1|1020417_1021131_-	mitogen	NA	Q938J1	Temperate_phage	59.5	9.0e-78
SQF52262.1|1021514_1022108_-	phage protein	NA	A0A0A8WFI2	Clostridium_phage	38.2	2.4e-23
SQF52263.1|1022107_1022272_-	phage protein	NA	NA	NA	NA	NA
SQF52264.1|1022420_1023065_-	bacterial SH3 domain protein	NA	Q938J4	Temperate_phage	78.6	3.6e-94
SQF52265.1|1023174_1023867_-	AP2 domain protein	NA	A0A2H4J2S8	uncultured_Caudovirales_phage	34.2	1.5e-32
SQF52266.1|1024099_1024657_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	A7J2B5	Streptococcus_phage	85.9	1.0e-92
SQF52267.1|1024653_1024764_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.2	1.8e-09
SQF52268.1|1024772_1025000_-	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQF52269.1|1024996_1025272_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQF52270.1|1025281_1025899_-	phage protein	NA	A3F662	Streptococcus_phage	90.2	5.7e-81
SQF52271.1|1025901_1026330_-	phage protein	NA	A3F661	Streptococcus_phage	92.9	3.0e-68
SQF52272.1|1026341_1027415_-	Phage infection protein	NA	Q938J9	Temperate_phage	74.5	3.2e-135
SQF52273.1|1027362_1028247_-	phage infection protein	NA	A7J2A9	Streptococcus_phage	85.8	1.3e-65
SQF52274.1|1028261_1028942_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	98.2	8.5e-118
SQF52275.1|1029271_1031416_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	94.0	0.0e+00
SQF52276.1|1031412_1032120_-	phage protein	NA	Q938K2	Temperate_phage	71.1	1.7e-92
SQF52277.1|1032119_1036043_-|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	50.0	1.1e-249
SQF52278.1|1036055_1036223_-	phage protein	NA	J7KBS0	Streptococcus_phage	87.3	2.9e-19
SQF52279.1|1036252_1036579_-	phage protein	NA	J7KK85	Streptococcus_phage	73.1	6.0e-37
SQF52280.1|1036631_1037240_-|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	70.5	2.3e-74
SQF52281.1|1037256_1037682_-	phage protein	NA	J7KBZ9	Streptococcus_phage	85.1	5.0e-68
SQF52282.1|1037678_1038056_-	phage protein	NA	J7KDM3	Streptococcus_phage	72.8	1.4e-45
SQF52283.1|1038052_1038400_-	phage protein	NA	J7KJ42	Streptococcus_phage	84.5	4.2e-49
SQF52284.1|1038396_1038699_-	phage protein	NA	J7KC36	Streptococcus_phage	88.0	4.7e-44
SQF52285.1|1038834_1040037_-|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	64.7	2.7e-135
SQF52286.1|1040062_1040728_-|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	77.2	2.3e-91
SQF52287.1|1040705_1041926_-|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.9	9.0e-187
SQF52288.1|1041959_1042184_-	phage protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
SQF52289.1|1042176_1042347_-	phage protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
SQF52290.1|1042343_1044092_-|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	96.0	0.0e+00
SQF52291.1|1044101_1044332_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF52292.1|1044334_1044802_-|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
SQF52293.1|1044972_1045311_-	Phage endonuclease	NA	J7KH36	Streptococcus_phage	97.2	2.4e-57
SQF52294.1|1045560_1046001_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	100.0	5.0e-79
SQF52295.1|1046273_1046909_-	phage protein	NA	L0P368	Streptococcus_phage	67.0	3.0e-85
SQF52296.1|1046908_1047097_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF52297.1|1047163_1047310_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF52298.1|1047407_1047635_-	phage protein	NA	A3F630	Streptococcus_phage	76.0	4.3e-26
SQF52299.1|1047638_1048061_-	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	100.0	2.1e-50
