The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	2830002	709022	716842	2830002		Hokovirus(16.67%)	10	NA	NA
SQF73007.1|709022_710078_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
SQF73008.1|710077_710764_-	Response regulator SaeR	NA	NA	NA	NA	NA
SQF73009.1|710738_711212_-	DoxX family protein	NA	NA	NA	NA	NA
SQF73010.1|711553_711994_-	lipoprotein	NA	NA	NA	NA	NA
SQF73011.1|712273_712858_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF73012.1|712956_713670_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
SQF73013.1|713673_714093_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
SQF73014.1|714094_714763_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
SQF73015.1|715113_715707_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
SQF73016.1|715690_716842_+	Para-aminobenzoate synthetase component I	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	2830002	728814	743545	2830002		uncultured_Caudovirales_phage(50.0%)	12	NA	NA
SQF73025.1|728814_729873_+	histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
SQF73026.1|730223_730766_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
SQF73027.1|731389_732307_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
SQF73028.1|732576_734082_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
SQF73029.1|734422_734923_-	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
SQF73030.1|734942_735809_-	Integral membrane domain protein	NA	NA	NA	NA	NA
SQF73031.1|736609_737008_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
SQF73032.1|736970_739076_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
SQF73033.1|739193_740165_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
SQF73034.1|740830_741844_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.0	2.2e-138
SQF73035.1|741830_742787_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
SQF73036.1|742783_743545_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	2830002	987950	996423	2830002		Synechococcus_phage(33.33%)	9	NA	NA
SQF73265.1|987950_988433_+	AIR carboxylase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
SQF73266.1|988419_989544_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
SQF73267.1|989547_990252_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
SQF73268.1|990251_990515_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
SQF73269.1|990516_991188_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
SQF73270.1|991180_993370_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
SQF73271.1|993348_994833_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
SQF73272.1|994825_995854_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
SQF73273.1|995856_996423_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 4
LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	2830002	1434934	1522814	2830002	head,integrase,protease,tail,capsid,tRNA,terminase,portal	Staphylococcus_phage(57.14%)	102	1471175:1471199	1517207:1517231
SQF73653.1|1434934_1436227_-|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
SQF73654.1|1436548_1439242_-	dinG family ATP-dependent helicase YoaA	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
SQF73655.1|1439265_1440237_-	Biotin-protein ligase / Biotin operon repressor	NA	NA	NA	NA	NA
SQF73656.1|1440223_1441426_-	poly A polymerase family protein	NA	H7BUW3	unidentified_phage	42.5	3.2e-35
SQF73657.1|1441430_1442573_-	glycosyl transferase	NA	NA	NA	NA	NA
SQF73658.1|1442813_1443131_-	Pyrophosphohydrolase, MazG family	NA	NA	NA	NA	NA
SQF73659.1|1443467_1444166_-	Neutral zinc metallopeptidase family	NA	NA	NA	NA	NA
SQF73660.1|1444219_1444807_-	membrane protein	NA	NA	NA	NA	NA
SQF73661.1|1444796_1445384_-	Putative cytosolic protein	NA	G3MAV7	Bacillus_virus	27.2	2.8e-08
SQF73662.1|1445385_1446630_-	TPR-repeat-containing protein, putative component of Menaquinone-cytochrome C reductase	NA	NA	NA	NA	NA
SQF73663.1|1446636_1447935_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF73664.1|1447944_1449009_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
SQF73665.1|1449034_1450201_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
SQF73666.1|1450586_1450787_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF73667.1|1450995_1451445_-	Nucleoside diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
SQF73668.1|1451536_1452496_-	Farnesyl pyrophosphate synthetase	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
SQF73669.1|1452497_1453223_-	Ubiquinone/menaquinone biosynthesis methyltransferase UbiE	NA	NA	NA	NA	NA
SQF73670.1|1453225_1453798_-	heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 family protein	NA	NA	NA	NA	NA
SQF73671.1|1454228_1454501_-	DNA-binding protein II HBsu	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
SQF73672.1|1454671_1455670_-	Glycerol-3-phosphate dehydrogenase (NAD(P)+)	NA	NA	NA	NA	NA
SQF73673.1|1455686_1456997_-	GTP-binding protein EngA	NA	NA	NA	NA	NA
SQF73674.1|1457218_1458394_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQF73675.1|1459105_1459765_-	Cytidylate kinase	NA	NA	NA	NA	NA
SQF73676.1|1459841_1460810_+	L-asparaginase	NA	NA	NA	NA	NA
SQF73677.1|1460924_1461911_-	thioredoxin reductase	NA	NA	NA	NA	NA
SQF73678.1|1462312_1463773_-	elastin binding protein ebpS	NA	NA	NA	NA	NA
SQF73679.1|1463925_1465305_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
