The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483343	Streptococcus ferus strain NCTC12278 genome assembly, chromosome: 1	1872314	29984	43339	1872314		Prochlorococcus_phage(25.0%)	9	NA	NA
SQF38065.1|29984_33710_+	putative phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	28.6	1.5e-38
SQF38066.1|33712_35158_+	putative amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.4	4.4e-55
SQF38935.1|35251_36271_+	phosphoribosylformylglycinamide cyclo-ligase (AIRS); phosphoribosyl aminoimidazole synthetase	NA	M4QRQ6	Synechococcus_phage	43.7	1.3e-61
SQF38938.1|36270_36825_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	33.7	4.4e-24
SQF38941.1|36837_39066_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	51.6	1.4e-44
SQF38943.1|39316_40465_+	LysM domain-containing protein	NA	A0A0E3XB61	Gordonia_phage	40.4	8.6e-14
SQF38946.1|41086_41512_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF38949.1|41525_42014_+	Zn peptidase	NA	A0A090D850	Clostridium_phage	33.9	2.0e-12
SQF38951.1|42007_43339_+	Uncharacterised protein	NA	A0A090DBU6	Clostridium_phage	25.9	8.4e-29
>prophage 2
LS483343	Streptococcus ferus strain NCTC12278 genome assembly, chromosome: 1	1872314	508318	515711	1872314		Enterobacteria_phage(16.67%)	7	NA	NA
SQF39718.1|508318_510064_-	histidine kinase LytS	NA	Q9EYF3	Enterobacteria_phage	29.2	1.2e-54
SQF39721.1|510351_510906_+	alpha/beta hydrolase	NA	S4W232	Pandoravirus	27.8	6.9e-09
SQF39723.1|511004_511862_+	site-specific DNA-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	63.5	5.7e-95
SQF39726.1|511851_512649_+	DNA (cytosine-5-)-methyltransferase	NA	A0A249XUJ2	Enterococcus_phage	34.6	1.2e-33
SQF39728.1|512645_513179_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF39730.1|513260_514169_+	restriction endonuclease	NA	A0A2H4JAL2	uncultured_Caudovirales_phage	29.7	1.5e-24
SQF39732.1|514367_515711_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SC03	Catovirus	26.2	1.2e-35
>prophage 3
LS483343	Streptococcus ferus strain NCTC12278 genome assembly, chromosome: 1	1872314	926337	933409	1872314		Methanothermobacter_phage(16.67%)	8	NA	NA
SQF40383.1|926337_927024_+	phosphopantothenate--cysteine ligase	NA	Q9HH70	Methanothermobacter_phage	35.3	9.4e-24
SQF40384.1|927016_927562_+	phosphopantothenoylcysteine decarboxylase	NA	A0A1V0S7W6	Shearwaterpox_virus	34.8	1.7e-23
SQF40385.1|927554_928127_+	membrane protein	NA	NA	NA	NA	NA
SQF40386.1|928200_929919_+	Phosphoglucomutase	NA	A0A1X9I671	Streptococcus_phage	83.7	2.7e-277
SQF40387.1|929964_930570_-	transposon-like protein	NA	A0A223LKM8	Bacillus_phage	44.5	7.5e-25
SQF40388.1|930571_931546_-	Pseudouridylate synthases, 23S RNA-specific	NA	NA	NA	NA	NA
SQF40389.1|931547_932807_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.5	3.1e-97
SQF40390.1|932821_933409_-	Sua5/YciO/YrdC/YwlC family protein	NA	A0A291ATS8	Pandoravirus	33.3	5.6e-17
>prophage 4
LS483343	Streptococcus ferus strain NCTC12278 genome assembly, chromosome: 1	1872314	1403567	1414763	1872314	tRNA	Streptococcus_phage(87.5%)	13	NA	NA
SQF40867.1|1403567_1405712_-|tRNA	Methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	40.0	1.2e-98
