The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483348	Streptococcus lutetiensis strain NCTC8738 genome assembly, chromosome: 1	1966581	443005	492933	1966581	tRNA,protease,transposase	Heterosigma_akashiwo_virus(12.5%)	58	NA	NA
SQF41720.1|443005_443494_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF41721.1|443494_443692_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF41722.1|443859_445119_+|transposase	IS3 familytransposase orf2	transposase	NA	NA	NA	NA
SQF41723.1|446033_447026_+	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	37.6	1.1e-52
SQF41724.1|447129_447864_-	signal peptide containing protein	NA	NA	NA	NA	NA
SQF41725.1|448035_448878_-	signal peptide containing protein	NA	NA	NA	NA	NA
SQF41726.1|449000_449549_+	methylase family protein	NA	NA	NA	NA	NA
SQF41727.1|449580_450078_+	phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	32.5	3.3e-18
SQF41728.1|450055_451141_+	putative secreted protein containing a PDZ domain protein	NA	NA	NA	NA	NA
SQF41729.1|451271_451520_+	membrane protein	NA	NA	NA	NA	NA
SQF41730.1|451624_452953_+	phosphoesterase	NA	NA	NA	NA	NA
SQF41731.1|452982_453504_+	Hypothetical DUF1027 domain protein	NA	NA	NA	NA	NA
SQF41732.1|453564_454665_+	ribosomal RNA large subunit methyltransferase N	NA	NA	NA	NA	NA
SQF41733.1|454674_455181_+	glycopeptide antibiotics resistance protein	NA	NA	NA	NA	NA
SQF41734.1|455665_456232_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQF41735.1|456228_456477_+	ABC-type multidrug transport system, permease component	NA	NA	NA	NA	NA
SQF41736.1|456646_456841_+	ABC-2 type transport system permease protein	NA	NA	NA	NA	NA
SQF41737.1|456840_457011_+	sensor histidine kinase	NA	NA	NA	NA	NA
SQF41738.1|457031_457361_+	sensor histidine kinase	NA	NA	NA	NA	NA
SQF41739.1|457379_457721_+	sensor histidine kinase	NA	NA	NA	NA	NA
SQF41740.1|457929_458337_+	two-component response regulator	NA	NA	NA	NA	NA
SQF41741.1|458311_458515_+	two-component response regulator	NA	NA	NA	NA	NA
SQF41742.1|458640_459798_+	permease	NA	NA	NA	NA	NA
SQF41743.1|460246_461020_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	36.3	3.5e-27
SQF41744.1|461006_461588_+	phosphoribosyl anthranilate isomerase	NA	NA	NA	NA	NA
SQF41745.1|461661_462684_+	tryptophan synthase beta chain	NA	NA	NA	NA	NA
SQF41746.1|462798_463311_+	tryptophan synthase (alpha subunit)	NA	NA	NA	NA	NA
SQF41747.1|463276_463582_+	tryptophan synthase (alpha subunit)	NA	NA	NA	NA	NA
SQF41748.1|463617_464958_-	metal ion (Mn2+-iron) transporter (NRAMP) family protein	NA	NA	NA	NA	NA
SQF41749.1|465051_465702_-	type IV prepilin peptidase, putative	NA	NA	NA	NA	NA
SQF41750.1|465840_466365_+	Dps-like peroxide resistance protein	NA	NA	NA	NA	NA
SQF41751.1|466459_466705_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF41752.1|466697_467666_+	glucokinase	NA	NA	NA	NA	NA
SQF41753.1|467676_468057_+	Rhodanese-related sulfur transferase	NA	NA	NA	NA	NA
SQF41754.1|468071_468248_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF41755.1|468302_469118_+	signal peptide	NA	NA	NA	NA	NA
SQF41756.1|469305_471153_+	GTP-binding protein TypA	NA	NA	NA	NA	NA
SQF41757.1|471294_471567_+	membrane protein	NA	NA	NA	NA	NA
SQF41758.1|471709_473065_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase	NA	NA	NA	NA	NA
SQF41759.1|473067_474144_+	N-acetylglucosaminyl transferase	NA	NA	NA	NA	NA
SQF41760.1|474144_475380_+	putative cell division protein FtsQ (DivIB)	NA	NA	NA	NA	NA
SQF41761.1|475566_476355_-|transposase	transposase IS1239	transposase	H7BW61	unidentified_phage	31.7	2.4e-15
SQF41762.1|476641_476899_+	phage protein	NA	NA	NA	NA	NA
SQF41763.1|476908_477259_+	phage protein	NA	NA	NA	NA	NA
SQF41764.1|477551_477755_+	Cold shock protein CspA	NA	Q9AZD3	Lactococcus_phage	73.8	5.7e-22
SQF41765.1|478438_478807_+	phage protein	NA	NA	NA	NA	NA
SQF41766.1|479110_479296_+	paratox	NA	J7KBZ4	Streptococcus_phage	66.1	3.1e-14
SQF41767.1|479650_481024_+	cell division protein FtsA	NA	NA	NA	NA	NA
SQF41768.1|481043_482369_+	cell division protein FtsZ	NA	NA	NA	NA	NA
SQF41769.1|482368_483043_+	pyridoxal phosphate enzyme, YggS family	NA	NA	NA	NA	NA
SQF41770.1|483055_483667_+	cell division protein sepF	NA	NA	NA	NA	NA
SQF41771.1|483670_483928_+	YggT family protein	NA	NA	NA	NA	NA
SQF41772.1|483924_484710_+	YlmH protein	NA	NA	NA	NA	NA
SQF41773.1|485816_488615_+|tRNA	isoleucyl-tRNA synthetase	tRNA	A0A1V0SJ93	Klosneuvirus	28.2	1.3e-87
SQF41774.1|488701_489004_-	Domain of uncharacterised function (DUF1827)	NA	NA	NA	NA	NA
SQF41775.1|489075_489522_-	NTP pyrophosphohydrolase	NA	NA	NA	NA	NA
SQF41776.1|489723_492009_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	K4FB40	Cronobacter_phage	40.9	2.7e-128
SQF41777.1|492396_492933_+|transposase	IS861, transposase OrfA	transposase	NA	NA	NA	NA
>prophage 2
LS483348	Streptococcus lutetiensis strain NCTC8738 genome assembly, chromosome: 1	1966581	560861	571131	1966581		Staphylococcus_phage(37.5%)	10	NA	NA
SQF41848.1|560861_561992_+	acetylornithine aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	29.6	1.1e-24
SQF41849.1|562089_562647_+	oxidoreductase-associated protein	NA	NA	NA	NA	NA
SQF41850.1|563138_564194_+	riboflavin-specific deaminase	NA	A0A1V0SE20	Indivirus	32.5	5.1e-37
SQF41851.1|564193_564796_+	riboflavin synthase (alpha subunit)	NA	A0A2H4PQS5	Staphylococcus_phage	38.4	4.1e-31
SQF41852.1|564796_565975_+	GTP cyclohydrolase II/3,4-dihydroxy-2-butanone4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	50.0	3.9e-102
SQF41853.1|565995_566457_+	riboflavin synthase subunit beta	NA	A0A2H4PQS3	Staphylococcus_phage	56.7	3.5e-43
SQF41854.1|566519_567086_-	putative proton-coupled thiamine transporter YuaJ	NA	NA	NA	NA	NA
SQF41855.1|567321_568287_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.2	2.0e-128
