assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900475055.1_42197_E02	LS483350	Staphylococcus aureus strain NCTC11940 genome assembly, chromosome: 1	1	366721-366821	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|129aa|up_6|LS483350.1_359327_359714_-,NA|86aa|up_4|LS483350.1_360664_360922_-,NA|221aa|down_1|LS483350.1_367911_368574_-	NA|88aa|up_9|LS483350.1_357440_357704_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|84aa|up_8|LS483350.1_358003_358255_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|194aa|up_7|LS483350.1_358680_359262_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|129aa|up_6|LS483350.1_359327_359714_-	NA	NA|209aa|up_5|LS483350.1_359965_360592_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|86aa|up_4|LS483350.1_360664_360922_-	NA	NA|508aa|up_3|LS483350.1_361036_362560_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_2|LS483350.1_362575_363145_-	TIGR03137, AhpC, peroxiredoxin	NA|269aa|up_1|LS483350.1_363585_364392_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_0|LS483350.1_364472_365861_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|319aa|down_0|LS483350.1_366837_367794_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|LS483350.1_367911_368574_-	NA	NA|136aa|down_2|LS483350.1_368716_369124_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|LS483350.1_369636_370215_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|LS483350.1_370214_371483_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|LS483350.1_371520_372987_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|LS483350.1_373011_374553_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|LS483350.1_374620_375814_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|LS483350.1_375840_376041_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|LS483350.1_376538_376769_-	pfam12645, HTH_16, Helix-turn-helix domain
GCA_900475055.1_42197_E02	LS483350	Staphylococcus aureus strain NCTC11940 genome assembly, chromosome: 1	2	639433-639525	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|LS483350.1_635916_636024_+,NA|169aa|down_4|LS483350.1_643272_643779_+,NA|239aa|down_5|LS483350.1_643940_644657_+	NA|313aa|up_9|LS483350.1_630118_631057_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|LS483350.1_631267_631804_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|LS483350.1_631972_632449_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|LS483350.1_632488_633784_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|169aa|up_5|LS483350.1_633826_634333_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|LS483350.1_634831_635842_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|LS483350.1_635916_636024_+	NA	NA|139aa|up_2|LS483350.1_636116_636533_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|LS483350.1_636529_638191_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|LS483350.1_638579_639215_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|LS483350.1_639593_640481_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|329aa|down_1|LS483350.1_640592_641579_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|LS483350.1_641633_642353_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|LS483350.1_642336_643137_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|LS483350.1_643272_643779_+	NA	NA|239aa|down_5|LS483350.1_643940_644657_+	NA	NA|263aa|down_6|LS483350.1_644825_645614_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|LS483350.1_645864_646239_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|LS483350.1_647186_648116_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|LS483350.1_648310_648535_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_900475055.1_42197_E02	LS483350	Staphylococcus aureus strain NCTC11940 genome assembly, chromosome: 1	3	755247-755329	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|203aa|up_9|LS483350.1_741173_741782_+	pfam01063, Aminotran_4, Amino-transferase class IV	NA|237aa|up_8|LS483350.1_742141_742852_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|LS483350.1_742835_743840_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|LS483350.1_744313_746254_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|626aa|up_5|LS483350.1_746530_748408_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|LS483350.1_748419_750201_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|LS483350.1_750422_751400_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|LS483350.1_751392_752907_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|LS483350.1_753146_754205_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|LS483350.1_754555_755098_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|LS483350.1_755777_756695_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|502aa|down_1|LS483350.1_756964_758470_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_2|LS483350.1_758810_759311_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_3|LS483350.1_759330_760197_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_4|LS483350.1_760997_761396_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_5|LS483350.1_761358_763464_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_6|LS483350.1_763581_764553_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|338aa|down_7|LS483350.1_765261_766275_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|down_8|LS483350.1_766261_767218_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|254aa|down_9|LS483350.1_767214_767976_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
