The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483351	Streptococcus pyogenes strain NCTC8195 genome assembly, chromosome: 1	1898595	36589	48952	1898595		Synechococcus_phage(28.57%)	8	NA	NA
SQF43542.1|36589_40363_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.0	1.6e-40
SQF43545.1|40523_41978_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.3	6.3e-54
SQF43547.1|42005_43028_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.4	6.9e-63
SQF43549.1|43195_43750_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
SQF43551.1|43933_45481_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	9.8e-45
SQF43553.1|45539_46664_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQF43556.1|46826_48182_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQF43558.1|48460_48952_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	1.9e-18
>prophage 2
LS483351	Streptococcus pyogenes strain NCTC8195 genome assembly, chromosome: 1	1898595	178808	222270	1898595	capsid,tRNA,tail,protease,integrase,holin,portal,terminase	Streptococcus_phage(55.56%)	66	177694:177711	222267:222284
177694:177711	attL	GCTGAGGGCTATTTTTAT	NA	NA	NA	NA
SQF43764.1|178808_179951_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.9	2.9e-86
SQF43767.1|180168_180480_+	Helper of Tim protein 13	NA	NA	NA	NA	NA
SQF43768.1|180483_181023_+	biotin transporter	NA	NA	NA	NA	NA
SQF43769.1|181162_181942_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
SQF43771.1|181941_182457_+|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
SQF43773.1|183070_184291_-	S-layer protein	NA	NA	NA	NA	NA
SQF43774.1|184678_185821_-|integrase	integrase	integrase	A0A141E0H2	Streptococcus_phage	56.7	1.4e-117
SQF43776.1|185947_186481_-	putative lipoprotein	NA	A0A1S5SAH9	Streptococcus_phage	55.3	1.3e-20
SQF43779.1|186492_186873_-	phage protein	NA	Q938N7	Temperate_phage	64.0	1.4e-40
SQF43781.1|186882_187233_-	phage transcriptional regulator, Cro/CI family	NA	A0A1S5SFC6	Streptococcus_phage	60.3	4.8e-32
SQF43783.1|187543_187759_+	phage protein	NA	M1Q1B4	Streptococcus_phage	78.6	2.2e-24
SQF43785.1|187832_187967_+	Uncharacterised protein	NA	A3F616	Streptococcus_phage	100.0	2.1e-17
SQF43787.1|187963_188707_+	phage associated antirepressor	NA	A3F617	Streptococcus_phage	86.1	1.5e-120
SQF43790.1|188782_188995_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43791.1|189028_189220_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43793.1|189251_189407_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43795.1|189408_189951_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43797.1|190081_190342_+	Uncharacterised protein	NA	A0A1S5SAL2	Streptococcus_phage	73.3	1.1e-28
SQF43799.1|190360_190549_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43801.1|190535_191882_+	DNA polymerase III delta prime subunit	NA	A0A1P8VVQ6	Streptococcus_phage	84.7	7.8e-208
SQF43803.1|191868_192471_+	Uncharacterised protein	NA	A0A1P8VVT8	Streptococcus_phage	93.0	1.7e-106
SQF43805.1|192448_193195_+	DNA replication protein, putative	NA	A0A1P8VVR3	Streptococcus_phage	96.8	2.2e-135
SQF43807.1|193195_194020_+	phage DNA replication protein	NA	A0A1P8VVV9	Streptococcus_phage	79.6	1.4e-127
SQF43810.1|194019_194247_+	phage protein	NA	C5J991	Streptococcus_phage	50.7	7.1e-13
SQF43812.1|194260_194437_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43814.1|194433_194718_+	phage protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	93.6	5.9e-41
SQF43816.1|194714_195359_+	modification methylase	NA	A0A140HLV8	Bacillus_phage	64.6	1.3e-64
SQF43818.1|195346_195502_+	DNA methylase	NA	A0A1S5SFL7	Streptococcus_phage	60.5	1.6e-08
SQF43820.1|195707_195947_+	DNA methylase	NA	A0A1X9I6Y5	Streptococcus_phage	61.5	8.0e-15
SQF43822.1|195936_196410_+	gp29	NA	A3F631	Streptococcus_phage	98.7	8.0e-91
SQF43825.1|196528_196861_+	gp24	NA	A0A1S5SCX1	Streptococcus_phage	57.4	1.2e-32
SQF43826.1|196853_197183_+	cro/CI family prophage LambdaSa2	NA	A0A1P8VVV5	Streptococcus_phage	45.5	3.2e-22
SQF43827.1|197179_197353_+	Uncharacterised protein	NA	A0A1J0MGB9	Staphylococcus_phage	46.9	1.1e-05
SQF43829.1|197355_197604_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43832.1|197600_197780_+	Uncharacterised protein	NA	A0A060QN65	Streptococcus_phage	55.3	1.1e-05
SQF43834.1|197788_197938_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43837.1|197906_198107_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43839.1|198130_198550_+	RNA polymerase ECF family sigma factor	NA	A0A1S5SF97	Streptococcus_phage	42.0	1.1e-19
SQF43841.1|198641_199208_+|integrase	prophage LambdaSa2, site-specific recombinase phage integrase family protein	integrase	A0A1S5SCL7	Streptococcus_phage	61.0	1.2e-61
SQF43843.1|199379_199673_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43845.1|199669_199999_+	HNH endonuclease	NA	A0A1S7FZ53	Listeria_phage	49.5	6.7e-20
SQF43848.1|200120_200468_+	Uncharacterised protein	NA	E2ELI1	Clostridium_phage	34.5	4.0e-07
SQF43850.1|200448_202107_+|terminase	putative phage terminase, large subunit	terminase	E2ELI2	Clostridium_phage	44.4	4.0e-129
SQF43852.1|202305_203541_+|portal	HK97 family phage portal protein	portal	A0A1S7FYX7	Listeria_phage	37.6	3.6e-74
SQF43854.1|203544_204261_+|protease	Prophage Clp protease-like protein	protease	D2XR17	Bacillus_phage	42.9	1.4e-38
SQF43857.1|204296_205490_+|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A0A1B1P752	Bacillus_phage	30.8	1.7e-41
SQF43859.1|205504_205792_+	HeH/LEM domain	NA	NA	NA	NA	NA
SQF43861.1|205811_206105_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43863.1|206106_206484_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43865.1|206455_206827_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43867.1|206835_207258_+	Uncharacterised protein	NA	A0A1S7FZ20	Listeria_phage	48.5	3.1e-25
SQF43870.1|207268_207856_+	Uncharacterised protein	NA	A0A1B1P778	Bacillus_phage	36.4	1.1e-28