SQF41856.1|568673_570833_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	62.5	8.0e-263
SQF41857.1|570903_571131_-	glutaredoxin	NA	V5USF1	Enterococcus_phage	42.5	1.8e-11
>prophage 3
LS483348	Streptococcus lutetiensis strain NCTC8738 genome assembly, chromosome: 1	1966581	685217	726207	1966581	terminase,tail,head,integrase,holin	Streptococcus_phage(80.0%)	64	685075:685089	698609:698623
685075:685089	attL	ACTTGAAAACATTAA	NA	NA	NA	NA
SQF41963.1|685217_686636_-|integrase	putative bacteriophage 370.1 integrase	integrase	A0A1B1IM01	Lactococcus_phage	48.1	3.8e-112
SQF41964.1|686774_687563_-	Domain of uncharacterised function DUF1828	NA	Q6SEA4	Lactobacillus_prophage	37.8	6.5e-37
SQF41965.1|687555_688023_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF41966.1|688040_688250_-	phage protein	NA	A0A1S5S8T6	Streptococcus_phage	87.9	3.6e-27
SQF41967.1|688262_688793_-	putative lipoprotein	NA	A0A1S5SAH9	Streptococcus_phage	44.5	1.1e-19
SQF41968.1|688848_689049_-	Uncharacterised protein	NA	A0A1S5SFF2	Streptococcus_phage	71.2	1.6e-21
SQF41969.1|689051_689834_-	Phage transcriptional repressor	NA	M1NS52	Streptococcus_phage	68.0	7.5e-94
SQF41970.1|690151_690364_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF41971.1|690482_690638_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF41972.1|690625_690832_+	transcription regulator	NA	J7KK54	Streptococcus_phage	64.1	5.3e-15
SQF41973.1|690863_691007_+	Uncharacterised protein	NA	Q708Q9	Streptococcus_phage	87.2	7.1e-19
SQF41974.1|691003_691171_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF41975.1|691347_691545_+	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	80.6	2.2e-18
SQF41976.1|691541_692330_+	Phage antirepressor protein	NA	A0A068A1Z1	Staphylococcus_phage	55.7	1.6e-80
SQF41977.1|692576_692756_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF41978.1|692752_692848_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF41979.1|692852_693083_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF41980.1|693082_693937_+	dnaD and phage-associated domain protein	NA	A0A2P0VK56	Streptococcus_phage	61.2	1.4e-64
SQF41981.1|693945_694215_+	Uncharacterised protein	NA	A0A060QNS3	Streptococcus_phage	35.8	5.3e-07
SQF41982.1|694214_694436_+	phage protein	NA	C5J991	Streptococcus_phage	58.5	8.2e-14
SQF41983.1|694435_694570_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF41984.1|694582_695302_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF41985.1|695312_696248_+	Recombinational DNA repair protein RecT (prophage associated)	NA	Q708Q2	Streptococcus_phage	68.9	1.9e-107
SQF41986.1|696240_697071_+	phage protein	NA	A0A1S5S8V6	Streptococcus_phage	73.7	1.3e-123
SQF41987.1|697075_697402_+	Uncharacterised protein	NA	M1PS51	Streptococcus_phage	59.4	2.5e-27
SQF41988.1|697617_697938_+	phage protein	NA	NA	NA	NA	NA
SQF41989.1|697972_698311_+	phage Holliday junction resolvase	NA	A0A1S5SDV6	Streptococcus_phage	51.3	1.2e-27
SQF41990.1|698307_698484_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF41991.1|698480_698735_+	Uncharacterised protein	NA	NA	NA	NA	NA
698609:698623	attR	ACTTGAAAACATTAA	NA	NA	NA	NA
SQF41992.1|698761_699169_+	prophage pi1 protein 29	NA	Q9AZN1	Lactococcus_phage	56.4	1.0e-30
SQF41993.1|699180_699429_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF41994.1|699431_699809_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF41995.1|699795_700029_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF41996.1|700021_700558_+	Protein of uncharacterised function (DUF1642)	NA	A0A1X9I5P8	Streptococcus_phage	38.7	3.6e-23
SQF41997.1|700554_700809_+	prophage Lp2 protein 33	NA	A0A0E3Y6J7	Fusobacterium_phage	42.6	7.7e-08
SQF41998.1|700810_701023_+	phage protein	NA	A0A1S5SEA6	Streptococcus_phage	55.1	7.9e-14
SQF41999.1|701137_701575_+	putative autolysin regulatory protein arpU	NA	Q708N7	Streptococcus_phage	56.0	2.4e-33
SQF42000.1|701691_702114_+|terminase	phage terminase small subunit	terminase	A0A141DZP6	Streptococcus_phage	69.2	2.7e-45
SQF42001.1|702091_703360_+|terminase	phage terminase large subunit	terminase	A0A141E1P5	Streptococcus_phage	83.4	6.7e-209
SQF42002.1|703370_704873_+	serine protein kinase	NA	A0A1S5SAF3	Streptococcus_phage	66.9	1.2e-188
SQF42003.1|704925_706455_+	NAD(+)--arginine ADP-ribosyltransferase EFV	NA	A0A1S5SAA4	Streptococcus_phage	54.5	6.0e-95
SQF42004.1|706451_706703_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF42005.1|706936_707503_+	methyl-accepting chemotaxis protein scaffolding protein	NA	A0A1S5SA01	Streptococcus_phage	53.6	1.2e-37
SQF42006.1|707516_708488_+	Uncharacterised protein	NA	Q708M6	Streptococcus_phage	63.1	2.2e-111
SQF42007.1|708501_708849_+	phage protein	NA	NA	NA	NA	NA
SQF42008.1|708881_709412_+	Uncharacterised protein	NA	A0A1S5SA99	Streptococcus_phage	67.6	1.0e-62
SQF42009.1|709411_709720_+|head,tail	Bacteriophage head-tail adaptor	head,tail	A0A1S5S9Y9	Streptococcus_phage	40.4	6.1e-15
SQF42010.1|709719_710127_+	phage protein, HK97 gp10 family	NA	A0A1S5S8X0	Streptococcus_phage	63.6	8.5e-41
SQF42011.1|710137_710506_+	Uncharacterised protein	NA	A0A1S5S936	Streptococcus_phage	43.8	2.9e-24
SQF42012.1|710505_711117_+	Uncharacterised protein	NA	A0A1S5S8X5	Streptococcus_phage	63.9	1.4e-71
SQF42013.1|711142_711526_+	Uncharacterised protein	NA	A0A1S5SAG5	Streptococcus_phage	41.8	2.9e-22
SQF42014.1|711573_711837_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF42015.1|711823_714946_+	phage protein	NA	A0A1S5SAA2	Streptococcus_phage	55.6	6.4e-19
SQF42016.1|714949_716419_+	putative minor structural protein	NA	A0A1P8VVL3	Streptococcus_phage	41.8	3.2e-106
SQF42017.1|716418_718764_+	phage protein	NA	L0P2R2	Streptococcus_phage	39.6	4.7e-184
SQF42018.1|718780_719905_+	prophage pi3 protein 11	NA	A0A1B1IN38	Lactococcus_phage	59.2	5.7e-119