SQF52300.1|1048044_1048395_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	87.5	2.2e-45
SQF52301.1|1048348_1049218_-	phage protein	NA	A0A1P8BME8	Lactococcus_phage	65.6	5.8e-103
SQF52302.1|1049486_1051040_-	bacteriophage resistance protein	NA	A0A1P8BM51	Lactococcus_phage	70.6	1.5e-210
SQF52303.1|1051057_1051540_-	phage protein	NA	A0A1P8BM40	Lactococcus_phage	70.7	1.7e-59
SQF52304.1|1051544_1052909_-	DEAD/DEAH box helicase	NA	A0A1P8BMH7	Lactococcus_phage	72.1	3.8e-194
SQF52305.1|1052983_1053667_-	phage protein	NA	J7KC09	Streptococcus_phage	98.2	4.6e-124
SQF52306.1|1053663_1053948_-	phage protein	NA	NA	NA	NA	NA
SQF52307.1|1053944_1054139_-	phage protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
SQF52308.1|1054138_1054468_-	phage protein	NA	J7KBZ0	Streptococcus_phage	41.8	7.9e-13
SQF52309.1|1054451_1054565_-	Uncharacterised protein	NA	A0A097PAT6	Streptococcus_pyogenes_phage	77.8	2.0e-08
SQF52310.1|1054548_1054686_-	phage protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	100.0	3.4e-18
SQF52311.1|1054682_1054979_-	phage protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	98.0	3.1e-48
SQF52312.1|1055057_1055243_-	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQF52313.1|1055409_1055649_+	phage protein	NA	NA	NA	NA	NA
SQF52314.1|1055798_1056008_+	phage protein	NA	NA	NA	NA	NA
SQF52315.1|1055966_1056212_-	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
SQF52316.1|1056223_1056463_-	Cro/CI family phage transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	97.5	3.1e-35
SQF52317.1|1056536_1057019_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF52318.1|1057015_1057162_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF52319.1|1057218_1058004_+	Uncharacterised protein	NA	A0A1S5S7L0	Streptococcus_phage	57.4	4.8e-48
SQF52320.1|1057939_1058104_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF52321.1|1058137_1058296_-	phage protein	NA	J7KH24	Streptococcus_phage	92.3	3.4e-22
SQF52322.1|1058469_1059258_+	Phage transcriptional repressor	NA	A0A1S5SD15	Streptococcus_phage	62.6	2.9e-85
SQF52323.1|1059267_1059573_+	phage membrane protein	NA	NA	NA	NA	NA
SQF52324.1|1059692_1060781_+|integrase	integrase	integrase	Q38159	Streptococcus_phage	98.6	3.0e-202
SQF52325.1|1061143_1061764_+	phage protein	NA	NA	NA	NA	NA
1060824:1060919	attR	ACTCCCACCAGCTCCATCAATGCTTACCGTAAGTAATCATAACTTACTAAAACCTTGTTACATCAAGGTTTTTTCTTTTTGTCTTGTTCATGAGTT	NA	NA	NA	NA
SQF52326.1|1062020_1064285_-	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
1060824:1060919	attR	ACTCCCACCAGCTCCATCAATGCTTACCGTAAGTAATCATAACTTACTAAAACCTTGTTACATCAAGGTTTTTTCTTTTTGTCTTGTTCATGAGTT	NA	NA	NA	NA
SQF52327.1|1064319_1065813_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
SQF52328.1|1065926_1066946_-	LacI family transcription regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
SQF52329.1|1067188_1068436_+	maltose/maltodextrin-binding protein	NA	NA	NA	NA	NA
SQF52330.1|1068709_1070071_+	maltose/maltodextrin ABC transport system permease	NA	NA	NA	NA	NA
SQF52331.1|1070070_1070907_+	maltose transport system permease	NA	NA	NA	NA	NA
SQF52332.1|1071087_1071339_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF52333.1|1071280_1071868_+|transposase	truncated transposase	transposase	Q9MBM9	Staphylococcus_prophage	39.6	5.4e-28
SQF52334.1|1072381_1073365_-	alpha/beta fold family hydrolase	NA	NA	NA	NA	NA
SQF52335.1|1073395_1074646_-	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA	NA
SQF52336.1|1074638_1074878_-	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