SQF43872.1|207876_208248_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43874.1|208283_208442_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF43878.1|208515_211917_+|tail	tail protein	tail	J7KDT4	Streptococcus_phage	58.8	9.5e-93
SQF43879.1|211916_212624_+	phage protein	NA	A0A1B1P761	Bacillus_phage	35.2	1.3e-28
SQF43880.1|212620_214669_+	Phage endopeptidase	NA	Q938K1	Temperate_phage	44.0	2.2e-121
SQF43881.1|214668_215685_+	phage hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	87.0	3.3e-158
SQF43882.1|215700_217716_+	Phage infection protein	NA	Q938J9	Temperate_phage	75.0	3.4e-183
SQF43884.1|217727_218159_+	phage protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
SQF43886.1|218161_218779_+	phage protein	NA	Q938J7	Temperate_phage	90.2	2.8e-80
SQF43887.1|218788_219244_+|holin	holin	holin	A0A0M4R3G6	Streptococcus_phage	80.8	8.9e-63
SQF43889.1|219245_219359_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	91.4	2.6e-08
SQF43891.1|219355_220561_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	84.5	3.1e-208
SQF43892.1|220676_221849_-	DNA/RNA non-specific endonuclease family protein	NA	A7J2B8	Streptococcus_phage	49.5	1.4e-75
SQF43894.1|222087_222270_+	phage protein	NA	A3F673	Streptococcus_phage	80.0	1.1e-19
222267:222284	attR	ATAAAAATAGCCCTCAGC	NA	NA	NA	NA
>prophage 3
LS483351	Streptococcus pyogenes strain NCTC8195 genome assembly, chromosome: 1	1898595	364457	420569	1898595	transposase,tRNA,bacteriocin,protease	Streptococcus_phage(33.33%)	60	NA	NA
SQF44181.1|364457_365048_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	55.7	2.6e-54
SQF44184.1|365542_365818_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF44186.1|366066_366702_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	1.2e-65
SQF44188.1|366719_367595_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
SQF44190.1|367613_367853_+	Tpl protein	NA	NA	NA	NA	NA
SQF44194.1|368256_368580_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF44196.1|368584_369448_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
SQF44197.1|369474_369867_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF44199.1|369913_370543_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQF44202.1|370840_371197_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	66.7	4.8e-40
SQF44205.1|371270_372098_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.5	8.4e-128
SQF44207.1|372331_373513_+	L-lactate oxidase	NA	NA	NA	NA	NA
SQF44209.1|373778_378722_+	LPXTG-motif cell wall anchor domain protein	NA	NA	NA	NA	NA
SQF44211.1|379494_380202_+	permease	NA	NA	NA	NA	NA
SQF44213.1|380444_382442_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.2	6.0e-87
SQF44216.1|382935_383949_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.0	1.6e-96
SQF44218.1|383952_384441_+	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
SQF44220.1|384407_386588_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.2	7.3e-171
SQF44222.1|386790_387543_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQF44225.1|388000_388351_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF44227.1|388765_389017_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF44229.1|389110_389383_-	phage protein	NA	NA	NA	NA	NA
SQF44231.1|389379_389655_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF44233.1|389994_390231_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQF44236.1|390223_390922_+	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	26.0	5.4e-11
SQF44238.1|390997_391957_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQF44240.1|392289_393627_+	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQF44243.1|393800_395183_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.0	6.5e-32
SQF44246.1|395216_395771_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQF44248.1|395770_396022_+	membrane protein	NA	NA	NA	NA	NA
SQF44251.1|396041_396737_+	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQF44253.1|396887_397229_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF44255.1|397327_397975_-	metalloregulator ScaR	NA	NA	NA	NA	NA
SQF44259.1|398120_399053_+	manganese-binding protein	NA	NA	NA	NA	NA
SQF44262.1|399116_399842_+	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.4e-17
SQF44264.1|399842_400697_+	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQF44266.1|400843_401650_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
SQF44268.1|401866_404272_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.4	2.2e-88
SQF44271.1|404341_404695_-	integral membrane protein	NA	NA	NA	NA	NA
SQF44273.1|404917_406051_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF44276.1|406055_406160_+	exfoliative toxin	NA	NA	NA	NA	NA
SQF44278.1|406264_406690_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQF44280.1|406795_407485_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQF44283.1|407806_408535_+	uridylate kinase	NA	NA	NA	NA	NA
SQF44286.1|408563_409121_+	ribosome recycling factor	NA	NA	NA	NA	NA
SQF44288.1|409229_410087_+	s1 RNA binding domain	NA	NA	NA	NA	NA
SQF44290.1|410159_410669_+	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQF44292.1|410665_410881_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF44293.1|411036_412218_+	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	39.6	2.1e-15
SQF44294.1|412532_414305_+	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQF44295.1|414463_415516_+	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQF44297.1|415561_416137_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQF44299.1|416295_416793_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQF44301.1|416773_417181_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF44304.1|417300_418197_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF44306.1|418217_418694_+	phosphohydrolase	NA	NA	NA	NA	NA
SQF44308.1|419000_419255_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF44310.1|419652_419787_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF44312.1|419899_420082_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF44315.1|420419_420569_-|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
