assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900475245.1_43024_E01	LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	1	379411-379511	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|129aa|up_6|LS483365.1_372017_372404_-,NA|86aa|up_4|LS483365.1_373354_373612_-,NA|221aa|down_1|LS483365.1_380601_381264_-,NA|179aa|down_7|LS483365.1_387355_387892_-	NA|88aa|up_9|LS483365.1_370130_370394_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|84aa|up_8|LS483365.1_370693_370945_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|194aa|up_7|LS483365.1_371370_371952_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|129aa|up_6|LS483365.1_372017_372404_-	NA	NA|209aa|up_5|LS483365.1_372655_373282_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|86aa|up_4|LS483365.1_373354_373612_-	NA	NA|508aa|up_3|LS483365.1_373726_375250_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_2|LS483365.1_375265_375835_-	TIGR03137, AhpC, peroxiredoxin	NA|269aa|up_1|LS483365.1_376275_377082_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_0|LS483365.1_377162_378551_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|319aa|down_0|LS483365.1_379527_380484_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|LS483365.1_380601_381264_-	NA	NA|136aa|down_2|LS483365.1_381406_381814_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|LS483365.1_382326_382905_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|LS483365.1_382904_384173_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|LS483365.1_384210_385677_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|LS483365.1_385701_387243_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|LS483365.1_387355_387892_-	NA	NA|235aa|down_8|LS483365.1_388284_388989_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|LS483365.1_389387_389660_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_900475245.1_43024_E01	LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	2	614698-614790	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|LS483365.1_611181_611289_+,NA|169aa|down_4|LS483365.1_618537_619044_+,NA|239aa|down_5|LS483365.1_619205_619922_+	NA|313aa|up_9|LS483365.1_605383_606322_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|LS483365.1_606532_607069_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|LS483365.1_607237_607714_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|LS483365.1_607753_609049_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|169aa|up_5|LS483365.1_609091_609598_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|LS483365.1_610096_611107_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|LS483365.1_611181_611289_+	NA	NA|139aa|up_2|LS483365.1_611381_611798_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|LS483365.1_611794_613456_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|LS483365.1_613844_614480_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|LS483365.1_614858_615746_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|329aa|down_1|LS483365.1_615857_616844_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|LS483365.1_616898_617618_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|LS483365.1_617601_618402_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|LS483365.1_618537_619044_+	NA	NA|239aa|down_5|LS483365.1_619205_619922_+	NA	NA|263aa|down_6|LS483365.1_620090_620879_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|LS483365.1_621129_621504_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|LS483365.1_622451_623381_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|LS483365.1_623575_623800_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_900475245.1_43024_E01	LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	3	677958-678056	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|230aa|down_2|LS483365.1_679877_680567_-,NA|100aa|down_5|LS483365.1_681736_682036_+	NA|206aa|up_9|LS483365.1_667132_667750_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|336aa|up_8|LS483365.1_667765_668773_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_7|LS483365.1_669360_670158_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_6|LS483365.1_670518_671163_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_5|LS483365.1_671859_674010_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|142aa|up_4|LS483365.1_674089_674515_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_3|LS483365.1_674704_675421_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_2|LS483365.1_675420_675894_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|215aa|up_1|LS483365.1_676246_676891_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|LS483365.1_677006_677873_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|LS483365.1_678073_679294_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|LS483365.1_679290_679779_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|LS483365.1_679877_680567_-	NA	NA|148aa|down_3|LS483365.1_680693_681137_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|132aa|down_4|LS483365.1_681203_681599_+	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|100aa|down_5|LS483365.1_681736_682036_+	NA	NA|181aa|down_6|LS483365.1_682115_682658_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|LS483365.1_682753_683320_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|LS483365.1_683321_683780_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|LS483365.1_683782_684466_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCA_900475245.1_43024_E01	LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	4	820187-820268	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	820211-820244|820211-820244	LS483365.1_1295412-1295379|LS483365.1_1383820-1383853	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|LS483365.1_819089_819203_+,NA	NA|206aa|up_9|LS483365.1_813944_814562_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|LS483365.1_814716_815211_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|LS483365.1_815609_816032_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|LS483365.1_816179_816896_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|LS483365.1_816978_817518_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|LS483365.1_817667_817988_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|LS483365.1_818131_818488_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|LS483365.1_818645_819026_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|LS483365.1_819089_819203_+	NA	