assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900475125.1_42042_H01	LS483354	Streptococcus equi subsp. zooepidemicus strain NCTC11606 genome assembly, chromosome: 1	2	620462-621089	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	Type I-C,Type I-U, Type I-U?	GTCTCGCCCCATACGGGCGAGTGGATTGAAAT,GTCTCGCCCCATACGGGCGAGTGGATTGAAAT,GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	8,9,9	9	TypeI-C,TypeI-U,TypeI-U?	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA|110aa|up_9|LS483354.1_610049_610379_+,NA|198aa|up_7|LS483354.1_611109_611703_+,NA	NA|110aa|up_9|LS483354.1_610049_610379_+	NA	NA|124aa|up_8|LS483354.1_610737_611109_+	pfam14021, TNT, Tuberculosis necrotizing toxin	NA|198aa|up_7|LS483354.1_611109_611703_+	NA	cas3|818aa|up_6|LS483354.1_612168_614622_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|248aa|up_5|LS483354.1_614838_615582_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|628aa|up_4|LS483354.1_615581_617465_+	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|283aa|up_3|LS483354.1_617465_618314_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|224aa|up_2|LS483354.1_618315_618987_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|LS483354.1_618983_620009_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|LS483354.1_620019_620313_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|232aa|down_0|LS483354.1_621883_622579_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|237aa|down_1|LS483354.1_623233_623944_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|217aa|down_2|LS483354.1_623957_624608_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|371aa|down_3|LS483354.1_624625_625738_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_4|LS483354.1_626006_626747_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|573aa|down_5|LS483354.1_626743_628462_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|363aa|down_6|LS483354.1_628501_629590_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|235aa|down_7|LS483354.1_629604_630309_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|163aa|down_8|LS483354.1_630567_631056_+	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|158aa|down_9|LS483354.1_631566_632040_-	COG1438, ArgR, Arginine repressor [Transcription]
GCA_900475125.1_42042_H01	LS483354	Streptococcus equi subsp. zooepidemicus strain NCTC11606 genome assembly, chromosome: 1	3	896641-896750	3	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	Orphan	CTGACTTGATGACAGCTTATACTAAAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA|183aa|up_4|LS483354.1_890394_890943_-,NA|96aa|up_3|LS483354.1_890935_891223_-,NA|152aa|up_2|LS483354.1_891222_891678_-,NA|126aa|up_1|LS483354.1_891929_892307_-,NA|714aa|down_5|LS483354.1_900914_903056_+,NA|41aa|down_6|LS483354.1_903056_903179_+	NA|655aa|up_9|LS483354.1_883264_885229_+	pfam05738, Cna_B, Cna protein B-type domain	NA|479aa|up_8|LS483354.1_885243_886680_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|270aa|up_7|LS483354.1_886760_887570_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|393aa|up_6|LS483354.1_887884_889063_+	pfam09028, Mac-1, Mac 1	NA|361aa|up_5|LS483354.1_889142_890225_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|183aa|up_4|LS483354.1_890394_890943_-	NA	NA|96aa|up_3|LS483354.1_890935_891223_-	NA	NA|152aa|up_2|LS483354.1_891222_891678_-	NA	NA|126aa|up_1|LS483354.1_891929_892307_-	NA	NA|1238aa|up_0|LS483354.1_892788_896502_+	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|180aa|down_0|LS483354.1_896790_897330_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|212aa|down_1|LS483354.1_897319_897955_+	pfam13490, zf-HC2, Putative zinc-finger	NA|232aa|down_2|LS483354.1_898082_898778_+	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins	NA|226aa|down_3|LS483354.1_898791_899469_+	pfam16316, DUF4956, Domain of unknown function (DUF4956)	NA|478aa|down_4|LS483354.1_899474_900908_+	pfam08757, CotH, CotH kinase protein	NA|714aa|down_5|LS483354.1_900914_903056_+	NA	NA|41aa|down_6|LS483354.1_903056_903179_+	NA	NA|465aa|down_7|LS483354.1_903202_904597_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|1098aa|down_8|LS483354.1_904735_908029_+	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|1215aa|down_9|LS483354.1_908018_911663_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type
GCA_900475125.1_42042_H01	LS483354	Streptococcus equi subsp. zooepidemicus strain NCTC11606 genome assembly, chromosome: 1	4	918060-918131	4	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	Orphan	CCTTTTTAACGGCGAGCTAAAAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA|41aa|up_9|LS483354.1_903056_903179_+,NA	NA|41aa|up_9|LS483354.1_903056_903179_+	NA	NA|465aa|up_8|LS483354.1_903202_904597_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|1098aa|up_7|LS483354.1_904735_908029_+	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|1215aa|up_6|LS483354.1_908018_911663_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|372aa|up_5|LS483354.1_911928_913044_+	PRK07324, PRK07324, transaminase; Validated	NA|271aa|up_4|LS483354.1_913111_913924_+	cd13620, PBP2_GltS, Substrate binding domain of glutamate or arginine ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily	NA|59aa|up_3|LS483354.1_914090_914267_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|125aa|up_2|LS483354.1_914494_914869_-	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|604aa|up_1|LS483354.1_915115_916927_+	PRK05667, dnaG, DNA primase; Validated	NA|370aa|up_0|LS483354.1_916935_918045_+	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated	NA|113aa|down_0|LS483354.1_918396_918735_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|283aa|down_1|LS483354.1_918875_919724_+	