The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483340	Streptococcus pyogenes strain NCTC12062 genome assembly, chromosome: 1	1827653	36589	48951	1827653		Synechococcus_phage(28.57%)	8	NA	NA
SQF26142.1|36589_40363_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.9	4.6e-40
SQF26143.1|40523_41978_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.1	1.7e-54
SQF26144.1|42005_43028_+	phosphoribosylaminoimidazole synthetase	NA	R9TMC7	Synechococcus_phage	41.8	4.0e-63
SQF26145.1|43195_43750_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
SQF26146.1|43933_45481_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	51.8	3.7e-44
SQF26147.1|45539_46664_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	27.7	1.3e-06
SQF26148.1|46826_48182_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQF26149.1|48339_48951_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	4.0e-18
>prophage 2
LS483340	Streptococcus pyogenes strain NCTC12062 genome assembly, chromosome: 1	1827653	177596	185087	1827653	transposase,integrase	Bacillus_phage(33.33%)	10	177707:177720	187117:187130
SQF26274.1|177596_180239_+	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	35.9	1.5e-64
177707:177720	attL	TACCAATGCCATTT	NA	NA	NA	NA
SQF26275.1|180425_180881_+	coA binding domain-containing protein	NA	NA	NA	NA	NA
SQF26276.1|180932_181400_+	ferric uptake regulator family protein	NA	NA	NA	NA	NA
SQF26277.1|181714_181855_+	trans-acting positive regulator	NA	NA	NA	NA	NA
SQF26278.1|182076_183411_+	phosphoadenosine phosphosulfate reductase family protein	NA	L0P6Z6	Lactobacillus_phage	39.7	5.2e-87
SQF26279.1|183403_183934_+	parB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	68.6	7.1e-64
SQF26280.1|183926_184136_+	putative uncharacterized conserved protein	NA	NA	NA	NA	NA
SQF26311.1|184262_184478_-	Transposase	NA	U5P429	Shigella_phage	45.5	7.0e-10
SQF26314.1|184517_184688_-|integrase	integrase	integrase	U5P429	Shigella_phage	46.3	9.7e-07
SQF26316.1|184790_185087_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	42.0	6.5e-06
187117:187130	attR	TACCAATGCCATTT	NA	NA	NA	NA
>prophage 3
LS483340	Streptococcus pyogenes strain NCTC12062 genome assembly, chromosome: 1	1827653	632960	673732	1827653	holin,tail,terminase,head,integrase	Streptococcus_phage(70.0%)	61	635557:635576	670273:670292
SQF26985.1|632960_633800_+	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
SQF26987.1|633774_634635_+	GDSL family lipase	NA	NA	NA	NA	NA
SQF26988.1|634612_635200_+	membrane protein	NA	NA	NA	NA	NA
SQF26990.1|635298_635574_+	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
635557:635576	attL	AAAGACGCTGTTAAATAATT	NA	NA	NA	NA
SQF26992.1|635662_636805_-|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
SQF26993.1|636928_637447_-	HIRAN domain protein	NA	E8ZDN5	Streptococcus_phage	45.9	9.2e-32
SQF26995.1|637458_638214_-	Cro/CI family transcriptional regulator	NA	A0A1S5S8S8	Streptococcus_phage	60.8	2.8e-77
SQF26996.1|638415_638628_+	helix-turn-helix family protein	NA	A0A1X9I583	Streptococcus_phage	56.7	1.1e-10
SQF26998.1|638668_638800_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF27000.1|638897_639209_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	77.7	5.3e-43
SQF27002.1|639210_639396_+	phage protein	NA	Q938N3	Temperate_phage	83.6	1.3e-20
SQF27004.1|639899_640286_+	phage DNA replication protein	NA	Q938N2	Temperate_phage	51.9	8.1e-25
SQF27005.1|640266_640500_+	phage protein	NA	Q938N1	Temperate_phage	96.1	2.8e-36
SQF27007.1|640496_640637_+	phage protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
SQF27008.1|640645_640852_+	phage protein	NA	NA	NA	NA	NA
SQF27009.1|640907_641081_+	phage protein	NA	J7KGX3	Streptococcus_phage	75.0	6.8e-16
SQF27010.1|641240_642167_+	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
SQF27012.1|642163_642364_+	phage protein	NA	NA	NA	NA	NA