SQF73680.1|1465294_1466248_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF73681.1|1466355_1466604_+	Ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
SQF73682.1|1466709_1467255_-	riboflavin transporter	NA	NA	NA	NA	NA
SQF73683.1|1467851_1468766_-	lipoprotein	NA	NA	NA	NA	NA
SQF73684.1|1468780_1468987_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF73685.1|1468979_1469870_-	lipoprotein	NA	NA	NA	NA	NA
SQF73686.1|1469987_1470905_-	putative lipoprotein with DUF1672	NA	NA	NA	NA	NA
SQF73687.1|1470995_1471343_-	lipoprotein	NA	Q4ZCJ7	Staphylococcus_virus	100.0	3.0e-26
1471175:1471199	attL	TAAACATATCGTCATAATGTGATGG	NA	NA	NA	NA
SQF73688.1|1471587_1472424_-	Uncharacterised protein	NA	D2JLG6	Staphylococcus_phage	100.0	8.4e-152
SQF73689.1|1473039_1474494_-	amidase	NA	Q8SDN4	Staphylococcus_virus	100.0	8.8e-290
SQF73690.1|1474504_1474807_-	SPP1 family prophage L54a	NA	B7T0L0	Staphylococcus_virus	100.0	4.1e-48
SQF73691.1|1474942_1475242_-	hypothetical phage-related protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
SQF73692.1|1475287_1475452_-	phage protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
SQF73693.1|1475444_1475834_-	phage protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
SQF73694.1|1475833_1477300_-|tail	putative phage tail protein	tail	Q8SDN8	Staphylococcus_virus	100.0	3.4e-257
SQF73695.1|1477299_1479210_-	putative minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
SQF73696.1|1479225_1479516_-	putative gp53	NA	Q8SDP0	Staphylococcus_virus	100.0	2.1e-49
SQF73697.1|1479515_1481099_-|tail	prophage endopeptidase tail family protein	tail	Q8SDP1	Staphylococcus_virus	100.0	7.1e-309
SQF73698.1|1481107_1481932_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
SQF73699.1|1481931_1488132_-	TP901 family prophage L54a	NA	Q8SDP3	Staphylococcus_virus	100.0	0.0e+00
SQF73700.1|1488145_1488304_-	putative gp49	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
SQF73701.1|1488345_1488696_-	putative gp48	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
SQF73702.1|1488753_1489209_-|tail	major tail protein	tail	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
SQF73703.1|1489300_1489942_-|tail	major tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
SQF73704.1|1489976_1490372_-	phage protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
SQF73705.1|1490372_1490774_-	putative phiSLT protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
SQF73706.1|1490770_1491103_-	phage protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
SQF73707.1|1491114_1491393_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
SQF73708.1|1491461_1492625_-|capsid	putative phage capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
SQF73709.1|1492636_1493410_-|protease	phage protease	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
SQF73710.1|1493393_1494632_-|portal	portal protein	portal	A0A2I6PF26	Staphylococcus_phage	100.0	1.2e-234
SQF73711.1|1494636_1496328_-|terminase	terminase large subunit	terminase	Q4ZD20	Staphylococcus_virus	99.8	0.0e+00
SQF73712.1|1496317_1496623_-|terminase	Phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
SQF73713.1|1496744_1497059_-	HNH endonuclease family protein	NA	Q8SDQ2	Staphylococcus_virus	100.0	1.9e-56
SQF73714.1|1497215_1497653_-	phage regulatory protein	NA	A0A2K9VBV2	Staphylococcus_phage	99.3	7.9e-77
SQF73715.1|1497665_1499024_-	putative DNA helicase	NA	A0A2K9VBW3	Staphylococcus_phage	100.0	4.3e-262
SQF73716.1|1499013_1499304_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
SQF73717.1|1499644_1502092_-	E family protein	NA	Q4ZCG0	Staphylococcus_virus	100.0	0.0e+00
SQF73718.1|1502143_1502344_-	putative exported phage protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
SQF73719.1|1502411_1502567_-	transcriptional activator rinB-like protein	NA	Q4ZCG2	Staphylococcus_virus	100.0	9.1e-20
SQF73720.1|1502566_1502767_-	phage protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
SQF73721.1|1502741_1502930_-	phage protein	NA	Q4ZCG4	Staphylococcus_virus	100.0	1.6e-26
SQF73722.1|1502966_1503509_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
SQF73723.1|1503513_1503750_-	Phage protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
SQF73724.1|1503742_1504051_-	PV83 orf 27-like protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	8.1e-52
SQF73725.1|1504047_1504395_-	yopX family protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
SQF73726.1|1504391_1504793_-	PVL orf 52-like protein	NA	A0A0N7E0T5	Staphylococcus_phage	100.0	7.0e-72
SQF73727.1|1504795_1505002_-	Phage protein	NA	A0A0N9BAW9	Staphylococcus_phage	100.0	3.0e-34
SQF73728.1|1505015_1505258_-	phage conserved Open Reading Frame 51	NA	Q8SDR2	Staphylococcus_virus	100.0	2.5e-40
SQF73729.1|1505272_1505473_-	phage protein	NA	A0A2I6PF32	Staphylococcus_phage	100.0	1.3e-29
SQF73730.1|1505475_1505733_-	phage protein	NA	Q8SDR4	Staphylococcus_virus	100.0	4.4e-43
SQF73731.1|1505732_1506134_-	putative phi PVL-like protein	NA	A0A2I6PF14	Staphylococcus_phage	100.0	1.2e-68
SQF73732.1|1506133_1506319_-	phage protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
SQF73733.1|1506331_1508293_-	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
SQF73734.1|1508352_1508910_-	phage protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
SQF73735.1|1508935_1510102_-	PD-(D/E)XK nuclease superfamily protein	NA	Q8SDR9	Staphylococcus_virus	100.0	7.0e-221