SQF52337.1|1074895_1076152_-	Protein dltB	NA	NA	NA	NA	NA
SQF52338.1|1076148_1077687_-	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	28.0	1.9e-40
SQF52339.1|1077698_1077842_-	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA	NA
SQF52340.1|1078104_1080096_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
SQF52341.1|1080288_1082463_+	glutamine-binding protein/glutamine transpor tsystem permease protein	NA	NA	NA	NA	NA
SQF52342.1|1082462_1083203_+	glutamine transport ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	42.1	1.5e-35
SQF52343.1|1083350_1083503_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF52344.1|1083499_1084879_-	PTS system cellobiose-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQF52345.1|1085056_1085506_-	Domain of uncharacterised function (DUF3284)	NA	NA	NA	NA	NA
SQF52346.1|1085502_1085838_-	PTS system cellobiose-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQF52347.1|1085840_1086152_-	PTS system cellobiose-specific component IIB	NA	NA	NA	NA	NA
SQF52348.1|1086174_1088169_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQF52349.1|1088274_1089369_-	outer surface protein	NA	NA	NA	NA	NA
SQF52350.1|1089377_1090778_-	beta-glucosidase	NA	NA	NA	NA	NA
SQF52351.1|1091002_1091698_+	nicotinamide mononucleotide transporter	NA	NA	NA	NA	NA
SQF52352.1|1091702_1091861_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF52353.1|1091929_1093243_-	GTPase ObgE	NA	NA	NA	NA	NA
SQF52354.1|1093300_1093429_-	membrane protein	NA	NA	NA	NA	NA
SQF52355.1|1093670_1094186_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF52356.1|1094206_1095013_+|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	49.3	1.2e-62
SQF52357.1|1095312_1096185_-	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQF52358.1|1096408_1097719_+	membrane protein	NA	NA	NA	NA	NA
SQF52359.1|1097796_1098090_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF52360.1|1098233_1098692_+|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	39.3	1.9e-20
SQF52361.1|1098861_1099593_-	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQF52362.1|1099706_1100072_+	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQF52363.1|1100191_1101412_-	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQF52364.1|1101785_1103270_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF52365.1|1103374_1103776_-	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQF52366.1|1103860_1104100_-	phosphorylase Pnp/Udp family protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	96.2	4.4e-37
SQF52367.1|1104790_1106149_-|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	F5CA72	Streptococcus_phi-m46.1-like_phage	98.7	4.3e-254
SQF52368.1|1106230_1107682_-	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQF52369.1|1107889_1108381_-	shikimate kinase	NA	NA	NA	NA	NA
SQF52370.1|1108373_1109657_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF52371.1|1109767_1110733_-	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQF52372.1|1110734_1111595_-	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQF52373.1|1111610_1112894_-	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQF52374.1|1112902_1113445_-	acetyltransferase family protein	NA	NA	NA	NA	NA
SQF52375.1|1114132_1114252_-	protein G-related alpha 2M-bindingprotein	NA	NA	NA	NA	NA
SQF52376.1|1114608_1115868_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF52377.1|1116041_1117238_-	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.9	5.3e-139