SQF42019.1|719917_720115_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF42020.1|720056_722066_+	phage minor structural protein	NA	E7DNB8	Pneumococcus_phage	37.6	1.2e-74
SQF42021.1|722067_724134_+	prophage LambdaSa1, minor structural protein, putative	NA	K4K7M8	Streptococcus_phage	40.1	8.3e-124
SQF42022.1|724146_724494_+	Protein of uncharacterised function (DUF1366)	NA	A0A2I6QR31	Streptococcus_phage	61.9	8.0e-32
SQF42023.1|724465_724672_+	Uncharacterised protein	NA	A0A2I6QR42	Streptococcus_phage	87.5	5.3e-23
SQF42024.1|724693_725026_+	Uncharacterised protein	NA	Q56S82	Streptococcus_virus	90.0	3.6e-45
SQF42025.1|725038_725365_+|holin	holin	holin	Q56S81	Streptococcus_virus	93.5	9.8e-48
SQF42026.1|725361_726207_+	putative lysin	NA	C5IUL1	Streptococcus_phage	71.7	2.8e-118
>prophage 4
LS483348	Streptococcus lutetiensis strain NCTC8738 genome assembly, chromosome: 1	1966581	819874	913656	1966581	protease,transposase	Bacillus_phage(23.33%)	91	NA	NA
SQF42119.1|819874_820828_-|transposase	transposase IS1239	transposase	H7BUM7	unidentified_phage	36.4	1.9e-38
SQF42120.1|821003_821222_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF42121.1|821249_822149_-	pilin gene inverting-related protein	NA	A0A0U3ULR1	Bacillus_phage	25.0	6.8e-14
SQF42122.1|822480_822660_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQF42123.1|823155_824082_+	putative laminin adhesion	NA	NA	NA	NA	NA
SQF42124.1|824090_828074_+	Streptococcal histidine triad-family protein	NA	NA	NA	NA	NA
SQF42125.1|828540_828750_+	transketolase (TK)	NA	NA	NA	NA	NA
SQF42126.1|828840_829236_+	transketolase	NA	NA	NA	NA	NA
SQF42127.1|829174_830002_+	transketolase	NA	NA	NA	NA	NA
SQF42128.1|830617_830947_+	enterocin A Immunity protein	NA	NA	NA	NA	NA
SQF42129.1|831021_831240_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF42130.1|831267_832167_-	pilin gene inverting-related protein	NA	A0A0U3ULR1	Bacillus_phage	25.0	6.8e-14
SQF42131.1|832601_833861_+	preprotein translocase SecY family protein, putative	NA	NA	NA	NA	NA
SQF42132.1|834265_835843_+	Gap1	NA	NA	NA	NA	NA
SQF42133.1|835843_837412_+	Gap2	NA	NA	NA	NA	NA
SQF42134.1|837411_837966_+	Gap3	NA	NA	NA	NA	NA
SQF42135.1|837962_840341_+	SecA2	NA	NA	NA	NA	NA
SQF42136.1|840353_841856_+	glycosyl transferase, group 1 SP1758	NA	NA	NA	NA	NA
SQF42137.1|841852_843181_+	glycosyltransferase	NA	NA	NA	NA	NA
SQF42138.1|843180_843342_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF42139.1|843357_843573_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF42140.1|843590_844010_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF42141.1|843972_844314_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF42142.1|844340_845219_+	putative glycosyltransferase	NA	A0A1V0SAH6	Catovirus	30.5	1.7e-09
SQF42143.1|845224_846217_+	nucleotide sugar synthetase-like protein	NA	NA	NA	NA	NA
SQF42144.1|846308_846527_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF42145.1|846554_847454_-	pilin gene inverting-related protein	NA	A0A0U3ULR1	Bacillus_phage	25.0	4.0e-14
SQF42146.1|847901_848420_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF42147.1|848821_849037_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQF42148.1|849248_849959_-|transposase	transposase for insertion sequence element IS629	transposase	A0A2I7SC85	Paenibacillus_phage	50.4	8.4e-60
SQF42149.1|850514_852251_+	putative glycosyltransferase	NA	A0A1V0SAH6	Catovirus	30.6	1.9e-12
SQF42150.1|852250_853147_+	putative glycosyltransferase	NA	A0A1V0SAH6	Catovirus	40.2	7.7e-10
SQF42151.1|853465_858532_+	putative flagellar protein FliS	NA	NA	NA	NA	NA
SQF42152.1|858612_860193_+	DNA topoisomerase VI subunit B	NA	NA	NA	NA	NA
SQF42153.1|860294_861581_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	52.9	1.0e-119
SQF42154.1|861901_862270_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF42155.1|862980_863691_+|transposase	transposase for insertion sequence element IS629	transposase	A0A2I7SC85	Paenibacillus_phage	50.4	8.4e-60
SQF42156.1|864007_864544_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SQF42157.1|864837_865515_-	reductase	NA	NA	NA	NA	NA
SQF42158.1|865997_866414_-	NADPH-dependent FMN reductase	NA	A0A2P0ZL77	Lactobacillus_phage	62.3	3.5e-42
SQF42159.1|866426_867365_-	thiamine biosynthesis lipoprotein	NA	NA	NA	NA	NA
SQF42160.1|867498_867684_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
SQF42161.1|868001_868406_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF42162.1|868426_869239_+|transposase	putative transposase, ISSmu1	transposase	A0A1B1P773	Bacillus_phage	51.5	1.1e-63
SQF42163.1|869822_870413_+	thymidine kinase	NA	A0A249XZX5	Enterococcus_phage	54.8	2.9e-50
SQF42164.1|870449_871529_+	peptide chain release factor 1	NA	NA	NA	NA	NA
SQF42165.1|871528_872359_+	HemK protein	NA	NA	NA	NA	NA
SQF42166.1|872351_872951_+	translation factor	NA	A0A291ATS8	Pandoravirus	30.1	3.7e-16
SQF42167.1|873034_874285_+	glycine hydroxymethyltransferase	NA	A0A240F2Y9	Aeromonas_phage	53.7	1.0e-97
SQF42168.1|874328_875306_+	Pseudouridylate synthases, 23S RNA-specific	NA	NA	NA	NA	NA
SQF42169.1|875305_875908_+	lipoprotein	NA	A0A223LKM8	Bacillus_phage	43.8	3.1e-23
SQF42170.1|875953_877678_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	26.9	4.9e-45
SQF42171.1|877681_879418_+	ATP-binding cassette, subfamily B, bacterial	NA	W8CYL7	Bacillus_phage	29.8	5.8e-54
SQF42172.1|879494_880952_-	alpha-amylase	NA	NA	NA	NA	NA
SQF42173.1|881067_881682_-	membrane protein	NA	M1Q152	Streptococcus_phage	39.5	3.1e-34
SQF42174.1|882035_883001_+	pyruvate dehydrogenase E1 component alpha subunit	NA	NA	NA	NA	NA
SQF42175.1|883031_884036_+	pyruvate dehydrogenase E1 component subunit beta	NA	NA	NA	NA	NA
