The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	4481118	7438	58061	4481118	transposase,protease	Bacillus_phage(18.18%)	49	NA	NA
SQG08579.1|7438_8284_+|protease	transmembrane protease	protease	NA	NA	NA	NA
SQG08580.1|8355_9162_+|protease	Zn-dependent protease with chaperone function	protease	NA	NA	NA	NA
SQG08581.1|9294_10482_+	TPR domain-containing protein	NA	NA	NA	NA	NA
SQG08582.1|10625_11294_+	TonB family protein	NA	NA	NA	NA	NA
SQG08583.1|11388_12150_+	motA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
SQG08584.1|12212_12638_+	biopolymer transport protein ExbD/TolR	NA	NA	NA	NA	NA
SQG08585.1|12641_13055_+	biopolymer transport protein ExbD/TolR	NA	NA	NA	NA	NA
SQG08586.1|13123_14617_+	phospholipase D/transphosphatidylase	NA	NA	NA	NA	NA
SQG08587.1|14657_14927_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG08588.1|14936_15680_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
SQG08589.1|15781_16873_+	radical SAM protein	NA	NA	NA	NA	NA
SQG08590.1|17012_17621_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG08591.1|17705_18239_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG08592.1|18590_18773_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG08593.1|19993_20704_-	Uncharacterised protein	NA	V5UTP7	Synechococcus_phage	46.4	1.7e-15
SQG08594.1|20812_21829_-	Fructose-1,6-bisphosphatase, type I	NA	A0A1V0SKX4	Klosneuvirus	36.1	2.4e-47
SQG08595.1|21956_22124_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG08596.1|22243_23446_-	aromatic-amino-acid aminotransferase	NA	NA	NA	NA	NA
SQG08597.1|23617_25711_+	tonB-dependent receptor yncD precursor	NA	A0A1B0VCF0	Salmonella_phage	41.0	8.8e-73
SQG08598.1|25867_26206_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG08599.1|26354_26753_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG08600.1|26917_27838_+	Ku domain-containing protein	NA	NA	NA	NA	NA
SQG08601.1|27841_30328_+	ATP-dependent DNA ligase	NA	A0A068CDF3	Rhizobium_phage	38.4	1.6e-49
SQG08602.1|30399_30792_-	transmembrane protein	NA	NA	NA	NA	NA
SQG08603.1|30959_31988_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	29.2	4.4e-33
SQG08604.1|32084_32723_-	4-hydroxy-2-ketovalerate aldolase	NA	NA	NA	NA	NA
SQG08605.1|32836_33493_-	cysteine dioxygenase type I	NA	NA	NA	NA	NA
SQG08606.1|33680_34721_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	26.1	9.5e-28
SQG08607.1|34831_35725_-	phenylalanine-4-hydroxylase	NA	NA	NA	NA	NA
SQG08608.1|35850_36336_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
SQG08609.1|36375_37368_-|protease	Serine protease	protease	A0A1X7QFZ0	Faustovirus	25.9	2.8e-05
SQG08610.1|37801_38818_-	Protein of uncharacterised function DUF124	NA	NA	NA	NA	NA
SQG08611.1|38975_41246_+	TonB-dependent receptor	NA	NA	NA	NA	NA
SQG08612.1|41358_42198_-	Nonspecific acid phosphatase precursor	NA	NA	NA	NA	NA
SQG08613.1|42460_43339_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG08614.1|43350_44553_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG08615.1|44704_45649_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG08616.1|45868_46699_-	ABC transporter-like protein	NA	NA	NA	NA	NA
SQG08617.1|46789_47668_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG08618.1|47884_49087_+	fatty acid desaturase	NA	NA	NA	NA	NA
SQG08619.1|49083_49416_+	calcium-binding protein	NA	NA	NA	NA	NA
SQG08620.1|49435_50248_+	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.2	1.3e-16
SQG08621.1|50449_51958_+	glucans biosynthesis protein D precursor	NA	NA	NA	NA	NA
SQG08622.1|52509_53130_-	thymidine kinase	NA	A0A289ZTU3	Serratia_phage	52.4	1.3e-51
SQG08623.1|53139_53871_-	Sel1 domain-containing protein repeat-containing protein	NA	NA	NA	NA	NA
SQG08624.1|53910_54639_-	Sel1 domain-containing protein repeat-containing protein	NA	NA	NA	NA	NA
SQG08625.1|54687_56715_+	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	38.1	3.8e-113
