The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	4185	53357	2046573	bacteriocin,transposase,tRNA	Streptococcus_phage(22.22%)	44	NA	NA
SQG01073.1|4185_4755_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
SQG01074.1|4755_8265_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
SQG01075.1|8322_8589_+	S4 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
SQG01076.1|8581_8950_+	cell division protein	NA	NA	NA	NA	NA
SQG01077.1|8954_9077_+	putative extracellular protein	NA	NA	NA	NA	NA
SQG01078.1|9069_10338_+	beta-lactamase	NA	NA	NA	NA	NA
SQG01079.1|10334_11612_+	MesJ/Ycf62 family protein	NA	A7K9Y8	Acanthocystis_turfacea_chlorella_virus	24.6	3.9e-07
SQG01080.1|11615_12158_+	hypoxanthine guanine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.9	4.7e-10
SQG01081.1|12173_14132_+	cell-division protein	NA	H8ZJI5	Ostreococcus_tauri_virus	45.8	3.2e-109
SQG01082.1|14253_14733_+	competence-specific global transcription modulator	NA	NA	NA	NA	NA
SQG01083.1|20224_20554_+|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
SQG01084.1|20732_21071_+|transposase	IS630-Spn1, transposase Orf2	transposase	NA	NA	NA	NA
SQG01085.1|21644_21851_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	83.8	8.1e-24
SQG01086.1|22167_22404_+	recombination regulator RecX	NA	NA	NA	NA	NA
SQG01087.1|22592_23921_+	adenylosuccinate synthetase	NA	L7Y4J5	Megavirus	37.1	3.6e-72
SQG01088.1|24121_24589_+	cytidine/deoxycytidylate deaminase	NA	NA	NA	NA	NA
SQG01089.1|24775_25219_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q2WG49	Clostridium_botulinum_D_phage	47.3	2.1e-29
SQG01090.1|25178_25736_+	phosphoglycerate mutase family protein	NA	NA	NA	NA	NA
SQG01091.1|25848_27111_+	DNA repair protein	NA	NA	NA	NA	NA
SQG01092.1|27183_27681_+	carbonic anhydrase	NA	NA	NA	NA	NA
SQG01093.1|27705_28365_+	repair protein	NA	NA	NA	NA	NA
SQG01094.1|28633_29602_+	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	34.7	4.0e-44
SQG01095.1|29623_30016_-|transposase	transposase-like protein	transposase	A0A1S5SBP9	Streptococcus_phage	88.2	7.9e-44
SQG01096.1|30142_30376_-	adenylosuccinate lyase	NA	NA	NA	NA	NA
SQG01097.1|30699_31053_-|transposase	nuclease family transposase	transposase	NA	NA	NA	NA
SQG01098.1|31269_33939_+	DNA polymerase I - 3'-5' exonuclease and polymerase domains	NA	A0A218MKQ4	uncultured_virus	30.1	1.3e-57
SQG01099.1|34023_34461_+	CoA-binding protein	NA	NA	NA	NA	NA
SQG01100.1|34651_35662_-	membrane protein	NA	NA	NA	NA	NA
SQG01101.1|35810_36980_+	aspartate aminotransferase	NA	NA	NA	NA	NA
SQG01102.1|36976_37747_+	DNA repair protein RecO	NA	NA	NA	NA	NA
SQG01103.1|37743_38736_+	fatty acid/phospholipid synthesis protein	NA	NA	NA	NA	NA
SQG01104.1|38741_38975_+	acyl carrier protein	NA	A0A2I7RIC8	Vibrio_phage	40.6	3.3e-05
SQG01105.1|39017_39311_+|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
SQG01106.1|39513_39744_+|bacteriocin	bacteriocin BlpO	bacteriocin	NA	NA	NA	NA
SQG01107.1|39746_39872_+|bacteriocin	bacteriocin BlpO	bacteriocin	NA	NA	NA	NA
SQG01108.1|40223_40985_-|transposase	IS1167, transposase	transposase	A0A1S5SBP9	Streptococcus_phage	93.7	8.8e-132
SQG01109.1|40981_41500_-|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.1	3.5e-79
SQG01110.1|41901_44055_+	competence factor transporting ATP-binding protein/permease ComA	NA	W8CYL7	Bacillus_phage	28.0	1.0e-44
SQG01111.1|44067_45417_+	competence factor transport protein ComB	NA	NA	NA	NA	NA
SQG01112.1|45586_46294_+	phosphoribosylaminoimidazole-succinocarboxamide synthetase	NA	A0A1D8KNF0	Synechococcus_phage	38.8	6.7e-41
SQG01113.1|46495_50221_+	phosphoribosylformylglycinamidine synthase II (FGAM synthetase)	NA	A6N228	Microbacterium_phage	25.8	2.1e-37
SQG01114.1|50313_51756_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.4	2.6e-55
SQG01115.1|51792_52815_+	phosphoribosylaminoimidazole synthetase	NA	A0A1D7SE90	Cyanophage	43.9	1.6e-64
SQG01116.1|52811_53357_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
>prophage 2
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	105697	141345	2046573	bacteriocin,transposase,tRNA	Streptococcus_phage(60.0%)	37	NA	NA
SQG01164.1|105697_105946_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQG01165.1|106000_108109_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQG01166.1|108105_108747_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
SQG01167.1|108952_109759_+	amino acid ABC transporter periplasmic amino acid-binding protein	NA	NA	NA	NA	NA
SQG01168.1|109775_110972_+	argininosuccinate synthase	NA	NA	NA	NA	NA
SQG01169.1|111000_112392_+	argininosuccinate lyase	NA	NA	NA	NA	NA
SQG01170.1|112680_113544_-	helix-turn-helix domain protein	NA	NA	NA	NA	NA
SQG01171.1|114009_114231_+	transporter, truncation	NA	NA	NA	NA	NA
SQG01172.1|114294_116229_+	Bacteriocin ABC transoporter	NA	W8CYL7	Bacillus_phage	25.7	2.6e-39
SQG01173.1|116221_116689_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01174.1|116685_118038_+	Secreted protein	NA	NA	NA	NA	NA
SQG01175.1|118183_118564_+	Membrane protein	NA	NA	NA	NA	NA
SQG01176.1|119811_119976_+	Membrane protein	NA	NA	NA	NA	NA
SQG01177.1|120143_120515_+	Membrane protein	NA	NA	NA	NA	NA
SQG01178.1|121108_121234_+	Membrane protein	NA	NA	NA	NA	NA
SQG01179.1|121539_122598_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01180.1|122911_123889_+	Leader peptidase	NA	NA	NA	NA	NA
SQG01181.1|124265_124640_+	Membrane protein	NA	NA	NA	NA	NA
SQG01182.1|124847_125750_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01183.1|125805_126159_+	Membrane protein	NA	NA	NA	NA	NA
SQG01184.1|126155_126884_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01185.1|127362_127560_+|bacteriocin	putative bacteriocin	bacteriocin	NA	NA	NA	NA
SQG01186.1|128242_128521_+	membrane associated protein	NA	M1Q0Z8	Streptococcus_phage	50.5	2.5e-20
SQG01187.1|128811_130671_+	pneumococcal surface protein PspA	NA	NA	NA	NA	NA
SQG01188.1|131071_132193_+|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
SQG01189.1|132333_132789_+	mutT/nudix family protein	NA	NA	NA	NA	NA
SQG01190.1|132798_134712_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein GidA	tRNA	NA	NA	NA	NA
SQG01191.1|135091_136771_-	metallo-beta-lactamase superfamily protein 1	NA	NA	NA	NA	NA
SQG01192.1|136772_137006_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG01193.1|137285_137393_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01194.1|137823_137976_-|bacteriocin	bacteriocin-type signal sequence domain-containing protein	bacteriocin	NA	NA	NA	NA
SQG01195.1|137977_138163_-	excreted peptide	NA	NA	NA	NA	NA
SQG01196.1|138340_139024_+	molecular chaperone	NA	NA	NA	NA	NA
SQG01197.1|139020_139458_+	acetyltransferase	NA	NA	NA	NA	NA
SQG01198.1|139447_140458_+	O-sialoglycoprotein endopeptidase	NA	NA	NA	NA	NA
SQG01199.1|140497_140884_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	72.4	1.4e-45
SQG01200.1|140874_141345_-|transposase	transposase-like protein, IS1167	transposase	A0A1S5SBP9	Streptococcus_phage	73.3	3.6e-43
>prophage 3
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	289398	332895	2046573	protease,transposase	Streptococcus_phage(33.33%)	46	NA	NA
SQG01355.1|289398_289614_+|transposase	truncated IS200 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	38.2	3.2e-07
SQG01356.1|289988_290618_-	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
SQG01357.1|290627_291629_-	carbohydrate kinase, PfkB family	NA	NA	NA	NA	NA
SQG01358.1|291659_292301_-	galactose-6-phosphate isomerase subunit LacB	NA	NA	NA	NA	NA
SQG01359.1|292319_293135_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
SQG01360.1|293405_293840_+	PTS system sugar-specific transporter subunit EII	NA	NA	NA	NA	NA
SQG01361.1|293851_295042_+	glucuronyl hydrolase	NA	NA	NA	NA	NA
SQG01362.1|295052_295544_+	N-acetylgalactosamine-specific phosphotransferase EIIB	NA	NA	NA	NA	NA
SQG01363.1|295558_296338_+	PTS system, N-acetylgalactosamine-specific IIC component	NA	NA	NA	NA	NA
SQG01364.1|296324_297143_+	PTS system transporter subunit IID	NA	NA	NA	NA	NA
SQG01365.1|297142_297436_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
SQG01366.1|297457_299359_+	oligohyaluronate lyase	NA	NA	NA	NA	NA
SQG01367.1|299418_300420_+	sugar binding transcriptional regulator RegR	NA	NA	NA	NA	NA
SQG01368.1|300648_300855_-	membrane protein	NA	NA	NA	NA	NA
SQG01369.1|300865_301108_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01370.1|301123_301318_-	transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	9.4e-06
SQG01371.1|301483_302434_+	S-adenosyl-methyltransferase mraW	NA	NA	NA	NA	NA
SQG01372.1|302445_302763_+	cell division protein FtsL	NA	NA	NA	NA	NA
SQG01373.1|302766_305019_+	penicillin-binding protein 2X	NA	NA	NA	NA	NA
SQG01374.1|305020_306001_+	UDP-phosphate-UDP-MurNAc-pentapeptide phospho-MurNAc-pentapeptide transferase	NA	NA	NA	NA	NA