>prophage 4
LS483351	Streptococcus pyogenes strain NCTC8195 genome assembly, chromosome: 1	1898595	512333	549943	1898595	holin,terminase,tail	Streptococcus_phage(65.91%)	58	NA	NA
SQF44571.1|512333_513182_-	glycosyl hydrolases 25 family protein	NA	A0A223LJI5	Bacillus_phage	31.3	1.9e-18
SQF44573.1|513506_514010_+	membrane protein	NA	NA	NA	NA	NA
SQF44575.1|513993_514377_+	Surface-layer 125 kDa protein	NA	NA	NA	NA	NA
SQF44577.1|514422_514719_-	glutathione peroxidase	NA	NA	NA	NA	NA
SQF44580.1|514727_516185_-	site-specific recombinase/resolvase	NA	Q38184	Lactococcus_phage	50.7	1.5e-132
SQF44589.1|516320_516839_-	HIRAN domain protein	NA	E8ZDN5	Streptococcus_phage	45.3	7.8e-31
SQF44592.1|516850_517606_-	Cro/CI family transcriptional regulator	NA	A0A1S5S8S8	Streptococcus_phage	61.2	3.3e-78
SQF44594.1|517807_518020_+	helix-turn-helix family protein	NA	A0A1X9I583	Streptococcus_phage	56.7	1.1e-10
SQF44596.1|518060_518192_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF44598.1|518188_518371_-	phage membrane protein	NA	NA	NA	NA	NA
SQF44600.1|518603_518789_+	phage protein	NA	Q938N3	Temperate_phage	91.8	1.1e-22
SQF44603.1|519277_519667_+	DNA replication protein dnaD	NA	Q938N2	Temperate_phage	77.5	8.7e-51
SQF44605.1|519647_519881_+	phage protein	NA	Q938N1	Temperate_phage	94.8	6.1e-36
SQF44607.1|519877_520018_+	phage protein	NA	NA	NA	NA	NA
SQF44609.1|520026_520233_+	phage protein	NA	NA	NA	NA	NA
SQF44611.1|520288_520618_+	phage protein	NA	J7KGX3	Streptococcus_phage	84.4	7.1e-46
SQF44613.1|520620_521547_+	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
SQF44615.1|521543_521744_+	phage protein	NA	NA	NA	NA	NA
SQF44617.1|521736_522534_+	phage protein	NA	J7KGZ1	Streptococcus_phage	83.8	1.3e-130
SQF44620.1|522654_522747_+	phage protein	NA	A0A1S5SCN4	Streptococcus_phage	70.0	3.7e-05
SQF44622.1|522897_523293_+	phage protein	NA	A8ATL9	Listeria_phage	51.1	2.6e-18
SQF44624.1|523289_524636_+	PcfJ	NA	A8ATM0	Listeria_phage	49.4	1.0e-122
SQF44626.1|524646_524979_+	phage protein	NA	M1NS23	Streptococcus_phage	67.0	8.8e-36
SQF44628.1|524975_525488_+	lactococcus phage M3 family protein	NA	M1PFM2	Streptococcus_phage	86.5	5.8e-79
SQF44630.1|525523_525838_+	phage protein	NA	A1EAD7	Streptococcus_phage	71.1	4.4e-29
SQF44632.1|525839_526055_+	phage protein	NA	NA	NA	NA	NA
SQF44634.1|526051_526303_+	phage protein	NA	M1PF60	Streptococcus_phage	57.8	4.8e-18
SQF44636.1|526378_526798_+	phage protein	NA	A0A1X9I5B5	Streptococcus_phage	79.9	6.7e-57
SQF44638.1|526905_527250_+	HNH endonuclease family protein	NA	M1Q0W7	Streptococcus_phage	69.4	3.2e-41
SQF44640.1|527398_527755_+	phage protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
SQF44643.1|527751_529020_+	structural phage protein	NA	M1PFL4	Streptococcus_phage	75.6	2.2e-188
SQF44645.1|529012_530506_+	phage protein	NA	M1Q184	Streptococcus_phage	54.6	2.6e-87
SQF44647.1|530511_530736_+	phage protein	NA	NA	NA	NA	NA
SQF44649.1|530812_530965_+	phage protein	NA	NA	NA	NA	NA
SQF44651.1|530957_531224_+	secreted phage protein	NA	Q938K9	Temperate_phage	95.5	6.4e-37
SQF44653.1|531543_532959_+|terminase	phage terminase	terminase	A0A0B5A091	Streptococcus_phage	74.2	2.9e-213
SQF44655.1|533037_533502_+	phage protein	NA	A0A141E167	Streptococcus_phage	58.4	5.7e-41
SQF44657.1|533505_534399_+	phage structural protein	NA	A0A126GGI3	Streptococcus_phage	77.7	1.7e-129
SQF44659.1|534400_534529_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF44661.1|534549_534972_+	phage Gp19/Gp15/Gp42 family protein	NA	A0A0B5A2F6	Streptococcus_phage	68.6	9.7e-48
SQF44663.1|534931_535270_+	phage protein	NA	A0A0B5A086	Streptococcus_phage	68.8	1.3e-42
SQF44665.1|535262_535499_+	phage protein	NA	A0A1P8BMT2	Lactococcus_phage	67.9	6.7e-22
SQF44667.1|535499_535835_+	phage protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	9.8e-35
SQF44670.1|535850_536432_+|tail	Major tail protein	tail	M1NS84	Streptococcus_phage	62.9	9.9e-59
SQF44672.1|536441_536705_+	phage protein	NA	A0A0B5A2F3	Streptococcus_phage	55.8	1.0e-18
SQF44674.1|536719_537091_+	phage protein	NA	M1PL84	Streptococcus_phage	59.2	1.2e-33
SQF44675.1|537090_539448_+	phage protein	NA	M1NRG5	Streptococcus_phage	50.6	6.5e-141
SQF44676.1|539444_540140_+	phage protein	NA	A0A1B1P761	Bacillus_phage	29.6	7.6e-05
SQF44678.1|540136_542080_+	phage endopeptidase	NA	M1PKG3	Streptococcus_phage	50.0	6.2e-97
SQF44680.1|542076_543192_+	phage associated hyaluronidase	NA	A7J2A8	Streptococcus_phage	71.7	1.7e-123
SQF44682.1|543206_544988_+	gp58-like family protein	NA	Q938J9	Temperate_phage	42.8	2.0e-73
SQF44685.1|544996_545425_+	phage protein	NA	Q938J8	Temperate_phage	92.1	2.8e-66
SQF44687.1|545427_546060_+	phage protein	NA	Q938J7	Temperate_phage	49.5	3.7e-43
SQF44689.1|546069_546525_+|holin	holin	holin	A0A0M4R3G6	Streptococcus_phage	81.5	5.2e-63
SQF44691.1|546526_546649_+	phage membrane protein	NA	NA	NA	NA	NA
SQF44693.1|546636_547845_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	85.6	2.6e-210
SQF44695.1|547923_548151_-	glutathione peroxidase	NA	NA	NA	NA	NA
SQF44697.1|548143_549943_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	36.8	2.9e-109
>prophage 5
LS483351	Streptococcus pyogenes strain NCTC8195 genome assembly, chromosome: 1	1898595	587418	679923	1898595	capsid,tRNA,tail,protease,integrase,holin,portal,bacteriocin,terminase	Streptococcus_phage(56.45%)	107	592089:592107	632534:632552
SQF44750.1|587418_588765_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.1e-55
SQF44752.1|589179_590070_+	P-loop ATPase protein family protein	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
SQF44753.1|590066_591044_+	transporter	NA	A1IMD5	Streptococcus_phage	74.2	2.1e-138
SQF44754.1|591040_591952_+	sporulation Regulator WhiA C terminal domain-containing protein	NA	Q7AWZ3	Streptococcus_phage	64.7	1.3e-105
592089:592107	attL	CATGTACAACTATACTCGT	NA	NA	NA	NA