SQF27013.1|642356_643154_+	phage protein	NA	J7KGZ1	Streptococcus_phage	83.8	1.3e-130
SQF27015.1|643275_643368_+	phage protein	NA	A0A1S5SCN4	Streptococcus_phage	70.0	3.7e-05
SQF27017.1|643518_643914_+	phage protein	NA	A8ATL9	Listeria_phage	52.3	1.4e-19
SQF27018.1|643910_645257_+	PcfJ	NA	A8ATM0	Listeria_phage	49.4	1.0e-122
SQF27019.1|645267_645600_+	phage protein	NA	M1NS23	Streptococcus_phage	67.0	8.8e-36
SQF27021.1|645596_646109_+	lactococcus phage M3 family protein	NA	M1PFM2	Streptococcus_phage	85.9	1.7e-78
SQF27022.1|646144_646462_+	phage protein	NA	A1EAD7	Streptococcus_phage	71.4	9.0e-30
SQF27024.1|646458_646614_+	phage protein	NA	NA	NA	NA	NA
SQF27025.1|646610_646862_+	phage protein	NA	M1PF60	Streptococcus_phage	59.0	1.6e-18
SQF27027.1|646937_647357_+	phage protein	NA	A0A1X9I5B5	Streptococcus_phage	79.1	1.9e-56
SQF27029.1|647956_648313_+	phage protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
SQF27030.1|648309_649578_+	structural phage protein	NA	M1PFL4	Streptococcus_phage	75.6	2.2e-188
SQF27032.1|649570_651064_+	phage protein	NA	M1Q184	Streptococcus_phage	55.0	2.0e-87
SQF27033.1|651069_651294_+	phage protein	NA	NA	NA	NA	NA
SQF27035.1|651370_651523_+	phage protein	NA	NA	NA	NA	NA
SQF27037.1|651515_651782_+	secreted phage protein	NA	Q938K9	Temperate_phage	95.5	6.4e-37
SQF27039.1|651783_651999_+	phage protein	NA	M1IRA5	Streptococcus_phage	72.4	4.1e-26
SQF27040.1|652080_653496_+|terminase	phage terminase	terminase	A0A0B5A091	Streptococcus_phage	74.0	1.5e-212
SQF27042.1|653576_654038_+	phage protein	NA	M1Q1L0	Streptococcus_phage	53.2	4.5e-38
SQF27043.1|654062_654974_+|head	phage, major head protein	head	M1PFL0	Streptococcus_phage	67.0	2.9e-113
SQF27045.1|654973_655174_+	phage protein	NA	NA	NA	NA	NA
SQF27046.1|655183_655606_+	phage Gp19/Gp15/Gp42 family protein	NA	A0A0B5A2F6	Streptococcus_phage	67.2	8.2e-47
SQF27047.1|655565_655904_+	phage protein	NA	A0A0B5A086	Streptococcus_phage	75.0	8.1e-45
SQF27049.1|655896_656133_+	phage protein	NA	A0A1P8BMT2	Lactococcus_phage	66.7	2.5e-21
SQF27051.1|656133_656469_+	phage protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	9.8e-35
SQF27053.1|656484_657075_+|tail	major tail protein	tail	M1PKG8	Streptococcus_phage	62.5	1.1e-60
SQF27055.1|657085_657349_+	phage protein	NA	A0A0B5A2F3	Streptococcus_phage	55.8	1.0e-18
SQF27057.1|657363_657735_+	phage protein	NA	M1PL84	Streptococcus_phage	62.4	1.7e-35
SQF27060.1|657734_660098_+|tail	minor tail protein GP26	tail	M1NRG5	Streptococcus_phage	50.2	2.1e-131
SQF27061.1|660094_660790_+	phage protein	NA	A0A1B1P761	Bacillus_phage	32.2	4.7e-07
SQF27063.1|660786_662745_+	phage endopeptidase	NA	M1PKG3	Streptococcus_phage	48.7	3.4e-95
SQF27065.1|662744_663854_+	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	65.9	1.2e-113
SQF27066.1|663868_665650_+	gp58-like family protein	NA	Q938J9	Temperate_phage	41.7	3.4e-73
SQF27068.1|665658_666087_+	phage protein	NA	A3F661	Streptococcus_phage	92.9	2.8e-66
SQF27070.1|666089_666701_+	phage protein	NA	Q938J7	Temperate_phage	88.7	4.1e-79
SQF27072.1|666710_667166_+|holin	holin	holin	A0A0M4R3G6	Streptococcus_phage	81.5	2.3e-63
SQF27074.1|667167_667278_+	putative phage membrane protein	NA	NA	NA	NA	NA
SQF27075.1|667283_668036_+	phage-associated cell wall hydrolase	NA	A3F665	Streptococcus_phage	96.4	3.9e-140
SQF27077.1|668104_668812_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
SQF27079.1|668922_669681_-	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQF27081.1|669920_670103_+	paratox	NA	A3F673	Streptococcus_phage	81.7	2.0e-21
SQF27083.1|670634_672497_+	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	34.1	2.4e-90
670273:670292	attR	AAAGACGCTGTTAAATAATT	NA	NA	NA	NA
SQF27086.1|672796_673732_-	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	44.8	1.3e-65
>prophage 4
LS483340	Streptococcus pyogenes strain NCTC12062 genome assembly, chromosome: 1	1827653	993099	1073520	1827653	integrase,tail,portal,terminase,transposase,protease	Streptococcus_phage(68.42%)	89	1028525:1028546	1070746:1070767