SQF73736.1|1510098_1510461_-	phage protein	NA	Q4ZCH9	Staphylococcus_virus	100.0	2.9e-56
SQF73737.1|1510475_1510799_-	phage protein	NA	B7T0G4	Staphylococcus_virus	100.0	8.5e-52
SQF73738.1|1510877_1511039_-	phage protein	NA	Q4ZCI2	Staphylococcus_virus	100.0	1.9e-20
SQF73739.1|1511051_1511315_-	DNA-binding protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
SQF73740.1|1511339_1511555_-	phage protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
SQF73741.1|1511609_1511975_+	phage protein	NA	A0A2I6PF07	Staphylococcus_phage	97.5	1.7e-61
SQF73742.1|1511943_1512189_-	phage protein	NA	Q8SDS1	Staphylococcus_virus	100.0	1.1e-40
SQF73743.1|1512204_1512468_-	putative phage transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
SQF73744.1|1512600_1513314_+	CI-like repressor, phage associated	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
SQF73745.1|1513329_1514262_+	DNA polymerase III subunit alpha	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
SQF73746.1|1514267_1514609_+	phage protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
SQF73747.1|1514812_1514995_+	Putative cytosolic protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
SQF73748.1|1515052_1515178_+	ORF136	NA	A0A2I6PF02	Staphylococcus_phage	100.0	5.1e-13
SQF73749.1|1515174_1515789_-	phi PVL ORF 30-like protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
SQF73750.1|1515914_1517120_+|integrase	integrase	integrase	Q8SDS6	Staphylococcus_virus	100.0	5.9e-223
SQF73751.1|1517162_1519190_-	Uncharacterised protein	NA	B5WZK7	Staphylococcus_phage	97.2	3.4e-114
1517207:1517231	attR	TAAACATATCGTCATAATGTGATGG	NA	NA	NA	NA
SQF73752.1|1519182_1520112_-	putative lipoprotein	NA	NA	NA	NA	NA
SQF73753.1|1520356_1522108_-	ResE	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
SQF73754.1|1522088_1522814_-	transcriptional regulator srrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 5
LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	2830002	1577938	1586250	2830002	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
SQF73815.1|1577938_1578724_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
SQF73816.1|1578849_1579740_-	endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
SQF73817.1|1579749_1581096_-	ATP-dependent RNA helicase YqfR	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
SQF73818.1|1581209_1582310_-	NIF3 protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
SQF73819.1|1582312_1582990_-|tRNA	Putative tRNA-m1A22 methylase	tRNA	NA	NA	NA	NA
SQF73820.1|1583120_1584227_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
SQF73821.1|1584450_1586250_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 6
LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	2830002	1655388	1664431	2830002	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
SQF73891.1|1655388_1655907_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
SQF73892.1|1655928_1658202_-	Single-stranded-DNA-specific exonuclease recJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
SQF73893.1|1658404_1660684_-	Protein-export membrane protein secD / Protein-export membrane protein secF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
SQF73894.1|1660958_1661219_-	Preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
SQF73895.1|1661237_1662377_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
SQF73896.1|1662399_1663425_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQF73897.1|1663426_1664431_-	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	2830002	1790204	1907154	2830002	transposase,tRNA,bacteriocin,protease	Staphylococcus_phage(86.76%)	104	NA	NA
SQF74001.1|1790204_1796765_-	LPXTG-motif cell wall anchor domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	3.4e-304
SQF74002.1|1797107_1797419_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
SQF74003.1|1797440_1799858_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
SQF74004.1|1800145_1801327_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
SQF74005.1|1801436_1802390_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
SQF74006.1|1802386_1802950_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
SQF74007.1|1803069_1803471_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
SQF74008.1|1803990_1804215_-	Mobile element protein	NA	Q9MBP7	Staphylococcus_prophage	81.8	4.5e-20
SQF74009.1|1804211_1804703_-	Transposase	NA	A0A146ICT8	Staphylococcus_phage	91.6	2.4e-74
SQF74010.1|1805049_1805877_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
SQF74011.1|1806110_1807112_+	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
SQF74012.1|1807233_1807698_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
SQF74013.1|1807710_1808892_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
SQF74014.1|1808902_1809535_-	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
SQF74015.1|1809541_1810573_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
SQF74016.1|1811065_1812568_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
SQF74017.1|1813090_1813405_+	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
SQF74018.1|1813404_1814697_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	1.9e-227
SQF74019.1|1814714_1815110_+	arsenate reductase, putative	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