SQF44755.1|592128_593544_-|integrase	integrase	integrase	A5GZ62	Lactococcus_phage	47.2	1.4e-109
SQF44756.1|593666_593972_-	phage membrane protein	NA	NA	NA	NA	NA
SQF44757.1|593981_594746_-	phage repressor protein	NA	E8ZDN4	Streptococcus_phage	64.5	2.0e-83
SQF44758.1|595105_595264_+	phage membrane protein	NA	J7KH24	Streptococcus_phage	88.5	7.1e-20
SQF44760.1|595362_596004_-	phage protein	NA	J7KJ31	Streptococcus_phage	100.0	1.5e-116
SQF44762.1|596055_596244_+	putative cro protein	NA	A0A0B5A7F0	Streptococcus_phage	63.3	2.6e-13
SQF44764.1|596292_597054_+	phage antirepressor protein	NA	A0A0C5AEJ9	Bacteriophage	61.9	1.6e-85
SQF44766.1|597066_597198_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF44768.1|597194_597377_-	phage membrane protein	NA	NA	NA	NA	NA
SQF44770.1|597463_597601_+	phage protein	NA	NA	NA	NA	NA
SQF44772.1|597602_597788_+	phage protein	NA	Q938N3	Temperate_phage	83.6	2.0e-21
SQF44774.1|598270_598657_+	phage DNA replication protein	NA	Q938N2	Temperate_phage	55.0	2.8e-25
SQF44776.1|598637_598871_+	phage protein	NA	Q938N1	Temperate_phage	94.8	6.1e-36
SQF44778.1|598867_599008_+	phage protein	NA	NA	NA	NA	NA
SQF44780.1|599016_599223_+	phage protein	NA	NA	NA	NA	NA
SQF44783.1|599278_599608_+	phage protein	NA	J7KGX3	Streptococcus_phage	83.5	2.1e-45
SQF44785.1|599610_600537_+	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	69.0	1.9e-91
SQF44787.1|600533_600734_+	phage protein	NA	NA	NA	NA	NA
SQF44789.1|600726_601524_+	phage protein	NA	J7KGZ1	Streptococcus_phage	83.8	6.6e-130
SQF44791.1|601700_602042_+	phage protein	NA	M1NS23	Streptococcus_phage	38.7	3.1e-12
SQF44793.1|602038_602551_+	phage protein	NA	Q708P9	Streptococcus_phage	73.2	8.4e-62
SQF44795.1|602522_602735_+	phage protein	NA	A3F626	Streptococcus_phage	86.5	1.1e-10
SQF44797.1|602728_603013_+	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	100.0	7.0e-50
SQF44799.1|603009_603279_+	phage protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
SQF44801.1|603288_603702_+	phage protein	NA	Q938M1	Temperate_phage	65.2	6.4e-36
SQF44803.1|603698_603983_+	phage protein	NA	A3F628	Streptococcus_phage	79.8	4.6e-33
SQF44805.1|603986_604472_+	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.1	2.0e-92
SQF44807.1|604473_605112_+	phage protein	NA	L0P368	Streptococcus_phage	65.2	1.3e-80
SQF44809.1|605108_605207_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF44811.1|605476_605914_+	phage protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	99.3	1.4e-76
SQF44813.1|606816_607746_+	phage protein	NA	A0A126HAU2	Lactococcus_phage	71.8	4.9e-100
SQF44815.1|607872_608250_-	phage protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
SQF44817.1|608301_608487_-	phage protein	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
SQF44819.1|608585_608726_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF44821.1|608722_609061_+	Phage endonuclease	NA	J7KH36	Streptococcus_phage	90.7	3.0e-55
SQF44823.1|609231_609699_+|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
SQF44825.1|609701_609932_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF44827.1|609941_611690_+|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	96.2	0.0e+00
SQF44829.1|611686_611857_+	phage protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
SQF44831.1|611849_612074_+	phage protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
SQF44833.1|612107_613328_+|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.9	6.9e-187
SQF44836.1|613305_613971_+|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	78.1	3.5e-92
SQF44837.1|613995_615183_+|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	74.7	1.3e-158
SQF44838.1|615327_615630_+	phage protein	NA	J7KC36	Streptococcus_phage	88.8	1.3e-41
SQF44839.1|615626_615974_+	phage protein	NA	J7KJ42	Streptococcus_phage	88.2	2.9e-50
SQF44840.1|615970_616348_+	phage protein	NA	J7KDM3	Streptococcus_phage	72.8	1.8e-45
SQF44842.1|616344_616770_+	phage protein	NA	J7KBZ9	Streptococcus_phage	84.4	7.2e-67
SQF44843.1|616785_617394_+|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	71.9	6.7e-74
SQF44844.1|617446_617773_+	phage protein	NA	J7KK85	Streptococcus_phage	75.0	8.3e-39
SQF44845.1|617982_621906_+|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	48.5	1.9e-238
SQF44846.1|621905_622613_+	phage protein	NA	Q938K2	Temperate_phage	71.9	6.8e-94
SQF44847.1|622609_624754_+	Phage endopeptidase	NA	Q938K1	Temperate_phage	94.7	0.0e+00
SQF44848.1|624750_625761_+	phage hyaluronidase	NA	Q938K0	Temperate_phage	75.8	7.8e-136
SQF44849.1|625773_627660_+	gp58-like family protein	NA	Q938J9	Temperate_phage	84.7	3.1e-218
SQF44850.1|627671_628103_+	phage protein	NA	Q938J8	Temperate_phage	89.5	1.3e-63
SQF44852.1|628105_628723_+	phage protein	NA	Q938J7	Temperate_phage	89.3	5.0e-77
SQF44853.1|628732_629008_+|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQF44854.1|629004_629232_+	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	5.8e-31
SQF44855.1|629347_630553_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	83.3	1.6e-204
SQF44856.1|630620_631328_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
SQF44857.1|631438_632197_-	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQF44859.1|632508_633927_+	dipeptidase	NA	NA	NA	NA	NA
632534:632552	attR	CATGTACAACTATACTCGT	NA	NA	NA	NA
SQF44860.1|634078_635626_+	high-affinity zinc uptake system protein	NA	NA	NA	NA	NA
SQF44861.1|635775_636498_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF44862.1|636517_637717_+	tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA	NA
SQF44863.1|637813_638074_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQF44865.1|638188_639130_-	DHH family protein	NA	NA	NA	NA	NA
SQF44866.1|639523_639973_+	flavodoxin	NA	NA	NA	NA	NA
SQF44867.1|640147_640432_+	chorismate mutase	NA	NA	NA	NA	NA
SQF44868.1|640424_641687_+	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	50.5	3.2e-94