SQF27808.1|993099_994233_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF27810.1|994278_994527_-	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF27813.1|995289_995922_-	membrane protein	NA	NA	NA	NA	NA
SQF27815.1|995921_996686_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
SQF27817.1|996685_997438_-	oleoyl-[acyl-carrier-protein] hydrolase	NA	NA	NA	NA	NA
SQF27819.1|997447_998644_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
SQF27822.1|998640_999282_-	acetyltransferase GNAT Family	NA	NA	NA	NA	NA
SQF27823.1|999405_1000761_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
SQF27825.1|1000814_1001771_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF27827.1|1001767_1002619_-	disA bacterial checkpoint controller nucleotide-binding family protein	NA	NA	NA	NA	NA
SQF27828.1|1002731_1004069_+	UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
SQF27830.1|1004068_1004860_+	cobyric acid synthase	NA	NA	NA	NA	NA
SQF27833.1|1004968_1005958_-	lipoate-protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	23.9	4.1e-12
SQF27834.1|1006190_1008608_+	Hyaluronate lyase precursor	NA	NA	NA	NA	NA
SQF27836.1|1009280_1011044_-	dihydrolipoamide dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.5	1.2e-33
SQF27837.1|1011076_1011364_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF27839.1|1011374_1012784_-	branched-chain alpha-keto acid dehydrogenase E2 subunit	NA	NA	NA	NA	NA
SQF27841.1|1012968_1013970_-	TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit	NA	NA	NA	NA	NA
SQF27843.1|1014025_1014994_-	Pyruvate dehydrogenase E1 component alpha subunit	NA	NA	NA	NA	NA
SQF27845.1|1015278_1017186_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.8	1.3e-54
SQF27847.1|1017231_1017558_-|protease	protease	protease	NA	NA	NA	NA
SQF27848.1|1017587_1018373_-	acetyl esterase	NA	NA	NA	NA	NA
SQF27850.1|1018505_1020167_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
SQF27851.1|1020370_1021129_-	spermidine/putrescine import ATP-binding protein potA	NA	A0A1V0SE00	Indivirus	28.3	5.9e-11
SQF27852.1|1021125_1021995_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SQF27853.1|1022340_1023339_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQF27854.1|1023692_1025345_+	fibronectin-binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	41.0	1.7e-07
SQF27856.1|1025403_1026651_-	Tetratricopeptide repeat family protein	NA	NA	NA	NA	NA
SQF27858.1|1026640_1027822_-	permease	NA	NA	NA	NA	NA
SQF27860.1|1027879_1028356_-	7,8-dihydro-8-oxoguanine-triphosphatase	NA	NA	NA	NA	NA
1028525:1028546	attL	AAAGAACCTTGTCATATCAACG	NA	NA	NA	NA
SQF27861.1|1028959_1029670_-	exotoxin H precursor	NA	NA	NA	NA	NA
SQF27863.1|1029695_1030475_-	exotoxin I precursor	NA	A0A075M4C7	Staphylococcus_phage	32.7	9.3e-28
SQF27865.1|1030646_1031981_-	Phage lysin, N-acetylmuramoyl-L-alanine amidase	NA	Q5MY96	Streptococcus_phage	93.0	1.3e-247
SQF27867.1|1031981_1032089_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.1	5.5e-08
SQF27870.1|1032092_1032278_-	phage protein	NA	Q938J5	Temperate_phage	95.1	1.9e-24
SQF27872.1|1032274_1032571_-	phage protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
SQF27874.1|1032580_1033192_-	phage protein	NA	Q938J7	Temperate_phage	95.1	1.7e-85
SQF27876.1|1033194_1033623_-	phage protein	NA	Q938J8	Temperate_phage	82.9	4.0e-57
SQF27878.1|1033631_1035515_-	gp58-like family protein	NA	Q938J9	Temperate_phage	75.9	4.5e-185
SQF27880.1|1035529_1036645_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	74.9	1.6e-142
SQF27882.1|1036641_1038621_-	phage protein	NA	A7J2A7	Streptococcus_phage	92.8	0.0e+00
SQF27884.1|1038630_1039473_-	phage protein	NA	A7J2A6	Streptococcus_phage	97.9	8.8e-157
SQF27886.1|1039484_1043867_-|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	75.9	3.0e-224