SQF74020.1|1815404_1816259_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
SQF74021.1|1816534_1816759_-	putative staphylococcal protein	NA	NA	NA	NA	NA
SQF74022.1|1816957_1817428_+	RNA polymerase sigma factor sigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	3.3e-81
SQF74023.1|1817540_1817984_+	comK family protein	NA	NA	NA	NA	NA
SQF74024.1|1817970_1818414_-	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
SQF74025.1|1818709_1819345_+|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
SQF74026.1|1819784_1820498_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
SQF74027.1|1820757_1821060_+	membrane protein	NA	NA	NA	NA	NA
SQF74028.1|1821315_1821681_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
SQF74029.1|1821677_1822031_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
SQF74030.1|1822586_1823411_+|transposase	transposase	transposase	A0ZS58	Staphylococcus_virus	98.2	1.7e-125
SQF74031.1|1823443_1824052_+|transposase	putative transposase	transposase	A0ZS58	Staphylococcus_virus	95.5	3.8e-109
SQF74032.1|1824114_1824948_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
SQF74033.1|1825159_1826068_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
SQF74034.1|1826192_1827386_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
SQF74035.1|1827756_1829349_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
SQF74036.1|1829484_1829970_-|transposase	IS605/IS200-like transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
SQF74037.1|1830344_1831115_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.3e-142
SQF74038.1|1831095_1831575_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	1.5e-84
SQF74039.1|1831634_1831892_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
SQF74040.1|1831888_1832890_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
SQF74041.1|1832894_1834373_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
SQF74042.1|1834531_1835014_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.5e-79
SQF74043.1|1835325_1835940_+	endonuclease	NA	A0A2H4PQM8	Staphylococcus_phage	87.3	9.5e-36
SQF74044.1|1836020_1837016_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
SQF74045.1|1837091_1837718_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
SQF74046.1|1837758_1838103_+	Uncharacterised protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
SQF74047.1|1838200_1838752_+	Uncharacterised protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
SQF74048.1|1838969_1839611_-	Domain of uncharacterised function (DUF955)	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
SQF74049.1|1839911_1840088_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF74050.1|1840098_1840482_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF74051.1|1841085_1841229_-|transposase	transposase family protein, putative	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
SQF74052.1|1842098_1842476_-	exported protein	NA	NA	NA	NA	NA
SQF74053.1|1842995_1847108_-	[Genomic island nu Sa beta2]	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
SQF74054.1|1847957_1849157_-	type I restriction-modification enzyme, S subunit, EcoA family protein	NA	A0A2H4PQP5	Staphylococcus_phage	100.0	8.5e-230
SQF74055.1|1849149_1850706_-	Type I restriction enzyme EcoprrI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
SQF74056.1|1851068_1851788_-|protease	Serine protease splD	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
SQF74057.1|1851938_1852655_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
SQF74058.1|1852812_1853532_-|protease	Serine protease splD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
SQF74059.1|1853652_1854372_-|protease	Serine protease splC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
SQF74060.1|1854429_1855152_-|protease	Serine protease splB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
SQF74061.1|1855276_1855984_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
SQF74062.1|1856947_1857514_+	probable beta-lactamase	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
SQF74063.1|1857987_1858686_-	lantibiotic ABC transporter protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
SQF74064.1|1858682_1859444_-	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
SQF74065.1|1859440_1860133_-	lantibiotic immunity protein F	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
SQF74066.1|1860155_1861529_-|protease	epidermin leader peptide processing serine protease EpiP	protease	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
SQF74067.1|1861538_1862057_-	lantibiotic modifying enzyme	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
SQF74068.1|1862072_1863317_-	lanthionine synthetase C-like family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
SQF74069.1|1863309_1866303_-|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
SQF74070.1|1866367_1866511_-	lantibiotic gallidermin	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
SQF74071.1|1867632_1868616_-	Leukotoxin LukD	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
SQF74072.1|1868617_1869538_-	Leukocidin S subunit lukE	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	2.3e-174
SQF74073.1|1870435_1870891_+	[Genomic island nu Sa beta2]	NA	Q4ZCB9	Staphylococcus_virus	76.8	1.7e-61
SQF74074.1|1870903_1871692_+	Domain of uncharacterised function DUF1828	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