SQF44869.1|641801_642149_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQF44871.1|643164_643734_+	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA	NA
SQF44872.1|643734_645687_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	46.2	1.5e-143
SQF44875.1|646054_647779_+	septation ring formation regulator	NA	NA	NA	NA	NA
SQF44877.1|647910_648369_-	hypothetical cytosolic protein	NA	W6LLD2	Streptococcus_phage	39.1	2.3e-18
SQF44879.1|648595_649903_+	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
SQF44882.1|650672_650834_+|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
SQF44884.1|651055_652006_+	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQF44886.1|652002_653061_+|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
SQF44889.1|653080_654439_+|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
SQF44892.1|654413_655085_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF44895.1|655081_655765_+	streptolysin S biosynthesis protein SagF	NA	NA	NA	NA	NA
SQF44898.1|655787_656711_+	ABC transporter family protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	31.4	6.7e-33
SQF44899.1|656719_657847_+	ABC transporter	NA	NA	NA	NA	NA
SQF44900.1|657843_658962_+	ABC transporter	NA	NA	NA	NA	NA
SQF44901.1|659533_662266_+	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
SQF44903.1|663237_665196_+	NAD-dependent DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	34.9	7.6e-103
SQF44905.1|665209_666232_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	27.9	3.6e-19
SQF44907.1|666622_666820_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
SQF44909.1|666854_667571_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
SQF44912.1|667588_668083_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
SQF44914.1|668082_668619_+	ATP synthase delta chain	NA	NA	NA	NA	NA
SQF44918.1|668634_670143_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
SQF44920.1|670158_671034_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
SQF44923.1|671195_672602_+	ATP synthase F0F1 subunit beta	NA	NA	NA	NA	NA
SQF44925.1|672614_673031_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
SQF44928.1|673296_673554_+	membrane protein	NA	NA	NA	NA	NA
SQF44931.1|673618_674890_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF44934.1|674893_675082_+	epuA protein	NA	NA	NA	NA	NA
SQF44938.1|675144_675696_+	DNA-entry nuclease	NA	NA	NA	NA	NA
SQF44940.1|675682_675982_+	DNA-entry nuclease	NA	NA	NA	NA	NA
SQF44943.1|676264_677308_+|tRNA	phenylalanyl-tRNA synthetase alpha subunit	tRNA	A0A2K9L3A8	Tupanvirus	34.3	3.5e-30
SQF44945.1|677517_679923_+|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
>prophage 6
LS483351	Streptococcus pyogenes strain NCTC8195 genome assembly, chromosome: 1	1898595	715332	725935	1898595		Streptococcus_phage(57.14%)	10	NA	NA
SQF45014.1|715332_717543_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.2	7.7e-269
SQF45015.1|717650_718814_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQF45017.1|718810_719497_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF45020.1|719590_720757_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF45021.1|720817_721159_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
SQF45022.1|721379_722732_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.0	4.5e-30
SQF45023.1|722819_723764_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF45024.1|723797_724088_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF45027.1|724117_724558_-	membrane protein	NA	NA	NA	NA	NA
SQF45030.1|724792_725935_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.0	4.1e-24
>prophage 7
LS483351	Streptococcus pyogenes strain NCTC8195 genome assembly, chromosome: 1	1898595	752901	787784	1898595	head,transposase,tRNA,protease	Bacillus_phage(30.77%)	34	NA	NA
SQF45089.1|752901_753633_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQF45091.1|753632_754625_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	1.4e-28
SQF45094.1|754802_755861_+	regulatory protein	NA	NA	NA	NA	NA
SQF45096.1|755873_756797_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQF45098.1|757052_757766_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	31.7	5.5e-19
SQF45100.1|757762_758674_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQF45102.1|758670_760617_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQF45104.1|760715_761309_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	2.7e-11
SQF45106.1|761460_762168_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	6.5e-12
SQF45108.1|762224_762443_-|transposase	degenerate transposase	transposase	A0A1B1P773	Bacillus_phage	55.9	2.7e-09
SQF45110.1|763124_764150_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQF45112.1|764653_764830_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF45114.1|765057_765438_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF45116.1|765437_766286_+	degV family protein	NA	NA	NA	NA	NA
SQF45118.1|766410_767619_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	6.9e-38
SQF45120.1|767615_769493_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.1	1.3e-62
SQF45123.1|770384_770795_+	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF45125.1|770875_772888_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQF45127.1|773108_773759_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF45129.1|773761_774430_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF45131.1|774438_775671_+	two component system histidine kinase	NA	NA	NA	NA	NA
SQF45134.1|775964_776843_+	mevalonate kinase	NA	NA	NA	NA	NA
SQF45135.1|776824_777769_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF45137.1|777761_778775_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF45139.1|778761_779751_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF45142.1|779980_781258_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF45144.1|781244_782420_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF45147.1|782628_783468_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	52.9	2.4e-82
