The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483359	Streptococcus pyogenes strain NCTC12068 genome assembly, chromosome: 1	1751353	36587	49010	1751353		Synechococcus_phage(28.57%)	8	NA	NA
SQF58592.1|36587_40361_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.7	6.7e-39
SQF58594.1|40584_42039_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	1.1e-53
SQF58596.1|42066_43089_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.4	3.1e-63
SQF58597.1|43256_43811_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	5.2e-25
SQF58600.1|43994_45542_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	4.4e-45
SQF58602.1|45598_46723_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQF58603.1|46885_48241_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQF58604.1|48398_49010_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.1	1.4e-18
>prophage 2
LS483359	Streptococcus pyogenes strain NCTC12068 genome assembly, chromosome: 1	1751353	338152	344185	1751353		Streptococcus_phage(100.0%)	9	NA	NA
SQF59016.1|338152_338788_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.0e-65
SQF59017.1|338805_339681_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	48.3	4.8e-73
SQF59018.1|339699_339939_+	Tpl protein	NA	NA	NA	NA	NA
SQF59019.1|340342_340666_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF59020.1|340670_341534_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	3.8e-115
SQF59021.1|341560_341953_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF59022.1|341999_342629_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQF59024.1|342927_343284_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.8e-39
SQF59026.1|343357_344185_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.5	2.9e-128
>prophage 3
LS483359	Streptococcus pyogenes strain NCTC12068 genome assembly, chromosome: 1	1751353	397284	407595	1751353	transposase,protease,bacteriocin	Streptococcus_phage(66.67%)	16	NA	NA
SQF59173.1|397284_397782_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQF59174.1|397762_398170_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF59175.1|398289_399186_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF59176.1|399206_399683_+	phosphohydrolase	NA	NA	NA	NA	NA
SQF59177.1|400180_400375_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF59179.1|400777_401008_+	truncated SilB	NA	NA	NA	NA	NA
SQF59181.1|401503_402214_-|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
SQF59183.1|402318_402555_-|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
SQF59185.1|402852_403077_+	blpU	NA	NA	NA	NA	NA
SQF59187.1|403054_403231_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF59189.1|403316_403544_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF59190.1|404444_404675_+|bacteriocin	bacteriocin class II with double-glycine leader peptide	bacteriocin	NA	NA	NA	NA
SQF59191.1|404723_405041_+	role in replication	NA	NA	NA	NA	NA
SQF59194.1|405818_406244_+	Transposase	NA	A0A1P8CWQ3	Bacillus_phage	46.3	3.0e-28
SQF59196.1|406457_407069_+|transposase	truncated transposase	transposase	A0A1X9I5T2	Streptococcus_phage	96.6	4.6e-99
SQF59198.1|407019_407595_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	87.8	1.3e-98
>prophage 4
LS483359	Streptococcus pyogenes strain NCTC12068 genome assembly, chromosome: 1	1751353	466536	473180	1751353	portal	Streptococcus_phage(66.67%)	13	NA	NA
SQF59310.1|466536_466746_-	vanUG2	NA	A0A2K5B263	Erysipelothrix_phage	63.1	3.4e-17
SQF59313.1|466735_467209_-	Chromosome segregation ATPase	NA	NA	NA	NA	NA
SQF59315.1|467329_468394_-	Chromosome segregation ATPase	NA	NA	NA	NA	NA
SQF59316.1|468384_468609_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF59318.1|468608_469004_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF59320.1|469534_469693_+	prophage LambdaSa04	NA	M1PSF2	Streptococcus_phage	88.5	3.5e-19
SQF59321.1|469747_470050_+	Plasmid stabilization system antitoxin protein	NA	NA	NA	NA	NA
SQF59323.1|470049_470355_+	prophage LambdaSa04, RelE/ParE family protein	NA	NA	NA	NA	NA
SQF59325.1|470373_470646_+	cytoplasmic protein	NA	E4ZFM1	Streptococcus_phage	50.7	4.1e-07
SQF59327.1|470750_471203_+|portal	portal protein	portal	E4ZFM3	Streptococcus_phage	85.6	4.4e-62
SQF59329.1|471268_471577_+	prophage minor structural protein	NA	Q6DMT0	Streptococcus_phage	64.9	5.7e-21
SQF59331.1|471993_472332_+	huntington interacting protein HYPE	NA	NA	NA	NA	NA
SQF59333.1|472355_473180_+	asparagine ligase A	NA	M1PB22	Moumouvirus	33.5	4.3e-23
>prophage 5
LS483359	Streptococcus pyogenes strain NCTC12068 genome assembly, chromosome: 1	1751353	643874	654476	1751353		Streptococcus_phage(57.14%)	9	NA	NA
SQF59564.1|643874_646085_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.9	1.1e-267
SQF59565.1|646192_647356_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQF59566.1|647352_648039_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF59567.1|648131_649298_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF59568.1|649358_649700_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
SQF59569.1|649920_651273_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.2	2.7e-30
SQF59570.1|651360_652629_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF59571.1|652658_653099_-	membrane protein	NA	NA	NA	NA	NA
SQF59572.1|653333_654476_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
>prophage 6
LS483359	Streptococcus pyogenes strain NCTC12068 genome assembly, chromosome: 1	1751353	681413	717762	1751353	transposase,protease,head,tRNA	Bacillus_phage(30.77%)	34	NA	NA
SQF59617.1|681413_682145_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQF59619.1|682144_683137_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
SQF59620.1|683314_684373_+	regulatory protein	NA	NA	NA	NA	NA
SQF59621.1|684385_685309_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQF59622.1|685609_686278_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.7	4.8e-17
SQF59623.1|686274_687186_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQF59625.1|687182_689129_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQF59627.1|689228_689822_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.5e-11
SQF59629.1|689972_690680_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	1.9e-11
SQF59631.1|690736_690955_-|transposase	degenerate transposase	transposase	A0A1B1P773	Bacillus_phage	54.4	1.7e-08