SQF27888.1|1043881_1044115_-	phage protein	NA	A7J2A4	Streptococcus_phage	97.4	6.4e-33
SQF27890.1|1044189_1044645_-	phage protein	NA	A7J2A3	Streptococcus_phage	98.7	1.2e-75
SQF27891.1|1044698_1045298_-|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
SQF27893.1|1045309_1045669_-	phage protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
SQF27895.1|1045672_1046017_-	phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
SQF27897.1|1046013_1046292_-	phage protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
SQF27899.1|1046302_1046659_-	phage protein	NA	A7J298	Streptococcus_phage	100.0	4.6e-59
SQF27901.1|1046670_1047558_-	phage protein	NA	A7J297	Streptococcus_phage	100.0	2.1e-161
SQF27904.1|1047570_1048140_-	phage protein	NA	A7J296	Streptococcus_phage	99.5	7.4e-83
SQF27906.1|1048307_1048574_-	putative phage associated protein	NA	Q938K9	Temperate_phage	95.5	1.1e-36
SQF27908.1|1048578_1048695_-	phage membrane protein	NA	A7J294	Streptococcus_phage	100.0	2.0e-08
SQF27911.1|1048794_1050243_-	phage protein	NA	A7J293	Streptococcus_phage	99.6	1.3e-277
SQF27914.1|1050202_1051183_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.4	6.3e-183
SQF27916.1|1051208_1051736_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	93.0	5.1e-86
SQF27918.1|1051751_1053029_-|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	98.1	4.2e-243
SQF27921.1|1053018_1053471_-|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
SQF27923.1|1053560_1053977_-	phage protein	NA	A7J289	Streptococcus_phage	100.0	6.6e-73
SQF27925.1|1053973_1054165_-	phage protein	NA	NA	NA	NA	NA
SQF27927.1|1054315_1054582_-	phage protein	NA	A7J287	Streptococcus_phage	62.9	3.5e-19
SQF27929.1|1054578_1054746_-	phage protein	NA	A7J285	Streptococcus_phage	94.5	1.9e-23
SQF27931.1|1054746_1056069_-	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.3	7.3e-251
SQF27934.1|1056065_1056341_-	phage protein	NA	A7J283	Streptococcus_phage	97.8	1.3e-45
SQF27936.1|1056708_1059093_-	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	98.0	2.6e-286
SQF27939.1|1059097_1061020_-	phage DNA polymerase	NA	A7J280	Streptococcus_phage	98.6	0.0e+00
SQF27942.1|1061062_1061620_-	phage protein	NA	D2J040	Enterococcus_phage	58.5	3.3e-51
SQF27945.1|1061634_1062792_-	phage protein	NA	A7J278	Streptococcus_phage	98.2	1.0e-216
SQF27947.1|1062791_1063091_-	phage protein	NA	A7J277	Streptococcus_phage	96.0	8.2e-41
SQF27949.1|1063179_1063383_-	phage protein	NA	A7J276	Streptococcus_phage	91.0	1.3e-29
SQF27995.1|1063392_1063530_-	phage protein	NA	NA	NA	NA	NA
SQF27997.1|1063526_1063805_-	phage protein	NA	A7J274	Streptococcus_phage	94.6	2.5e-44
SQF27999.1|1063780_1063912_-	phage protein	NA	A7J274	Streptococcus_phage	78.6	2.4e-05
SQF28001.1|1063908_1064112_-	phage protein	NA	NA	NA	NA	NA
SQF28003.1|1064104_1064275_-	phage protein	NA	A7J273	Streptococcus_phage	89.3	1.2e-20
SQF28005.1|1064276_1064588_-	phage protein	NA	A1EAC3	Streptococcus_phage	85.3	1.4e-48
SQF28007.1|1064694_1064907_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF28009.1|1064833_1065001_-	phage protein	NA	NA	NA	NA	NA
SQF28011.1|1065004_1065724_-	phage antirepressor family protein	NA	M1Q1T4	Streptococcus_phage	70.3	7.4e-88
SQF28014.1|1065751_1065964_-	phage family protein	NA	J7KBP9	Streptococcus_phage	95.7	9.2e-31
SQF28016.1|1066161_1066503_+	phage repressor protein	NA	J7KJZ4	Streptococcus_phage	85.8	1.2e-48
SQF28018.1|1066486_1066870_+	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	75.2	5.9e-52
SQF28020.1|1066871_1068536_+	prophage Lp2 protein 4	NA	NA	NA	NA	NA
SQF28023.1|1068574_1069432_+	Site-specific DNA methylase	NA	A0A2H4UUI2	Bodo_saltans_virus	29.7	8.1e-17
SQF28025.1|1069551_1070691_+|integrase	phage integrase	integrase	A1EAB7	Streptococcus_phage	56.3	1.2e-119
SQF28027.1|1070773_1071814_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.1e-68
1070746:1070767	attR	CGTTGATATGACAAGGTTCTTT	NA	NA	NA	NA