SQG01375.1|306557_308663_+	Group II intron maturase	NA	H6X3M6	Enterobacteria_phage	37.7	3.4e-117
SQG01376.1|308958_309441_-	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
SQG01377.1|309535_311020_-|protease	ATP-dependent Zn protease	protease	NA	NA	NA	NA
SQG01378.1|311172_312780_+	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
SQG01379.1|312938_313112_+	lipoprotein, putative	NA	NA	NA	NA	NA
SQG01380.1|313620_313950_-|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
SQG01381.1|314200_315646_+	capsular polysaccharide biosynthesis protein Cps14A	NA	A0A1X9I5X1	Streptococcus_phage	59.6	3.4e-132
SQG01382.1|315647_316379_+	tyrosine-protein phosphatase CpsB	NA	NA	NA	NA	NA
SQG01383.1|316387_317080_+	capsular polysaccharide biosynthesis protein Cap5A	NA	A0A1X9I5E1	Streptococcus_phage	58.1	4.2e-64
SQG01384.1|317089_317770_+	capsule biosynthesis tyrosine-protein kinase Wze	NA	A0A1X9I5D6	Streptococcus_phage	61.9	8.0e-76
SQG01385.1|317784_319152_+	galactosyl transferase CpsE	NA	NA	NA	NA	NA
SQG01386.1|319183_320368_+	glycoside hydrolase family protein	NA	NA	NA	NA	NA
SQG01387.1|320360_321305_+	glycosyl transferase family protein	NA	NA	NA	NA	NA
SQG01388.1|321320_322367_+	glycoside hydrolase family protein	NA	NA	NA	NA	NA
SQG01389.1|322407_323571_+	polysaccharide polymerase	NA	NA	NA	NA	NA
SQG01390.1|323700_324858_+	glycoside hydrolase family protein	NA	NA	NA	NA	NA
SQG01391.1|324854_326264_+	polysaccharide flippase transporter	NA	NA	NA	NA	NA
SQG01392.1|326299_327538_+	UDP-glucose 6-dehydrogenase	NA	M1I6D5	Acanthocystis_turfacea_Chlorella_virus	49.9	3.3e-104
SQG01393.1|327566_328172_+	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	62.6	1.7e-69
SQG01394.1|328249_329119_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	64.6	2.2e-102
SQG01395.1|329119_329713_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	33.1	3.9e-10
SQG01396.1|329725_330775_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.5	8.3e-72
SQG01397.1|330840_331692_+	dTDP-4-keto-L-rhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.4	1.5e-26
SQG01398.1|331890_332214_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG01399.1|332216_332666_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG01400.1|332736_332895_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 4
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	347718	381471	2046573	transposase,holin,tRNA	Macacine_betaherpesvirus(33.33%)	33	NA	NA
SQG01409.1|347718_349143_+|holin	choline binding protein J	holin	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	1.6e-41
SQG01410.1|349154_349844_+|holin	choline binding protein J	holin	NA	NA	NA	NA
SQG01411.1|349941_350958_+|holin	choline binding protein C	holin	NA	NA	NA	NA
SQG01412.1|351079_351958_+	mevalonate kinase	NA	NA	NA	NA	NA
SQG01413.1|351939_352893_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQG01414.1|352879_353887_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQG01415.1|353870_354881_+	isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2	NA	NA	NA	NA	NA
SQG01416.1|354958_355657_+	transporter	NA	NA	NA	NA	NA
SQG01417.1|355653_356649_+	histidine kinase	NA	NA	NA	NA	NA
SQG01418.1|356662_357295_+	response regulator	NA	NA	NA	NA	NA
SQG01419.1|357295_357442_+	DNA alkylation repair enzyme, truncation	NA	NA	NA	NA	NA
SQG01420.1|358214_358409_+	V8-like Glu-specific endopeptidase	NA	NA	NA	NA	NA
SQG01421.1|358498_359107_+|holin	choline binding protein G	holin	NA	NA	NA	NA
SQG01422.1|359066_359360_+|holin	choline binding protein G	holin	NA	NA	NA	NA
SQG01423.1|359378_360263_+|holin	choline binding protein F	holin	NA	NA	NA	NA
SQG01424.1|360390_360576_-|transposase	IS3-Spn1 transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	50.0	2.7e-10
SQG01425.1|360523_360847_-|transposase	IS3-Spn1 transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	48.8	1.1e-14
SQG01426.1|361324_361594_-|transposase	transposase InsK for insertion sequence	transposase	NA	NA	NA	NA
SQG01427.1|361745_363515_+	PTS system mannitol-specific transporter subunit EIIBC	NA	NA	NA	NA	NA
SQG01428.1|363538_365494_+	putative transcriptional regulator MtlR	NA	NA	NA	NA	NA
SQG01429.1|365495_365933_+	mannitol-specific phosphotransferase EIIA	NA	NA	NA	NA	NA
SQG01430.1|365994_367131_+	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
SQG01431.1|367929_369213_+	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)	NA	NA	NA	NA	NA
SQG01432.1|369260_371627_-	recombinase D	NA	A0A0K2FLP8	Brevibacillus_phage	26.9	2.2e-56
SQG01433.1|371860_372475_-	signal peptidase I	NA	NA	NA	NA	NA
SQG01434.1|372486_373359_-	ribonuclease HIII	NA	NA	NA	NA	NA
SQG01435.1|373445_373748_+|tRNA	seryl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQG01436.1|373744_374293_+	CvpA family protein	NA	NA	NA	NA	NA
SQG01437.1|374396_376733_+	mismatch repair ATPase (MutS family)	NA	Q94M10	Lactobacillus_phage	50.0	1.8e-21
SQG01438.1|377074_378397_+	Na+/alanine symporter	NA	NA	NA	NA	NA
SQG01439.1|378614_379163_+	macrophage infectivity potentiator protein	NA	NA	NA	NA	NA
SQG01440.1|379272_380172_+	exfoliative toxin	NA	NA	NA	NA	NA
SQG01441.1|380196_381471_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.7	1.5e-91
>prophage 5
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	424232	485904	2046573	bacteriocin,protease,transposase,integrase	Bacillus_phage(20.0%)	58	448628:448644	479760:479776
SQG01486.1|424232_424403_-|transposase	ISSpo8 transposase	transposase	NA	NA	NA	NA
SQG01487.1|425054_426278_-	ROK family protein	NA	NA	NA	NA	NA
SQG01488.1|426445_427768_+	PTS system cellobiose-specific IIC component	NA	NA	NA	NA	NA
SQG01489.1|427769_429656_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01490.1|429823_430168_+	lactose-specific phosphotransferase EIIA	NA	NA	NA	NA	NA
SQG01491.1|430177_431590_+	6-phospho-beta-galactosidase	NA	NA	NA	NA	NA
SQG01492.1|431658_433338_+	pts system lactose-specific transporter subunit EIIBC	NA	NA	NA	NA	NA
SQG01493.1|433465_434905_-	potassium uptake protein	NA	NA	NA	NA	NA
SQG01494.1|434908_436258_-	potassium uptake protein	NA	NA	NA	NA	NA
SQG01495.1|436446_437295_+	Molybdate/tungstate binding protein	NA	NA	NA	NA	NA
SQG01496.1|437309_437858_+	protein YdcD	NA	NA	NA	NA	NA
SQG01497.1|437864_438077_+	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
SQG01498.1|438178_439861_+	cobalt ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	2.0e-19
SQG01499.1|439845_440676_+	ABC transporter permease	NA	NA	NA	NA	NA
SQG01500.1|440868_441372_+	RNA methyltransferase	NA	NA	NA	NA	NA
SQG01501.1|441830_442394_+	riboflavin transporter	NA	NA	NA	NA	NA
SQG01502.1|442383_443034_+	phosphatase	NA	NA	NA	NA	NA
SQG01503.1|443061_443451_+	putative histone acetyltransferase	NA	NA	NA	NA	NA
SQG01504.1|443455_443905_+	sortase-like acyltransferase	NA	NA	NA	NA	NA
SQG01505.1|444032_444620_+	DNA-dependent RNA Polymerase, delta subunit (RNAP delta factor)	NA	NA	NA	NA	NA
SQG01506.1|445009_446617_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
SQG01507.1|447175_448807_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
448628:448644	attL	AGTCATCCCAATACCAA	NA	NA	NA	NA
SQG01508.1|449099_454079_+	endo-beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
SQG01509.1|454168_455365_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
SQG01510.1|455500_456028_+	signal peptide	NA	NA	NA	NA	NA
SQG01511.1|456104_456461_+	transcriptional repressor of the glutamine synthetase gene	NA	NA	NA	NA	NA
SQG01512.1|456497_457844_+	glutamate-ammonia ligase	NA	NA	NA	NA	NA
SQG01513.1|458023_458173_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01514.1|458623_459904_+	type I restriction enzyme	NA	A0A1V0SLK8	Klosneuvirus	25.6	1.8e-12
SQG01515.1|459857_460397_-	type I restriction enzyme	NA	NA	NA	NA	NA
SQG01516.1|460467_461265_-|integrase	integrase/recombinase, phage integrase family	integrase	A0A0H4TI16	Erysipelothrix_phage	28.7	1.7e-21
SQG01517.1|461321_462890_-	type I site-specific deoxyribonuclease chain S	NA	NA	NA	NA	NA
SQG01518.1|462889_464353_-	type I restriction-modification system M protein	NA	NA	NA	NA	NA
SQG01519.1|464365_466699_-	type I restriction-modification system, R subunit	NA	Q5YA94	Bacillus_phage	27.6	5.8e-25
SQG01520.1|467071_467272_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01521.1|467306_467816_+	Protein of uncharacterised function (DUF2812)	NA	NA	NA	NA	NA
SQG01522.1|467979_469014_+	heat-inducible transcription repressor	NA	NA	NA	NA	NA
SQG01523.1|469040_469565_+	heat shock protein GrpE	NA	NA	NA	NA	NA
SQG01524.1|470044_471868_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
SQG01525.1|471869_472226_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01526.1|472627_473746_+	dnaJ protein, Heat-shock protein (activation of DnaK)	NA	E3T4P7	Cafeteria_roenbergensis_virus	30.2	1.6e-20