SQF74075.1|1874148_1874703_-	Putative hydrolase ydeN	NA	NA	NA	NA	NA
SQF74076.1|1875025_1876426_-	Protoporphyrinogen IX oxidase, aerobic	NA	NA	NA	NA	NA
SQF74077.1|1876449_1877373_-	Ferrochelatase, protoheme ferro-lyase	NA	NA	NA	NA	NA
SQF74078.1|1877430_1878468_-	Uroporphyrinogen III decarboxylase	NA	NA	NA	NA	NA
SQF74079.1|1878730_1879234_+	signal transduction protein TRAP	NA	NA	NA	NA	NA
SQF74080.1|1879357_1880581_-	EcsB	NA	NA	NA	NA	NA
SQF74081.1|1880573_1881314_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
SQF74082.1|1881447_1881870_+	adenosine 5'-monophosphoramidase	NA	NA	NA	NA	NA
SQF74083.1|1882011_1882377_+	gas vesicle protein-protein	NA	NA	NA	NA	NA
SQF74084.1|1883109_1883667_+	membrane protein	NA	NA	NA	NA	NA
SQF74085.1|1883871_1884834_+	Foldase protein PrsA precursor	NA	NA	NA	NA	NA
SQF74086.1|1884954_1885896_-	CMP-binding-factor 1	NA	NA	NA	NA	NA
SQF74087.1|1885892_1888829_-	membrane associated protein	NA	NA	NA	NA	NA
SQF74088.1|1888818_1890015_-	DNA repair exonuclease family protein YhaO	NA	NA	NA	NA	NA
SQF74089.1|1890786_1891131_-	putative transcriptional regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
SQF74090.1|1891199_1892324_-	membrane protein	NA	NA	NA	NA	NA
SQF74091.1|1892502_1892967_-	HTH domain protein, binds to mecA promoter region	NA	NA	NA	NA	NA
SQF74092.1|1893322_1893946_-	Two-component response regulator-like protein	NA	NA	NA	NA	NA
SQF74093.1|1893967_1895080_-	Two-component sensor protein	NA	NA	NA	NA	NA
SQF74094.1|1895242_1896064_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
SQF74095.1|1896526_1897912_-	Fumarate hydratase class II	NA	NA	NA	NA	NA
SQF74096.1|1898107_1898503_-	membrane protein	NA	NA	NA	NA	NA
SQF74097.1|1899279_1899432_-	putative staphylococcal protein	NA	NA	NA	NA	NA
SQF74098.1|1899456_1900056_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQF74099.1|1900214_1900685_-|tRNA	tRNA (cytosine34-2-O-)-methyltransferase	tRNA	NA	NA	NA	NA
SQF74100.1|1900689_1901817_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
SQF74101.1|1901967_1902696_-	Glutamine transport ATP-binding protein glnQ	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
SQF74102.1|1902682_1904140_-	extracellular glutamine-binding protein	NA	NA	NA	NA	NA
SQF74103.1|1904397_1905459_-	Regulatory protein	NA	NA	NA	NA	NA
SQF74104.1|1905951_1907154_+|transposase	IS1181 transposase	transposase	NA	NA	NA	NA
>prophage 8
LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	2830002	1932506	1975553	2830002	head,integrase,tail,capsid,holin,terminase	Staphylococcus_phage(86.96%)	69	1927158:1927172	1975895:1975909
1927158:1927172	attL	CTATTAAAGTATGCA	NA	NA	NA	NA
SQF74121.1|1932506_1932692_-	Uncharacterised protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
SQF74122.1|1932693_1932804_-	Uncharacterised protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
SQF74123.1|1932874_1933003_-	Uncharacterised protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	1.1e-15
SQF74124.1|1933270_1934716_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	Q8SDS7	Staphylococcus_phage	100.0	2.8e-296
SQF74125.1|1934696_1935134_-|holin	holin, phage phi LC3 family	holin	Q8SDS8	Staphylococcus_phage	100.0	5.3e-73
SQF74126.1|1935189_1935585_-	phi ETA orf 63-like protein	NA	Q8SDS9	Staphylococcus_phage	100.0	1.6e-68
SQF74127.1|1935590_1936763_-|tail	phage tail fiber protein	tail	Q8SDT0	Staphylococcus_phage	100.0	2.9e-198
SQF74128.1|1936775_1938674_-	phage-related cell wall hydrolase	NA	Q8SDT1	Staphylococcus_phage	100.0	0.0e+00
SQF74129.1|1938810_1939146_-	hypothetical phage-related protein	NA	A0A2H4JEB7	uncultured_Caudovirales_phage	99.1	1.1e-54
SQF74130.1|1939149_1939323_-	phage protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
SQF74131.1|1939326_1939704_-	SLT orf 129-like protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
SQF74132.1|1939703_1941527_-	phiETA ORF57-like protein	NA	B1H3M3	Staphylococcus_phage	100.0	0.0e+00
SQF74133.1|1941526_1943437_-	Putative major teichoic acid biosynthesis protein C	NA	Q8SDT4	Staphylococcus_phage	100.0	0.0e+00
SQF74134.1|1943451_1945353_-|tail	prophage endopeptidase tail family protein	tail	Q8SDT5	Staphylococcus_phage	100.0	0.0e+00
SQF74135.1|1945361_1946309_-	phi 11 orf43	NA	Q8SDT6	Staphylococcus_phage	100.0	2.1e-183
SQF74136.1|1946321_1949789_-	phage tape measure protein	NA	Q4ZDU6	Staphylococcus_virus	99.5	2.8e-281
SQF74137.1|1949805_1950150_-	phi 11 orf41	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
SQF74138.1|1950179_1950545_-	phi 11 orf40	NA	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
SQF74139.1|1950606_1951188_-|tail	phage major tail protein, TP901-1 family; phi 11 orf39	tail	Q8SDU0	Staphylococcus_phage	100.0	4.9e-106
SQF74140.1|1951206_1951590_-	phi 11 orf38	NA	Q8SDU1	Staphylococcus_phage	100.0	2.6e-68
SQF74141.1|1951601_1951949_-	phi 11 orf37	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
SQF74142.1|1951948_1952251_-	phage-like protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
SQF74143.1|1952247_1952580_-	phi 11 orf36	NA	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
SQF74144.1|1952588_1952876_-	phi 11 orf35	NA	Q8SDU4	Staphylococcus_phage	100.0	6.2e-46
SQF74145.1|1952897_1953872_-|capsid,head	Phage head protein/Phage major capsid protein	capsid,head	Q8SDU5	Staphylococcus_phage	100.0	1.3e-183