SQF28029.1|1072057_1072651_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
SQF28031.1|1072650_1073520_-	glucose-1-phosphate thymidyl transferase	NA	K7QKA7	Escherichia_phage	64.2	5.4e-101
>prophage 5
LS483340	Streptococcus pyogenes strain NCTC12062 genome assembly, chromosome: 1	1827653	1084198	1139272	1827653	tRNA,head,transposase,protease	Bacillus_phage(28.57%)	52	NA	NA
SQF28059.1|1084198_1085098_-|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQF28062.1|1085231_1085408_+	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQF28064.1|1085525_1086434_-	exfoliative toxin	NA	NA	NA	NA	NA
SQF28067.1|1086492_1086879_-	glutathione S-transferase	NA	NA	NA	NA	NA
SQF28069.1|1087189_1088176_-	Rhodanese domain protein UPF0176, Firmicutes subgroup	NA	NA	NA	NA	NA
SQF28071.1|1088377_1088680_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF28073.1|1089226_1090432_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQF28075.1|1090821_1091052_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF28076.1|1091115_1092138_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF28077.1|1092260_1094684_-	topoisomerase IV subunit	NA	G3M9Z5	Bacillus_virus	33.2	1.0e-96
SQF28078.1|1094810_1096760_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	41.8	2.1e-121
SQF28079.1|1096894_1097536_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF28082.1|1097593_1098862_-	dihydroorotase	NA	NA	NA	NA	NA
SQF28084.1|1098993_1099647_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	40.5	8.0e-41
SQF28087.1|1099779_1100430_-	amino-acid ABC transporter permease yckA	NA	NA	NA	NA	NA
SQF28089.1|1100458_1101322_-	cystine-binding protein	NA	NA	NA	NA	NA
SQF28091.1|1101439_1102894_-	amidase	NA	NA	NA	NA	NA
SQF28094.1|1103090_1103720_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQF28096.1|1103777_1104470_-	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQF28098.1|1104746_1105283_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF28100.1|1105504_1106410_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQF28102.1|1106489_1107278_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
SQF28103.1|1107270_1107984_-	Purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQF28105.1|1108649_1109459_-	purine nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	42.2	1.1e-52
SQF28108.1|1109442_1109883_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	55.3	5.8e-35
SQF28110.1|1109901_1111113_-	phosphopentomutase	NA	NA	NA	NA	NA
SQF28112.1|1111189_1111873_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQF28115.1|1112250_1114350_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.2	5.1e-121
SQF28117.1|1114407_1115151_-	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQF28120.1|1115298_1115898_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQF28121.1|1115907_1117137_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
SQF28123.1|1117266_1117437_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF28126.1|1117456_1117954_-	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQF28128.1|1118033_1118873_-	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQF28131.1|1119081_1120257_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF28134.1|1120243_1121521_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF28137.1|1121750_1122740_-	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF28139.1|1122726_1123740_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF28141.1|1123732_1124677_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF28143.1|1124658_1125537_-	mevalonate kinase	NA	NA	NA	NA	NA
SQF28146.1|1125829_1127062_-	two component system histidine kinase	NA	NA	NA	NA	NA
SQF28148.1|1127070_1127739_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF28150.1|1127741_1128392_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF28152.1|1128611_1130624_+	5'-nucleotidase	NA	NA	NA	NA	NA