SQG01527.1|474080_474368_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01528.1|474377_474788_-	protein hit	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
SQG01529.1|474855_475587_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	4.1e-25
SQG01530.1|475583_476633_+	ABC transporter permease	NA	NA	NA	NA	NA
SQG01531.1|476800_477130_-	BlpT protein, fusion	NA	NA	NA	NA	NA
SQG01532.1|477405_477744_+	regulatory protein, single domain response regulator	NA	NA	NA	NA	NA
SQG01533.1|477748_478486_+	response regulator	NA	NA	NA	NA	NA
SQG01534.1|478499_479840_+	histidine kinase	NA	NA	NA	NA	NA
479760:479776	attR	AGTCATCCCAATACCAA	NA	NA	NA	NA
SQG01535.1|479881_480037_-	double glycine cleavage site bacteriolysin superfamily	NA	NA	NA	NA	NA
SQG01536.1|480093_481101_-	BlpC ABC transporter	NA	NA	NA	NA	NA
SQG01537.1|481119_481455_-	BlpC ABC transporter	NA	NA	NA	NA	NA
SQG01538.1|481465_483091_-	competence factor transporting ATP-binding protein/permease ComA	NA	W8CYL7	Bacillus_phage	27.1	1.2e-40
SQG01539.1|483035_483623_-|protease,bacteriocin	bacteriocin transporter C39 protease domain BlpA2	protease,bacteriocin	NA	NA	NA	NA
SQG01540.1|483912_484146_+|bacteriocin	putative bacteriocin BlpI	bacteriocin	NA	NA	NA	NA
SQG01541.1|484177_484867_+|protease	metal-dependent CAAX amino terminal membrane protease	protease	NA	NA	NA	NA
SQG01542.1|484908_485142_+	immunity protein BlpZ	NA	NA	NA	NA	NA
SQG01543.1|485292_485904_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
>prophage 6
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	570404	620520	2046573	holin,bacteriocin,protease,transposase,tRNA	Staphylococcus_phage(28.57%)	39	NA	NA
SQG01629.1|570404_576839_+|protease	serine protease	protease	NA	NA	NA	NA
SQG01630.1|577463_577940_+	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
SQG01631.1|577977_578283_+	PTS system IIB component (galactitol/fructose specific)	NA	NA	NA	NA	NA
SQG01632.1|578330_579806_+	PTS system galactitol-specific family transporter subunit IIC	NA	NA	NA	NA	NA
SQG01633.1|580110_586797_+	beta-galactosidase	NA	NA	NA	NA	NA
SQG01634.1|587178_587490_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG01635.1|587653_587899_-|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	42.3	2.1e-10
SQG01636.1|588110_588470_-	integral membrane protein	NA	NA	NA	NA	NA
SQG01637.1|588561_589014_+	radical SAM family protein	NA	NA	NA	NA	NA
SQG01638.1|589071_589518_+	putative Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	49.6	4.2e-33
SQG01639.1|589501_590059_+	SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	40.9	2.4e-33
SQG01640.1|590051_590306_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01641.1|590317_592372_+	Na+/H+ antiporter	NA	NA	NA	NA	NA
SQG01642.1|592550_593411_+	ribonuclease BN	NA	NA	NA	NA	NA
SQG01643.1|593621_594332_+	cytochrome c-type biogenesis protein	NA	NA	NA	NA	NA
SQG01644.1|594351_594918_+	thioredoxin	NA	NA	NA	NA	NA
SQG01645.1|594928_596041_+	peptide methionine sulfoxide reductase	NA	NA	NA	NA	NA
SQG01646.1|596308_597046_+	DNA-binding response regulator	NA	NA	NA	NA	NA
SQG01647.1|597042_598734_+	histidine kinase	NA	Q9EYF3	Enterobacteria_phage	32.7	9.4e-25
SQG01648.1|598849_599413_+	UPF0340 protein SSU05	NA	NA	NA	NA	NA
SQG01649.1|599434_605065_+|protease	zinc metalloprotease ZmpB	protease	NA	NA	NA	NA
SQG01650.1|605134_606856_+	chorismate binding enzyme para-aminobenzoate synthetase	NA	S4VT78	Pandoravirus	27.0	2.9e-29
SQG01651.1|606856_606964_+	putative alpha/beta superfamily hydrolase	NA	NA	NA	NA	NA
SQG01652.1|607013_608003_+|holin	choline binding protein	holin	NA	NA	NA	NA
SQG01653.1|608138_609098_+	glucokinase	NA	NA	NA	NA	NA
SQG01654.1|609194_610034_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	55.0	3.6e-86
SQG01655.1|610081_610252_-	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQG01656.1|610372_611257_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQG01657.1|611249_612488_+	GTP-binding protein HflX	NA	NA	NA	NA	NA
SQG01658.1|612480_613104_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
SQG01659.1|613118_614048_+	hydrolase	NA	NA	NA	NA	NA
SQG01660.1|614068_614824_+	dehydrogenase	NA	NA	NA	NA	NA
SQG01661.1|614877_615846_-	transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	28.9	1.5e-06
SQG01662.1|615849_616119_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG01663.1|616118_616499_+	rhodanese family protein	NA	NA	NA	NA	NA
SQG01664.1|616854_617580_-	ribosomal small subunit pseudouridine synthase A	NA	NA	NA	NA	NA
SQG01665.1|617741_619583_+	GTP-binding protein TypA	NA	NA	NA	NA	NA
SQG01666.1|619602_619857_+	membrane protein	NA	NA	NA	NA	NA
SQG01667.1|620172_620520_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 7
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	698422	812905	2046573	protease,transposase,tRNA	Streptococcus_phage(12.9%)	108	NA	NA
SQG01757.1|698422_698638_+|tRNA	seryl-tRNA synthetase family protein	tRNA	NA	NA	NA	NA
SQG01758.1|698841_699378_-	biotin synthase	NA	NA	NA	NA	NA
SQG01759.1|699574_700921_-	glutathione reductase	NA	NA	NA	NA	NA
SQG01760.1|701185_702385_+	membrane-fusion protein	NA	NA	NA	NA	NA
SQG01761.1|702368_703070_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.9	4.0e-38
SQG01762.1|703071_704331_+	ABC transporter permeae	NA	NA	NA	NA	NA
SQG01763.1|704454_706452_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SEZ7	Hokovirus	31.4	2.3e-83
SQG01764.1|706782_707103_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
SQG01765.1|707106_707982_+	membrane protein	NA	NA	NA	NA	NA
SQG01766.1|707996_708923_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
SQG01767.1|709022_709259_+|tRNA	methionine--tRNA ligase	tRNA	NA	NA	NA	NA
SQG01768.1|709251_709950_+	short chain dehydrogenase	NA	A0A0K0KVL6	Prochlorococcus_phage	29.2	1.4e-06
SQG01769.1|709960_710440_+	NTP pyrophosphohydrolase including oxidative damage repair enzymes	NA	NA	NA	NA	NA
SQG01770.1|710477_711176_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQG01771.1|711217_712087_+	PEP-utilizing enzyme family protein	NA	NA	NA	NA	NA
SQG01772.1|712061_712502_+	acetyltransferase	NA	NA	NA	NA	NA
SQG01773.1|712624_715171_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	27.2	1.3e-73
SQG01774.1|715279_715954_+	DNA-binding response regulator CiaR	NA	W8CYM9	Bacillus_phage	33.6	3.1e-27
SQG01775.1|715943_717278_+	histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	34.0	1.2e-06
SQG01776.1|717311_717599_-	membrane protein	NA	NA	NA	NA	NA
SQG01777.1|717738_718668_+	U32 family peptidase	NA	NA	NA	NA	NA
SQG01778.1|718867_721318_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	47.5	6.4e-200
SQG01779.1|721354_722578_+	RodA	NA	NA	NA	NA	NA
SQG01780.1|722588_723143_+	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	27.2	6.4e-07
SQG01781.1|723218_723791_+	phosphatase	NA	NA	NA	NA	NA
SQG01782.1|723805_725752_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	45.3	7.2e-146
SQG01783.1|725833_727561_+	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
SQG01784.1|728303_728708_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG01785.1|728739_729249_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQG01786.1|729882_730182_-	Domain of uncharacterised function (DUF1827)	NA	NA	NA	NA	NA
SQG01787.1|730346_730769_-	mutT/nudix family protein	NA	NA	NA	NA	NA
SQG01788.1|730879_731209_+|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
SQG01789.1|731933_734192_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	K4FB40	Cronobacter_phage	40.4	4.6e-128
SQG01790.1|734420_734651_-	Protein of uncharacterised function (DUF1797)	NA	NA	NA	NA	NA
SQG01791.1|734840_735524_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
SQG01792.1|735523_736258_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	3.0e-36
SQG01793.1|736411_737269_+	FolD bifunctional protein; includes: methylenetetrahydrofolate dehydrogenase, methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	41.5	6.8e-40
SQG01794.1|737410_738283_+	carbohydrate kinase	NA	NA	NA	NA	NA
SQG01795.1|738564_739248_+	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQG01796.1|739261_740473_+	phosphopentomutase	NA	NA	NA	NA	NA
SQG01797.1|740474_740885_+	phosphopentomutase	NA	NA	NA	NA	NA
SQG01798.1|741032_741842_+	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQG01799.1|742305_743049_+	topology modulation protein	NA	NA	NA	NA	NA
SQG01800.1|743094_743298_+	exported glycosyl hydrolase	NA	NA	NA	NA	NA
SQG01801.1|743322_743835_+	pneumolysin	NA	NA	NA	NA	NA
SQG01802.1|744492_745203_+	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQG01803.1|745225_745750_-	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	40.6	3.4e-26
SQG01804.1|745802_746039_-	putative 30S ribosomal protein S20	NA	NA	NA	NA	NA
SQG01805.1|746106_747027_-	pantothenate kinase	NA	NA	NA	NA	NA