SQF74146.1|1953885_1954506_-	phi 11 orf33	NA	Q8SDU6	Staphylococcus_phage	100.0	6.4e-64
SQF74147.1|1954614_1954785_-	Uncharacterised protein	NA	Q4ZDV7	Staphylococcus_virus	100.0	3.3e-23
SQF74148.1|1954857_1955853_-|head	phage putative head morphogenesis protein, SPP1 gp7 family Mu50B	head	Q4ZDV8	Staphylococcus_virus	100.0	5.8e-184
SQF74149.1|1955859_1957395_-	phage-like protein	NA	Q8SDU8	Staphylococcus_phage	100.0	3.1e-293
SQF74150.1|1957405_1958692_-|terminase	phage terminase large subunit	terminase	Q8SDU9	Staphylococcus_phage	99.8	2.7e-250
SQF74151.1|1958669_1959110_-|terminase	terminase small subunit	terminase	Q8SDV0	Staphylococcus_phage	100.0	2.8e-74
SQF74152.1|1959296_1959719_-	phage transcriptional activator RinA	NA	Q8SDV1	Staphylococcus_phage	100.0	1.6e-74
SQF74153.1|1959742_1959889_-	phage protein	NA	A0A059T5A8	Staphylococcus_phage	100.0	2.2e-15
SQF74154.1|1959889_1960066_-	transcriptional activator rinb-like protein	NA	Q77FU4	Staphylococcus_phage	98.3	8.5e-22
SQF74155.1|1960065_1960266_-	phage protein	NA	A0A2I6PF22	Staphylococcus_phage	98.5	4.0e-28
SQF74156.1|1960240_1960429_-	phage protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
SQF74157.1|1960425_1960671_-	phage-like protein	NA	Q9B0F1	Staphylococcus_virus	86.4	2.1e-26
SQF74158.1|1960707_1961217_-	dUTP pyrophosphatase	NA	Q8SDV3	Staphylococcus_phage	100.0	3.3e-90
SQF74159.1|1961209_1961452_-	Uncharacterised protein	NA	Q8SDV4	Staphylococcus_phage	100.0	1.6e-34
SQF74160.1|1961448_1961694_-	Phage protein	NA	Q8SDV5	Staphylococcus_phage	100.0	1.5e-37
SQF74161.1|1961708_1961957_-	phage family protein	NA	A0A2I6PDI0	Staphylococcus_phage	100.0	3.2e-43
SQF74162.1|1961957_1962317_-	PVL ORF-50-like family	NA	Q8SDV7	Staphylococcus_phage	100.0	3.5e-62
SQF74163.1|1962317_1962587_-	helix-turn-helix DNA binding protein	NA	Q8SDV8	Staphylococcus_phage	100.0	1.2e-43
SQF74164.1|1962587_1962773_-	PV83 orf 23-like protein	NA	Q8SDV9	Staphylococcus_phage	100.0	2.4e-27
SQF74165.1|1962777_1963182_-	putative phi ETA-like protein	NA	G4KNP2	Staphylococcus_phage	100.0	1.6e-68
SQF74166.1|1963192_1963414_-	putative phi ETA-like protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
SQF74167.1|1963417_1963633_-	hypothetical phage-related protein	NA	Q4ZBU5	Staphylococcus_virus	100.0	4.8e-35
SQF74168.1|1963629_1964871_-	prophage L54a, replicative DNA helicase	NA	Q8SDW1	Staphylococcus_phage	100.0	5.7e-229
SQF74169.1|1964867_1965224_-	phage protein	NA	B7T0A8	Staphylococcus_virus	97.5	2.2e-61
SQF74170.1|1965223_1966030_-	phi PV83 orf 20-like protein	NA	Q8SDW2	Staphylococcus_phage	100.0	2.1e-107
SQF74171.1|1966001_1966694_-	phi PV83 orf 19-like protein	NA	Q8SDW3	Staphylococcus_phage	100.0	6.1e-132
SQF74172.1|1966706_1967261_-	Single stranded DNA-binding protein,phage-associated	NA	A7TWM8	Staphylococcus_phage	100.0	1.0e-100
SQF74173.1|1967290_1968070_-	Uncharacterised protein	NA	Q8SDW5	Staphylococcus_phage	100.0	2.5e-142
SQF74174.1|1968070_1968607_-	bacteriophage Mu Gam-like protein	NA	A0A2I6PD93	Staphylococcus_phage	100.0	1.7e-81
SQF74175.1|1968619_1968880_-	phi PVL orf 39-like protein	NA	Q8SDW6	Staphylococcus_phage	100.0	7.6e-43
SQF74176.1|1968860_1969190_-	phage protein	NA	D2JGJ7	Staphylococcus_phage	100.0	1.4e-33
SQF74177.1|1969279_1969441_-	phage protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
SQF74178.1|1969433_1969652_-	phage protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	4.3e-31
SQF74179.1|1969668_1970118_-	phi PV83 orf 10-like protein	NA	A0A0H3U2S4	Staphylococcus_phage	100.0	2.3e-79
SQF74180.1|1970159_1970384_-	phage protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
SQF74181.1|1970384_1971176_-	prophage L54a, antirepressor	NA	Q8SDX0	Staphylococcus_phage	100.0	1.5e-145
SQF74182.1|1971332_1971641_-	Uncharacterised protein	NA	S4V9P0	Staphylococcus_phage	100.0	1.3e-49
SQF74183.1|1971655_1971874_-	helix-turn-helix family protein	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
SQF74184.1|1972015_1972735_+	helix-turn-helix family protein	NA	Q8SDX2	Staphylococcus_phage	100.0	9.8e-133
SQF74185.1|1972804_1972972_+	Putative cytosolic protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
SQF74186.1|1973131_1973317_+	PV83 orf 4-like protein	NA	Q8SDX3	Staphylococcus_phage	100.0	6.6e-25
SQF74187.1|1973352_1974258_+	phage protein	NA	A0A0F6N3N6	Staphylococcus_phage	100.0	1.4e-168
SQF74188.1|1974194_1974395_-	excisionase-like protein	NA	Q38044	Staphylococcus_phage	100.0	5.6e-30
SQF74189.1|1974506_1975553_+|integrase	phage integrase family protein	integrase	Q38045	Staphylococcus_phage	100.0	4.2e-201
1975895:1975909	attR	CTATTAAAGTATGCA	NA	NA	NA	NA
>prophage 9
LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	2830002	1996928	2094473	2830002	head,tail,protease,capsid,tRNA,holin,terminase,portal	Staphylococcus_phage(90.12%)	117	NA	NA
SQF74212.1|1996928_1998356_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
SQF74213.1|1998368_1999826_-|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	tRNA	NA	NA	NA	NA
SQF74214.1|1999827_2000130_-|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	tRNA	NA	NA	NA	NA
SQF74215.1|2000496_2002035_+	Sodium/proline symporter	NA	NA	NA	NA	NA
SQF74216.1|2002123_2003323_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA	NA
SQF74217.1|2003335_2005339_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