SQF28154.1|1130705_1131116_-	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF28156.1|1132008_1133886_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.3	8.7e-64
SQF28158.1|1133882_1135091_-|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.5	4.8e-39
SQF28161.1|1135215_1136064_-	degV family protein	NA	NA	NA	NA	NA
SQF28163.1|1136063_1136444_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF28165.1|1136671_1136848_-	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF28167.1|1137346_1138372_+|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQF28169.1|1139053_1139272_+|transposase	degenerate transposase	transposase	A0A1B1P773	Bacillus_phage	55.9	2.7e-09
>prophage 6
LS483340	Streptococcus pyogenes strain NCTC12062 genome assembly, chromosome: 1	1827653	1175539	1186144	1827653		Streptococcus_phage(57.14%)	9	NA	NA
SQF28249.1|1175539_1176682_-	aminotransferase class-V family protein	NA	H7BUW1	unidentified_phage	31.7	5.9e-15
SQF28251.1|1176916_1177357_+	membrane protein	NA	NA	NA	NA	NA
SQF28253.1|1177386_1178664_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF28256.1|1178743_1180096_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.4	3.5e-30
SQF28258.1|1180317_1180659_-	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
SQF28261.1|1180719_1181886_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF28263.1|1181979_1182666_-	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF28266.1|1182662_1183826_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQF28269.1|1183933_1186144_+	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.8	3.2e-267
>prophage 7
LS483340	Streptococcus pyogenes strain NCTC12062 genome assembly, chromosome: 1	1827653	1221555	1262191	1827653	tRNA,transposase,protease,bacteriocin	Tupanvirus(20.0%)	31	NA	NA
SQF28352.1|1221555_1223961_-|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
SQF28354.1|1224170_1225214_-|tRNA	phenylalanyl-tRNA synthetase alpha subunit	tRNA	A0A2K9L3A8	Tupanvirus	34.3	4.6e-30
SQF28357.1|1225481_1225577_-	hupothetical protein	NA	NA	NA	NA	NA
SQF28359.1|1225581_1226715_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF28362.1|1226768_1227254_-	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQF28364.1|1227439_1227628_-	epuA protein	NA	NA	NA	NA	NA
SQF28366.1|1227631_1228903_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF28369.1|1228967_1229225_-	membrane protein	NA	NA	NA	NA	NA
SQF28371.1|1229490_1229907_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
SQF28374.1|1229919_1231326_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
SQF28376.1|1231487_1232363_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
SQF28378.1|1232378_1233887_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
SQF28381.1|1233902_1234439_-	ATP synthase delta chain	NA	NA	NA	NA	NA
SQF28383.1|1234438_1234933_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
SQF28385.1|1234950_1235667_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
SQF28388.1|1235701_1235899_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
SQF28391.1|1236290_1237313_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	27.9	3.6e-19
SQF28392.1|1237326_1239285_-	NAD-dependent DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	34.9	5.8e-103
SQF28393.1|1240256_1242989_-	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
SQF28394.1|1243560_1244679_-	ABC transporter	NA	NA	NA	NA	NA
SQF28395.1|1244675_1245803_-	ABC transporter	NA	NA	NA	NA	NA
SQF28396.1|1245811_1246735_-	ABC transporter family protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	38.1	6.7e-33
SQF28397.1|1246757_1247441_-	streptolysin S biosynthesis protein SagF	NA	NA	NA	NA	NA
SQF28398.1|1247437_1248109_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF28399.1|1248083_1249442_-|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