SQF42176.1|884051_885395_+	pyruvate/2-oxoglutarate dehydrogenase,dihydrolipoamide acetyl transferase E2 subunit	NA	NA	NA	NA	NA
SQF42177.1|885422_887162_+	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component	NA	A0A2K5B2C5	Erysipelothrix_phage	25.9	1.6e-35
SQF42178.1|887289_887622_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF42179.1|887804_888698_-	Permeases of the drug/metabolite transporter(DMT) superfamily	NA	NA	NA	NA	NA
SQF42180.1|888977_889256_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF42181.1|889210_889660_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF42182.1|889730_890720_+	putative lipoate-protein ligase A LplA	NA	NA	NA	NA	NA
SQF42183.1|891390_891525_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF42184.1|891588_891888_-	membrane protein	NA	NA	NA	NA	NA
SQF42185.1|892061_892271_+	putative flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
SQF42186.1|892234_892429_+	putative flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
SQF42187.1|892690_894055_+	mate efflux family protein	NA	NA	NA	NA	NA
SQF42188.1|894100_894883_-	macro domain-containing protein	NA	A0A2H4UW38	Bodo_saltans_virus	34.1	2.0e-22
SQF42189.1|895142_895565_+	coenzyme A disulfide reductase	NA	NA	NA	NA	NA
SQF42190.1|895557_895857_+	rhodanese family protein	NA	NA	NA	NA	NA
SQF42191.1|895920_896571_+	alpha/beta hydrolase	NA	S4W232	Pandoravirus	29.3	1.1e-10
SQF42192.1|896652_897054_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQF42193.1|897270_898833_+	bifunctional GMP synthase/glutamine amidotransferase	NA	A0A1V0SH76	Hokovirus	31.4	6.4e-20
SQF42194.1|899396_899783_+	glucosyltransferase-I	NA	NA	NA	NA	NA
SQF42195.1|900012_900207_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF42196.1|900236_900674_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF42197.1|900822_902148_+	MATE family multidrug efflux pump	NA	NA	NA	NA	NA
SQF42198.1|902427_902625_+|transposase	transposase, Gram-positive bacteria	transposase	NA	NA	NA	NA
SQF42199.1|902754_903327_+|transposase	transposase, Gram-positive bacteria	transposase	NA	NA	NA	NA
SQF42200.1|903277_903556_+|transposase	transposase, Gram-positive bacteria	transposase	NA	NA	NA	NA
SQF42201.1|903985_904384_+	signal peptide	NA	NA	NA	NA	NA
SQF42202.1|904483_905170_+	Pleiotropic regulator of exopolysaccharide synthesis, competence and biofilm formation Ftr, XRE family	NA	E8ZDN4	Streptococcus_phage	50.0	1.2e-58
SQF42203.1|905171_905375_+	Uncharacterised protein	NA	D0R0A4	Streptococcus_phage	47.7	4.6e-11
SQF42204.1|905375_906791_+	ImpB/MucB/SamB family protein	NA	M1Q231	Streptococcus_phage	73.0	1.3e-200
SQF42205.1|906792_907152_+	YolD-like protein	NA	E4ZFJ1	Streptococcus_phage	50.4	4.7e-19
SQF42206.1|907173_907359_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF42207.1|907488_908166_+	Methylase	NA	A0A2H4YF91	Aeromonas_phage	35.1	4.9e-09
SQF42208.1|908170_912535_+	reticulocyte binding protein	NA	A0A1V0SII8	Klosneuvirus	21.6	1.3e-25
SQF42209.1|912696_913656_+	abortive infection phage resistance protein	NA	A0A059NT88	Lactococcus_phage	48.7	3.4e-80
>prophage 5
LS483348	Streptococcus lutetiensis strain NCTC8738 genome assembly, chromosome: 1	1966581	1010166	1017666	1966581		Streptococcus_phage(100.0%)	11	NA	NA
SQF42314.1|1010166_1011063_-	putative conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	51.0	1.2e-79
SQF42315.1|1011081_1011870_-	lipoprotein, NLP/P60 family	NA	A0A1S5SEZ8	Streptococcus_phage	71.0	3.2e-108
SQF42316.1|1012160_1012481_-	TfoX domain-containing protein	NA	NA	NA	NA	NA
SQF42317.1|1012559_1013078_-	DUF1706 domain-containing protein	NA	NA	NA	NA	NA
SQF42318.1|1013160_1013382_-	FIG086557: Conjugation related protein	NA	A0A1S5SEY0	Streptococcus_phage	90.4	1.4e-29
SQF42319.1|1013526_1014732_-	transcriptional regulator protein	NA	A0A1S5SEX3	Streptococcus_phage	63.9	2.1e-151
SQF42320.1|1014914_1015808_-	Tn916 ORF21 FtsK/SpoIIIE family protein	NA	A0A1S5SFB5	Streptococcus_phage	72.1	3.8e-126
SQF42321.1|1015816_1016308_-	Uncharacterised protein	NA	A0A1S5SFB5	Streptococcus_phage	36.2	1.1e-18
SQF42322.1|1016401_1016839_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF42323.1|1016940_1017324_-	Tn916 ORF22 protein	NA	A0A1S5SF96	Streptococcus_phage	56.2	7.5e-31
SQF42324.1|1017339_1017666_-	Tn916 ORF23 protein	NA	A0A1S5SF38	Streptococcus_phage	52.4	8.1e-26
>prophage 6
LS483348	Streptococcus lutetiensis strain NCTC8738 genome assembly, chromosome: 1	1966581	1039076	1146884	1966581	tRNA,bacteriocin,protease,transposase	Bacillus_virus(11.54%)	118	NA	NA
SQF42342.1|1039076_1040030_-|transposase	transposase IS1239	transposase	Q9MBM9	Staphylococcus_prophage	35.1	5.8e-40
SQF42343.1|1040202_1041054_-	exfoliative toxin A/B	NA	NA	NA	NA	NA
SQF42344.1|1041224_1042190_-	signal peptide	NA	NA	NA	NA	NA
SQF42345.1|1042275_1042689_-	glyoxylase	NA	NA	NA	NA	NA
SQF42346.1|1042755_1043439_-	sortase	NA	NA	NA	NA	NA
SQF42347.1|1043500_1045954_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	34.5	1.0e-104
SQF42348.1|1046291_1047281_+	lactate dehydrogenase	NA	NA	NA	NA	NA
SQF42349.1|1047332_1048700_-	NADH oxidase	NA	NA	NA	NA	NA
SQF42350.1|1048809_1049766_-	simple sugar transport system permease	NA	NA	NA	NA	NA
SQF42351.1|1049767_1050826_-	sugar ABC transporter, permease protein,putative	NA	NA	NA	NA	NA
SQF42352.1|1050812_1052357_-	simple sugar transport system ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.0	3.2e-19
SQF42353.1|1052504_1053569_-	ABC transporter, substrat-binding protein	NA	A0A0A7DN02	Lactobacillus_phage	36.8	1.3e-48
SQF42354.1|1053758_1054424_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
SQF42355.1|1054927_1055512_-	ribosomal RNA small subunit methyltransferase C	NA	NA	NA	NA	NA
SQF42356.1|1055652_1056573_+	pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	32.7	1.1e-32