GCA_900475055.1_42197_E02	LS483350	Staphylococcus aureus strain NCTC11940 genome assembly, chromosome: 1	4	801795-801880	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	3	801825-801850|801825-801850|801825-801850	LS483350.1_249867-249842|LS483350.1_764843-764818|LS483350.1_916912-916887	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|LS483350.1_789047_789887_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|LS483350.1_790060_790711_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|LS483350.1_790707_790944_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|LS483350.1_791212_793198_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|LS483350.1_793205_796052_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|LS483350.1_796713_797646_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|LS483350.1_797651_798491_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|LS483350.1_798498_798984_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|LS483350.1_798991_800431_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|LS483350.1_800497_801433_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|LS483350.1_802312_803224_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|LS483350.1_803220_804216_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|LS483350.1_804325_805270_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|LS483350.1_805842_806430_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|290aa|down_4|LS483350.1_806672_807542_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|LS483350.1_808277_808907_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|LS483350.1_809549_810563_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|LS483350.1_810615_811626_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|LS483350.1_811764_812955_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|LS483350.1_813076_813838_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCA_900475055.1_42197_E02	LS483350	Staphylococcus aureus strain NCTC11940 genome assembly, chromosome: 1	5	852754-852835	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	852778-852811|852778-852811	LS483350.1_1345900-1345867|LS483350.1_1435053-1435086	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_8|LS483350.1_844969_845083_+,NA|126aa|up_4|LS483350.1_848787_849165_+,NA	NA|127aa|up_9|LS483350.1_844525_844906_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_8|LS483350.1_844969_845083_+	NA	NA|207aa|up_7|LS483350.1_845084_845705_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|362aa|up_6|LS483350.1_845806_846892_+	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|631aa|up_5|LS483350.1_846888_848781_+	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|126aa|up_4|LS483350.1_848787_849165_+	NA	NA|261aa|up_3|LS483350.1_849315_850098_+	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|244aa|up_2|LS483350.1_850223_850955_-	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|221aa|up_1|LS483350.1_851463_852126_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|96aa|up_0|LS483350.1_852362_852650_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|down_0|LS483350.1_853388_853778_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|LS483350.1_853770_854067_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|LS483350.1_854316_855342_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|LS483350.1_855334_856030_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|LS483350.1_856047_856869_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|LS483350.1_857012_858233_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|LS483350.1_858320_859049_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|LS483350.1_859072_859801_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|245aa|down_8|LS483350.1_859975_860710_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|71aa|down_9|LS483350.1_860859_861072_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain
GCA_900475055.1_42197_E02	LS483350	Staphylococcus aureus strain NCTC11940 genome assembly, chromosome: 1	6	1051859-1051946	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|LS483350.1_1051735_1051855_+,NA|45aa|down_0|LS483350.1_1051955_1052090_-,NA|432aa|down_1|LS483350.1_1052241_1053537_+	NA|730aa|up_9|LS483350.1_1040313_1042503_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|LS483350.1_1042481_1043966_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|LS483350.1_1043958_1044987_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|LS483350.1_1044989_1045556_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|LS483350.1_1045570_1047049_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|LS483350.1_1047070_1048318_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|LS483350.1_1048582_1049389_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|LS483350.1_1049381_1050782_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|LS483350.1_1050796_1051372_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|LS483350.1_1051735_1051855_+	NA	NA|45aa|down_0|LS483350.1_1051955_1052090_-	NA	NA|432aa|down_1|LS483350.1_1052241_1053537_+	NA	