assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900475065.1_42545_C02	LS483348	Streptococcus lutetiensis strain NCTC8738 genome assembly, chromosome: 1	1	854806-860063	1	CRT	no		cas3,DEDDh,csa3,csm6,WYL,csn2,cas2,cas1,cas9,DinG	Orphan	TGAATCAGTNAGNGAATC	18	16	23	855880-855909|855964-855981|856036-856053|856120-856137|856120-856137|856120-856137|856156-856173|856156-856173|856192-856209|856384-856413|856732-856761|857032-857061|857128-857145|857128-857145|857128-857145|857164-857181|857164-857181|857200-857217|857392-857421|858148-858177|859500-859529|859752-859769|859752-859769	LS483348.1_854032-854061|LS483348.1_854032-854049|LS483348.1_854032-854049|LS483348.1_854020-854037|LS483348.1_854044-854061|LS483348.1_1008786-1008803|LS483348.1_854020-854037|LS483348.1_854044-854061|LS483348.1_854032-854049|LS483348.1_860052-860081|LS483348.1_860052-860081|LS483348.1_860052-860081|LS483348.1_854020-854037|LS483348.1_854044-854061|LS483348.1_1008786-1008803|LS483348.1_854020-854037|LS483348.1_854044-854061|LS483348.1_854032-854049|LS483348.1_860052-860081|LS483348.1_860052-860081|LS483348.1_860052-860081|LS483348.1_854020-854037|LS483348.1_854044-854061	NA	92	92	Orphan	cas3,DEDDh,csa3,csm6,WYL,csn2,cas2,cas1,cas9,DinG	NA|114aa|up_9|LS483348.1_843972_844314_+,NA|135aa|down_8|LS483348.1_868001_868406_+	NA|114aa|up_9|LS483348.1_843972_844314_+	NA	NA|293aa|up_8|LS483348.1_844340_845219_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|331aa|up_7|LS483348.1_845224_846217_+	PRK09814, PRK09814, sugar transferase	NA|73aa|up_6|LS483348.1_846308_846527_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|300aa|up_5|LS483348.1_846554_847454_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|173aa|up_4|LS483348.1_847901_848420_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|72aa|up_3|LS483348.1_848821_849037_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|237aa|up_2|LS483348.1_849248_849959_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|579aa|up_1|LS483348.1_850514_852251_+	TIGR03728, glyco_access_1, glycosyltransferase, SP_1767 family	NA|299aa|up_0|LS483348.1_852250_853147_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|429aa|down_0|LS483348.1_860294_861581_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|123aa|down_1|LS483348.1_861901_862270_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|237aa|down_2|LS483348.1_862980_863691_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|179aa|down_3|LS483348.1_864007_864544_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|226aa|down_4|LS483348.1_864837_865515_-	COG2461, COG2461, Uncharacterized conserved protein [Function unknown]	NA|139aa|down_5|LS483348.1_865997_866414_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|313aa|down_6|LS483348.1_866426_867365_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|62aa|down_7|LS483348.1_867498_867684_-	PRK02289, PRK02289, 4-oxalocrotonate tautomerase; Provisional	NA|135aa|down_8|LS483348.1_868001_868406_+	NA	NA|271aa|down_9|LS483348.1_868426_869239_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed
GCA_900475065.1_42545_C02	LS483348	Streptococcus lutetiensis strain NCTC8738 genome assembly, chromosome: 1	2	1321033-1321861	1,1,2	PILER-CR,CRISPRCasFinder,CRT	no	csn2,cas2,cas1,cas9	cas3,DEDDh,csa3,csm6,WYL,csn2,cas2,cas1,cas9,DinG	Type II-B,Type II-C,Type II-A	GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	12,12,12	12	TypeII-B,TypeII-C,TypeII-A	cas3,DEDDh,csa3,csm6,WYL,csn2,cas2,cas1,cas9,DinG	NA,NA	NA|616aa|up_9|LS483348.1_1309464_1311312_-	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|101aa|up_8|LS483348.1_1311363_1311666_-	TIGR03652, FeS_repair_RIC, iron-sulfur cluster repair di-iron protein	NA|250aa|up_7|LS483348.1_1311831_1312581_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|75aa|up_6|LS483348.1_1312819_1313044_-	cd09159, PLDc_ybhO_like_2, Catalytic domain, repeat 2, of Escherichia coli cardiolipin synthase ybhO and similar proteins	NA|454aa|up_5|LS483348.1_1313218_1314580_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|481aa|up_4|LS483348.1_1314688_1316131_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|275aa|up_3|LS483348.1_1316230_1317055_-	PRK11898, PRK11898, prephenate dehydratase; Provisional	NA|159aa|up_2|LS483348.1_1317051_1317528_-	PRK00131, aroK, shikimate kinase; Reviewed	NA|428aa|up_1|LS483348.1_1317520_1318804_-	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|612aa|up_0|LS483348.1_1318937_1320773_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|139aa|down_0|LS483348.1_1321950_1322367_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|109aa|down_1|LS483348.1_1323888_1324215_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|62aa|down_2|LS483348.1_1324228_1324414_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	csn2|221aa|down_3|LS483348.1_1324509_1325172_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|110aa|down_4|LS483348.1_1325161_1325491_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_5|LS483348.1_1325502_1326369_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1374aa|down_6|LS483348.1_1326368_1330490_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|220aa|down_7|LS483348.1_1330919_1331579_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|258aa|down_8|LS483348.1_1331568_1332342_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|243aa|down_9|LS483348.1_1332439_1333168_-	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase
GCA_900475065.1_42545_C02	LS483348	Streptococcus lutetiensis strain NCTC8738 genome assembly, chromosome: 1	3	1322469-1323691	2,3,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,csa3,csm6,WYL,csn2,cas2,cas1,cas9,DinG	Type II-B,Type II-C,Type II-A	GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	36,36,36	1	1	1323099-1323128	LS483348.1_1525749-1525720	II-A,II-B:II-A:II-A	18,18,11	18	TypeII-B,TypeII-C,TypeII-A	cas3,DEDDh,csa3,csm6,WYL,csn2,cas2,cas1,cas9,DinG	NA,NA	NA|101aa|up_9|LS483348.1_1311363_1311666_-	TIGR03652, FeS_repair_RIC, iron-sulfur cluster repair di-iron protein	NA|250aa|up_8|LS483348.1_1311831_1312581_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|75aa|up_7|LS483348.1_1312819_1313044_-	cd09159, PLDc_ybhO_like_2, Catalytic domain, repeat 2, of Escherichia coli cardiolipin synthase ybhO and similar proteins	NA|454aa|up_6|LS483348.1_1313218_1314580_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|481aa|up_5|LS483348.1_1314688_1316131_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|275aa|up_4|LS483348.1_1316230_1317055_-	PRK11898, PRK11898, prephenate dehydratase; Provisional	NA|159aa|up_3|LS483348.1_1317051_1317528_-	PRK00131, aroK, shikimate kinase; Reviewed	NA|428aa|up_2|LS483348.1_1317520_1318804_-	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|612aa|up_1|LS483348.1_1318937_1320773_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|139aa|up_0|LS483348.1_1321950_1322367_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|109aa|down_0|LS483348.1_1323888_1324215_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|62aa|down_1|LS483348.1_1324228_1324414_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	csn2|221aa|down_2|LS483348.1_1324509_1325172_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|110aa|down_3|LS483348.1_1325161_1325491_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_4|LS483348.1_1325502_1326369_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1374aa|down_5|LS483348.1_1326368_1330490_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|220aa|down_6|LS483348.1_1330919_1331579_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|258aa|down_7|LS483348.1_1331568_1332342_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|243aa|down_8|LS483348.1_1332439_1333168_-	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|377aa|down_9|LS483348.1_1333173_1334304_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase
GCA_900475065.1_42545_C02	LS483348	Streptococcus lutetiensis strain NCTC8738 genome assembly, chromosome: 1	4	1767225-1767457	3,4	CRISPRCasFinder,CRT	no		cas3,DEDDh,csa3,csm6,WYL,csn2,cas2,cas1,cas9,DinG	Orphan	AGGTTTTAGAGCCATTCAAAATAGCATGGTAGTAAATT,AGGTTTTAGAGCCATTCAAAA	38,21	0	0	NA	NA	NA:NA	3,3	3	Orphan	cas3,DEDDh,csa3,csm6,WYL,csn2,cas2,cas1,cas9,DinG	NA,NA|62aa|down_1|LS483348.1_1768479_1768665_+,NA|66aa|down_3|LS483348.1_1769542_1769740_+,NA|65aa|down_4|LS483348.1_1769830_1770025_+,NA|53aa|down_5|LS483348.1_1770036_1770195_+,NA|35aa|down_6|LS483348.1_1770191_1770296_+	NA|318aa|up_9|LS483348.1_1754918_1755872_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|323aa|up_8|LS483348.1_1756256_1757225_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|168aa|up_7|LS483348.1_1758086_1758590_+	pfam02517, Abi, CAAX protease self-immunity	NA|260aa|up_6|LS483348.1_1758709_1759489_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|273aa|up_5|LS483348.1_1760124_1760943_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|238aa|up_4|LS483348.1_1760953_1761667_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|309aa|up_3|LS483348.1_1761709_1762636_-	cd01137, PsaA, Metal binding protein PsaA	NA|424aa|up_2|LS483348.1_1762892_1764164_-	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family	NA|541aa|up_1|LS483348.1_1764185_1765808_-	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|390aa|up_0|LS483348.1_1766000_1767170_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|280aa|down_0|LS483348.1_1767470_1768310_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|62aa|down_1|LS483348.1_1768479_1768665_+	NA	NA|216aa|down_2|LS483348.1_1768714_1769362_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|66aa|down_3|LS483348.1_1769542_1769740_+	NA	NA|65aa|down_4|LS483348.1_1769830_1770025_+	NA	NA|53aa|down_5|LS483348.1_1770036_1770195_+	NA	NA|35aa|down_6|LS483348.1_1770191_1770296_+	NA	NA|92aa|down_7|LS483348.1_1770300_1770576_+	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins	NA|298aa|down_8|LS483348.1_1770572_1771466_+	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|549aa|down_9|LS483348.1_1771478_1773125_+	TIGR01613, putative_primase, phage/plasmid primase, P4 family, C-terminal domain