SQF42357.1|1056663_1056900_+	putative 30S ribosomal protein S20	NA	NA	NA	NA	NA
SQF42358.1|1057031_1057331_+|transposase	IS861, transposase OrfA	transposase	NA	NA	NA	NA
SQF42359.1|1057390_1057579_+	OrfA, transposon ISSsa2	NA	NA	NA	NA	NA
SQF42360.1|1057674_1057833_+|transposase	IS861, transposase OrfB	transposase	A0A1B1P773	Bacillus_phage	56.0	2.1e-08
SQF42361.1|1058052_1058394_+|transposase	IS861, transposase OrfB	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	49.6	4.6e-24
SQF42362.1|1058436_1059675_-	putative histidine kinase sensor CiaH	NA	Q8QNA2	Ectocarpus_siliculosus_virus	36.8	2.4e-09
SQF42363.1|1059754_1060429_-	DNA-binding response regulator CiaR	NA	NA	NA	NA	NA
SQF42364.1|1060596_1063140_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.9	2.5e-66
SQF42365.1|1063370_1064024_-	phosphate transport system protein	NA	NA	NA	NA	NA
SQF42366.1|1064054_1064813_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.0	1.7e-18
SQF42367.1|1064824_1065628_-	Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)	NA	G3M9Y6	Bacillus_virus	29.0	1.3e-16
SQF42368.1|1065638_1066526_-	phosphate transport system permease	NA	NA	NA	NA	NA
SQF42369.1|1066515_1067433_-	phosphate transport system permease	NA	NA	NA	NA	NA
SQF42370.1|1067442_1068309_-	ABC transporter, phosphate-binding protein	NA	NA	NA	NA	NA
SQF42371.1|1068453_1069764_-	RNA methylase	NA	NA	NA	NA	NA
SQF42372.1|1070121_1071477_-	glutathione reductase	NA	NA	NA	NA	NA
SQF42373.1|1071490_1071823_-|bacteriocin	bacteriocin transport accessory protein, putative	bacteriocin	NA	NA	NA	NA
SQF42374.1|1071917_1072241_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
SQF42375.1|1072346_1073171_-	zinc transporter, ZIP family	NA	NA	NA	NA	NA
SQF42376.1|1073269_1074034_-	inositol monophosphatase family protein	NA	NA	NA	NA	NA
SQF42377.1|1074023_1074299_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF42378.1|1074380_1074785_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF42379.1|1074815_1075760_-	riboflavin biosynthesis protein RibC	NA	NA	NA	NA	NA
SQF42380.1|1075773_1076655_-|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
SQF42381.1|1076729_1078091_-	putative sensory box protein	NA	NA	NA	NA	NA
SQF42382.1|1078083_1078323_-	Domain of uncharacterised function (DUF1858)	NA	NA	NA	NA	NA
SQF42383.1|1078410_1079748_-	Serine/threonine-protein kinase MRCK beta	NA	NA	NA	NA	NA
SQF42384.1|1079819_1080416_-	Restriction endonuclease S subunit	NA	NA	NA	NA	NA
SQF42385.1|1080527_1083161_-	putative ABC transporter permease	NA	NA	NA	NA	NA
SQF42386.1|1083171_1083873_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	1.9e-35
SQF42387.1|1084014_1084563_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SQF42388.1|1084606_1085098_-	thiol peroxidase	NA	NA	NA	NA	NA
SQF42389.1|1085324_1085639_-	DNA alkylation repair protein	NA	NA	NA	NA	NA
SQF42390.1|1086067_1088419_-	ATP-dependent DNA helicase	NA	A7KV33	Bacillus_phage	41.4	3.3e-129
SQF42391.1|1088525_1088993_-	glutamine amidotransferase	NA	NA	NA	NA	NA
SQF42392.1|1089130_1089697_-	pyridoxine biosynthesis protein	NA	NA	NA	NA	NA
SQF42393.1|1089718_1089874_-	pyridoxine biosynthesis protein	NA	NA	NA	NA	NA
SQF42394.1|1089978_1090353_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF42395.1|1090349_1091378_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF42396.1|1091867_1093199_+	alanine or glycine:cation symporter	NA	NA	NA	NA	NA
SQF42397.1|1093233_1093908_-	HAD-superfamily hydrolase / phosphatase	NA	NA	NA	NA	NA
SQF42398.1|1093931_1094150_-	N-acetylmuramidase/lysin, putative	NA	NA	NA	NA	NA
SQF42399.1|1094262_1095042_-|transposase	transposase for insertion sequence element IS629	transposase	A0A2I7SC85	Paenibacillus_phage	50.8	2.4e-68
SQF42400.1|1095752_1096121_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF42401.1|1097129_1098452_-	VncS, histidine kinase	NA	W8CYF6	Bacillus_phage	26.2	2.4e-12
SQF42402.1|1098448_1099105_-	DNA-binding response regulator VncR	NA	NA	NA	NA	NA
SQF42403.1|1099251_1100631_-	ABC transporter, transmembrane protein Vexp3	NA	NA	NA	NA	NA
SQF42404.1|1100686_1101334_-	ABC transporter, ATP-binding protein Vexp2	NA	G9BWD6	Planktothrix_phage	33.8	1.4e-21
SQF42405.1|1101346_1102624_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
SQF42406.1|1103028_1103583_+|transposase	ISSag8, transposase	transposase	A0A1X9I5T2	Streptococcus_phage	74.6	4.4e-80
SQF42407.1|1103754_1104084_+|transposase	transposase for IS660	transposase	A0A1X9I5T2	Streptococcus_phage	62.6	3.5e-37
SQF42408.1|1104616_1104838_-	cell surface-associated protein autolysin	NA	NA	NA	NA	NA
SQF42409.1|1104964_1105324_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
SQF42410.1|1105336_1106206_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
SQF42411.1|1106324_1106432_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
SQF42412.1|1106527_1107181_-	GDSL family lipase/acylhydrolase	NA	NA	NA	NA	NA
SQF42413.1|1107206_1108025_-	HAD-superfamily hydrolase / phosphatase	NA	NA	NA	NA	NA
SQF42414.1|1108172_1109498_-	PTS system, lactose/cellobiose family IIC subunit	NA	NA	NA	NA	NA
SQF42415.1|1109538_1110051_-	cellobiose phosphotransferase system IIA component	NA	NA	NA	NA	NA
SQF42416.1|1110073_1110388_-	cellobiose phosphotransferase system IIA component	NA	NA	NA	NA	NA
SQF42417.1|1110406_1112380_-	lichenan operon transcriptional antiterminator	NA	NA	NA	NA	NA
SQF42418.1|1112430_1112748_-	PTS system cellobiose-specific transporter subunit IIB	NA	NA	NA	NA	NA
SQF42419.1|1112983_1113331_-	membrane protein	NA	NA	NA	NA	NA
SQF42420.1|1113339_1113669_-	signal peptide	NA	NA	NA	NA	NA
SQF42421.1|1113834_1114134_-	signal peptide	NA	NA	NA	NA	NA
SQF42422.1|1114328_1114568_-	MtN3/saliva family protein	NA	NA	NA	NA	NA