SQF52378.1|1117773_1120131_-	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
SQF52379.1|1120334_1121276_+	biotin-protein ligase	NA	NA	NA	NA	NA
SQF52380.1|1121549_1123220_-	DNA polymerase III subunits gamma and tau	NA	E7DN81	Pneumococcus_phage	40.6	5.1e-47
SQF52381.1|1123219_1123717_-	GAF domain-containing protein	NA	NA	NA	NA	NA
SQF52382.1|1123861_1124671_+	membrane protein	NA	NA	NA	NA	NA
SQF52383.1|1124723_1124987_-	membrane protein	NA	NA	NA	NA	NA
SQF52384.1|1125066_1125693_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	2.2e-35
SQF52385.1|1125790_1126876_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.6e-33
SQF52386.1|1126985_1128260_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQF52387.1|1128354_1129782_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQF52388.1|1129966_1131700_-	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQF52389.1|1131704_1131968_-	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQF52390.1|1132360_1132579_+	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
SQF52391.1|1132598_1134758_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.4	6.1e-263
SQF52392.1|1135090_1136050_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.5	3.7e-127
SQF52393.1|1136024_1137338_+	chloride channel protein	NA	NA	NA	NA	NA
SQF52394.1|1137433_1137727_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF52395.1|1137759_1138056_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	42.0	6.5e-06
SQF52396.1|1138158_1138329_+|integrase	integrase	integrase	U5P429	Shigella_phage	48.1	1.5e-07
SQF52397.1|1138368_1138590_+|transposase	transposase	transposase	U5P429	Shigella_phage	42.9	7.2e-10
SQF52398.1|1138681_1139377_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF52399.1|1139395_1140157_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF52400.1|1140153_1140369_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQF52401.1|1140729_1143348_-|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	34.1	1.1e-61
SQF52402.1|1143734_1144790_-	foldase protein prsA 1	NA	NA	NA	NA	NA
SQF52403.1|1144852_1145524_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	2.4e-08
SQF52404.1|1145625_1146822_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF52405.1|1147197_1149003_-	oligoendopeptidase F	NA	NA	NA	NA	NA
SQF52406.1|1149015_1149978_-	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQF52407.1|1150273_1150990_-	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQF52408.1|1151108_1151813_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQF52409.1|1152014_1153043_+|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
1157580:1157596	attR	AAAAAGCTGCACTAGAA	NA	NA	NA	NA
>prophage 10
LS483352	Streptococcus pyogenes strain NCTC12052 genome assembly, chromosome: 1	1857727	1177556	1217555	1857727	tail,head,terminase,integrase	Streptococcus_phage(68.63%)	61	1179761:1179780	1214940:1214959
SQF52434.1|1177556_1179419_-	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	33.8	2.4e-90
1179761:1179780	attL	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQF52435.1|1179949_1180132_-	paratox	NA	A3F673	Streptococcus_phage	80.0	1.7e-20
SQF52436.1|1180371_1181130_+	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQF52437.1|1181240_1181948_+	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
SQF52438.1|1182016_1183234_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8VVM5	Streptococcus_phage	60.1	1.1e-163
SQF52439.1|1183227_1183344_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.1	7.0e-09