SQF45149.1|783547_784045_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQF45152.1|784064_784235_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF45154.1|784364_785594_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
SQF45156.1|785603_786203_+	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQF45159.1|786350_787094_+	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQF45161.1|787151_787784_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A248SJW6	Salicola_phage	39.4	3.2e-34
>prophage 8
LS483351	Streptococcus pyogenes strain NCTC8195 genome assembly, chromosome: 1	1898595	1059296	1144173	1898595	transposase,tail,head,holin,integrase,portal,terminase	Streptococcus_phage(39.06%)	108	1060332:1060391	1106153:1106248
SQF45635.1|1059296_1059911_-	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
1060332:1060391	attL	ACTCCCACCGGCTCCATCAATGCTTACCGTAAGTAATCATAACTTACTAAAACCTTGTTA	NA	NA	NA	NA
SQF45637.1|1060501_1060690_-	paratox	NA	A3F673	Streptococcus_phage	83.1	1.3e-20
SQF45639.1|1060927_1061728_+	streptodornase	NA	NA	NA	NA	NA
SQF45641.1|1061998_1062124_+	phage membrane protein	NA	NA	NA	NA	NA
SQF45643.1|1062503_1063709_-	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	84.5	2.7e-207
SQF45645.1|1063705_1063816_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	94.4	3.0e-09
SQF45647.1|1063824_1064052_-	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQF45649.1|1064048_1064324_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQF45652.1|1064333_1064951_-	phage protein	NA	Q938J7	Temperate_phage	89.3	1.4e-79
SQF45654.1|1064953_1065115_-	phage protein	NA	NA	NA	NA	NA
SQF45655.1|1065128_1067039_-	phage infection protein	NA	Q938J9	Temperate_phage	71.3	6.0e-121
SQF45658.1|1067051_1068059_-	phage hyaluronidase	NA	A7J2A8	Streptococcus_phage	71.7	1.4e-137
SQF45660.1|1068055_1070107_-	phage protein	NA	A3F656	Streptococcus_phage	84.3	0.0e+00
SQF45662.1|1070103_1070883_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	55.5	1.9e-68
SQF45664.1|1070914_1074181_-	tape measure domain protein	NA	U6E979	Streptococcus_phage	30.4	1.6e-04
SQF45666.1|1074195_1074525_-	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	41.5	2.0e-11
SQF45667.1|1074566_1074926_-	phage protein	NA	D7RWD6	Brochothrix_phage	44.5	4.3e-20
SQF45668.1|1074978_1075581_-|tail	phage major tail protein	tail	D7RWD5	Brochothrix_phage	52.0	1.3e-40
SQF45669.1|1075636_1076026_-	phage protein	NA	Q38611	Lactococcus_phage	68.2	3.5e-44
SQF45671.1|1076022_1076379_-	phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	5.7e-17
SQF45672.1|1076368_1076677_-	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
SQF45673.1|1076673_1077027_-	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
SQF45674.1|1077040_1077283_-	phage protein	NA	NA	NA	NA	NA
SQF45676.1|1077292_1078369_-|head	phage head protein	head	A0A2H4J022	uncultured_Caudovirales_phage	56.0	5.5e-103
SQF45677.1|1078368_1078749_-	structural protein	NA	A0A0K2CNR0	Brevibacillus_phage	37.9	5.2e-08
SQF45679.1|1078758_1079292_-	phage protein	NA	A0A141E0S7	Streptococcus_phage	83.9	1.4e-14
SQF45681.1|1079403_1080147_-	antirepressor	NA	M1PKL6	Streptococcus_phage	56.9	5.3e-73
SQF45683.1|1080148_1080397_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF45685.1|1080511_1080691_-	Uncharacterised protein	NA	M1NRK8	Streptococcus_phage	79.7	2.6e-18
SQF45687.1|1080786_1081056_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	84.1	2.3e-34
SQF45689.1|1081115_1081295_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF45691.1|1081285_1082911_-|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	U6E9F1	Streptococcus_phage	43.8	1.1e-46
SQF45693.1|1082891_1084394_-|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
SQF45695.1|1084405_1085713_-|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.0	8.5e-183
SQF45698.1|1085690_1086122_-|terminase	terminase	terminase	A0A1S5SCD2	Streptococcus_phage	69.9	2.2e-47
SQF45700.1|1086220_1086406_+	phage protein	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
SQF45702.1|1086457_1086835_+	phage protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
SQF45704.1|1086973_1087435_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF45707.1|1087453_1088368_-	phage protein	NA	NA	NA	NA	NA
SQF45709.1|1089289_1089727_-	phage protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	100.0	3.6e-77
SQF45711.1|1089995_1090631_-	phage protein	NA	L0P368	Streptococcus_phage	67.9	5.5e-87
SQF45713.1|1090630_1091032_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF45715.1|1091222_1091705_-	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
SQF45717.1|1091708_1092068_-	phage protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	88.5	5.4e-39
SQF45718.1|1092193_1092463_-	phage protein	NA	Q938M2	Temperate_phage	87.6	2.5e-41
SQF45720.1|1092459_1092744_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	98.9	2.0e-49
SQF45722.1|1092737_1092974_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	83.1	2.9e-33
SQF45724.1|1092970_1093327_-	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	95.8	5.1e-58
SQF45726.1|1093310_1093661_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	89.4	2.6e-46
SQF45728.1|1093614_1094484_-	phage protein	NA	A0A1P8BME8	Lactococcus_phage	64.9	3.7e-102
SQF45730.1|1094750_1096304_-	bacteriophage resistance protein	NA	A0A1P8BM51	Lactococcus_phage	70.4	4.3e-210
SQF45732.1|1096321_1096804_-	phage protein	NA	A0A1P8BM40	Lactococcus_phage	70.7	9.7e-60
SQF45734.1|1096808_1098173_-	DEAD/DEAH box helicase	NA	A0A1P8BMH7	Lactococcus_phage	72.3	3.8e-194
SQF45736.1|1098247_1098931_-	phage protein	NA	J7KC09	Streptococcus_phage	99.1	9.4e-125
SQF45738.1|1098927_1099212_-	phage protein	NA	NA	NA	NA	NA
SQF45740.1|1099208_1099403_-	phage protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
SQF45742.1|1099402_1099732_-	phage protein	NA	A1EAC2	Streptococcus_phage	41.6	2.7e-13
SQF45744.1|1099715_1099829_-	Uncharacterised protein	NA	A0A097PAT6	Streptococcus_pyogenes_phage	75.0	7.6e-08