SQF42423.1|1114665_1116099_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
SQF42424.1|1116208_1117777_-	ubiquinone biosynthesis protein	NA	E5ERK4	Ostreococcus_lucimarinus_virus	31.6	2.3e-41
SQF42425.1|1117793_1118081_-	phasin family protein	NA	NA	NA	NA	NA
SQF42426.1|1118530_1119457_+	putative transcriptional regulator	NA	NA	NA	NA	NA
SQF42427.1|1119545_1120154_-|transposase	IS861, transposase OrfB	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	45.5	4.7e-43
SQF42428.1|1120160_1120265_-|transposase	IS861, transposase OrfB	transposase	NA	NA	NA	NA
SQF42429.1|1120360_1120549_-|transposase	IS861, transposase OrfA	transposase	NA	NA	NA	NA
SQF42430.1|1120970_1121243_-	PTS system,beta-glucoside-specificIIABCcomponent	NA	NA	NA	NA	NA
SQF42431.1|1121232_1122159_-	PTS system beta-glucoside-specific transporter subunit IIBCA	NA	NA	NA	NA	NA
SQF42432.1|1122204_1122534_-	PTS system beta-glucoside-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQF42433.1|1122567_1122882_-	PTS system beta-glucoside-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQF42434.1|1123490_1124075_-	transcription anti-terminator, BglG family	NA	NA	NA	NA	NA
SQF42435.1|1124274_1125807_-	(voltage-gated) chloride channel family protein	NA	NA	NA	NA	NA
SQF42436.1|1125954_1127028_-	spermidine/putrescine ABC transporter,spermidine /putrescine-binding protein	NA	NA	NA	NA	NA
SQF42437.1|1127020_1127812_-	spermidine/putrescine ABC transporter,permease protein	NA	NA	NA	NA	NA
SQF42438.1|1127808_1128600_-	spermidine/putrescine ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	27.3	3.2e-15
SQF42439.1|1128586_1129738_-	Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)	NA	Q6GZ03	Mycoplasma_phage	42.2	1.5e-34
SQF42440.1|1129765_1130668_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
SQF42441.1|1130850_1131330_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA	NA
SQF42442.1|1131326_1131731_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
SQF42443.1|1131756_1132557_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	31.2	3.4e-25
SQF42444.1|1132591_1133155_-	GTP cyclohydrolase I	NA	E7DN69	Pneumococcus_phage	51.1	3.9e-44
SQF42445.1|1133191_1134445_-	folyl-polyglutamate synthetase	NA	NA	NA	NA	NA
SQF42446.1|1135105_1135930_-	anthranilate/para-aminobenzoate synthase	NA	NA	NA	NA	NA
SQF42447.1|1136020_1136296_-	anthranilate/para-aminobenzoate synthase	NA	NA	NA	NA	NA
SQF42448.1|1136352_1136847_-	chloramphenicol-sensitive protein RarD	NA	NA	NA	NA	NA
SQF42449.1|1136794_1137238_-	chloramphenicol-sensitive protein RarD	NA	NA	NA	NA	NA
SQF42450.1|1137224_1138109_-	Homoserine kinase	NA	NA	NA	NA	NA
SQF42451.1|1138146_1139433_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
SQF42452.1|1139653_1140595_+	putative deacetylase	NA	NA	NA	NA	NA
SQF42453.1|1140637_1140826_-	putative extracellular protein	NA	NA	NA	NA	NA
SQF42454.1|1141078_1141693_+	transcriptional regulator	NA	NA	NA	NA	NA
SQF42455.1|1141724_1142051_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF42456.1|1142177_1142546_-	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
SQF42457.1|1142614_1143118_-	50S ribosomal protein L10	NA	NA	NA	NA	NA
SQF42458.1|1143453_1144407_+|transposase	transposase IS1239	transposase	H7BUM7	unidentified_phage	36.8	2.4e-38
SQF42459.1|1144775_1146884_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.8	8.7e-121
>prophage 7
LS483348	Streptococcus lutetiensis strain NCTC8738 genome assembly, chromosome: 1	1966581	1175037	1188259	1966581	tRNA	Bacillus_phage(30.0%)	14	NA	NA
SQF42491.1|1175037_1175448_-	polypeptide deformylase	NA	A0A2I7QLT9	Vibrio_phage	39.8	4.4e-13
SQF42492.1|1175638_1175953_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQF42493.1|1176110_1177460_-	glutamate dehydrogenase	NA	NA	NA	NA	NA
SQF42494.1|1177696_1178194_+	membrane protein	NA	NA	NA	NA	NA
SQF42495.1|1178230_1178722_-	7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	61.6	4.3e-47
SQF42496.1|1178871_1179183_-	radical SAM domain-containing protein	NA	E7DN68	Pneumococcus_phage	40.7	3.0e-14
SQF42497.1|1179290_1179590_-	radical SAM domain-containing protein	NA	A0A1U9WRB6	Streptococcus_virus	52.2	1.0e-22
SQF42498.1|1179582_1180029_-	6-pyruvoyl tetrahydrobiopterin synthase, putative	NA	J9PV91	Bacillus_phage	58.2	3.8e-42
SQF42499.1|1180028_1180682_-	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.0	3.0e-56
SQF42500.1|1180846_1182616_-	ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.7	1.0e-58
SQF42501.1|1182618_1184358_-	ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	1.3e-37
SQF42502.1|1184465_1185161_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF42503.1|1185188_1187057_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	33.0	2.7e-65
SQF42504.1|1187053_1188259_-|tRNA	tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	48.0	2.1e-42
>prophage 8
LS483348	Streptococcus lutetiensis strain NCTC8738 genome assembly, chromosome: 1	1966581	1522065	1531923	1966581		Streptococcus_phage(75.0%)	12	NA	NA
SQF42825.1|1522065_1523157_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	81.8	7.8e-174
SQF42826.1|1523291_1523921_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
SQF42827.1|1524037_1524379_-	nitrogen regulatory protein P-II 1	NA	NA	NA	NA	NA
SQF42828.1|1524459_1525695_-	ammonium transporter	NA	NA	NA	NA	NA
SQF42829.1|1526043_1526916_-	putative S-adenosyl-methionine-dependent methyl transferase, YraL family	NA	M1PLC5	Streptococcus_phage	74.7	5.8e-119
SQF42830.1|1526925_1527246_-	DNA replication intiation control protein	NA	M1PFV3	Streptococcus_phage	62.3	9.1e-30
SQF42831.1|1527238_1528039_-	putative PSP1-like protein	NA	NA	NA	NA	NA
SQF42832.1|1528035_1528911_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	47.9	2.2e-70