SQF28400.1|1249461_1250520_-|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
SQF28401.1|1250516_1251467_-	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQF28402.1|1251688_1251850_-|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
SQF28403.1|1252714_1258882_-	extracellular matrix binding protein	NA	NA	NA	NA	NA
SQF28404.1|1259353_1260895_+	MgaA-like transcriptional regulator	NA	NA	NA	NA	NA
SQF28405.1|1261501_1262191_+|transposase	transposase	transposase	A0A1X9I619	Streptococcus_phage	79.4	1.3e-94
>prophage 8
LS483340	Streptococcus pyogenes strain NCTC12062 genome assembly, chromosome: 1	1827653	1416817	1451974	1827653	transposase,protease,bacteriocin	Erwinia_phage(11.11%)	43	NA	NA
SQF28589.1|1416817_1417045_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQF28591.1|1417362_1417785_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF28593.1|1417781_1417931_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQF28595.1|1418097_1418352_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF28597.1|1418657_1419134_-	phosphohydrolase	NA	NA	NA	NA	NA
SQF28599.1|1419153_1420050_-	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF28601.1|1420169_1420577_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF28602.1|1420557_1421055_-|protease	metalloprotease	protease	NA	NA	NA	NA
SQF28605.1|1421213_1421789_-	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQF28607.1|1421834_1422887_-	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQF28609.1|1423045_1424818_-	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQF28611.1|1425133_1426315_-	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.6e-16
SQF28613.1|1426470_1426686_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF28615.1|1426682_1427192_-	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQF28617.1|1427264_1428122_-	s1 RNA binding domain	NA	NA	NA	NA	NA
SQF28619.1|1428229_1428787_-	ribosome recycling factor	NA	NA	NA	NA	NA
SQF28621.1|1428816_1429545_-	uridylate kinase	NA	NA	NA	NA	NA
SQF28622.1|1429867_1430557_-	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQF28624.1|1430662_1431088_-	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQF28626.1|1431331_1431685_+	integral membrane protein	NA	NA	NA	NA	NA
SQF28628.1|1431754_1434160_-	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
SQF28630.1|1434376_1435183_+	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
SQF28633.1|1435330_1436185_-	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQF28635.1|1436185_1436911_-	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.4e-17
SQF28637.1|1436974_1437907_-	manganese-binding protein	NA	NA	NA	NA	NA
SQF28639.1|1438052_1438700_+	metalloregulator ScaR	NA	NA	NA	NA	NA
SQF28641.1|1438798_1439140_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF28643.1|1439290_1439986_-	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQF28645.1|1440004_1440256_-	membrane protein	NA	NA	NA	NA	NA
SQF28648.1|1440255_1440810_-	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQF28650.1|1440840_1442223_-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.4	3.8e-32
SQF28653.1|1442395_1443733_-	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQF28656.1|1444065_1445025_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQF28659.1|1445100_1445799_-	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.2	9.3e-11
SQF28661.1|1445791_1446028_-	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQF28664.1|1446751_1447720_+	Protein of uncharacterised function (DUF3644)	NA	A0A0N9RUA4	Staphylococcus_phage	52.6	2.0e-88
SQF28668.1|1448043_1448157_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF28671.1|1448233_1448866_+	secreted phage protein	NA	NA	NA	NA	NA
SQF28673.1|1448959_1449211_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF28675.1|1449568_1450024_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF28677.1|1450041_1450566_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF28679.1|1451058_1451406_+|transposase	transposase, ISSmu2	transposase	NA	NA	NA	NA