SQF45746.1|1099812_1099950_-	phage protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	97.8	4.9e-17
SQF45748.1|1099946_1100243_-	phage protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	86.7	4.6e-44
SQF45750.1|1100320_1100506_-	phage protein	NA	J7KH19	Streptococcus_phage	70.5	1.2e-18
SQF45752.1|1100649_1100868_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF45754.1|1100853_1100985_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF45756.1|1101040_1101250_+	phage protein	NA	NA	NA	NA	NA
SQF45758.1|1101208_1101454_-	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
SQF45760.1|1101508_1102018_+	phage protein	NA	NA	NA	NA	NA
SQF45762.1|1102125_1102353_-	phage protein	NA	A0A141E1R7	Streptococcus_phage	57.3	2.9e-14
SQF45763.1|1102426_1102909_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF45765.1|1102905_1103052_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF45766.1|1103212_1103950_+	phage transcriptional repressor	NA	A0A1S5S8T5	Streptococcus_phage	63.9	2.7e-77
SQF45767.1|1103962_1104772_+	phage protein	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
SQF45768.1|1105021_1106110_+|integrase	integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	99.4	4.2e-204
SQF45769.1|1106472_1107093_+	phage protein	NA	NA	NA	NA	NA
1106153:1106248	attR	ACTCCCACCGGCTCCATCAATGCTTACCGTAAGTAATCATAACTTACTAAAACCTTGTTACATCAAGGTTTTTTCTTTTTGTCTTGTTCATGAGTT	NA	NA	NA	NA
SQF45770.1|1107349_1109614_-	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
SQF45771.1|1109648_1111142_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
SQF45772.1|1111256_1112276_-	LacI family transcription regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
SQF45773.1|1112519_1113767_+	maltose/maltodextrin-binding protein	NA	NA	NA	NA	NA
SQF45775.1|1114040_1115402_+	maltose/maltodextrin ABC transport system permease	NA	NA	NA	NA	NA
SQF45776.1|1115401_1116238_+	maltose transport system permease	NA	NA	NA	NA	NA
SQF45777.1|1116611_1117199_+|transposase	truncated transposase	transposase	Q9MBM9	Staphylococcus_prophage	39.1	3.5e-27
SQF45778.1|1117712_1118696_-	alpha/beta fold family hydrolase	NA	NA	NA	NA	NA
SQF45779.1|1118726_1119977_-	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA	NA
SQF45780.1|1119969_1120209_-	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
SQF45782.1|1120226_1121483_-	Protein dltB	NA	NA	NA	NA	NA
SQF45783.1|1121479_1123018_-	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	28.2	5.0e-41
SQF45784.1|1123029_1123173_-	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA	NA
SQF45785.1|1123436_1125428_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
SQF45786.1|1125620_1127795_+	glutamine-binding protein/glutamine transpor tsystem permease protein	NA	NA	NA	NA	NA
SQF45787.1|1127794_1128535_+	glutamine transport ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	42.1	1.5e-35
SQF45788.1|1128682_1128805_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF45790.1|1128830_1130210_-	PTS system cellobiose-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQF45791.1|1130400_1130835_-	Domain of uncharacterised function (DUF3284)	NA	NA	NA	NA	NA
SQF45792.1|1130831_1131167_-	PTS system cellobiose-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQF45793.1|1131169_1131481_-	PTS system cellobiose-specific component IIB	NA	NA	NA	NA	NA
SQF45794.1|1131503_1133498_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQF45795.1|1133603_1134698_-	outer surface protein	NA	NA	NA	NA	NA
SQF45796.1|1134706_1136107_-	beta-glucosidase	NA	NA	NA	NA	NA
SQF45798.1|1136331_1137027_+	nicotinamide mononucleotide transporter	NA	NA	NA	NA	NA
SQF45799.1|1137031_1137190_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF45800.1|1137258_1138572_-	GTPase ObgE	NA	NA	NA	NA	NA
SQF45801.1|1138628_1138757_-	membrane protein	NA	NA	NA	NA	NA
SQF45802.1|1138998_1139514_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF45803.1|1139534_1140341_+|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	50.0	1.1e-63
SQF45804.1|1140640_1141513_-	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQF45806.1|1141736_1143047_+	membrane protein	NA	NA	NA	NA	NA
SQF45807.1|1143124_1143418_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF45808.1|1143450_1143804_+	DNA-binding protein	NA	A0A0C5AEB1	Paenibacillus_phage	30.8	1.6e-06
SQF45809.1|1143849_1144173_+|transposase	transposase	transposase	A0A1P8CWQ3	Bacillus_phage	46.2	3.3e-19
>prophage 9
LS483351	Streptococcus pyogenes strain NCTC8195 genome assembly, chromosome: 1	1898595	1402679	1471788	1898595	tRNA,tail,holin,integrase,portal,terminase	Streptococcus_phage(78.18%)	79	1431679:1431695	1471834:1471850
SQF46363.1|1402679_1404719_-|tRNA	glycyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
SQF46365.1|1405095_1406013_-|tRNA	glycyl-tRNA synthetase alpha subunit	tRNA	NA	NA	NA	NA
SQF46368.1|1406383_1406917_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF46370.1|1407048_1407888_-	2,5-diketo-D-gluconic acid reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.3	2.5e-50
SQF46372.1|1408009_1409158_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
SQF46374.1|1409275_1410907_-	Sodium-dependent phosphate transporter	NA	A0A1B1ITU5	uncultured_Mediterranean_phage	38.8	2.7e-05
SQF46376.1|1411108_1411831_+	lipoprotein	NA	NA	NA	NA	NA
SQF46377.1|1411959_1412802_-	EDD, DegV family domain-containing protein	NA	A0A1X9I5J4	Streptococcus_phage	61.9	1.3e-91
SQF46379.1|1413094_1413652_+	TetR family transcriptional regulator	NA	A0A1X9I6A2	Streptococcus_phage	60.3	3.2e-14
SQF46381.1|1413687_1414512_-	haloacid dehalogenase	NA	NA	NA	NA	NA
SQF46383.1|1414513_1415131_-	HAD superfamily hydrolase	NA	NA	NA	NA	NA
SQF46385.1|1415149_1415239_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF46388.1|1415327_1416305_-	tagatose 1,6-diphosphate aldolase	NA	NA	NA	NA	NA
SQF46390.1|1416386_1416650_-	tagatose-6-phosphate kinase	NA	NA	NA	NA	NA