SQG08626.1|56910_57204_+|transposase	ISXac3 like transposase	transposase	NA	NA	NA	NA
SQG08627.1|57458_58061_+|transposase	transposase	transposase	U5P429	Shigella_phage	44.9	1.5e-33
>prophage 2
LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	4481118	578454	587008	4481118		Escherichia_phage(25.0%)	8	NA	NA
SQG09090.1|578454_579513_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.7	6.6e-77
SQG09091.1|579527_580415_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	58.2	1.6e-95
SQG09092.1|580411_580969_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	49.4	3.0e-44
SQG09093.1|580965_581883_+	dTDP-4-dehydrorhamnose reductase	NA	A0A1D7XFA3	Escherichia_phage	36.9	4.9e-28
SQG09094.1|581947_582934_-	Uncharacterized protein conserved in bacteria	NA	A0A2H4JA46	uncultured_Caudovirales_phage	29.8	4.8e-21
SQG09095.1|583056_584460_-	mannose-1-phosphate guanylyltransferase	NA	A0A1V0SH58	Hokovirus	27.5	2.9e-40
SQG09096.1|584471_585818_-	phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	26.7	5.9e-30
SQG09097.1|585946_587008_+	NAD-dependent epimerase/dehydratase	NA	A0A2K9KZK0	Tupanvirus	48.1	7.5e-89
>prophage 3
LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	4481118	952297	1033106	4481118	tail,transposase,plate,integrase,protease	Escherichia_phage(18.52%)	76	981696:981714	1040256:1040274
SQG09419.1|952297_952924_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.4	7.7e-57
SQG09420.1|953050_954340_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.0	2.9e-135
SQG09421.1|954483_956931_+	anti-sigma H sporulation factor LonB	NA	A0A0R6PGP8	Moraxella_phage	51.9	1.9e-220
SQG09422.1|957148_957421_+	DNA-binding protein HU-alpha	NA	A7KV42	Bacillus_phage	62.9	4.5e-22
SQG09423.1|958262_960218_+	peptidyl-prolyl cis-trans isomerase ppiD	NA	NA	NA	NA	NA
SQG09424.1|960430_961630_-	lytic transglycosylase	NA	NA	NA	NA	NA
SQG09425.1|961626_962391_-	Hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
SQG09426.1|962402_963053_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SQG09427.1|963066_963519_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	53.4	1.0e-42
SQG09428.1|963523_964255_+	DNA polymerase III subunit epsilon	NA	A0A1B2LRV5	Wolbachia_phage	42.4	3.8e-07
SQG09429.1|964366_965071_-	protein phosphatase	NA	NA	NA	NA	NA
SQG09430.1|965746_968761_-	autotransporter	NA	NA	NA	NA	NA
SQG09431.1|969052_969457_+	Uncharacterised protein	NA	A0A1C9C5K8	Heterosigma_akashiwo_virus	35.3	1.3e-17
SQG09432.1|969535_970561_-	ADP-heptose--lipooligosaccharide heptosyltransferase II	NA	NA	NA	NA	NA
SQG09433.1|970575_971352_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA	NA
SQG09434.1|971351_972119_+	beta-lactamase domain-containing protein	NA	NA	NA	NA	NA
SQG09435.1|972115_972505_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQG09436.1|972980_973298_+	quaternary ammonium compound-resistance protein sugE	NA	NA	NA	NA	NA
SQG09437.1|973656_984561_+	glycine-rich autotransporter protein	NA	NA	NA	NA	NA
981696:981714	attL	CGGCGTGCTGGTGCTGACC	NA	NA	NA	NA
SQG09438.1|984617_985274_-	acetyltransferase	NA	NA	NA	NA	NA
SQG09439.1|985400_985811_+	Protein of uncharacterised function (DUF3592)	NA	NA	NA	NA	NA
SQG09440.1|986384_988436_+	DNA polymerase III subunits gamma and tau	NA	A0A1U9WR94	Streptococcus_virus	41.4	2.1e-47
SQG09441.1|988442_988763_+	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQG09442.1|988874_989474_+	Recombination protein RecR	NA	NA	NA	NA	NA
SQG09443.1|989541_989901_+	bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
SQG09444.1|989981_990509_-	Starvation lipoprotein Slp	NA	NA	NA	NA	NA
SQG09445.1|990505_992455_-	transmembrane transglutaminase	NA	NA	NA	NA	NA
SQG09446.1|992447_993392_-	transmembrane protein	NA	NA	NA	NA	NA
SQG09447.1|993394_994348_-	ATPase	NA	NA	NA	NA	NA
SQG09448.1|994390_996232_+	transmembrane protein	NA	NA	NA	NA	NA