SQG01806.1|747224_747665_+	membrane protein (pseudogene)	NA	NA	NA	NA	NA
SQG01807.1|747871_748462_+	16S RNA G1207 methylase RsmC	NA	NA	NA	NA	NA
SQG01808.1|748458_749736_+	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	51.3	4.1e-113
SQG01809.1|749753_750416_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
SQG01810.1|750402_750792_+	cytidine deaminase	NA	NA	NA	NA	NA
SQG01811.1|750881_751934_+	lipoprotein	NA	NA	NA	NA	NA
SQG01812.1|752077_753613_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.5	1.4e-19
SQG01813.1|753605_754664_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
SQG01814.1|754666_755623_+	ABC transporter, membrane-spanning permease	NA	NA	NA	NA	NA
SQG01815.1|755707_755920_+|transposase	transposase orfA, ISSmu1	transposase	NA	NA	NA	NA
SQG01816.1|756055_756223_+|transposase	IS3-Spn1 transposase	transposase	NA	NA	NA	NA
SQG01817.1|756222_756591_+|transposase	degenerate transposase (Orf2)	transposase	A0A1B1P773	Bacillus_phage	53.6	1.2e-12
SQG01818.1|756566_757055_+|transposase	IS3-Spn1 transposase, truncation	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	51.6	1.2e-38
SQG01819.1|757097_757739_-	putative glycerol-3-phosphate acyltransferase PlsY	NA	NA	NA	NA	NA
SQG01820.1|757874_759818_+	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.0	1.2e-124
SQG01821.1|759817_759925_+	N-6 DNA methylase	NA	NA	NA	NA	NA
SQG01822.1|760273_762709_+	topoisomerase IV subunit A, ParC	NA	G3M9Z5	Bacillus_virus	31.1	1.8e-93
SQG01823.1|762838_763861_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQG01824.1|763916_764621_+	extracellular oligopeptide-binding protein	NA	NA	NA	NA	NA
SQG01825.1|764685_765375_+	permease	NA	NA	NA	NA	NA
SQG01826.1|765371_766295_+	permease	NA	NA	NA	NA	NA
SQG01827.1|766309_766954_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQG01828.1|767121_767352_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQG01829.1|767724_768927_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQG01830.1|769185_769590_-|transposase	degenerate transposase (orf2)	transposase	A0A1S5SBP9	Streptococcus_phage	94.6	2.4e-64
SQG01831.1|769586_769874_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	70.6	3.3e-23
SQG01832.1|769870_770389_-|transposase	IS1167 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	97.5	3.9e-83
SQG01833.1|770582_771080_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQG01834.1|771079_772735_+	DNA polymerase III subunits gamma and tau	NA	A0A1U9WR94	Streptococcus_virus	42.2	1.0e-47
SQG01835.1|772762_772957_+	membrane protein	NA	NA	NA	NA	NA
SQG01836.1|773106_773877_+	FeS assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	28.5	2.5e-09
SQG01837.1|773904_775167_+	FeS assembly protein SufD	NA	NA	NA	NA	NA
SQG01838.1|775177_776404_+	class-V aminotransferase	NA	Q2XUY6	environmental_halophage	44.4	9.6e-104
SQG01839.1|776390_776831_+	nifU family protein	NA	A0A2P1CJL8	Mycobacterium_phage	38.2	4.8e-13
SQG01840.1|776884_778297_+	Iron-sulfur cluster assembly protein SufB	NA	NA	NA	NA	NA
SQG01841.1|778495_779737_-	D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 3	NA	B6DZZ7	Stx2-converting_phage	25.5	8.2e-18
SQG01842.1|779839_780949_+	putative permease	NA	NA	NA	NA	NA
SQG01843.1|782373_783114_+	transcriptional repressor of fructose operon	NA	NA	NA	NA	NA
SQG01844.1|783110_784022_+	fructose-1-phosphate kinase	NA	NA	NA	NA	NA
SQG01845.1|784018_785971_+	PTS system, fructose specific IIBC component	NA	NA	NA	NA	NA
SQG01846.1|786056_788360_+	DNA translocase, cell division protein	NA	S5VNE3	Mycobacterium_phage	49.9	1.0e-85
SQG01847.1|788404_788833_-	membrane protein	NA	NA	NA	NA	NA
SQG01848.1|788910_790113_+	class-V aminotransferase	NA	NA	NA	NA	NA
SQG01849.1|790121_791336_+	thiamine biosynthesis ATP pyrophosphatase	NA	NA	NA	NA	NA
SQG01850.1|791470_792295_+	Esterase	NA	NA	NA	NA	NA
SQG01851.1|792316_792652_+	esterase superfamily protein	NA	NA	NA	NA	NA
SQG01852.1|792648_793056_+	esterase	NA	NA	NA	NA	NA
SQG01853.1|793068_794235_+	carbamoylphosphate synthase large subunit	NA	NA	NA	NA	NA
SQG01854.1|794742_796236_+	type I restriction modification enzyme methylase subunit	NA	A0A2H4UVB0	Bodo_saltans_virus	31.8	3.0e-27
SQG01855.1|796248_796860_+	type I restriction-modification system subunit S	NA	NA	NA	NA	NA
SQG01856.1|796938_800289_+	type I restriction-modification system R subunit	NA	A0A2H4P9W3	Gordonia_phage	24.8	3.1e-11
SQG01857.1|800559_800760_+	chlorohydrolase	NA	NA	NA	NA	NA
SQG01858.1|800874_801345_-	arginine repressor	NA	NA	NA	NA	NA
SQG01859.1|801361_803635_-	x-prolyl-dipeptidyl aminopeptidase	NA	NA	NA	NA	NA
SQG01860.1|803980_807082_+	DNA-polymerase III alpha-chain	NA	A0A291AWR1	Streptomyces_phage	32.6	4.4e-113
SQG01861.1|807164_808172_+	6-phosphofructokinase	NA	NA	NA	NA	NA
SQG01862.1|808230_809736_+	pyruvate kinase	NA	NA	NA	NA	NA
SQG01863.1|811542_812415_+	lipoprotein, putative	NA	NA	NA	NA	NA
SQG01864.1|812716_812905_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
>prophage 8
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	825068	871442	2046573	protease,transposase,holin,tRNA	Streptococcus_phage(50.0%)	49	NA	NA
SQG01880.1|825068_825944_-|transposase	IS1239 transposase	transposase	H7BWC8	unidentified_phage	31.6	6.8e-27
SQG01881.1|826650_828126_+	ornithine decarboxylase family protein	NA	NA	NA	NA	NA
SQG01882.1|828279_828807_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQG01883.1|829062_829923_+	spermidine synthase	NA	NA	NA	NA	NA
SQG01884.1|829919_831179_+	dehydrogenase family protein, saccharopine dehydrogenase	NA	NA	NA	NA	NA
SQG01885.1|831178_832306_+	LysA-like decarboxylase, diaminopimelate decarboxylase putative	NA	NA	NA	NA	NA
SQG01886.1|832302_833388_+	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	47.2	7.7e-89
SQG01887.1|833397_834273_+	carbon-nitrogen hydrolase family protein	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	49.7	4.2e-77
SQG01888.1|834453_835263_-	Cof family protein	NA	NA	NA	NA	NA
SQG01889.1|835534_835756_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01890.1|835809_836481_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
SQG01891.1|836722_837631_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
SQG01892.1|837627_838089_+	lipoprotein signal peptidase, signal peptidase type II	NA	NA	NA	NA	NA
SQG01893.1|838078_838966_+	23S rluA family pseudouridine synthase	NA	NA	NA	NA	NA
SQG01894.1|838968_840852_+|holin	choline binding protein E CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	22.1	4.0e-08
SQG01895.1|840952_842062_+	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.9e-114
SQG01896.1|842071_843334_+	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	64.5	2.5e-139
SQG01897.1|843337_844135_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.6	2.7e-59
SQG01898.1|844250_844889_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	68.1	1.3e-75
SQG01899.1|844885_845776_+	DNA polymerase III, delta' subunit	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
SQG01900.1|845815_846133_+	DNA replication intiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
SQG01901.1|846135_847005_+	tetrapyrrole methylase	NA	M1PLC5	Streptococcus_phage	76.1	2.7e-116
SQG01902.1|847231_847750_+	DUF1706 domain-containing protein	NA	NA	NA	NA	NA
SQG01903.1|847858_848506_+	phage protein	NA	A0A2P0VK56	Streptococcus_phage	33.7	7.0e-13
SQG01904.1|848494_848884_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG01905.1|848909_849299_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
SQG01906.1|849792_851127_+|tRNA	tRNA (uracil-5-)-methyltransferase Gid	tRNA	NA	NA	NA	NA
SQG01907.1|851210_851948_+	uridylate kinase	NA	NA	NA	NA	NA
SQG01908.1|851956_852514_+	ribosome-recycling factor	NA	NA	NA	NA	NA
SQG01909.1|852573_853428_+	s1 RNA binding domain protein	NA	NA	NA	NA	NA
SQG01910.1|853436_853652_+	serine-type D-Ala-D-Ala carboxypeptidase	NA	NA	NA	NA	NA
SQG01911.1|853737_854706_+	PhoH family protein	NA	W8D063	Erwinia_phage	47.9	5.9e-48
SQG01912.1|854898_855399_+	acetyltransferase	NA	NA	NA	NA	NA
SQG01913.1|855401_855629_+	TfoX N- domain family protein	NA	NA	NA	NA	NA
SQG01914.1|856028_856304_-	alanine dehydrogenase	NA	NA	NA	NA	NA
SQG01915.1|856714_857140_-	alanine dehydrogenase	NA	NA	NA	NA	NA
SQG01916.1|857316_857886_+	acetyltransferase	NA	NA	NA	NA	NA
SQG01917.1|857953_858604_+	competence protein	NA	NA	NA	NA	NA
SQG01918.1|858587_860828_+	competence protein CelB	NA	M1PSD2	Streptococcus_phage	51.6	2.8e-45
SQG01919.1|861226_861703_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	1.2e-09
SQG01920.1|861817_862999_+	ABC-type transport system involved in multi-copper enzyme maturation, permease component	NA	NA	NA	NA	NA
SQG01921.1|863868_864069_+	LSU ribosomal protein L35p	NA	NA	NA	NA	NA
SQG01922.1|864120_864480_+	LSU ribosomal protein L20p	NA	NA	NA	NA	NA