SQF46391.1|1416814_1417330_-	galactose-6-phosphate isomerase subunit	NA	NA	NA	NA	NA
SQF46393.1|1417344_1417770_-	galactose-6-phosphate isomerase subunit	NA	A0A222YX14	Synechococcus_phage	28.6	4.9e-07
SQF46395.1|1418026_1419478_-	PTS system galactitol-specific family transporter subunit IIC	NA	NA	NA	NA	NA
SQF46397.1|1419503_1419809_-	PTS system galactose-specific transporter subunit IIB	NA	NA	NA	NA	NA
SQF46399.1|1419801_1420275_-	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein	NA	NA	NA	NA	NA
SQF46401.1|1420511_1421282_+	lactose phosphotransferase system repressor	NA	A0A077SK06	Escherichia_phage	27.8	6.4e-21
SQF46403.1|1421485_1421689_-	copper chaperone	NA	NA	NA	NA	NA
SQF46405.1|1421702_1423934_-	copper-exporting ATPase	NA	A0A218MNH6	uncultured_virus	37.5	2.9e-114
SQF46407.1|1423933_1424368_-	copAB ATPase metal-fist type repressor	NA	NA	NA	NA	NA
SQF46409.1|1424539_1425529_+	esterase / lipase	NA	NA	NA	NA	NA
SQF46411.1|1425659_1426010_-	truncated ribosome-binding factor A	NA	NA	NA	NA	NA
SQF46413.1|1426215_1429077_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.2	4.5e-19
SQF46415.1|1429096_1429399_-	ribosomal protein in infB 5'region	NA	NA	NA	NA	NA
SQF46417.1|1429391_1429688_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQF46419.1|1429703_1430849_-	transcription elongation factor	NA	NA	NA	NA	NA
SQF46421.1|1431035_1431572_-	ribosome maturation factor rimP	NA	NA	NA	NA	NA
1431679:1431695	attL	AAGGAGAGGAGGGGATT	NA	NA	NA	NA
SQF46423.1|1431816_1431996_-	paratox	NA	A3F673	Streptococcus_phage	79.7	5.2e-19
SQF46425.1|1432062_1432857_-	streptococcal phage DNAse	NA	A7J2B8	Streptococcus_phage	35.6	8.9e-26
SQF46427.1|1433101_1434316_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8VVM5	Streptococcus_phage	60.5	9.7e-165
SQF46429.1|1434312_1434426_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	82.9	2.2e-07
SQF46431.1|1434427_1434883_-|holin	holin	holin	A0A0M4R3G6	Streptococcus_phage	81.5	3.0e-63
SQF46433.1|1434893_1435526_-	phage protein	NA	Q938J7	Temperate_phage	51.9	4.3e-47
SQF46436.1|1435528_1435960_-	phage protein	NA	Q938J8	Temperate_phage	89.5	1.3e-63
SQF46438.1|1435971_1437990_-	Phage infection protein	NA	Q938J9	Temperate_phage	69.5	2.7e-172
SQF46440.1|1438002_1439124_-	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	71.2	1.6e-126
SQF46442.1|1439123_1441163_-	phage protein	NA	A7J2A7	Streptococcus_phage	91.0	0.0e+00
SQF46444.1|1441172_1442015_-	phage protein	NA	A7J2A6	Streptococcus_phage	98.6	5.5e-159
SQF46446.1|1442239_1446052_-|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	98.9	5.2e-241
SQF46448.1|1446066_1446300_-	phage protein	NA	A7J2A4	Streptococcus_phage	100.0	4.4e-34
SQF46450.1|1446374_1446830_-	phage protein	NA	A7J2A3	Streptococcus_phage	100.0	8.3e-77
SQF46452.1|1446883_1447483_-|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	100.0	2.2e-93
SQF46454.1|1447494_1447854_-	phage protein	NA	A7J2A1	Streptococcus_phage	100.0	2.1e-59
SQF46456.1|1447960_1448200_-	phage protein	NA	A7J2A0	Streptococcus_phage	94.9	1.7e-33
SQF46458.1|1448196_1448475_-	phage protein	NA	A7J299	Streptococcus_phage	98.9	4.2e-47
SQF46460.1|1448485_1448842_-	phage protein	NA	A7J298	Streptococcus_phage	98.3	2.5e-57
SQF46462.1|1448853_1449741_-	phage protein	NA	A7J297	Streptococcus_phage	100.0	2.1e-161
SQF46464.1|1449753_1450323_-	phage protein	NA	A7J296	Streptococcus_phage	97.4	1.0e-79
SQF46466.1|1450483_1450750_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	85.2	1.1e-33
SQF46468.1|1450752_1450869_-	phage membrane protein	NA	A7J294	Streptococcus_phage	97.4	3.0e-07
SQF46470.1|1450971_1452417_-	phage protein	NA	A7J293	Streptococcus_phage	96.7	4.5e-270
SQF46473.1|1452376_1453909_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	98.2	4.3e-287
SQF46474.1|1453923_1455201_-|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	98.1	3.5e-242
SQF46476.1|1455190_1455643_-|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	93.3	1.0e-71
SQF46478.1|1455738_1456152_-	phage protein	NA	A7J289	Streptococcus_phage	64.2	5.8e-45
SQF46480.1|1456284_1456551_-	phage protein	NA	A7J287	Streptococcus_phage	60.0	7.3e-17
SQF46482.1|1456553_1456715_-	phage protein	NA	A7J285	Streptococcus_phage	94.3	1.2e-22
SQF46484.1|1456715_1458038_-	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	98.0	4.6e-253
SQF46486.1|1458034_1458310_-	phage protein	NA	A7J283	Streptococcus_phage	96.7	8.6e-45
SQF46487.1|1458676_1461061_-	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	97.6	8.8e-287
SQF46488.1|1461065_1462997_-	phage DNA polymerase	NA	A7J280	Streptococcus_phage	87.8	0.0e+00
SQF46489.1|1463039_1463603_-	phage protein	NA	D2J040	Enterococcus_phage	57.9	7.4e-51
SQF46490.1|1463616_1464774_-	phage protein	NA	A7J278	Streptococcus_phage	99.7	1.7e-219
SQF46491.1|1464773_1465073_-	phage protein	NA	A7J277	Streptococcus_phage	92.9	1.0e-38
SQF46492.1|1465160_1465364_-	phage protein	NA	A7J276	Streptococcus_phage	100.0	9.4e-33
SQF46493.1|1465360_1465513_-	phage protein	NA	A7J275	Streptococcus_phage	100.0	4.4e-19
SQF46494.1|1465509_1465893_-	phage protein	NA	A7J274	Streptococcus_phage	100.0	7.2e-66
SQF46496.1|1465889_1466096_-	phage protein	NA	NA	NA	NA	NA
SQF46497.1|1466088_1466259_-	phage protein	NA	A7J273	Streptococcus_phage	89.3	2.0e-20
SQF46498.1|1466255_1466531_-	phage protein	NA	A7J272	Streptococcus_phage	95.6	1.7e-45
SQF46500.1|1466589_1466799_-	phage protein	NA	M1Q1B4	Streptococcus_phage	53.6	7.7e-14
SQF46501.1|1467090_1467438_+	Cro/CI family phage transcriptional regulator	NA	A0A126GGQ7	Streptococcus_phage	73.5	1.5e-41
SQF46504.1|1467441_1467828_+	peptidase	NA	Q7Y4M1	Streptococcus_phage	58.4	1.3e-38
SQF46506.1|1467952_1469674_+	prophage Lp2 protein 4	NA	NA	NA	NA	NA
SQF46508.1|1469730_1470588_+	Site-specific DNA methylase	NA	A0A2H4UUI2	Bodo_saltans_virus	29.3	9.9e-15
SQF46510.1|1470708_1471788_+|integrase	integrase	integrase	A7J266	Streptococcus_phage	93.3	7.5e-177
1471834:1471850	attR	AAGGAGAGGAGGGGATT	NA	NA	NA	NA