pfam04321, RmlD_sub_bind, RmlD substrate binding domain	NA|385aa|down_2|LS483354.1_919848_921003_+	cd04955, GT4-like, glycosyltransferase family 4 proteins	NA|312aa|down_3|LS483354.1_920992_921928_+	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|268aa|down_4|LS483354.1_921927_922731_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|403aa|down_5|LS483354.1_922730_923939_+	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|336aa|down_6|LS483354.1_923959_924967_+	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|582aa|down_7|LS483354.1_924963_926709_+	COG3754, RgpF, Lipopolysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|230aa|down_8|LS483354.1_926738_927428_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|119aa|down_9|LS483354.1_927432_927789_+	pfam10066, DUF2304, Uncharacterized conserved protein (DUF2304)
GCA_900475125.1_42042_H01	LS483354	Streptococcus equi subsp. zooepidemicus strain NCTC11606 genome assembly, chromosome: 1	5	1406197-1407354	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	Type II-A,Type II-C,Type II-B	GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC,GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC,GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	36,36,36	1	1	1406233-1406262	LS483354.1_1910714-1910743	II-A,II-B:II-A,II-B:II-A,II-B	17,17,16	17	TypeII-A,TypeII-C,TypeII-B	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA,NA|407aa|down_7|LS483354.1_1415843_1417064_-,NA|141aa|down_8|LS483354.1_1417133_1417556_-	NA|129aa|up_9|LS483354.1_1391570_1391957_-	pfam09148, DUF1934, Domain of unknown function (DUF1934)	NA|434aa|up_8|LS483354.1_1392037_1393339_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|270aa|up_7|LS483354.1_1393549_1394359_+	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional	NA|405aa|up_6|LS483354.1_1394358_1395573_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|412aa|up_5|LS483354.1_1395572_1396808_+	pfam02388, FemAB, FemAB family	NA|253aa|up_4|LS483354.1_1397120_1397879_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|399aa|up_3|LS483354.1_1398144_1399341_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|1049aa|up_2|LS483354.1_1400289_1403436_+	pfam03272, Mucin_bdg, Putative mucin or carbohydrate-binding module	NA|363aa|up_1|LS483354.1_1403725_1404814_-	pfam13800, Sigma_reg_N, Sigma factor regulator N-terminal	NA|157aa|up_0|LS483354.1_1404797_1405268_-	TIGR02950, RNA_polymerase_ECF-type_sigma_factor, RNA polymerase sigma factor, SigM family	csn2|225aa|down_0|LS483354.1_1407629_1408304_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|LS483354.1_1408296_1408641_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|LS483354.1_1408637_1409507_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1349aa|down_3|LS483354.1_1409506_1413553_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|108aa|down_4|LS483354.1_1414066_1414390_-	pfam15597, Imm59, Immunity protein 59	NA|183aa|down_5|LS483354.1_1414390_1414939_-	pfam14021, TNT, Tuberculosis necrotizing toxin	NA|249aa|down_6|LS483354.1_1415082_1415829_-	pfam08929, DUF1911, Domain of unknown function (DUF1911)	NA|407aa|down_7|LS483354.1_1415843_1417064_-	NA	NA|141aa|down_8|LS483354.1_1417133_1417556_-	NA	NA|135aa|down_9|LS483354.1_1417745_1418150_-	pfam15599, Imm63, Immunity protein 63
GCA_900475125.1_42042_H01	LS483354	Streptococcus equi subsp. zooepidemicus strain NCTC11606 genome assembly, chromosome: 1	6	1709346-1709510	6	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	Orphan	AATGTCAATCCACGCTCCCATGAAGGGCGAGAC	33	0	0	NA	NA	I-C	2	2	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA,NA|95aa|down_9|LS483354.1_1718842_1719127_-	NA|95aa|up_9|LS483354.1_1699523_1699808_-	PRK02302, PRK02302, hypothetical protein; Provisional	NA|149aa|up_8|LS483354.1_1699808_1700255_-	COG3679, COG3679, Regulatory protein involved in competence development and sporulation [Replication, recombination and repair;    Signal transduction mechanisms]	NA|197aa|up_7|LS483354.1_1700359_1700950_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|210aa|up_6|LS483354.1_1701181_1701811_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|544aa|up_5|LS483354.1_1701960_1703592_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|482aa|up_4|LS483354.1_1703677_1705123_+	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|260aa|up_3|LS483354.1_1705382_1706162_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|313aa|up_2|LS483354.1_1706186_1707125_+	cd01138, FeuA, Periplasmic binding protein FeuA	NA|351aa|up_1|LS483354.1_1707108_1708161_+	pfam01032, FecCD, FecCD transport family	NA|333aa|up_0|LS483354.1_1708157_1709156_+	pfam01032, FecCD, FecCD transport family	NA|218aa|down_0|LS483354.1_1709892_1710546_-	pfam08820, DUF1803, Domain of unknown function (DUF1803)	NA|312aa|down_1|LS483354.1_1710612_1711548_-	PRK05427, PRK05427, putative manganese-dependent inorganic pyrophosphatase; Provisional	NA|264aa|down_2|LS483354.1_1712032_1712824_-	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme	NA|445aa|down_3|LS483354.1_1712900_1714235_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|186aa|down_4|LS483354.1_1714362_1714920_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|238aa|down_5|LS483354.1_1714929_1715643_-	cd05150, APH, Aminoglycoside 3'-phosphotransferase	NA|308aa|down_6|LS483354.1_1715727_1716651_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|216aa|down_7|LS483354.1_1716841_1717489_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|193aa|down_8|LS483354.1_1717478_1718057_-	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|95aa|down_9|LS483354.1_1718842_1719127_-	NA