SQG01923.1|864537_864918_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
SQG01924.1|865167_865968_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
SQG01925.1|865978_866917_+	dihydroorotate dehydrogenase 1B	NA	NA	NA	NA	NA
SQG01926.1|867015_869124_+	putative endo-beta-N-acetylglucosaminidase	NA	A0A143FPM9	Bacillus_phage	42.6	9.0e-25
SQG01927.1|869184_870840_-	fibronectin/fibrinogen binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	36.5	4.7e-05
SQG01928.1|870944_871442_+|protease	putative metalloprotease	protease	NA	NA	NA	NA
>prophage 9
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	894547	966389	2046573	protease,transposase	Streptococcus_phage(46.15%)	55	NA	NA
SQG01955.1|894547_894913_+|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
SQG01956.1|895614_896019_+	surface anchored protein	NA	NA	NA	NA	NA
SQG01957.1|896249_896957_+	cytochrome c-type biogenesis protein CcdA	NA	NA	NA	NA	NA
SQG01958.1|896967_897525_+	thioredoxin	NA	NA	NA	NA	NA
SQG01959.1|897898_899290_+	amino acid permease family protein	NA	NA	NA	NA	NA
SQG01960.1|899432_900350_+	adhesion lipoprotein	NA	NA	NA	NA	NA
SQG01961.1|900357_902850_+	pneumococcal histidine triad protein D	NA	NA	NA	NA	NA
SQG01962.1|903271_903424_+	sugar phosphotransferase system (PTS), fructose family, IIA component	NA	NA	NA	NA	NA
SQG01963.1|903493_903652_+	sugar phosphotransferase system (PTS), fructose family, IIA component	NA	NA	NA	NA	NA
SQG01964.1|904109_904823_+	HAD superfamily hydrolase	NA	NA	NA	NA	NA
SQG01965.1|904836_905484_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01966.1|905619_906273_+	uracil-DNA glycosylase	NA	A0A286RUF9	Beluga_whale_alphaherpesvirus	38.3	2.8e-33
SQG01967.1|906282_906747_+	Mutator mutT protein	NA	NA	NA	NA	NA
SQG01968.1|906759_908028_+	dihydroorotase	NA	NA	NA	NA	NA
SQG01969.1|908041_908302_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01970.1|908312_909674_+	mate efflux family protein	NA	NA	NA	NA	NA
SQG01971.1|909827_910796_+	acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha	NA	NA	NA	NA	NA
SQG01972.1|910811_911804_+	putative acetoin dehydrogenase	NA	NA	NA	NA	NA
SQG01973.1|912021_913065_+	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
SQG01974.1|913110_914814_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
SQG01975.1|914877_915867_+	lipoate protein ligase A	NA	NA	NA	NA	NA
SQG01976.1|915939_917010_-	tyrosine recombinase	NA	A0A1B1IQT7	uncultured_Mediterranean_phage	29.9	3.1e-05
SQG01977.1|917593_919144_-	voltage-gated chloride channel family protein	NA	NA	NA	NA	NA
SQG01978.1|919159_919939_-	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.6	9.6e-25
SQG01979.1|919925_920777_-	GTP-binding protein	NA	NA	NA	NA	NA
SQG01980.1|921235_927127_-|protease	immunoglobulin A1 protease	protease	NA	NA	NA	NA
SQG01981.1|927335_928514_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG01982.1|928683_932334_-	ATP-dependent exoDNAse subunit beta	NA	G3MA40	Bacillus_virus	25.1	8.8e-20
SQG01983.1|932330_935606_-	exonuclease RexB	NA	NA	NA	NA	NA
SQG01984.1|936130_936481_+|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
SQG01985.1|937461_938766_-	Enolase	NA	W6LP63	Streptococcus_phage	94.2	8.1e-234
SQG01986.1|938929_939376_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQG01987.1|939372_940488_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	51.2	1.9e-74
SQG01988.1|941200_942634_-	glycogen synthase	NA	NA	NA	NA	NA
SQG01989.1|942630_943770_-	glycogen biosynthesis protein	NA	NA	NA	NA	NA
SQG01990.1|943759_944902_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
SQG01991.1|944891_946820_-	1,4-alpha-glucan branching enzyme	NA	NA	NA	NA	NA
SQG01992.1|947284_948709_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQG01993.1|949252_951532_-	pullulanase	NA	NA	NA	NA	NA
SQG01994.1|951643_953602_-	DNA ligase	NA	A0A1W6DX16	Sphingobium_phage	35.9	1.2e-100
SQG01995.1|953694_954873_-	macrolide efflux ABC transporter membrane-spanning permease	NA	NA	NA	NA	NA
SQG01996.1|954952_955816_-	transcriptional regulator MutR	NA	NA	NA	NA	NA
SQG01997.1|955818_957720_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.5	1.5e-50
SQG01998.1|958145_958421_-	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	66.3	9.2e-23
SQG01999.1|958526_959366_-	DegV family protein	NA	NA	NA	NA	NA
SQG02000.1|959507_960356_+	YpjC	NA	M1Q1P6	Streptococcus_phage	46.5	1.4e-64
SQG02001.1|960448_961366_-	bifunctional riboflavin kinase/FMN adenylyltransferase	NA	NA	NA	NA	NA
SQG02002.1|962318_962612_-	LSU ribosomal protein L27p	NA	NA	NA	NA	NA
SQG02003.1|962628_962973_-	ribosomal protein	NA	NA	NA	NA	NA
SQG02004.1|962988_963303_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
SQG02005.1|963484_964177_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQG02006.1|964590_964890_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG02007.1|965071_965590_+|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.1	1.7e-78
SQG02008.1|965586_965874_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	70.6	3.3e-23
SQG02009.1|965870_966389_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	94.3	4.2e-85
>prophage 10
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	1094171	1161652	2046573	bacteriocin,protease,holin,tRNA	Bacillus_phage(20.0%)	60	NA	NA
SQG02138.1|1094171_1094474_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQG02139.1|1094470_1094566_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQG02140.1|1094714_1095593_-|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
SQG02141.1|1095693_1098879_-	membrane protein	NA	NA	NA	NA	NA
SQG02142.1|1098890_1100165_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQG02143.1|1100260_1101376_-	O-acetylhomoserine sulfhydrylase	NA	NA	NA	NA	NA
SQG02144.1|1101397_1101520_-	O-acetylhomoserine sulfhydrylase	NA	NA	NA	NA	NA
SQG02145.1|1101667_1102465_-	formate/nitrate transporter	NA	NA	NA	NA	NA
SQG02146.1|1102708_1103452_-	sortase SrtA	NA	NA	NA	NA	NA
SQG02147.1|1103451_1105920_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.5	2.7e-105
SQG02148.1|1106113_1107100_+	L-lactate dehydrogenase 1	NA	NA	NA	NA	NA
SQG02149.1|1107485_1110740_-	type II restriction endonuclease	NA	NA	NA	NA	NA
SQG02150.1|1110904_1112776_-	type II restriction endonuclease	NA	A0A1V0SF91	Hokovirus	25.1	9.7e-15
SQG02151.1|1112850_1113114_-	cytotoxic translational repressor of toxin-antitoxin stability system	NA	NA	NA	NA	NA
SQG02152.1|1113106_1113349_-	toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein	NA	NA	NA	NA	NA
SQG02153.1|1113439_1114249_-	metallo-beta-lactamase superfamily protein	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
SQG02154.1|1114250_1115600_-	histidine kinase	NA	W8CYF6	Bacillus_phage	34.6	1.8e-34
SQG02155.1|1115592_1116297_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
SQG02156.1|1116351_1117527_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
SQG02157.1|1117855_1119526_-	formate-tetrahydrofolate ligase	NA	NA	NA	NA	NA
SQG02158.1|1119755_1120445_+	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
SQG02159.1|1120456_1121008_+	flavoprotein involved in panthothenate metabolism	NA	A0A068EHP1	Penguinpox_virus	37.6	3.1e-25
SQG02160.1|1120991_1121555_+	membrane protein	NA	NA	NA	NA	NA
SQG02161.1|1121836_1122364_+	membrane protein	NA	NA	NA	NA	NA
SQG02162.1|1122375_1122891_+	transcriptional regulator	NA	NA	NA	NA	NA
SQG02163.1|1122887_1123355_-	MutT/nudix family protein	NA	NA	NA	NA	NA
SQG02164.1|1123428_1123917_-	acetyltransferase, gnat family	NA	NA	NA	NA	NA
SQG02165.1|1123882_1124446_-	acetyltransferase	NA	NA	NA	NA	NA
SQG02166.1|1124455_1126444_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
SQG02167.1|1126520_1127474_-|protease	caax amino protease family protein	protease	NA	NA	NA	NA
SQG02168.1|1127646_1129812_+	glutamine ABC transporter permease	NA	NA	NA	NA	NA
SQG02169.1|1129811_1130552_+	phosphate ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.3	3.7e-18
SQG02170.1|1130700_1132188_+	glucose-6-phosphate 1-dehydrogenase	NA	H6WFS4	Cyanophage	33.0	2.2e-70
SQG02171.1|1132233_1133511_-	cell division protein FtsY	NA	NA	NA	NA	NA
SQG02172.1|1133514_1134333_-	Cof family protein	NA	NA	NA	NA	NA
SQG02173.1|1134332_1135127_-	Cof family protein	NA	NA	NA	NA	NA
SQG02174.1|1135123_1138663_-	chromosome condensation and segregation SMC protein	NA	NA	NA	NA	NA
SQG02175.1|1138653_1139352_-	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	33.8	3.0e-25
SQG02176.1|1139669_1140656_-	GMP reductase	NA	G3MBI2	Bacillus_virus	72.2	2.4e-137
SQG02177.1|1140830_1142174_-	McrBC 5-methylcytosine restriction system component	NA	NA	NA	NA	NA
SQG02178.1|1142133_1144065_-	endonuclease	NA	K4I1H4	Acidithiobacillus_phage	33.7	1.4e-16
SQG02179.1|1144228_1144399_-	translation factor	NA	NA	NA	NA	NA
SQG02180.1|1145014_1145374_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