SQF40868.1|1405689_1406544_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF40869.1|1406794_1407676_+	tellurite resistance protein TehB	NA	NA	NA	NA	NA
SQF40870.1|1407754_1408582_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	75.8	4.5e-121
SQF40871.1|1408725_1409103_+	lactoylglutathione lyase and related lyases	NA	NA	NA	NA	NA
SQF40872.1|1409113_1409533_+	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein	NA	NA	NA	NA	NA
SQF40873.1|1409643_1410546_+	cation efflux family protein	NA	M1Q1N9	Streptococcus_phage	52.7	2.1e-79
SQF40874.1|1410561_1410915_-	Arsenate reductase	NA	M1PLC0	Streptococcus_phage	67.5	8.7e-42
SQF40875.1|1410925_1411417_-	methylated-DNA--protein-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	52.9	2.7e-41
SQF40876.1|1411464_1412646_-	D-3-phosphoglycerate dehydrogenase	NA	M1NSB9	Streptococcus_phage	79.3	4.1e-176
SQF40877.1|1412711_1413266_-	acetyltransferase	NA	M1PSC3	Streptococcus_phage	59.4	5.2e-57
SQF40878.1|1413237_1413672_-	translation initiation inhibitor	NA	NA	NA	NA	NA
SQF40879.1|1413671_1414763_-	3-phosphoserine/phosphohydroxythreonine aminotransferase	NA	M1Q1P2	Streptococcus_phage	75.4	9.9e-161
>prophage 5
LS483343	Streptococcus ferus strain NCTC12278 genome assembly, chromosome: 1	1872314	1418169	1423979	1872314		Streptococcus_phage(71.43%)	8	NA	NA
SQF40884.1|1418169_1419039_-	putative S-adenosyl-methionine-dependent methyl transferase, YraL family	NA	M1PLC5	Streptococcus_phage	68.3	7.0e-109
SQF40885.1|1419042_1419360_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	62.9	1.9e-32
SQF40886.1|1419352_1420159_-	signal peptidase II	NA	NA	NA	NA	NA
SQF40887.1|1420155_1421031_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	47.0	2.2e-70
SQF40888.1|1421027_1421693_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	67.3	1.0e-75
SQF40889.1|1421760_1422420_-	acetoin utilization protein, acetoin dehydrogenase	NA	M1NSC5	Streptococcus_phage	58.7	4.6e-68
SQF40890.1|1422504_1423215_-	branched-chain amino acid transport system ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.6	1.8e-14
SQF40891.1|1423214_1423979_-	branched-chain amino acid ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.1	1.5e-14
>prophage 6
LS483343	Streptococcus ferus strain NCTC12278 genome assembly, chromosome: 1	1872314	1659953	1668916	1872314		Lactobacillus_phage(33.33%)	9	NA	NA
SQF41129.1|1659953_1661123_-	glycosyltransferase	NA	Q7T5G5	Cryptophlebia_leucotreta_granulosis_virus	25.7	2.9e-09
SQF41130.1|1661095_1661590_-	nicotinamidase/pyrazinamidase	NA	NA	NA	NA	NA
SQF41131.1|1661596_1662043_-	dUTP pyrophosphatase	NA	Q332E8	Clostridium_botulinum_C_phage	51.3	5.9e-35
SQF41132.1|1662105_1662465_-	Inner membrane protein ybaN	NA	NA	NA	NA	NA
SQF41133.1|1662632_1663238_+	NADPH-dependent FMN reductase	NA	A0A2P0ZL77	Lactobacillus_phage	54.5	6.9e-55
SQF41134.1|1663249_1664476_+	Fumarate reductase, flavoprotein subunit precursor	NA	A0A2P0ZL82	Lactobacillus_phage	51.3	2.4e-62
SQF41135.1|1664547_1665339_+	formate/nitrite transporter family protein	NA	NA	NA	NA	NA
SQF41136.1|1665408_1667205_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.7	4.3e-44