SQF52440.1|1183352_1183580_-	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQF52441.1|1183576_1183849_-	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQF52442.1|1183860_1184493_-	phage protein	NA	Q938J7	Temperate_phage	50.5	1.2e-44
SQF52443.1|1184495_1184924_-	phage protein	NA	Q938J8	Temperate_phage	87.9	3.7e-63
SQF52444.1|1184932_1186714_-	gp58-like family protein	NA	Q938J9	Temperate_phage	40.2	1.5e-65
SQF52445.1|1186728_1187742_-	phage hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	91.1	2.7e-168
SQF52446.1|1187741_1189700_-	phage endopeptidase	NA	M1PKG3	Streptococcus_phage	48.7	3.4e-95
SQF52447.1|1189696_1190392_-	phage protein	NA	A0A1B1P761	Bacillus_phage	32.2	4.7e-07
SQF52448.1|1190388_1192752_-|tail	minor tail protein GP26	tail	M1NRG5	Streptococcus_phage	50.1	2.5e-132
SQF52449.1|1192751_1193123_-	phage protein	NA	M1PL84	Streptococcus_phage	62.4	1.7e-35
SQF52450.1|1193137_1193401_-	phage protein	NA	A0A0B5A2F3	Streptococcus_phage	55.8	1.0e-18
SQF52451.1|1193411_1194002_-|tail	major tail protein	tail	M1PKG8	Streptococcus_phage	62.5	1.1e-60
SQF52452.1|1194017_1194353_-	phage protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	9.8e-35
SQF52453.1|1194353_1194590_-	phage protein	NA	A0A1P8BMT2	Lactococcus_phage	66.7	2.5e-21
SQF52454.1|1194582_1194921_-	phage protein	NA	A0A0B5A086	Streptococcus_phage	75.0	8.1e-45
SQF52455.1|1194880_1195303_-	phage Gp19/Gp15/Gp42 family protein	NA	A0A0B5A2F6	Streptococcus_phage	67.2	8.2e-47
SQF52456.1|1195312_1195513_-	phage protein	NA	NA	NA	NA	NA
SQF52457.1|1195512_1196424_-|head	phage, major head protein	head	M1PFL0	Streptococcus_phage	67.0	2.9e-113
SQF52458.1|1196448_1196910_-	phage protein	NA	M1Q1L0	Streptococcus_phage	53.2	4.5e-38
SQF52459.1|1196990_1198406_-|terminase	phage terminase	terminase	A0A0B5A091	Streptococcus_phage	74.0	1.5e-212
SQF52460.1|1198487_1198703_-	phage protein	NA	M1IRA5	Streptococcus_phage	72.4	4.1e-26
SQF52461.1|1198704_1198971_-	secreted phage protein	NA	Q938K9	Temperate_phage	95.5	6.4e-37
SQF52462.1|1198963_1199116_-	phage protein	NA	NA	NA	NA	NA
SQF52463.1|1199192_1199417_-	phage protein	NA	NA	NA	NA	NA
SQF52464.1|1199422_1200916_-	phage protein	NA	M1Q184	Streptococcus_phage	55.0	2.0e-87
SQF52465.1|1200908_1202177_-	structural phage protein	NA	M1PFL4	Streptococcus_phage	75.6	2.2e-188
SQF52466.1|1202173_1202530_-	phage protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
SQF52467.1|1203129_1203549_-	phage protein	NA	A0A1X9I5B5	Streptococcus_phage	79.9	6.7e-57
SQF52468.1|1203624_1203876_-	phage protein	NA	M1PF60	Streptococcus_phage	59.0	1.6e-18
SQF52469.1|1203872_1204028_-	phage protein	NA	NA	NA	NA	NA
SQF52470.1|1204024_1204342_-	phage protein	NA	A1EAD7	Streptococcus_phage	71.4	9.0e-30
SQF52471.1|1204377_1204890_-	lactococcus phage M3 family protein	NA	M1PFM2	Streptococcus_phage	85.9	1.7e-78
SQF52472.1|1204886_1205219_-	phage protein	NA	M1NS23	Streptococcus_phage	67.0	8.8e-36
SQF52473.1|1205229_1206576_-	PcfJ	NA	A8ATM0	Listeria_phage	49.4	1.0e-122
SQF52474.1|1206572_1206968_-	phage protein	NA	A8ATL9	Listeria_phage	52.3	1.4e-19
SQF52475.1|1207118_1207211_-	phage protein	NA	A0A1S5SCN4	Streptococcus_phage	70.0	3.7e-05
SQF52476.1|1207332_1208130_-	phage protein	NA	J7KGZ1	Streptococcus_phage	84.5	4.1e-132
SQF52477.1|1208122_1208323_-	phage protein	NA	NA	NA	NA	NA
SQF52478.1|1208319_1209246_-	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
SQF52479.1|1209248_1209578_-	phage protein	NA	J7KGX3	Streptococcus_phage	84.4	7.1e-46