SQF28681.1|1451434_1451974_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	50.3	1.9e-40
>prophage 9
LS483340	Streptococcus pyogenes strain NCTC12062 genome assembly, chromosome: 1	1827653	1471497	1477531	1827653		Streptococcus_phage(100.0%)	9	NA	NA
SQF28709.1|1471497_1472325_+	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.5	2.9e-128
SQF28711.1|1472398_1472755_-	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.1e-39
SQF28713.1|1473053_1473683_+	copper homeostasis protein	NA	NA	NA	NA	NA
SQF28715.1|1473729_1474122_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF28717.1|1474148_1475012_-	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.3	1.9e-114
SQF28719.1|1475016_1475340_-	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF28722.1|1475744_1475984_-	Tpl protein	NA	NA	NA	NA	NA
SQF28724.1|1476002_1476878_-	DNA polymerase III subunit delta	NA	M1NSC1	Streptococcus_phage	41.7	6.9e-56
SQF28726.1|1476895_1477531_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	5.9e-65
>prophage 10
LS483340	Streptococcus pyogenes strain NCTC12062 genome assembly, chromosome: 1	1827653	1745705	1768531	1827653	tRNA	Streptococcus_phage(44.44%)	29	NA	NA
SQF29258.1|1745705_1746926_-	transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.7	7.8e-05
SQF29260.1|1746936_1748919_-	DNA mismatch repair protein	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	3.0e-62
SQF29263.1|1749013_1750159_-	DNA integration/recombination/inversion protein	NA	A0A1X9I5Y5	Streptococcus_phage	45.6	6.5e-86
SQF29266.1|1750416_1751271_-	DNA-damage-inducible protein D	NA	A0A1W6JPJ7	Morganella_phage	52.5	1.0e-56
SQF29270.1|1751531_1751693_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF29272.1|1752083_1752851_-	repressor protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
SQF29275.1|1753004_1753211_+	Cro/CI family phage transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
SQF29278.1|1753244_1754012_+	BRO family, N-terminal domain protein	NA	A0A0A7S0G2	Clostridium_phage	53.7	5.0e-26
SQF29280.1|1754021_1754639_+	phage antirepressor protein	NA	A0A2H4JB17	uncultured_Caudovirales_phage	43.5	1.7e-40
SQF29283.1|1754638_1754908_+	Prophage antirepressor	NA	NA	NA	NA	NA
SQF29285.1|1755164_1755497_+	phage protein	NA	NA	NA	NA	NA
SQF29288.1|1755493_1755688_+	phage protein	NA	NA	NA	NA	NA
SQF29291.1|1755699_1756062_+	phage protein	NA	NA	NA	NA	NA
SQF29294.1|1756058_1756367_+	phage protein	NA	NA	NA	NA	NA
SQF29296.1|1756369_1756642_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	4.7e-19
SQF29299.1|1756642_1757509_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	73.1	1.4e-120
SQF29302.1|1757520_1758402_+	Predicted P-loop ATPase and inactivated derivatives	NA	A0A0A7RTG3	Clostridium_phage	32.3	3.3e-29
SQF29305.1|1758413_1758914_+	Predicted P-loop ATPase and inactivated derivatives	NA	NA	NA	NA	NA
SQF29309.1|1759207_1759462_+	phage protein	NA	NA	NA	NA	NA
SQF29312.1|1759458_1759632_+	phage protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	8.6e-11
SQF29315.1|1759812_1760322_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	62.5	4.2e-29
SQF29318.1|1760395_1760884_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	3.1e-45
SQF29321.1|1761286_1761649_+	phage protein	NA	A0A2H4JFS1	uncultured_Caudovirales_phage	29.9	8.7e-05
SQF29323.1|1761623_1762007_+	phage protein	NA	J7KDQ1	Streptococcus_phage	40.9	2.9e-14
SQF29326.1|1762207_1762825_+	phage protein	NA	NA	NA	NA	NA
SQF29329.1|1763220_1765776_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	22.9	1.0e-43
SQF29333.1|1765762_1765969_-	cytoplasmic protein	NA	NA	NA	NA	NA
SQF29335.1|1766111_1766549_-	arginine repressor	NA	NA	NA	NA	NA
SQF29338.1|1766839_1768531_+|tRNA	arginyl-tRNA synthetase	tRNA	A0A2I2L3K1	Orpheovirus	32.6	4.2e-73