SQF42833.1|1528931_1529558_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	65.6	4.6e-70
SQF42834.1|1529652_1530312_-	acetoin utilization protein AcuB	NA	M1NSC5	Streptococcus_phage	63.8	1.7e-70
SQF42835.1|1530448_1531159_-	branched-chain amino acid transport system ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.2	3.3e-16
SQF42836.1|1531158_1531923_-	branched-chain amino acid transport system ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.8	7.2e-17
>prophage 9
LS483348	Streptococcus lutetiensis strain NCTC8738 genome assembly, chromosome: 1	1966581	1679133	1684452	1966581		Lactobacillus_phage(85.71%)	10	NA	NA
SQF42995.1|1679133_1679292_+	NADPH-dependent FMN reductase	NA	A0A2P0ZL77	Lactobacillus_phage	54.3	5.3e-07
SQF42996.1|1679377_1679668_+	NADPH-dependent FMN reductase	NA	A0A2P0ZL77	Lactobacillus_phage	54.2	1.2e-20
SQF42997.1|1679678_1679942_+	NADPH-dependent FMN reductase	NA	A0A2P0ZL82	Lactobacillus_phage	51.8	1.3e-13
SQF42998.1|1679998_1680727_+	NADPH-dependent FMN reductase	NA	A0A2P0ZL82	Lactobacillus_phage	63.9	1.0e-73
SQF42999.1|1680723_1681185_+	NADPH-dependent FMN reductase	NA	A0A2P0ZL82	Lactobacillus_phage	56.0	2.2e-40
SQF43000.1|1681211_1682102_+	NADPH-dependent FMN reductase	NA	A0A2P0ZL82	Lactobacillus_phage	67.6	2.0e-111
SQF43001.1|1682487_1682868_-	putative lipoprotein	NA	NA	NA	NA	NA
SQF43002.1|1682940_1683576_-	putative membrane protein yetF	NA	NA	NA	NA	NA
SQF43003.1|1683579_1684029_-	Protein of uncharacterised function (DUF3290)	NA	NA	NA	NA	NA
SQF43004.1|1684137_1684452_-	thioredoxin 1	NA	A0A1J0GW78	Streptomyces_phage	47.3	3.9e-17
>prophage 10
LS483348	Streptococcus lutetiensis strain NCTC8738 genome assembly, chromosome: 1	1966581	1822259	1873488	1966581	tRNA,protease,transposase	Streptococcus_phage(20.0%)	50	NA	NA
SQF43146.1|1822259_1822826_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF43147.1|1822946_1823330_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF43148.1|1823873_1824410_+	ATPase involved in DNA repair	NA	NA	NA	NA	NA
SQF43149.1|1824484_1826572_-	Cu2+-Cu+-Ag+-P-type ATPase	NA	A0A218MNH6	uncultured_virus	31.8	8.8e-65
SQF43150.1|1826717_1827032_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43151.1|1827053_1827593_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF43152.1|1828163_1829513_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQF43153.1|1829950_1830457_-	cytosine deaminase	NA	NA	NA	NA	NA
SQF43154.1|1830456_1831233_-	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA	NA
SQF43155.1|1831308_1831851_-	BioY family protein	NA	NA	NA	NA	NA
SQF43156.1|1832298_1833441_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	2.0e-87
SQF43157.1|1833705_1834458_+	membrane protein	NA	NA	NA	NA	NA
SQF43158.1|1834543_1835044_-	Ferric uptake regulation protein	NA	NA	NA	NA	NA
SQF43159.1|1835274_1835697_-	putative CoA-binding protein	NA	NA	NA	NA	NA
SQF43160.1|1835801_1838456_-	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	32.0	2.5e-64
SQF43161.1|1838717_1839662_-	permease	NA	NA	NA	NA	NA
SQF43162.1|1839793_1841041_-	Uncharacterized membrane protein	NA	NA	NA	NA	NA
SQF43163.1|1841285_1842578_-	adenylosuccinate synthetase	NA	G5CQQ4	Megavirus	36.1	7.3e-70
SQF43164.1|1842987_1845237_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
SQF43165.1|1845334_1846153_+	putative membrane associated protein	NA	M1PFV6	Streptococcus_phage	56.8	9.4e-31
SQF43166.1|1846171_1847443_+	toxic anion resistance protein	NA	M1PLC8	Streptococcus_phage	70.0	6.8e-137
SQF43167.1|1847841_1848180_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43168.1|1848191_1850102_-	Inner membrane protein yeeR	NA	NA	NA	NA	NA
SQF43169.1|1850206_1851094_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43170.1|1851396_1852263_+	HSP33-like chaperonin	NA	NA	NA	NA	NA
SQF43171.1|1852255_1853233_+	transcriptional regulator	NA	NA	NA	NA	NA
SQF43172.1|1853318_1855760_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	37.1	1.1e-130
SQF43173.1|1855756_1856218_-	transcriptional regulator CtsR	NA	NA	NA	NA	NA
SQF43174.1|1856475_1856940_+	putative small multi-drug export proteins	NA	NA	NA	NA	NA
SQF43175.1|1857039_1858077_-	elongation factor EF-Ts	NA	NA	NA	NA	NA
SQF43176.1|1858185_1858953_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
SQF43177.1|1859506_1860460_+|transposase	transposase IS1239	transposase	H7BWC8	unidentified_phage	35.9	5.3e-41
SQF43178.1|1860560_1861514_+	Merops family S66 LD-carboxypeptidase	NA	NA	NA	NA	NA
SQF43179.1|1861601_1862108_-	transporter accessory protein, putative	NA	NA	NA	NA	NA
SQF43180.1|1862114_1862489_-	membrane protein	NA	NA	NA	NA	NA
SQF43181.1|1862481_1862757_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43182.1|1862983_1864102_-	membrane protein	NA	NA	NA	NA	NA
SQF43183.1|1864293_1864518_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQF43184.1|1864560_1864773_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQF43185.1|1864822_1865038_-	membrane protein	NA	NA	NA	NA	NA
SQF43186.1|1865522_1865612_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43187.1|1865603_1866494_-	putative transcriptional regulator MutR	NA	NA	NA	NA	NA
SQF43188.1|1866724_1868620_-	putative endopeptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	31.8	4.7e-73
SQF43189.1|1868783_1869071_-	C-type sortase	NA	NA	NA	NA	NA
SQF43190.1|1869086_1869326_-	C-type sortase	NA	NA	NA	NA	NA
SQF43191.1|1869476_1870106_-	putative pilus subunit protein	NA	NA	NA	NA	NA
SQF43192.1|1870235_1870520_-	putative pilus subunit protein	NA	NA	NA	NA	NA
SQF43193.1|1870568_1871933_-	Cna protein B-type domain	NA	NA	NA	NA	NA
SQF43194.1|1871929_1872172_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43195.1|1872534_1873488_+|transposase	transposase IS1239	transposase	H7BUM7	unidentified_phage	36.4	1.4e-38