NA|293aa|up_0|LS483365.1_819204_820083_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|down_0|LS483365.1_820821_821211_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|LS483365.1_821203_821500_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|LS483365.1_821749_822775_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|LS483365.1_822767_823463_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|LS483365.1_823480_824302_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|LS483365.1_824655_824850_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|LS483365.1_825082_825934_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|LS483365.1_826261_827023_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|LS483365.1_827120_828428_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|LS483365.1_828542_829784_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_900475245.1_43024_E01	LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	5	869042-869324	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	9	869072-869097|869072-869097|869072-869097|869072-869097|869072-869097|869072-869097|869186-869211|869186-869211|869186-869211	LS483365.1_776936-776911|LS483365.1_869016-869041|LS483365.1_740331-740356|LS483365.1_1087213-1087238|LS483365.1_2786949-2786924|LS483365.1_2787005-2786980|LS483365.1_776992-776967|LS483365.1_777048-777023|LS483365.1_340798-340823	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|LS483365.1_857930_859427_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|LS483365.1_859419_859761_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|LS483365.1_859760_860189_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|LS483365.1_860181_862587_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|LS483365.1_862717_863101_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|LS483365.1_863164_863758_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|LS483365.1_864173_864551_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|LS483365.1_864912_866040_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|LS483365.1_866347_867538_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|LS483365.1_867646_868891_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|LS483365.1_869393_870323_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|LS483365.1_870564_871944_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|LS483365.1_871933_873139_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|LS483365.1_873489_874821_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|LS483365.1_875145_875721_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|LS483365.1_875725_876250_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|LS483365.1_876265_876841_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|LS483365.1_877000_880477_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|LS483365.1_880477_884131_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|LS483365.1_884296_885199_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_900475245.1_43024_E01	LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	6	1002726-1002813	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|LS483365.1_1002822_1002957_-,NA|432aa|down_1|LS483365.1_1003108_1004404_+	NA|224aa|up_9|LS483365.1_990516_991188_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|LS483365.1_991180_993370_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|LS483365.1_993348_994833_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|LS483365.1_994825_995854_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|LS483365.1_995856_996423_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|LS483365.1_996437_997916_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|LS483365.1_997937_999185_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|LS483365.1_999449_1000256_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|LS483365.1_1000248_1001649_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|LS483365.1_1001663_1002239_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|LS483365.1_1002822_1002957_-	NA	NA|432aa|down_1|LS483365.1_1003108_1004404_+	NA	NA|391aa|down_2|LS483365.1_1004828_1006001_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|LS483365.1_1006054_1006597_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|LS483365.1_1006750_1007017_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|LS483365.1_1007019_1008738_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|LS483365.1_1008974_1009208_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|LS483365.1_1009405_1010767_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|LS483365.1_1010763_1011783_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|LS483365.1_1011915_1012578_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCA_900475245.1_43024_E01	LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	7	1785107-1785317	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGANNN	41	3	27	1785145-1785165|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785204-1785223|1785262-1785279	LS483365.1_1785086-1785106|LS483365.1_114835-114854|LS483365.1_258033-258052|LS483365.1_340929-340948|LS483365.1_771485-771466|LS483365.1_771540-771521|LS483365.1_777145-777126|LS483365.1_777203-777184|LS483365.1_777261-777242|LS483365.1_820284-820265|LS483365.1_888742-888723|LS483365.1_1012728-1012709|LS483365.1_1295280-1295299|LS483365.1_1383952-1383933|LS483365.1_1606347-1606328|LS483365.1_1785031-1785050|LS483365.1_1986954-1986935|LS483365.1_2536078-2536097|LS483365.1_2787043-2787024|LS483365.1_258087-258106|LS483365.1_784351-784332|LS483365.1_1087175-1087194|LS483365.1_1344625-1344606|LS483365.1_1640313-1640294|LS483365.1_1996303-1996284|LS483365.1_744931-744950|LS483365.1_1785089-1785106	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|199aa|up_9|LS483365.1_1775626_1776223_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|LS483365.1_1776251_1777109_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|LS483365.1_1777208_1777520_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|LS483365.1_1777584_1778661_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|105aa|up_5|LS483365.1_1778744_1779059_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|LS483365.1_1779183_1780026_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|LS483365.1_1780495_1781140_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|LS483365.1_1781154_1781946_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|LS483365.1_1782495_1783344_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|LS483365.1_1783347_1784757_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|LS483365.1_1785620_1786043_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|LS483365.1_1786059_1786755_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|LS483365.1_1786751_1788413_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|LS483365.1_1788819_1790088_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|LS483365.1_1790204_1796765_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|LS483365.1_1797107_1797419_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|LS483365.1_1797440_1799858_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|LS483365.1_1800145_1801327_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|LS483365.1_1801436_1802390_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|LS483365.1_1802386_1802950_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCA_900475245.1_43024_E01	LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	8	1985505-1985583	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	1985528-1985560|1985528-1985560|1985528-1985560|1985528-1985560|1985528-1985560|1985528-1985560	LS483365.1_776947-776979|LS483365.1_777003-777035|LS483365.1_1295366-1295334|LS483365.1_1606377-1606409|LS483365.1_2621649-2621681|LS483365.1_1383866-1383898	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|LS483365.1_1979699_1979975_+,NA|129aa|up_1|LS483365.1_1983960_1984347_-,NA|138aa|down_1|LS483365.1_1987266_1987680_-	NA|416aa|up_9|LS483365.1_1977622_1978870_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|69aa|up_8|LS483365.1_1978881_1979088_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|LS483365.1_1979228_1979693_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|LS483365.1_1979699_1979975_+	NA	NA|406aa|up_5|LS483365.1_1980252_1981470_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|LS483365.1_1981585_1982215_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|LS483365.1_1982204_1983248_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|LS483365.1_1983244_1983946_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|LS483365.1_1983960_1984347_-	NA	NA|253aa|up_0|LS483365.1_1984563_1985322_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|LS483365.1_1985849_1986836_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|LS483365.1_1987266_1987680_-	NA	NA|244aa|down_2|LS483365.1_1987904_1988636_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_3|LS483365.1_1988637_1989951_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_4|LS483365.1_1990242_1990743_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	DEDDh|185aa|down_5|LS483365.1_1991131_1991686_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_6|LS483365.1_1991753_1992824_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_7|LS483365.1_1993070_1993601_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|down_8|LS483365.1_1993770_1995132_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|down_9|LS483365.1_1995212_1996160_-	PRK13337, PRK13337, putative lipid kinase; Reviewed
GCA_900475245.1_43024_E01	LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	9	2220307-2220396	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_6|LS483365.1_2215178_2215409_-,NA|364aa|up_0|LS483365.1_2219198_2220290_+,NA	NA|148aa|up_9|LS483365.1_2211619_2212063_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_8|LS483365.1_2212262_2212676_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_7|LS483365.1_2213133_2214507_-	pfam01878, EVE, EVE domain	NA|77aa|up_6|LS483365.1_2215178_2215409_-	NA	NA|277aa|up_5|LS483365.1_2215439_2216270_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|49aa|up_4|LS483365.1_2216232_2216379_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|LS483365.1_2216813_2217479_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|LS483365.1_2217630_2217951_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|LS483365.1_2217952_2218933_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|LS483365.1_2219198_2220290_+	NA	NA|68aa|down_0|LS483365.1_2221261_2221465_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|379aa|down_1|LS483365.1_2221523_2222660_-	pfam02037, SAP, SAP domain	NA|286aa|down_2|LS483365.1_2223745_2224603_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|LS483365.1_2224670_2225453_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|LS483365.1_2225684_2227490_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|LS483365.1_2228170_2229709_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|LS483365.1_2229743_2231876_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|LS483365.1_2231887_2232322_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|LS483365.1_2232321_2233428_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2479aa|down_9|LS483365.1_2233746_2241183_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCA_900475245.1_43024_E01	LS483365	Staphylococcus aureus strain NCTC8325 genome assembly, chromosome: 1	10	2344234-2344427	3	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	14	2344257-2344289|2344257-2344289|2344257-2344289|2344257-2344289|2344257-2344289|2344313-2344348|2344313-2344348|2344313-2344348|2344313-2344348|2344372-2344404|2344372-2344404|2344372-2344404|2344372-2344404|2344372-2344404	LS483365.1_776947-776979|LS483365.1_777003-777035|LS483365.1_1295366-1295334|LS483365.1_1383866-1383898|LS483365.1_2621649-2621681|LS483365.1_1087206-1087171|LS483365.1_1785062-1785027|LS483365.1_1606316-1606351|LS483365.1_1996272-1996307|LS483365.1_776891-776923|LS483365.1_776947-776979|LS483365.1_777003-777035|LS483365.1_1295366-1295334|LS483365.1_2621649-2621681	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_8|LS483365.1_2334759_2334924_+,NA|106aa|up_7|LS483365.1_2335168_2335486_+,NA|84aa|up_4|LS483365.1_2340610_2340862_+,NA	NA|303aa|up_9|LS483365.1_2333718_2334627_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|LS483365.1_2334759_2334924_+	NA	NA|106aa|up_7|LS483365.1_2335168_2335486_+	NA	NA|1056aa|up_6|LS483365.1_2335672_2338840_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_5|LS483365.1_2338956_2340222_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_4|LS483365.1_2340610_2340862_+	NA	NA|255aa|up_3|LS483365.1_2340853_2341618_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_2|LS483365.1_2341779_2342220_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_1|LS483365.1_2342212_2343424_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_0|LS483365.1_2343527_2343878_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|341aa|down_0|LS483365.1_2344568_2345591_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|LS483365.1_2345610_2346210_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|LS483365.1_2346216_2346450_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|LS483365.1_2346455_2346902_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|LS483365.1_2346915_2347401_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|LS483365.1_2347397_2348657_-	cd00887, MoeA, MoeA family	NA|169aa|down_6|LS483365.1_2349215_2349722_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_7|LS483365.1_2349752_2350757_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_8|LS483365.1_2350926_2351532_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|224aa|down_9|LS483365.1_2351532_2352204_-	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