NA|391aa|down_2|LS483350.1_1053961_1055134_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|LS483350.1_1055187_1055730_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|LS483350.1_1055883_1056150_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|LS483350.1_1056152_1057871_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|LS483350.1_1058107_1058341_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|LS483350.1_1058538_1059900_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|LS483350.1_1059896_1060916_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|LS483350.1_1061048_1061711_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCA_900475055.1_42197_E02	LS483350	Staphylococcus aureus strain NCTC11940 genome assembly, chromosome: 1	7	1136372-1136457	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	3	1136402-1136427|1136402-1136427|1136402-1136427	LS483350.1_249842-249867|LS483350.1_764818-764843|LS483350.1_764874-764899	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|169aa|up_7|LS483350.1_1130067_1130574_+,NA|62aa|up_4|LS483350.1_1132655_1132841_-,NA|78aa|up_3|LS483350.1_1133462_1133696_-,NA|49aa|up_1|LS483350.1_1135804_1135951_+,NA|66aa|up_0|LS483350.1_1135934_1136132_+,NA|76aa|down_6|LS483350.1_1143431_1143659_+	NA|110aa|up_9|LS483350.1_1128296_1128626_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_8|LS483350.1_1128994_1129396_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|LS483350.1_1130067_1130574_+	NA	NA|166aa|up_6|LS483350.1_1130832_1131330_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|LS483350.1_1131483_1131834_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|LS483350.1_1132655_1132841_-	NA	NA|78aa|up_3|LS483350.1_1133462_1133696_-	NA	NA|320aa|up_2|LS483350.1_1134172_1135132_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|LS483350.1_1135804_1135951_+	NA	NA|66aa|up_0|LS483350.1_1135934_1136132_+	NA	NA|239aa|down_0|LS483350.1_1136632_1137349_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|LS483350.1_1137456_1138182_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|LS483350.1_1138276_1139002_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|LS483350.1_1139439_1140441_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|312aa|down_4|LS483350.1_1140460_1141396_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|LS483350.1_1141567_1143124_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|LS483350.1_1143431_1143659_+	NA	NA|316aa|down_7|LS483350.1_1143963_1144911_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|LS483350.1_1145159_1145348_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|LS483350.1_1146259_1146394_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCA_900475055.1_42197_E02	LS483350	Staphylococcus aureus strain NCTC11940 genome assembly, chromosome: 1	8	1959531-1959609	8	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	1959554-1959586|1959554-1959586|1959554-1959586|1959554-1959586|1959554-1959586|1959554-1959586	LS483350.1_801861-801893|LS483350.1_1136391-1136359|LS483350.1_1345854-1345822|LS483350.1_1616883-1616915|LS483350.1_2598161-2598193|LS483350.1_1435099-1435131	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|LS483350.1_1953725_1954001_+,NA|129aa|up_1|LS483350.1_1957986_1958373_-,NA|138aa|down_1|LS483350.1_1961292_1961706_-	NA|416aa|up_9|LS483350.1_1951648_1952896_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|69aa|up_8|LS483350.1_1952907_1953114_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|LS483350.1_1953254_1953719_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|LS483350.1_1953725_1954001_+	NA	NA|406aa|up_5|LS483350.1_1954278_1955496_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|LS483350.1_1955611_1956241_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|LS483350.1_1956230_1957274_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|LS483350.1_1957270_1957972_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|LS483350.1_1957986_1958373_-	NA	NA|253aa|up_0|LS483350.1_1958589_1959348_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|LS483350.1_1959875_1960862_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|LS483350.1_1961292_1961706_-	NA	NA|244aa|down_2|LS483350.1_1961930_1962662_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_3|LS483350.1_1962663_1963977_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_4|LS483350.1_1964268_1964769_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	DEDDh|185aa|down_5|LS483350.1_1965157_1965712_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_6|LS483350.1_1965779_1966850_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_7|LS483350.1_1967096_1967627_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|down_8|LS483350.1_1967796_1969158_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|down_9|LS483350.1_1969238_1970186_-	PRK13337, PRK13337, putative lipid kinase; Reviewed