SQF74218.1|2005342_2007535_-	ATP-dependent DNA helicase UvrD/PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
SQF74219.1|2007531_2008224_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA	NA
SQF74220.1|2008395_2008698_-	His repressor	NA	NA	NA	NA	NA
SQF74221.1|2008806_2010102_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
SQF74222.1|2010962_2012129_+	Staphopain A precursor	NA	NA	NA	NA	NA
SQF74223.1|2012159_2012486_+|protease	putative cysteine protease inhibitor (Staphostatin A)	protease	NA	NA	NA	NA
SQF74224.1|2012777_2012951_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF74225.1|2012931_2013534_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA	NA
SQF74226.1|2013804_2014626_-	NH(3)-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
SQF74227.1|2014618_2016088_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
SQF74228.1|2016271_2017348_+	nitric-oxide synthase	NA	NA	NA	NA	NA
SQF74229.1|2017367_2018162_+	ACT domain protein	NA	NA	NA	NA	NA
SQF74230.1|2018351_2019914_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA	NA
SQF74231.1|2020118_2021216_-	cell wall surface anchor family protein	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
SQF74232.1|2021587_2022148_+	Nicotinamidase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
SQF74233.1|2022200_2023130_+	inorganic pyrophosphatase	NA	NA	NA	NA	NA
SQF74234.1|2023549_2024929_+	Aldehyde dehydrogenase	NA	NA	NA	NA	NA
SQF74235.1|2025048_2026077_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
SQF74236.1|2026346_2026748_+	yolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
SQF74237.1|2027320_2027494_-	exported protein	NA	NA	NA	NA	NA
SQF74238.1|2027872_2028985_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
SQF74239.1|2029041_2029884_-	exported protein	NA	NA	NA	NA	NA
SQF74240.1|2029880_2030438_-	Predicted membrane protein	NA	NA	NA	NA	NA
SQF74241.1|2030497_2031022_-	membrane protein	NA	NA	NA	NA	NA
SQF74242.1|2031142_2031706_+	Thioredoxin	NA	NA	NA	NA	NA
SQF74243.1|2031771_2032512_-	ABC-2 transporter family protein	NA	NA	NA	NA	NA
SQF74244.1|2032511_2033384_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
SQF74245.1|2033380_2034061_-	membrane protein	NA	NA	NA	NA	NA
SQF74246.1|2034061_2034958_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
SQF74247.1|2034954_2035335_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF74248.1|2035593_2035770_-	membrane protein	NA	NA	NA	NA	NA
SQF74249.1|2036310_2037597_+	Aspartate aminotransferase	NA	NA	NA	NA	NA
SQF74250.1|2037920_2038211_-	truncated map-w protein; extracellular adherence protein of broad specificity Eap/Map	NA	NA	NA	NA	NA
SQF74251.1|2038221_2039976_-	MHC class II analog (pseudogene)	NA	NA	NA	NA	NA
SQF74252.1|2040361_2040562_+	beta-hemolysin	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
SQF74253.1|2041736_2042087_-	Involved in expression of fibrinogen binding protein, phage associated	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
SQF74254.1|2042769_2043219_+	Chemotaxis-inhibiting protein CHIPS, phage associated	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
SQF74255.1|2043313_2043610_-	amidase	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
SQF74256.1|2044298_2044790_-	Staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	100.0	3.6e-86
SQF74257.1|2044980_2045736_-	Autolysin	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
SQF74258.1|2045747_2046002_-|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
SQF74259.1|2046539_2046770_-	phage protein	NA	D2JLG2	Staphylococcus_phage	100.0	1.2e-31
SQF74260.1|2046893_2047181_-	phage protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
SQF74261.1|2047227_2047380_-	phage protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
SQF74262.1|2047369_2051155_-	phage minor structural protein	NA	A0A1P8L6B8	Staphylococcus_phage	100.0	0.0e+00
SQF74263.1|2051170_2052661_-|tail	phage tail family protein	tail	D2JLF8	Staphylococcus_phage	100.0	8.2e-299
SQF74264.1|2052660_2057313_-|tail	phage tail tape measure protein, TP901 family, core region	tail	Q8SDK4	Staphylococcus_phage	100.0	0.0e+00
SQF74265.1|2057550_2057997_-	Bacteriophage	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
SQF74266.1|2058061_2059015_-|tail	phage major tail, phi13 family protein	tail	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
SQF74267.1|2059015_2059396_-	phi PVL orf 12-like protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
SQF74268.1|2059392_2059770_-	gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
SQF74269.1|2059769_2060105_-|head,tail	phage head-tail adaptor	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
SQF74270.1|2060091_2060424_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	Q8SDK7	Staphylococcus_phage	100.0	3.7e-58
SQF74271.1|2060432_2060591_-	Bacteriophage	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
SQF74272.1|2060626_2061874_-|capsid	phage major capsid protein, HK97 family	capsid	Q8SDK8	Staphylococcus_phage	100.0	2.8e-215
SQF74273.1|2061961_2062546_-|head,protease	prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
SQF74274.1|2062538_2063789_-|portal	portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	4.4e-237
SQF74275.1|2063794_2064034_-	phi PVL orf 3-like protein	NA	A7TWC1	Staphylococcus_phage	100.0	7.0e-35
SQF74276.1|2064008_2065703_-	phage Terminase family protein	NA	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