SQF52480.1|1209633_1209840_-	phage protein	NA	NA	NA	NA	NA
SQF52481.1|1209848_1209989_-	phage protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
SQF52482.1|1209985_1210219_-	phage protein	NA	Q938N1	Temperate_phage	96.1	2.8e-36
SQF52483.1|1210199_1210586_-	phage DNA replication protein	NA	Q938N2	Temperate_phage	51.9	8.1e-25
SQF52484.1|1211119_1211305_-	phage protein	NA	Q938N3	Temperate_phage	83.6	1.3e-20
SQF52485.1|1211306_1211618_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	77.7	5.3e-43
SQF52486.1|1211715_1211847_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF52487.1|1211887_1212100_-	helix-turn-helix family protein	NA	A0A1X9I583	Streptococcus_phage	56.7	1.1e-10
SQF52488.1|1212301_1213057_+	Cro/CI family transcriptional regulator	NA	A0A1S5S8S8	Streptococcus_phage	60.8	2.8e-77
SQF52489.1|1213068_1213587_+	HIRAN domain protein	NA	E8ZDN5	Streptococcus_phage	45.9	9.2e-32
SQF52490.1|1213710_1214853_+|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
SQF52491.1|1214941_1215217_-	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
1214940:1214959	attR	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQF52492.1|1215315_1215903_-	membrane protein	NA	NA	NA	NA	NA
SQF52493.1|1215880_1216741_-	GDSL family lipase	NA	NA	NA	NA	NA
SQF52494.1|1216715_1217555_-	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
>prophage 11
LS483352	Streptococcus pyogenes strain NCTC12052 genome assembly, chromosome: 1	1857727	1712595	1750870	1857727	protease,tail,head,portal,integrase,terminase,capsid	Streptococcus_phage(82.98%)	51	1716475:1716500	1748157:1748182
SQF52933.1|1712595_1715040_-	clp amino terminal domain-containing protein	NA	A0A223W0B1	Agrobacterium_phage	39.2	5.4e-122
SQF52934.1|1715039_1715501_-	transcriptional regulator	NA	NA	NA	NA	NA
1716475:1716500	attL	ATTTGCCCACCATTTGCCCACCAACT	NA	NA	NA	NA
SQF52935.1|1716498_1717569_-|integrase	integrase	integrase	A0A1P8VVR7	Streptococcus_phage	48.3	9.6e-92
SQF52936.1|1717696_1717999_-	putative lipoprotein	NA	A0A1S5SAH9	Streptococcus_phage	53.6	1.5e-21
SQF52937.1|1717991_1718378_-	phage protein	NA	Q938N7	Temperate_phage	61.6	2.4e-37
SQF52938.1|1718381_1718732_-	repressor - phage associated	NA	A0A1S5S8C4	Streptococcus_phage	70.6	8.1e-40
SQF52939.1|1719128_1719338_+	putative phage DNA binding protein	NA	A0A1P8VVQ4	Streptococcus_phage	88.2	3.0e-26
SQF52940.1|1719337_1719700_+	phage protein	NA	A0A1P8VVU1	Streptococcus_phage	68.8	6.6e-37
SQF52941.1|1719721_1720006_+	DNA-binding phage protein	NA	B3GVX8	Streptococcus_phage	81.9	3.5e-41
SQF52942.1|1720032_1720251_+	Uncharacterised protein	NA	A0A1P8VVV1	Streptococcus_phage	83.3	3.9e-24
SQF52943.1|1720259_1721606_+	DNA polymerase III delta prime subunit	NA	A0A1P8VVQ6	Streptococcus_phage	83.7	9.3e-209
SQF52944.1|1721592_1722339_+	DNA replication protein, putative	NA	A0A1P8VVR3	Streptococcus_phage	96.0	3.5e-133
SQF52945.1|1722339_1723161_+	prophage LambdaSa2, DNA replication protein DnaC	NA	A0A1P8VVV9	Streptococcus_phage	95.2	1.1e-148
SQF52946.1|1723160_1723388_+	phage protein	NA	C5J991	Streptococcus_phage	46.6	1.3e-11
SQF52947.1|1723401_1723572_+	phage protein	NA	Q938M0	Temperate_phage	96.8	2.5e-10
SQF52948.1|1723568_1723838_+	phage membrane protein	NA	A7J287	Streptococcus_phage	77.5	1.4e-28
SQF52949.1|1723840_1724590_+	Adenine-specific methyltransferase	NA	Q9MCL7	Streptococcus_virus	89.5	7.3e-131
SQF52950.1|1724637_1725384_+	phage protein	NA	A0A2H4JBN7	uncultured_Caudovirales_phage	43.1	5.4e-25