SQG09449.1|996405_997350_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG09450.1|997490_998060_-	Maf-like protein	NA	NA	NA	NA	NA
SQG09451.1|998212_998683_+	characterised ACR protein	NA	NA	NA	NA	NA
SQG09452.1|998790_998985_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
SQG09453.1|999076_1000054_+	3-oxoacyl-[acyl-carrier-protein] synthase,KASIII	NA	NA	NA	NA	NA
SQG09454.1|1000132_1000915_+	Mn2-dependent serine/threonine protein kinase	NA	NA	NA	NA	NA
SQG09455.1|1001171_1002116_+	malonyl CoA-ACP transacylase	NA	NA	NA	NA	NA
SQG09456.1|1002198_1002942_+	3-oxoacyl-ACP reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.3	4.7e-13
SQG09457.1|1003094_1003334_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	44.6	4.6e-10
SQG09458.1|1003477_1004740_+	3-oxoacyl-ACP synthase	NA	NA	NA	NA	NA
SQG09459.1|1004919_1006284_+	Para-aminobenzoate synthase, aminase component	NA	NA	NA	NA	NA
SQG09460.1|1006482_1007544_+	protein YceG like	NA	NA	NA	NA	NA
SQG09461.1|1007540_1008206_+	thymidylate kinase	NA	W8D0J5	Erwinia_phage	35.0	1.6e-20
SQG09462.1|1008202_1009159_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
SQG09463.1|1009155_1009509_+	type IV pilus assembly protein PilZ	NA	NA	NA	NA	NA
SQG09464.1|1009785_1010076_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG09465.1|1010150_1010345_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG09466.1|1010692_1010872_+	Uncharacterized small protein	NA	NA	NA	NA	NA
SQG09467.1|1010996_1011572_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG09468.1|1011587_1011716_-|tail	phage tail assembly protein I	tail	NA	NA	NA	NA
SQG09469.1|1012079_1012643_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG09470.1|1012695_1013103_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG09471.1|1013663_1014044_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
SQG09472.1|1014074_1015148_-	late control D family protein	NA	D5LGY1	Escherichia_phage	52.2	8.4e-96
SQG09473.1|1015138_1015354_-|tail	phage tail protein	tail	A0A193GYC8	Enterobacter_phage	54.3	1.6e-14
SQG09474.1|1015337_1015805_-|tail	phage tail protein	tail	A0A218M4I2	Erwinia_phage	35.2	1.1e-15
SQG09475.1|1015807_1018255_-|tail	bacteriophage tail protein	tail	A0A1W6JT50	Escherichia_phage	22.8	9.4e-26
SQG09476.1|1018375_1018666_-	Uncharacterised protein	NA	A0A193GYZ8	Enterobacter_phage	58.5	1.5e-18
SQG09477.1|1018746_1019250_-|tail	major tail tube protein	tail	A0A193GYM4	Enterobacter_phage	51.2	1.4e-40
SQG09478.1|1019252_1020455_-|tail	bacteriophage major tail sheath protein	tail	A0A088FVH5	Escherichia_phage	54.2	6.1e-127
SQG09479.1|1020561_1021221_-	Uncharacterised protein	NA	V9IQM3	Stenotrophomonas_phage	30.4	6.2e-17
SQG09480.1|1021222_1023424_-|tail	phage tail protein	tail	V9IQX0	Stenotrophomonas_phage	40.2	1.5e-115
SQG09481.1|1023431_1024211_-|tail	bacteriophage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	51.1	7.1e-44
SQG09482.1|1024203_1025100_-|plate	phage baseplate assembly protein	plate	V5YTH6	Pseudomonas_phage	56.1	3.2e-80
SQG09483.1|1025102_1025441_-|plate	phage baseplate assembly protein	plate	A0A193GYY8	Enterobacter_phage	62.2	7.8e-32
SQG09484.1|1025493_1026084_-|plate	baseplate assembly protein	plate	A0A193GYL5	Enterobacter_phage	37.7	3.6e-24
SQG09485.1|1026080_1026635_-	phage-like protein	NA	NA	NA	NA	NA
SQG09486.1|1026988_1027366_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG09487.1|1027362_1027848_-	endolysin/phage lysozyme	NA	D5LH07	Escherichia_phage	55.6	3.2e-42
SQG09488.1|1027844_1028195_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG09489.1|1028191_1028641_-	Mor transcription activator family	NA	NA	NA	NA	NA
SQG09490.1|1028975_1029359_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG09491.1|1029511_1030150_-	phage-like protein	NA	A0A2H4J8A1	uncultured_Caudovirales_phage	37.6	5.8e-20