>prophage 11
LS483348	Streptococcus lutetiensis strain NCTC8738 genome assembly, chromosome: 1	1966581	1893058	1950109	1966581	tRNA,transposase	Streptococcus_phage(35.29%)	65	NA	NA
SQF43217.1|1893058_1894750_+|tRNA	arginyl-tRNA synthetase	tRNA	A0A2I2L3K1	Orpheovirus	32.6	5.2e-76
SQF43218.1|1894797_1896216_-	lipase	NA	NA	NA	NA	NA
SQF43219.1|1896319_1897186_-	putative transporter	NA	M1Q1P6	Streptococcus_phage	39.6	8.7e-51
SQF43220.1|1897230_1898169_-	membrane protein	NA	NA	NA	NA	NA
SQF43221.1|1898161_1899910_-|tRNA	aspartyl-tRNA synthetase	tRNA	A0A1V0SAC0	Catovirus	26.0	5.0e-13
SQF43222.1|1900065_1901343_-|tRNA	histidyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQF43223.1|1901631_1901808_+	LSU ribosomal protein L32p	NA	NA	NA	NA	NA
SQF43224.1|1901823_1901973_+	LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent	NA	NA	NA	NA	NA
SQF43225.1|1902121_1903042_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43226.1|1903031_1903811_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43227.1|1904064_1904748_-	EcsC protein family	NA	NA	NA	NA	NA
SQF43228.1|1905254_1905554_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43229.1|1906070_1906256_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43230.1|1906631_1907513_-	Transcription regulator	NA	NA	NA	NA	NA
SQF43231.1|1907589_1908642_-	membrane protein	NA	NA	NA	NA	NA
SQF43232.1|1908684_1909056_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43233.1|1909059_1909176_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43234.1|1909754_1909994_+	putative protein YtgB	NA	NA	NA	NA	NA
SQF43235.1|1910055_1910622_+	membrane protein	NA	NA	NA	NA	NA
SQF43236.1|1910633_1910804_+	putative lipoprotein	NA	NA	NA	NA	NA
SQF43237.1|1910818_1911379_+	General stress protein, Gls24 family	NA	NA	NA	NA	NA
SQF43238.1|1911462_1911666_+	CsbD-like protein	NA	NA	NA	NA	NA
SQF43239.1|1911868_1912477_-|transposase	IS861, transposase OrfB	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	45.8	1.4e-42
SQF43240.1|1912483_1912588_-|transposase	IS861, transposase OrfB	transposase	NA	NA	NA	NA
SQF43241.1|1912683_1913220_-|transposase	IS861, transposase OrfA	transposase	NA	NA	NA	NA
SQF43242.1|1913298_1913652_-	membrane protein	NA	NA	NA	NA	NA
SQF43243.1|1913871_1916199_-	cell wall surface protein	NA	NA	NA	NA	NA
SQF43244.1|1916330_1916867_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
SQF43245.1|1917021_1917426_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF43246.1|1917675_1918287_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
SQF43247.1|1918543_1918816_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQF43248.1|1918840_1920202_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	62.4	3.0e-154
SQF43249.1|1920235_1920688_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
SQF43250.1|1920684_1922664_-	putative signaling protein consisting of a modified GGDEF domain and a DHH domain-containing protein	NA	NA	NA	NA	NA
SQF43251.1|1922773_1924678_-	glucose inhibited division protein A	NA	NA	NA	NA	NA
SQF43252.1|1924986_1926108_-|tRNA	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA	NA	NA	NA	NA
SQF43253.1|1926366_1927038_+	L-serine dehydratase beta subunit	NA	NA	NA	NA	NA
SQF43254.1|1927049_1927922_+	L-serine dehydratase alpha subunit	NA	NA	NA	NA	NA
SQF43255.1|1928010_1928646_+	HAD-superfamily hydrolase/phosphatase	NA	NA	NA	NA	NA
SQF43256.1|1928674_1929343_-	transglycosylase	NA	Q4Z8Z7	Staphylococcus_phage	73.5	7.5e-26
SQF43257.1|1929595_1930195_-	LysM repeat-containing protein	NA	A0A0E3XCL7	Enterococcus_phage	47.3	1.2e-22
SQF43258.1|1930446_1931616_-	Integrase	NA	A0A1X9I5Y5	Streptococcus_phage	47.2	7.0e-88
SQF43259.1|1931746_1932325_-	DNA polymerase III subunit beta	NA	A0A286QNE7	Streptococcus_phage	55.9	2.4e-12
SQF43260.1|1932644_1933292_+	prophage Sa05 BRO domain-containing protein	NA	NA	NA	NA	NA
SQF43261.1|1933471_1933669_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43262.1|1933681_1933930_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43263.1|1934138_1934294_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43264.1|1934286_1934427_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43265.1|1934431_1934707_+	phage related protein	NA	A0A1X9I5U9	Streptococcus_phage	41.4	1.1e-07
SQF43266.1|1934723_1934996_+	phage protein	NA	NA	NA	NA	NA
SQF43267.1|1936057_1936480_+	putative autolysin regulatory protein arpU	NA	NA	NA	NA	NA
SQF43268.1|1937377_1937686_+|transposase	ISSag3, transposase	transposase	NA	NA	NA	NA
SQF43269.1|1938017_1938971_+|transposase	transposase IS1239	transposase	H7BWC8	unidentified_phage	35.9	5.3e-41
SQF43270.1|1939336_1939912_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF43271.1|1940174_1941242_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43272.1|1941408_1941669_-	IS1272 ORF1 and ORF2	NA	NA	NA	NA	NA
SQF43273.1|1941825_1942404_-	IS1272 ORF1 and ORF2	NA	A0A146ICT8	Staphylococcus_phage	65.2	1.9e-25
SQF43274.1|1942459_1942885_-	IS1272 ORF1 and ORF2	NA	A0A146ICT8	Staphylococcus_phage	40.8	2.3e-20
SQF43275.1|1943556_1944351_-	ABC transporter permease	NA	NA	NA	NA	NA
SQF43276.1|1944343_1945186_-	cobalt/nickel transport system ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.5	6.8e-16
SQF43277.1|1945161_1946001_-	cobalt/nickel transport system ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	5.9e-20
SQF43278.1|1945997_1946552_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
SQF43279.1|1946564_1947509_-	putative membrane associated protein	NA	NA	NA	NA	NA
SQF43280.1|1947574_1948864_-	Peptidase, M16 family	NA	A0A0G2Y5U8	Acanthamoeba_polyphaga_mimivirus	33.3	2.6e-19
SQF43281.1|1948864_1950109_-	putative Zn-dependent peptidase	NA	A0A1X9I714	Streptococcus_phage	43.0	8.0e-90