SQG02181.1|1145377_1145647_-	membrane protein	NA	NA	NA	NA	NA
SQG02182.1|1145643_1146681_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
SQG02183.1|1146692_1147112_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
SQG02184.1|1147154_1147787_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
SQG02185.1|1147805_1148462_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQG02186.1|1148505_1149138_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQG02187.1|1149230_1149590_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
SQG02188.1|1149695_1151783_-	DNA topoisomerase I	NA	A0A1V0SCS0	Indivirus	37.5	1.5e-104
SQG02189.1|1151949_1152993_-	membrane protein	NA	NA	NA	NA	NA
SQG02190.1|1153882_1154731_-	DNA processing protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
SQG02191.1|1154826_1155516_-|holin	CTP:phosphocholine cytidylyltransferase	holin	A0A127AW70	Bacillus_phage	45.0	3.4e-05
SQG02192.1|1155527_1156406_-	drug/metabolite transporter (DMT) superfamily permease	NA	NA	NA	NA	NA
SQG02193.1|1156395_1157265_-|holin	choline kinase	holin	NA	NA	NA	NA
SQG02194.1|1157281_1158304_-	zinc-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
SQG02195.1|1158308_1159016_-	cytidylyltransferase	NA	NA	NA	NA	NA
SQG02196.1|1159351_1160839_+	teichoic acid subunit flippase	NA	NA	NA	NA	NA
SQG02197.1|1160848_1161652_+|holin	phosphorylcholine transferase LicD1	holin	A0A1V0SD50	Indivirus	27.1	5.3e-10
>prophage 11
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	1186506	1231450	2046573	bacteriocin,protease,transposase,holin	Bacillus_phage(62.5%)	47	NA	NA
SQG02225.1|1186506_1186773_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQG02226.1|1187460_1188807_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
SQG02227.1|1189302_1189473_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQG02228.1|1189485_1190127_-	multidrug resistance protein 1 (ATP-binding cassettesub-family B member 1) (P-glycoprotein 1)(antigen)	NA	W8CYL7	Bacillus_phage	40.1	1.7e-19
SQG02229.1|1190398_1190836_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG02230.1|1191126_1191330_-	glucokinase	NA	NA	NA	NA	NA
SQG02231.1|1191347_1192061_-	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
SQG02232.1|1192169_1192265_-	N-acetylneuraminate lyase subunit, truncation	NA	NA	NA	NA	NA
SQG02233.1|1192296_1192704_-	cytidine deaminase	NA	NA	NA	NA	NA
SQG02234.1|1192991_1193480_-	phosphatidylglycerophosphatase A	NA	G3MBC5	Bacillus_virus	53.3	4.9e-35
SQG02235.1|1193484_1194894_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02236.1|1194903_1196886_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.2	3.1e-19
SQG02237.1|1196898_1197750_-	oligopeptide ABC transporter pemease protein	NA	NA	NA	NA	NA
SQG02238.1|1197766_1198717_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
SQG02239.1|1198826_1200455_-	oligopeptide ABC transporteroligopeptide-binding protein	NA	NA	NA	NA	NA
SQG02240.1|1200536_1201460_-	N-acetylneuraminate epimerase precursor	NA	NA	NA	NA	NA
SQG02241.1|1201483_1202182_-	N-acetylmannosamine-6-phosphate 2-epimerase 2 (ManNAc-6-P epimerase 2)	NA	NA	NA	NA	NA
SQG02242.1|1202228_1202492_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
SQG02243.1|1203074_1203296_-|bacteriocin	Tn5253 bacteriocine putative	bacteriocin	NA	NA	NA	NA
SQG02244.1|1204089_1204227_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02245.1|1204359_1205679_-	permease	NA	NA	NA	NA	NA
SQG02246.1|1205681_1206422_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.8	7.0e-09
SQG02247.1|1206436_1208044_-	drug efflux ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	22.4	6.0e-13
SQG02248.1|1208040_1209981_-	prolyl oligopeptidase family protein	NA	NA	NA	NA	NA
SQG02249.1|1210013_1212623_-	lantibiotic synthetase	NA	NA	NA	NA	NA
SQG02250.1|1212801_1212939_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02251.1|1213140_1213728_-|protease	Tn5253 CAAX amino terminal protease family	protease	NA	NA	NA	NA
SQG02252.1|1213820_1213964_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02253.1|1213976_1214357_-	arsenate reductase-like glutaredoxin family protein	NA	NA	NA	NA	NA
SQG02254.1|1214411_1214690_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02255.1|1214697_1214952_-	replication initiator protein	NA	A0A286QNA4	Streptococcus_phage	36.8	6.5e-07
SQG02256.1|1214948_1215122_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02257.1|1215309_1215678_-	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
SQG02258.1|1215753_1216254_-	50S ribosomal protein L10	NA	NA	NA	NA	NA
SQG02259.1|1216503_1217970_-	chlorohydrolase	NA	NA	NA	NA	NA
SQG02260.1|1218064_1219816_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	29.9	1.6e-48
SQG02261.1|1219817_1221542_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	2.1e-43
SQG02262.1|1221599_1222538_-	bifunctional methionine sulfoxide reductase	NA	NA	NA	NA	NA
SQG02263.1|1222566_1222818_-	chlorohydrolase	NA	NA	NA	NA	NA
SQG02264.1|1222833_1223703_-	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
SQG02265.1|1223704_1224991_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
SQG02266.1|1225141_1225879_-	adaptor protein	NA	NA	NA	NA	NA
SQG02267.1|1226020_1227055_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02268.1|1227083_1228517_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02269.1|1228532_1229519_-	glycosyl transferase	NA	NA	NA	NA	NA
SQG02270.1|1229520_1230624_-	glycosyl transferase	NA	NA	NA	NA	NA
SQG02271.1|1230613_1231450_-|holin	phosphorylcholine transferase LicD3	holin	NA	NA	NA	NA
>prophage 12
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	1299118	1333914	2046573	transposase,tRNA	Streptococcus_phage(20.0%)	42	NA	NA
SQG02339.1|1299118_1299424_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG02340.1|1299774_1300125_-|transposase	transposase, ISSmi4	transposase	NA	NA	NA	NA
SQG02341.1|1300105_1300291_-	IS66 family Orf1	NA	NA	NA	NA	NA
SQG02342.1|1300594_1302157_-	GMP synthase	NA	A0A1V0SH76	Hokovirus	32.8	1.4e-19
SQG02343.1|1302298_1302997_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQG02344.1|1303039_1303936_-	membrane protein	NA	NA	NA	NA	NA
SQG02345.1|1303944_1304883_-	beta-lactamase	NA	NA	NA	NA	NA
SQG02346.1|1304879_1305605_-	cppA protein	NA	NA	NA	NA	NA
SQG02347.1|1305688_1306324_-	lysophospholipase l1-like esterase	NA	A0A2K9L661	Tupanvirus	28.7	8.7e-08
SQG02348.1|1306325_1307153_-	hydrolase	NA	NA	NA	NA	NA
SQG02349.1|1307174_1307510_-	poly-gamma-glutamate biosynthesis protein	NA	NA	NA	NA	NA
SQG02350.1|1307510_1308023_-	enzyme of poly-gamma-glutamate biosynthesis	NA	A0A0N9SJ77	Staphylococcus_phage	32.4	1.4e-16
SQG02351.1|1308751_1309363_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
SQG02352.1|1309407_1310136_+	TrmH family RNA methyltransferase group 3	NA	NA	NA	NA	NA
SQG02353.1|1310174_1311086_-	thioredoxin reductase	NA	G3MA85	Bacillus_virus	51.8	4.5e-90
SQG02354.1|1311151_1311376_-	membrane associated protein	NA	NA	NA	NA	NA
SQG02355.1|1311453_1312197_-	aspartate/glutamate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
SQG02356.1|1312196_1312997_-	aspartate/glutamate ABC transporter permease	NA	NA	NA	NA	NA
SQG02357.1|1313154_1313511_-	ArsC family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
SQG02358.1|1313504_1314035_-	O6-methylguanine-DNA methyltransferase	NA	M1PFU9	Streptococcus_phage	54.3	1.4e-46
SQG02359.1|1314034_1314529_-	acetyltransferase, GNAT family protein	NA	M1PSC3	Streptococcus_phage	51.5	5.5e-42
SQG02360.1|1314663_1315110_+	BS_ykrK family protein	NA	NA	NA	NA	NA
SQG02361.1|1315106_1315754_+	hlyIII superfamily protein	NA	NA	NA	NA	NA
SQG02362.1|1315774_1316356_-	glutamine amidotransferase subunit PdxT	NA	NA	NA	NA	NA
SQG02363.1|1316356_1317232_-	pyridoxal biosynthesis lyase PdxS	NA	NA	NA	NA	NA
SQG02364.1|1317383_1318763_-	NADH oxidase	NA	NA	NA	NA	NA
SQG02365.1|1319056_1319980_+	thiamine biosynthesis lipoprotein	NA	NA	NA	NA	NA
SQG02366.1|1320039_1320645_+	NADPH-dependent FMN reductase domain-containing protein	NA	A0A2P0ZL77	Lactobacillus_phage	54.2	5.9e-54
SQG02367.1|1320662_1321907_+	flavin reductase	NA	A0A2P0ZL82	Lactobacillus_phage	52.7	3.8e-55
SQG02368.1|1322023_1322281_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQG02369.1|1322322_1324359_-|tRNA	glycyl-tRNA synthetase beta subunit	tRNA	NA	NA	NA	NA
SQG02370.1|1324618_1325536_-|tRNA	glycyl-tRNA synthetase alpha subunit	tRNA	NA	NA	NA	NA
SQG02371.1|1325729_1326119_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02372.1|1326100_1326490_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02373.1|1326762_1327605_-	2,5-diketo-D-gluconic acid reductase A	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.3e-51
SQG02374.1|1327718_1329161_-	peptidoglycan N-acetylglucosamine deacetylase A	NA	NA	NA	NA	NA