SQG09492.1|1030191_1030419_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG09493.1|1030493_1030769_-	regulatory protein	NA	NA	NA	NA	NA
SQG09494.1|1030769_1033106_-|integrase	phage integrase	integrase	D5LH15	Escherichia_phage	43.3	9.6e-137
1040256:1040274	attR	GGTCAGCACCAGCACGCCG	NA	NA	NA	NA
>prophage 4
LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	4481118	1925854	1941223	4481118	portal,tail,lysis,capsid,terminase,head	Pseudomonas_phage(33.33%)	26	NA	NA
SQG10319.1|1925854_1926553_-	Peptidase S24-like	NA	A0A1B5FPF4	Escherichia_phage	33.0	1.0e-09
SQG10320.1|1926860_1927115_+	CI repressor	NA	NA	NA	NA	NA
SQG10321.1|1927224_1927755_+	Uncharacterised protein	NA	B7SYH6	Stenotrophomonas_phage	46.2	6.1e-39
SQG10322.1|1927751_1928063_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG10323.1|1928483_1928954_+	Uncharacterised protein	NA	A0A248SL49	Klebsiella_phage	41.7	1.0e-13
SQG10324.1|1928943_1929606_+	Uncharacterised protein	NA	A0A1B0VMD9	Pseudomonas_phage	37.8	8.2e-25
SQG10325.1|1929602_1929797_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG10326.1|1929796_1930165_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG10327.1|1930161_1930365_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG10328.1|1930435_1931152_+	Uncharacterised protein	NA	C8CLH7	Xylella_phage	49.1	4.7e-50
SQG10329.1|1931246_1931465_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG10330.1|1931594_1932083_+	lysozyme	NA	D5LH07	Escherichia_phage	76.4	4.6e-65
SQG10331.1|1932079_1932394_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG10332.1|1932390_1932867_+|lysis	bacteriophage lysis protein	lysis	NA	NA	NA	NA
SQG10333.1|1932863_1933208_+	Uncharacterised protein	NA	A0A2H4J7A6	uncultured_Caudovirales_phage	66.7	2.1e-40
SQG10334.1|1933370_1933634_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG10335.1|1933633_1934032_+	HNH endonuclease	NA	A0A2H4PHY5	Pseudomonas_phage	49.3	2.4e-11
SQG10336.1|1934114_1934495_+|terminase	Phage terminase, small subunit	terminase	Q9XJT7	Pseudomonas_phage	57.1	8.0e-33
SQG10337.1|1934498_1936169_+|terminase	terminase	terminase	A0A0U4B0C7	Pseudomonas_phage	69.2	3.9e-225
SQG10338.1|1936168_1937473_+|portal	phage portal protein, HK97 family	portal	C7BGG8	Burkholderia_phage	37.1	1.2e-59
SQG10339.1|1937435_1938197_+	peptidase S14 ClpP	NA	C7BGG9	Burkholderia_phage	50.3	3.5e-48
SQG10340.1|1938265_1939510_+|capsid	phage major capsid protein, HK97 family	capsid	C7BGH0	Burkholderia_phage	47.1	4.8e-95
SQG10341.1|1939567_1939972_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG10342.1|1939975_1940398_+|head,tail	Phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
SQG10343.1|1940394_1940727_+|head,tail	Bacteriophage head-tail adaptor	head,tail	B5WZS5	Pseudomonas_phage	35.5	1.5e-11
SQG10344.1|1940719_1941223_+	phage protein, HK97 gp10 family	NA	A4JX05	Burkholderia_virus	32.5	1.3e-09
>prophage 5
LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	4481118	2231749	2237337	4481118		Stenotrophomonas_phage(83.33%)	9	NA	NA
SQG10601.1|2231749_2232109_+	phage-like protein	NA	Q38057	Xanthomonas_phage	49.1	9.9e-25
SQG10602.1|2232655_2233876_-	Zonula occludens toxin	NA	B1NI81	Stenotrophomonas_phage	30.1	4.4e-40
SQG10603.1|2233872_2234157_-	Protein of uncharacterised function (DUF2523)	NA	NA	NA	NA	NA
SQG10604.1|2234156_2235056_-	Uncharacterised protein	NA	Q4LAU2	Stenotrophomonas_phage	68.0	4.0e-14
SQG10605.1|2235175_2235313_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG10606.1|2235336_2235528_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG10607.1|2235531_2235834_-	Uncharacterised protein	NA	B1NI78	Stenotrophomonas_phage	73.5	8.0e-36
SQG10608.1|2235840_2236947_-	phage replication protein NMA0782	NA	S0F3I3	Stenotrophomonas_phage	87.0	1.0e-192
SQG10609.1|2237109_2237337_-	Uncharacterised protein	NA	S0F3S0	Stenotrophomonas_phage	43.9	6.9e-08