SQF52951.1|1725395_1725614_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF52952.1|1725610_1726003_+	single strand binding protein	NA	A0A1P8VVS8	Streptococcus_phage	71.7	4.1e-48
SQF52953.1|1726016_1726295_+	Uncharacterised protein	NA	A3F632	Streptococcus_phage	96.7	9.6e-44
SQF52954.1|1726291_1726393_+	immunity repressor protein - phage associated	NA	A3F633	Streptococcus_phage	93.1	1.3e-06
SQF52955.1|1726389_1726617_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF52956.1|1726588_1727053_+	transcriptional activator-phage associated	NA	A0A1P8VVT5	Streptococcus_phage	92.2	5.8e-78
SQF52957.1|1727162_1727705_+|integrase	prophage LambdaSa2, site-specific recombinase phage integrase family protein	integrase	A0A1S5SCL7	Streptococcus_phage	98.9	8.3e-100
SQF52958.1|1727874_1728057_+	Uncharacterised protein	NA	A0A1S5SAV8	Streptococcus_phage	51.7	6.5e-09
SQF52959.1|1728763_1729243_+	Uncharacterised protein	NA	A0A1S5SCZ6	Streptococcus_phage	98.7	1.4e-79
SQF52960.1|1729235_1730948_+|terminase	prophage LambdaSa2, terminase large subunit	terminase	A0A1S5SCW2	Streptococcus_phage	97.0	0.0e+00
SQF52961.1|1730956_1732099_+|portal	phage portal protein, HK97 family	portal	A0A1P8VVT4	Streptococcus_phage	98.2	5.3e-213
SQF52962.1|1732149_1732692_+|protease	prophage LambdaSa2, protease	protease	A0A1P8VVX2	Streptococcus_phage	96.7	6.8e-94
SQF52963.1|1732702_1733965_+|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A0A1P8VVT0	Streptococcus_phage	85.6	5.8e-197
SQF52964.1|1733984_1734323_+	Uncharacterised protein	NA	A0A1P8VVS7	Streptococcus_phage	80.6	1.2e-45
SQF52965.1|1734319_1734625_+|head,tail	phage head-tail adaptor	head,tail	A0A1P8VVX4	Streptococcus_phage	84.2	5.4e-40
SQF52966.1|1734624_1734972_+	Uncharacterised protein	NA	A0A1P8VVS6	Streptococcus_phage	92.2	3.6e-56
SQF52967.1|1734958_1735303_+	bacteriophage pi2 protein 37	NA	A0A1P8VVU6	Streptococcus_phage	92.1	8.8e-55
SQF52968.1|1735317_1735989_+|tail	phi13 family phage major tail protein	tail	A0A1P8VVR1	Streptococcus_phage	89.9	7.6e-111
SQF52969.1|1735992_1736466_+	Uncharacterised protein	NA	A0A0A0YX24	Streptococcus_phage	90.4	9.2e-79
SQF52970.1|1736655_1739391_+|tail	phage-related minor tail protein	tail	A0A1P8VVW8	Streptococcus_phage	90.5	4.7e-244
SQF52971.1|1739387_1740110_+	phage protein	NA	A0A1P8VVR4	Streptococcus_phage	90.0	1.7e-124
SQF52972.1|1740110_1742054_+	prophage LambdaSa2, PblB	NA	A0A1P8VVT1	Streptococcus_phage	65.3	5.5e-186
SQF52973.1|1742050_1743166_+	phage associated hyaluronidase	NA	A7J2A8	Streptococcus_phage	71.7	1.7e-123
SQF52974.1|1743180_1744962_+	gp58-like family protein	NA	Q938J9	Temperate_phage	42.8	2.0e-73
SQF52975.1|1744970_1745399_+	phage protein	NA	Q938J8	Temperate_phage	89.3	3.7e-63
SQF52976.1|1745401_1746040_+	phage protein	NA	A3F662	Streptococcus_phage	53.2	1.2e-44
SQF52977.1|1746049_1746322_+	phage membrane protein	NA	A7J2B2	Streptococcus_phage	89.9	1.6e-35
SQF52978.1|1746318_1746546_+	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQF52979.1|1746554_1746665_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	71.4	1.0e-04
SQF52980.1|1746661_1747879_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8VVM5	Streptococcus_phage	60.1	3.7e-164
SQF52981.1|1748043_1748205_+	phage protein	NA	A3F673	Streptococcus_phage	58.3	2.3e-05
1748157:1748182	attR	ATTTGCCCACCATTTGCCCACCAACT	NA	NA	NA	NA
SQF52982.1|1748756_1749317_+	peroxiredoxin	NA	NA	NA	NA	NA
SQF52983.1|1749337_1750870_+	NADH dehydrogenase	NA	A0A2I2L5E1	Orpheovirus	37.5	1.4e-43