SQF74277.1|2065705_2066173_-|terminase	phage terminase small subunit	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
SQF74278.1|2066302_2066656_-	phage endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	1.3e-66
SQF74279.1|2066662_2067115_-	hypothetical phage-related protein	NA	Q8SDL2	Staphylococcus_phage	100.0	3.6e-80
SQF74280.1|2067229_2067700_-	Phage protein	NA	D2JLE0	Staphylococcus_phage	100.0	3.7e-72
SQF74281.1|2067722_2067923_-	phage protein	NA	D2JLD9	Staphylococcus_phage	100.0	1.4e-28
SQF74282.1|2067922_2068072_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
SQF74283.1|2068068_2068275_-	Protein of uncharacterised function (DUF1381)	NA	A0A1W6JPY0	Staphylococcus_phage	100.0	1.9e-20
SQF74284.1|2068291_2068465_-	Uncharacterised protein	NA	A0A1W6JQ45	Staphylococcus_phage	100.0	4.7e-25
SQF74285.1|2068501_2069038_-	dUTPase family protein	NA	A0A1W6JQ21	Staphylococcus_phage	100.0	9.4e-96
SQF74286.1|2069030_2069201_-	phage protein	NA	A0A1W6JQ22	Staphylococcus_phage	100.0	5.7e-23
SQF74287.1|2069187_2069442_-	phi PVL/orf 52-like protein	NA	A0A1W6JQ06	Staphylococcus_phage	100.0	1.9e-38
SQF74288.1|2069434_2069824_-	PV83 orf 27-like protein	NA	A0A1W6JPV7	Staphylococcus_phage	100.0	3.5e-68
SQF74289.1|2069820_2070165_-	yopX family protein	NA	A0A1W6JPZ1	Staphylococcus_phage	100.0	2.2e-58
SQF74290.1|2070231_2070480_-	phage family protein	NA	A0A1W6JPX8	Staphylococcus_phage	100.0	2.5e-43
SQF74291.1|2070480_2070852_-	PVL ORF-50-like family protein	NA	A0A1W6JPY5	Staphylococcus_phage	100.0	7.5e-52
SQF74292.1|2070852_2071038_-	PV83 orf 23-like protein	NA	A0A1W6JPY2	Staphylococcus_phage	100.0	8.3e-28
SQF74293.1|2071042_2071447_-	putative phi ETA-like protein	NA	A0A0H4ISQ5	Staphylococcus_phage	100.0	9.0e-67
SQF74294.1|2071457_2071679_-	putative phi ETA-like protein	NA	A0A0N9BAW8	Staphylococcus_phage	100.0	9.9e-36
SQF74295.1|2071691_2071850_-	Uncharacterised protein	NA	A1KX06	Staphylococcus_virus	100.0	4.5e-22
SQF74296.1|2071843_2072623_-	phage like DNA replication protein dnaC	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
SQF74297.1|2072632_2073403_-	phi ETA orf 22-like protein	NA	A0A1W6JQ00	Staphylococcus_phage	100.0	6.4e-122
SQF74298.1|2073468_2073750_+	Uncharacterised protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
SQF74299.1|2073742_2073892_-	Uncharacterised protein	NA	A7TWN0	Staphylococcus_phage	100.0	2.4e-17
SQF74300.1|2073888_2074560_-	phi PV83 orf 19-like protein	NA	Q8SDM2	Staphylococcus_phage	100.0	4.4e-127
SQF74301.1|2074572_2075124_-	phi ETA orf 18-like protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
SQF74302.1|2075154_2075934_-	Uncharacterised protein	NA	A0A1W6JPW0	Staphylococcus_phage	100.0	3.3e-142
SQF74303.1|2075926_2076148_-	phage protein	NA	A0A1W6JQ25	Staphylococcus_phage	100.0	9.3e-34
SQF74304.1|2076157_2076418_-	putative phi PVL-like protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
SQF74305.1|2076510_2076672_-	phage protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
SQF74306.1|2076668_2076989_-	Uncharacterized protein conserved in bacteria	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
SQF74307.1|2077047_2077680_+	phage protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
SQF74308.1|2077694_2077835_-	phage protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
SQF74309.1|2077865_2078063_-	Phage protein	NA	Q8SDM8	Staphylococcus_phage	100.0	7.0e-33
SQF74310.1|2078078_2078240_-	putative phage anti-repressor protein	NA	G4KNN1	Staphylococcus_phage	100.0	7.0e-23
SQF74311.1|2078471_2078828_-	putative phage anti-repressor protein	NA	A0A1W6JPW2	Staphylococcus_phage	100.0	3.2e-60
SQF74312.1|2078884_2079424_+	putative phi PVL-like protein	NA	Q8SDN0	Staphylococcus_phage	100.0	1.7e-97
SQF74313.1|2079447_2079708_-	putative phi PVL-like protein	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
SQF74314.1|2079725_2079950_-	putative cro repressor	NA	A7TW90	Staphylococcus_phage	100.0	4.5e-36
SQF74315.1|2080108_2080879_+	putative phage PVL repressor protein	NA	A0A1P8L6G7	Staphylococcus_phage	100.0	6.2e-141
SQF74316.1|2081316_2081442_+	ORF136	NA	A0A2I6PF02	Staphylococcus_phage	100.0	5.1e-13
SQF74317.1|2081438_2082053_-	phi PVL ORF 30-like protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
SQF74318.1|2082160_2083198_+	DNA integration/recombination/inversion protein	NA	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
SQF74319.1|2083254_2084079_+	phospholipase C	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
SQF74320.1|2084316_2085333_-	gamma-hemolysin component B	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
SQF74321.1|2085354_2086410_-	Leukocidin S subunit	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
SQF74322.1|2086844_2088068_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
SQF74323.1|2088439_2089285_-	tetracenomycin polyketide synthesis O-methyltransferase TcmP	NA	NA	NA	NA	NA
SQF74324.1|2089346_2090258_-	ferric hydroxamate receptor 1	NA	NA	NA	NA	NA
SQF74325.1|2090418_2091726_+	Na+-transporting ATP synthase	NA	NA	NA	NA	NA
SQF74326.1|2092578_2093022_-	GCN5-related N-acetyltransferase (GNAT)	NA	NA	NA	NA	NA
SQF74327.1|2093127_2093529_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF74328.1|2093882_2094473_-|terminase	putative phage terminase	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