SQG02375.1|1329936_1330914_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
SQG02376.1|1330910_1331993_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.3	1.8e-37
SQG02377.1|1332151_1332565_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQG02378.1|1332643_1333132_-|transposase	IS3-Spn1 transposase, truncation	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	50.9	2.8e-38
SQG02379.1|1333107_1333476_-|transposase	degenerate transposase (Orf2)	transposase	A0A1B1P773	Bacillus_phage	53.6	1.2e-12
SQG02380.1|1333701_1333914_-|transposase	transposase orfA, ISSmu1	transposase	NA	NA	NA	NA
>prophage 13
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	1414602	1421356	2046573	protease	Streptococcus_phage(50.0%)	9	NA	NA
SQG02457.1|1414602_1415571_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	99.2	1.1e-65
SQG02458.1|1415604_1416516_-	putative sporulation transcription regulator whiA	NA	Q7AWZ3	Streptococcus_phage	99.7	1.5e-154
SQG02459.1|1416512_1417490_-	transporter	NA	A1IMD5	Streptococcus_phage	99.7	4.4e-184
SQG02460.1|1417486_1418377_-	P-loop-containing kinase	NA	A0A0R8VB27	Thermobifida_phage	29.8	6.7e-06
SQG02461.1|1418428_1418809_-	endoribonuclease L-PSP	NA	NA	NA	NA	NA
SQG02462.1|1418819_1419407_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQG02463.1|1419415_1420648_-|protease	ATP-dependent Clp protease, ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
SQG02464.1|1420679_1420850_-	membrane associated protein	NA	NA	NA	NA	NA
SQG02465.1|1420849_1421356_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	43.8	1.0e-27
>prophage 14
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	1655544	1679882	2046573	transposase,holin,integrase	Streptococcus_phage(33.33%)	28	1663527:1663543	1672752:1672768
SQG02700.1|1655544_1656063_+|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	93.0	7.0e-80
SQG02701.1|1656059_1656347_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	70.6	4.3e-23
SQG02702.1|1656343_1656862_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	94.3	4.2e-85
SQG02703.1|1656970_1658491_-|holin	choline transporter	holin	NA	NA	NA	NA
SQG02704.1|1658483_1659212_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.7	2.3e-28
SQG02705.1|1659226_1659991_-	lipoprotein	NA	NA	NA	NA	NA
SQG02706.1|1659994_1660438_-	transcriptional regulator, MarR family	NA	NA	NA	NA	NA
SQG02707.1|1661119_1661416_-	Enterocin A Immunity	NA	NA	NA	NA	NA
SQG02708.1|1661437_1662502_-	glutamyl aminopeptidase	NA	NA	NA	NA	NA
SQG02709.1|1662902_1663604_+	putative UDP-glucose 4-epimerase	NA	A0A2K9L1R4	Tupanvirus	35.7	4.6e-34
1663527:1663543	attL	AAAATATTTGGAGATGA	NA	NA	NA	NA
SQG02710.1|1664026_1664986_+	iron-compound ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	4.0e-57
SQG02711.1|1664975_1665932_+	ferric iron ABC transporter membrane-spanning permease	NA	NA	NA	NA	NA
SQG02712.1|1665928_1666681_+	ferrichrome transport ATP-binding protein FhuC	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.2	3.7e-13
SQG02713.1|1666776_1667742_+	iron-compound ABC transporter iron-compound-binding protein	NA	NA	NA	NA	NA
SQG02714.1|1667966_1668209_-	alpha-hemolysin family protein	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	7.8e-18
SQG02715.1|1668208_1668931_-	ribosomal large subunit pseudouridine synthase B	NA	NA	NA	NA	NA
SQG02716.1|1668917_1669487_-	segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
SQG02717.1|1669505_1670234_-	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
SQG02718.1|1670233_1670968_-|integrase	integrase	integrase	NA	NA	NA	NA
SQG02719.1|1670964_1671426_-	CBS domain-containing protein	NA	NA	NA	NA	NA
SQG02720.1|1671422_1671944_-	phosphodiesterase, family	NA	NA	NA	NA	NA
SQG02721.1|1671919_1672891_-	deoxyribonucleotide triphosphate pyrophosphatase/uncharacterised domain fusion protein	NA	C4N227	Ugandan_cassava_brown_streak_virus	29.9	4.9e-10
1672752:1672768	attR	TCATCTCCAAATATTTT	NA	NA	NA	NA
SQG02722.1|1672887_1673682_-	glutamate racemase, COG0796	NA	NA	NA	NA	NA
SQG02723.1|1673888_1674137_-	family protein	NA	NA	NA	NA	NA
SQG02724.1|1674278_1675904_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
SQG02725.1|1676081_1678049_-	trehalose PTS system, IIABC components	NA	NA	NA	NA	NA
SQG02726.1|1678233_1678944_+	trehalose operon repressor	NA	NA	NA	NA	NA
SQG02727.1|1679099_1679882_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	84.8	1.4e-116
>prophage 15
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	1698127	1750197	2046573	bacteriocin,protease,transposase,tRNA	Streptococcus_phage(45.45%)	52	NA	NA
SQG02742.1|1698127_1698565_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.2	1.9e-22
SQG02743.1|1705552_1706908_-	RNA methyltransferase	NA	E4ZFI6	Streptococcus_phage	33.7	5.3e-71
SQG02744.1|1706945_1707722_+	regulatory protein RecX	NA	NA	NA	NA	NA
SQG02745.1|1707810_1708344_+	UPF0374 protein SSU05	NA	NA	NA	NA	NA
SQG02746.1|1708697_1708904_-	putative transcriptional regulator	NA	NA	NA	NA	NA
SQG02747.1|1709063_1710293_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.6	1.7e-217
SQG02748.1|1710391_1712014_-	chaperone GroEL	NA	A0A219YK78	uncultured_virus	56.1	2.3e-153
SQG02749.1|1712029_1712314_-	CH10_SMI 10 kDa chaperonin (protein Cpn10)	NA	NA	NA	NA	NA
SQG02750.1|1712469_1712865_-	single-strand DNA-binding protein B	NA	A1EAD1	Streptococcus_phage	45.5	3.0e-27
SQG02751.1|1712942_1713704_-	3-oxoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	24.1	6.3e-05
SQG02752.1|1713736_1714363_-|tRNA	phenylalanyl-tRNA synthetase, beta subunit	tRNA	NA	NA	NA	NA
SQG02753.1|1714378_1714696_-	thioredoxin family protein	NA	NA	NA	NA	NA
SQG02754.1|1714692_1714992_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02755.1|1715680_1716355_-	putative uncharacterized conserved secreted protein	NA	NA	NA	NA	NA
SQG02756.1|1716360_1716807_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG02757.1|1716920_1717424_-	membrane-associated phospholipid phosphatase	NA	NA	NA	NA	NA
SQG02758.1|1717420_1717783_-	Lin0147	NA	NA	NA	NA	NA
SQG02759.1|1717848_1718880_-	multidrug resistance protein 3	NA	W8CYL7	Bacillus_phage	28.5	4.9e-16
SQG02760.1|1718886_1719057_-	ABC transporter permease	NA	NA	NA	NA	NA
SQG02761.1|1719060_1719708_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQG02762.1|1719849_1720194_-	transcriptional regulator, MarR family	NA	NA	NA	NA	NA
SQG02763.1|1720317_1721034_-	glucose-1-phosphate adenylyl transferase	NA	NA	NA	NA	NA
SQG02764.1|1721914_1723330_-	pneumolysin	NA	NA	NA	NA	NA
SQG02765.1|1723340_1723751_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02766.1|1723743_1724352_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02767.1|1724364_1724823_-	membrane protein	NA	NA	NA	NA	NA
SQG02768.1|1724947_1725079_+	mobile genetic element	NA	NA	NA	NA	NA
SQG02769.1|1726111_1726372_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02770.1|1726430_1726982_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02771.1|1726971_1727169_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02772.1|1727172_1727967_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02773.1|1728374_1728800_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02774.1|1728928_1729288_-	zinc metallopeptidase	NA	NA	NA	NA	NA
SQG02775.1|1729333_1729540_-	zinc metallopeptidase	NA	NA	NA	NA	NA
SQG02776.1|1730058_1731015_-	autolysin	NA	A0A1S5SE15	Streptococcus_phage	95.6	6.0e-154
SQG02777.1|1731390_1732761_-	damage inducible DinF protein	NA	NA	NA	NA	NA
SQG02778.1|1733067_1734234_-	protein RecA	NA	A0A0S2MVG1	Bacillus_phage	61.7	5.9e-119
SQG02779.1|1734288_1735545_-	damage inducible protein CinA	NA	NA	NA	NA	NA
SQG02780.1|1735629_1736646_-	regulator of lytrabc operon	NA	NA	NA	NA	NA
SQG02781.1|1736653_1737172_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQG02782.1|1737161_1737605_-	putative ATPase	NA	NA	NA	NA	NA
SQG02783.1|1737690_1738311_-	lipoprotein, putative	NA	NA	NA	NA	NA
SQG02784.1|1738693_1739557_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG02785.1|1739748_1739919_+	secreted protein	NA	NA	NA	NA	NA
SQG02786.1|1740021_1740246_+	type 2 lantibiotic, SP_1948 family	NA	NA	NA	NA	NA
SQG02787.1|1740252_1740441_+	type 2 lantibiotic, SP_1948 family	NA	NA	NA	NA	NA
SQG02788.1|1740556_1743547_+	lantibiotic modifying enzyme	NA	NA	NA	NA	NA
SQG02789.1|1743896_1744601_+	putative reductase	NA	NA	NA	NA	NA
SQG02790.1|1744581_1745511_+|protease	Zn-dependent proteases	protease	NA	NA	NA	NA
SQG02791.1|1745507_1747616_+|bacteriocin	bacteriocin secretion/processing ATP-binding protein	bacteriocin	W8CYL7	Bacillus_phage	27.7	2.2e-23
SQG02792.1|1747639_1749379_+|protease	lantibiotic leader peptide processing serine protease	protease	A0A2H4PQH1	Staphylococcus_phage	39.5	4.2e-52
SQG02793.1|1749441_1750197_+|bacteriocin	bacteriocin-associated integral membrane protein	bacteriocin	NA	NA	NA	NA