GCA_900475055.1_42197_E02	LS483350	Staphylococcus aureus strain NCTC11940 genome assembly, chromosome: 1	9	2197249-2197399	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|LS483350.1_2192120_2192351_-,NA|364aa|up_0|LS483350.1_2196139_2197231_+,NA|241aa|down_1|LS483350.1_2198521_2199244_-	NA|237aa|up_9|LS483350.1_2187730_2188441_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|LS483350.1_2188561_2189005_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|LS483350.1_2189204_2189618_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|LS483350.1_2190075_2191449_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|LS483350.1_2192120_2192351_-	NA	NA|313aa|up_4|LS483350.1_2192381_2193320_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|LS483350.1_2193754_2194420_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|LS483350.1_2194571_2194892_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|LS483350.1_2194893_2195874_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|LS483350.1_2196139_2197231_+	NA	NA|68aa|down_0|LS483350.1_2198259_2198463_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|241aa|down_1|LS483350.1_2198521_2199244_-	NA	NA|391aa|down_2|LS483350.1_2199445_2200618_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|92aa|down_3|LS483350.1_2200714_2200990_-	pfam02037, SAP, SAP domain	NA|286aa|down_4|LS483350.1_2202075_2202933_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|LS483350.1_2203000_2203783_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|LS483350.1_2204014_2205820_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|LS483350.1_2206500_2208039_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|LS483350.1_2208073_2210206_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|LS483350.1_2210217_2210652_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCA_900475055.1_42197_E02	LS483350	Staphylococcus aureus strain NCTC11940 genome assembly, chromosome: 1	10	2324062-2324255	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	14	2324085-2324117|2324085-2324117|2324085-2324117|2324085-2324117|2324085-2324117|2324141-2324176|2324141-2324176|2324141-2324176|2324141-2324176|2324141-2324176|2324200-2324232|2324200-2324232|2324200-2324232|2324200-2324232	LS483350.1_801861-801893|LS483350.1_1136391-1136359|LS483350.1_1345854-1345822|LS483350.1_1435099-1435131|LS483350.1_2598161-2598193|LS483350.1_1136338-1136303|LS483350.1_1804179-1804144|LS483350.1_250002-249967|LS483350.1_1616822-1616857|LS483350.1_1970298-1970333|LS483350.1_801861-801893|LS483350.1_1136391-1136359|LS483350.1_1345854-1345822|LS483350.1_2598161-2598193	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_8|LS483350.1_2314589_2314754_+,NA|106aa|up_7|LS483350.1_2314998_2315316_+,NA|84aa|up_4|LS483350.1_2320440_2320692_+,NA	NA|303aa|up_9|LS483350.1_2313548_2314457_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|LS483350.1_2314589_2314754_+	NA	NA|106aa|up_7|LS483350.1_2314998_2315316_+	NA	NA|1056aa|up_6|LS483350.1_2315502_2318670_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_5|LS483350.1_2318786_2320052_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_4|LS483350.1_2320440_2320692_+	NA	NA|255aa|up_3|LS483350.1_2320683_2321448_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_2|LS483350.1_2321609_2322050_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_1|LS483350.1_2322042_2323254_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_0|LS483350.1_2323355_2323706_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|341aa|down_0|LS483350.1_2324396_2325419_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|LS483350.1_2325438_2326038_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|LS483350.1_2326044_2326278_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|LS483350.1_2326283_2326730_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|LS483350.1_2326743_2327229_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|LS483350.1_2327225_2328485_-	cd00887, MoeA, MoeA family	NA|169aa|down_6|LS483350.1_2329043_2329550_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_7|LS483350.1_2329580_2330585_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_8|LS483350.1_2330754_2331360_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|224aa|down_9|LS483350.1_2331360_2332032_-	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
GCA_900475055.1_42197_E02	LS483350	Staphylococcus aureus strain NCTC11940 genome assembly, chromosome: 1	11	2820884-2820967	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTTCGAAATTCTCTGTGTTGGGACCC	26	1	4	2820910-2820941|2820910-2820941|2820910-2820941|2820910-2820941	LS483350.1_801961-801992|LS483350.1_802019-802050|LS483350.1_1061819-1061850|LS483350.1_1435143-1435174	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|64aa|up_7|LS483350.1_2814835_2815027_+,NA|166aa|up_5|LS483350.1_2816113_2816611_-,NA	NA|253aa|up_9|LS483350.1_2812115_2812874_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_8|LS483350.1_2812863_2814744_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_7|LS483350.1_2814835_2815027_+	NA	NA|134aa|up_6|LS483350.1_2815644_2816046_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|166aa|up_5|LS483350.1_2816113_2816611_-	NA	NA|250aa|up_4|LS483350.1_2816612_2817362_-	pfam15526, Ntox21, Novel toxin 21	NA|268aa|up_3|LS483350.1_2817380_2818184_-	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	NA|190aa|up_2|LS483350.1_2818994_2819564_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|LS483350.1_2819816_2820212_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|LS483350.1_2820279_2820633_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|LS483350.1_2821185_2822025_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|LS483350.1_2822067_2822787_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|LS483350.1_2822786_2824664_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|LS483350.1_2824730_2826110_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|116aa|down_4|LS483350.1_2826253_2826601_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|LS483350.1_2826726_2826864_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