SQF59633.1|691636_692662_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQF59635.1|693163_693340_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF59637.1|693567_693948_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF59639.1|693947_694796_+	degV family protein	NA	NA	NA	NA	NA
SQF59641.1|694920_696129_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	44.6	2.0e-37
SQF59643.1|696125_698003_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.6	1.1e-63
SQF59645.1|698895_699306_+	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF59647.1|699387_701400_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQF59649.1|701619_702270_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF59651.1|702272_702941_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF59653.1|702949_704182_+	two component system histidine kinase	NA	NA	NA	NA	NA
SQF59655.1|704475_705354_+	mevalonate kinase	NA	NA	NA	NA	NA
SQF59657.1|705335_706280_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF59659.1|706272_707286_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF59661.1|707272_708262_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF59663.1|708491_709769_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF59665.1|709755_710931_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF59667.1|711115_711979_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQF59670.1|712058_712556_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQF59672.1|712575_712746_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF59674.1|712875_714105_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
SQF59675.1|714114_714714_+	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQF59677.1|714861_715605_+	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQF59679.1|715662_717762_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.4	3.0e-121
>prophage 7
LS483359	Streptococcus pyogenes strain NCTC12068 genome assembly, chromosome: 1	1751353	1034576	1090364	1751353	transposase,integrase,protease,tRNA	Enterococcus_phage(23.08%)	52	1059843:1059859	1089589:1089605
SQF60243.1|1034576_1035092_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF60244.1|1035112_1035430_+|transposase	putative transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	53.4	1.7e-20
SQF60245.1|1035426_1035888_+|transposase	transposase, IS861	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	46.4	5.1e-34
SQF60246.1|1035936_1036668_-	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQF60248.1|1036782_1037148_+	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQF60249.1|1037267_1038488_-	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQF60250.1|1038861_1040346_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF60251.1|1040450_1040852_-	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQF60252.1|1040936_1041449_-	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	95.9	1.9e-90
SQF60253.1|1041753_1043109_-|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	D0R096	Streptococcus_phage	98.0	8.9e-252
SQF60254.1|1043190_1044642_-	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQF60255.1|1044849_1045341_-	shikimate kinase	NA	NA	NA	NA	NA
SQF60256.1|1045333_1046617_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF60257.1|1046727_1047693_-	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQF60258.1|1047694_1048555_-	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQF60260.1|1048570_1049854_-	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQF60261.1|1049862_1050405_-	acetyltransferase family protein	NA	NA	NA	NA	NA
SQF60262.1|1050954_1051368_-	Mag protein precursor	NA	NA	NA	NA	NA
SQF60263.1|1051609_1052038_-	Beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
SQF60264.1|1052229_1052460_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
SQF60265.1|1052460_1052673_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
SQF60266.1|1052718_1054509_-	glycosyl hydrolase, family 3	NA	NA	NA	NA	NA
SQF60267.1|1054625_1055429_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
SQF60268.1|1055697_1056537_-	D-mannonate oxidoreductase	NA	NA	NA	NA	NA
SQF60269.1|1056551_1057646_-	mannonate dehydratase	NA	NA	NA	NA	NA
SQF60270.1|1057740_1059138_-	uronate isomerase	NA	NA	NA	NA	NA
SQF60271.1|1059167_1059785_-	4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase	NA	NA	NA	NA	NA
1059843:1059859	attL	GACTTGTCAAGAAAAAA	NA	NA	NA	NA
SQF60272.1|1059913_1060585_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF60273.1|1060626_1062417_-	Beta-glucuronidase	NA	B9U1V4	Vaccinia_virus	45.1	2.8e-136
SQF60274.1|1062440_1063469_-	2-dehydro-3-deoxygluconokinase	NA	NA	NA	NA	NA
SQF60275.1|1063623_1065168_-	sugar/sodium symporter	NA	NA	NA	NA	NA
SQF60276.1|1065559_1066819_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF60277.1|1066992_1068189_-	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	4.5e-138
SQF60278.1|1068726_1071105_-	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
SQF60280.1|1071308_1072250_+	biotin-protein ligase	NA	NA	NA	NA	NA
SQF60281.1|1072522_1074193_-	DNA polymerase III subunits gamma and tau	NA	E7DN81	Pneumococcus_phage	41.0	3.0e-47
SQF60282.1|1074192_1074690_-	GAF domain-containing protein	NA	NA	NA	NA	NA
SQF60283.1|1074834_1075644_+	membrane protein	NA	NA	NA	NA	NA
SQF60284.1|1075696_1075960_-	membrane protein	NA	NA	NA	NA	NA
SQF60285.1|1076039_1076666_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	3.7e-35
SQF60286.1|1076764_1077850_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.6e-33
SQF60288.1|1077960_1079235_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQF60291.1|1079329_1080757_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQF60293.1|1080923_1082657_-	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQF60295.1|1082661_1082925_-	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQF60297.1|1083317_1083536_+	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	1.8e-13
SQF60299.1|1083555_1085715_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.2	3.0e-262
SQF60301.1|1086047_1087007_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.5	5.7e-128
SQF60303.1|1086981_1088295_+	chloride channel protein	NA	NA	NA	NA	NA
SQF60304.1|1088433_1088667_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF60306.1|1088746_1089577_+|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	39.8	2.0e-44
SQF60308.1|1089668_1090364_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
1089589:1089605	attR	TTTTTTCTTGACAAGTC	NA	NA	NA	NA