SQF41137.1|1667209_1668916_-	ABC transporter, ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	8.3e-37
>prophage 7
LS483343	Streptococcus ferus strain NCTC12278 genome assembly, chromosome: 1	1872314	1819321	1827825	1872314	tRNA	Streptococcus_phage(33.33%)	7	NA	NA
SQF41268.1|1819321_1821013_+|tRNA	arginyl-tRNA synthetase	tRNA	A0A2I2L3K1	Orpheovirus	32.5	9.6e-78
SQF41269.1|1821052_1821928_-	membrane protein	NA	M1Q1P6	Streptococcus_phage	41.3	5.0e-54
SQF41270.1|1821964_1822837_-	hypothetical membrane spanning protein	NA	M1Q1P6	Streptococcus_phage	35.7	2.5e-45
SQF41271.1|1822860_1823802_-	Integral membrane protein	NA	NA	NA	NA	NA
SQF41272.1|1823794_1825543_-|tRNA	aspartyl-tRNA synthetase	tRNA	A0A1V0SAC0	Catovirus	21.5	2.9e-13
SQF41273.1|1825616_1826894_-|tRNA	histidyl-tRNA ligase	tRNA	A0A2K9L0H9	Tupanvirus	25.7	3.0e-23
SQF41274.1|1827048_1827825_+	Hydrolase (HAD superfamily)	NA	Q0GXW5	Lactococcus_phage	24.4	1.4e-07
>prophage 8
LS483343	Streptococcus ferus strain NCTC12278 genome assembly, chromosome: 1	1872314	1845301	1864890	1872314	transposase,tRNA	Bacillus_phage(23.08%)	21	NA	NA
SQF41292.1|1845301_1846648_-	alkaline phosphatase synthesis sensor protein	NA	W8CYF6	Bacillus_phage	33.5	9.4e-36
SQF41293.1|1846650_1847340_-	alkaline phosphatase synthesis transcriptional regulatory protein PhoP	NA	W8CYM9	Bacillus_phage	40.6	3.4e-42
SQF41294.1|1847463_1848063_+	phosphoglycerate mutase family protein	NA	NA	NA	NA	NA
SQF41295.1|1848097_1848715_-	transglycosylase protein	NA	Q4Z8Z7	Staphylococcus_phage	86.2	4.9e-24
SQF41296.1|1848888_1849680_-	LysM domain-containing protein	NA	A0A249XZV3	Enterococcus_phage	67.6	3.3e-20
SQF41297.1|1849857_1850394_+|transposase	IS861, transposase OrfA	transposase	NA	NA	NA	NA
SQF41298.1|1850369_1851203_+|transposase	IS861, transposase OrfB	transposase	A0A1B1P773	Bacillus_phage	50.0	2.5e-63
SQF41299.1|1851236_1852031_-	cobalt permease	NA	NA	NA	NA	NA
SQF41300.1|1852023_1852866_-	cobalt transporter ATP-binding subunit	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.5	1.2e-17
SQF41301.1|1852841_1853684_-	cobalt transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	32.2	4.8e-22
SQF41302.1|1853683_1854226_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
SQF41303.1|1854236_1855286_-	membrane protein	NA	NA	NA	NA	NA
SQF41304.1|1855351_1856635_-	peptidase	NA	A0A167R9K4	Powai_lake_megavirus	25.6	3.2e-17
SQF41305.1|1856638_1857886_-	peptidase	NA	A0A1X9I714	Streptococcus_phage	40.1	4.4e-88
SQF41306.1|1857965_1858337_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	54.7	2.3e-16
SQF41307.1|1858339_1859428_+	recombination protein F	NA	NA	NA	NA	NA
SQF41308.1|1859424_1859529_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF41309.1|1859570_1861052_-	inosine-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.7	2.3e-96
SQF41310.1|1861193_1862216_-|tRNA	tryptophanyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQF41311.1|1862326_1863199_+	membrane protein	NA	M1Q1P6	Streptococcus_phage	28.4	4.2e-29
SQF41312.1|1863270_1864890_+	ABC transporter ATPase	NA	A0A2K9L3Z8	Tupanvirus	25.8	1.4e-46