>prophage 16
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	1877040	1937156	2046573	protease,transposase,holin,tRNA	Bacillus_phage(27.27%)	60	NA	NA
SQG02911.1|1877040_1878732_+|tRNA	arginyl-tRNA synthetase(arginine--tRNA ligase) (ARGRS)	tRNA	A0A2I2L3K1	Orpheovirus	32.3	1.6e-80
SQG02912.1|1879046_1879436_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG02913.1|1879599_1880076_+	Uncharacterized conserved protein	NA	A0A291ATU0	Pandoravirus	34.6	1.0e-16
SQG02914.1|1880159_1880867_+	response regulator	NA	W8CYM9	Bacillus_phage	39.6	1.4e-38
SQG02915.1|1880867_1882199_+	histidine kinase PnpS	NA	W8CYF6	Bacillus_phage	34.9	1.9e-33
SQG02916.1|1882365_1883241_+	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQG02917.1|1883358_1884222_+	phosphate ABC transporter permeae PstC	NA	NA	NA	NA	NA
SQG02918.1|1884214_1885030_+	phosphate ABC transporter	NA	NA	NA	NA	NA
SQG02919.1|1885031_1885784_+	phosphate transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	27.4	3.9e-15
SQG02920.1|1885798_1886449_+	phosphate transport system regulatory protein PhoU	NA	NA	NA	NA	NA
SQG02921.1|1886516_1886933_+|transposase	transposase, IS1380-Spn1 related, truncation	transposase	NA	NA	NA	NA
SQG02922.1|1887055_1887538_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG02923.1|1887707_1888724_+	glycerol-3-phosphate dehydrogenase (NAD(P)+)	NA	NA	NA	NA	NA
SQG02924.1|1888745_1889645_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	50.3	3.1e-75
SQG02925.1|1889711_1890389_-	peptidase, S54	NA	NA	NA	NA	NA
SQG02926.1|1890372_1890912_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
SQG02927.1|1890923_1892054_-	GlpG protein (membrane protein of glp regulon)	NA	NA	NA	NA	NA
SQG02928.1|1892121_1892820_-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	NA	NA	NA	NA	NA
SQG02929.1|1893049_1893961_-	drug/metabolite transporter (DMT) superfamily permease	NA	NA	NA	NA	NA
SQG02930.1|1894025_1896491_-	penicillin-binding protein 1B	NA	NA	NA	NA	NA
SQG02931.1|1896632_1897889_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A2C9CYK4	Yersinia_phage	41.5	1.5e-75
SQG02932.1|1897966_1900030_-	P-type ATPase-metal/cation transporter	NA	E4ZFI9	Streptococcus_phage	26.0	2.2e-52
SQG02933.1|1900031_1900310_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02934.1|1900461_1901310_+	23S_rRNA m1G745 methyltransferase	NA	NA	NA	NA	NA
SQG02935.1|1902108_1902681_+	membrane protein	NA	NA	NA	NA	NA
SQG02936.1|1903221_1903368_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02937.1|1903725_1905984_-	maltodextrin phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	37.5	5.7e-09
SQG02938.1|1906009_1907527_-	4-alpha-glucanotransferase (amylomaltase)	NA	NA	NA	NA	NA
SQG02939.1|1908076_1909348_+	maltose/maltodextrin ABC transporter maltose /maltodextrin-binding protein	NA	NA	NA	NA	NA
SQG02940.1|1909458_1910751_+	maltodextrin ABC transporter permease	NA	NA	NA	NA	NA
SQG02941.1|1910752_1911595_+	maltodextrin ABC transporter permease	NA	NA	NA	NA	NA
SQG02942.1|1911847_1912648_+	malA-protein	NA	NA	NA	NA	NA
SQG02943.1|1912657_1913644_+	maltose operon transcriptional repressor	NA	NA	NA	NA	NA
SQG02944.1|1913935_1914877_-	YitT family protein	NA	NA	NA	NA	NA
SQG02945.1|1914854_1916618_-|tRNA	aspartyl-tRNA synthetase (aspartate-tRNA ligase)	tRNA	A0A1V0SJ84	Klosneuvirus	26.4	5.0e-13
SQG02946.1|1916736_1916928_-	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
SQG02947.1|1916969_1917200_-	excreted peptide	NA	NA	NA	NA	NA
SQG02948.1|1917217_1917859_-|protease	caax amino protease family protein	protease	NA	NA	NA	NA
SQG02949.1|1917870_1918605_-	brp/Blh family beta-carotene 15,15'-monooxygenase	NA	NA	NA	NA	NA
SQG02950.1|1918607_1918805_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02951.1|1918804_1919020_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG02952.1|1919020_1919335_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02953.1|1919484_1919664_-	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
SQG02954.1|1919660_1920950_-|tRNA	histidyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQG02955.1|1921027_1922275_-	major facilitator superfamily permease	NA	NA	NA	NA	NA
SQG02956.1|1922464_1923316_-	transcriptional activator, Rgg/GadR/MutR family protein	NA	NA	NA	NA	NA
SQG02957.1|1923439_1923781_+	domain of uncharacterised function protein	NA	NA	NA	NA	NA
SQG02958.1|1923989_1925693_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
SQG02959.1|1925925_1926855_-	transketolase c-terminal section	NA	NA	NA	NA	NA
SQG02960.1|1926854_1927712_-	transketolase n-terminal section	NA	A0A2K9L6P9	Tupanvirus	31.2	5.4e-29
SQG02961.1|1927715_1929062_-	PTS system, IIC component	NA	NA	NA	NA	NA
SQG02962.1|1929074_1929359_-	PTS system, IIB component	NA	NA	NA	NA	NA
SQG02963.1|1929362_1931393_-	transcriptional regulator, BglG family	NA	NA	NA	NA	NA
SQG02964.1|1931583_1932591_+	integral membrane protein	NA	NA	NA	NA	NA
SQG02965.1|1932593_1932794_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG02966.1|1932945_1933128_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
SQG02967.1|1933143_1933293_+	LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent	NA	NA	NA	NA	NA
SQG02968.1|1933772_1935815_-|holin	choline binding protein PcpA	holin	NA	NA	NA	NA
SQG02969.1|1936171_1936741_+|transposase	IS1381, transposase OrfA	transposase	NA	NA	NA	NA
SQG02970.1|1936766_1937156_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 17
LS483374	Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1	2046573	1995501	2032984	2046573	protease,transposase,holin	Streptococcus_phage(50.0%)	36	NA	NA
SQG03016.1|1995501_1997607_-|holin	choline binding protein A	holin	NA	NA	NA	NA
SQG03017.1|1997685_1998213_-	membrane protein	NA	NA	NA	NA	NA
SQG03018.1|1998295_1999627_-	signal transduction histidine kinase	NA	NA	NA	NA	NA
SQG03019.1|1999623_2000277_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SQG03020.1|2000918_2003351_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	40.4	4.2e-127
SQG03021.1|2003352_2003811_-	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
SQG03022.1|2003929_2004658_-	nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.2	1.0e-28
SQG03023.1|2004657_2005665_-	ABC transportersubstrate-binding protein, nitrate/sulfonate/bicarbonate transport	NA	NA	NA	NA	NA
SQG03024.1|2005702_2006461_-	ABC transporter permease, nitrate/sulfonate/bicarbonate transport	NA	NA	NA	NA	NA
SQG03025.1|2006423_2006714_-	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQG03026.1|2006969_2008316_-|holin	choline binding protein D	holin	NA	NA	NA	NA
SQG03027.1|2008404_2008671_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQG03028.1|2008672_2010025_-	DNA replication protein DnaC	NA	A0A1P8VVQ6	Streptococcus_phage	61.3	6.3e-149
SQG03029.1|2010068_2010521_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
SQG03030.1|2010517_2012491_-	DHH family protein	NA	NA	NA	NA	NA
SQG03031.1|2012626_2013175_-	ribosome-associated protein	NA	NA	NA	NA	NA
SQG03032.1|2013254_2013917_-	involved in transformation	NA	NA	NA	NA	NA
SQG03033.1|2013913_2015212_-	helicase ComFA	NA	A0A1X9I5S6	Streptococcus_phage	66.6	9.3e-166
SQG03034.1|2015267_2015903_+	Xaa-Pro dipeptidase	NA	A0A1X9I5T8	Streptococcus_phage	71.5	4.4e-76
SQG03035.1|2016187_2017108_+	cysteine synthase	NA	A0A1X9I5K7	Streptococcus_phage	80.7	1.3e-137
SQG03036.1|2018158_2018446_-|transposase	transposase, ISSmi4	transposase	NA	NA	NA	NA
SQG03037.1|2018691_2019732_-	elongation factor Ts	NA	NA	NA	NA	NA
SQG03038.1|2019797_2020577_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
SQG03039.1|2020800_2021979_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
SQG03040.1|2022072_2022567_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
SQG03041.1|2022566_2023385_-	cell shape determining protein MreC	NA	NA	NA	NA	NA
SQG03042.1|2023443_2024238_-	ABC transporter permease, cobalt transport	NA	NA	NA	NA	NA
SQG03043.1|2024230_2025070_-	cobalt ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.6	1.5e-15
SQG03044.1|2025054_2025882_-	ABCtransporter ATP-binding protein cobalt transport	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
SQG03045.1|2025878_2026424_-	phosphatidylglycerophosphate synthase	NA	NA	NA	NA	NA
SQG03046.1|2026434_2027256_-	transcriptional regulation protein	NA	NA	NA	NA	NA
SQG03047.1|2027297_2028581_-|protease	zinc-dependent protease	protease	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	1.1e-17
SQG03048.1|2028577_2029828_-|protease	zinc-dependent protease	protease	A0A1X9I714	Streptococcus_phage	42.3	3.5e-93
SQG03049.1|2029986_2030355_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
SQG03050.1|2030357_2031455_+	recombination protein recF	NA	NA	NA	NA	NA
SQG03051.1|2031505_2032984_-	inosine-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
