assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900475405.1_44087_C01	LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	1	25720-25865	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	TGCCGGCCAGCGGCCGGCACTACC	24	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|203aa|up_7|LS483377.1_17012_17621_+,NA|178aa|up_6|LS483377.1_17705_18239_+,NA|61aa|up_5|LS483377.1_18590_18773_+,NA|56aa|up_2|LS483377.1_21956_22124_-,NA|113aa|down_0|LS483377.1_25867_26206_-,NA|133aa|down_1|LS483377.1_26354_26753_+,NA|131aa|down_4|LS483377.1_30399_30792_-	NA|248aa|up_9|LS483377.1_14936_15680_+	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|364aa|up_8|LS483377.1_15781_16873_+	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|203aa|up_7|LS483377.1_17012_17621_+	NA	NA|178aa|up_6|LS483377.1_17705_18239_+	NA	NA|61aa|up_5|LS483377.1_18590_18773_+	NA	NA|237aa|up_4|LS483377.1_19993_20704_-	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily	NA|339aa|up_3|LS483377.1_20812_21829_-	PRK09293, PRK09293, class 1 fructose-bisphosphatase	NA|56aa|up_2|LS483377.1_21956_22124_-	NA	NA|401aa|up_1|LS483377.1_22243_23446_-	PRK09257, PRK09257, aromatic amino acid transaminase	NA|698aa|up_0|LS483377.1_23617_25711_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|113aa|down_0|LS483377.1_25867_26206_-	NA	NA|133aa|down_1|LS483377.1_26354_26753_+	NA	NA|307aa|down_2|LS483377.1_26917_27838_+	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku	NA|829aa|down_3|LS483377.1_27841_30328_+	PRK05972, ligD, ATP-dependent DNA ligase; Reviewed	NA|131aa|down_4|LS483377.1_30399_30792_-	NA	NA|343aa|down_5|LS483377.1_30959_31988_-	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)	NA|213aa|down_6|LS483377.1_32084_32723_-	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	NA|219aa|down_7|LS483377.1_32836_33493_-	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|347aa|down_8|LS483377.1_33680_34721_+	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	NA|298aa|down_9|LS483377.1_34831_35725_-	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed
GCA_900475405.1_44087_C01	LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	2	751337-751436	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	TTCATCCACGCATGGCGTGGATCT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|144aa|up_1|LS483377.1_748598_749030_-,NA|309aa|down_5|LS483377.1_758453_759380_+	NA|404aa|up_9|LS483377.1_738269_739481_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|572aa|up_8|LS483377.1_739806_741522_+	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924	NA|267aa|up_7|LS483377.1_741518_742319_+	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	NA|353aa|up_6|LS483377.1_742458_743517_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|337aa|up_5|LS483377.1_743575_744586_-	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|609aa|up_4|LS483377.1_744582_746409_-	pfam10131, PTPS_related, 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein	NA|276aa|up_3|LS483377.1_746570_747398_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|358aa|up_2|LS483377.1_747455_748529_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|144aa|up_1|LS483377.1_748598_749030_-	NA	NA|306aa|up_0|LS483377.1_749139_750057_-	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|433aa|down_0|LS483377.1_752425_753724_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|324aa|down_1|LS483377.1_753917_754889_+	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR)	NA|67aa|down_2|LS483377.1_755178_755379_+	pfam10636, hemP, Hemin uptake protein hemP	NA|748aa|down_3|LS483377.1_755532_757776_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|200aa|down_4|LS483377.1_757780_758380_+	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism]	NA|309aa|down_5|LS483377.1_758453_759380_+	NA	NA|839aa|down_6|LS483377.1_759487_762004_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|216aa|down_7|LS483377.1_762000_762648_-	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|215aa|down_8|LS483377.1_762723_763368_+	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|238aa|down_9|LS483377.1_763455_764169_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCA_900475405.1_44087_C01	LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	3	814748-814852	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	TTTGCCGGCCAGCGGCCGGCACTACC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|109aa|up_3|LS483377.1_811919_812246_-,NA|140aa|down_0|LS483377.1_814914_815334_-	NA|185aa|up_9|LS483377.1_805485_806040_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|312aa|up_8|LS483377.1_806036_806972_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|229aa|up_7|LS483377.1_806968_807655_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|774aa|up_6|LS483377.1_807881_810203_+	pfam07793, DUF1631, Protein of unknown function (DUF1631)	NA|360aa|up_5|LS483377.1_810254_811334_+	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains	NA|154aa|up_4|LS483377.1_811454_811916_-	pfam11304, DUF3106, Protein of unknown function (DUF3106)	NA|109aa|up_3|LS483377.1_811919_812246_-	NA	NA|195aa|up_2|LS483377.1_812242_812827_-	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated	NA|107aa|up_1|LS483377.1_812925_813246_+	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch	NA|487aa|up_0|LS483377.1_813242_814703_+	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit	NA|140aa|down_0|LS483377.1_814914_815334_-	NA	NA|166aa|down_1|LS483377.1_815510_816008_+	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT	NA|365aa|down_2|LS483377.1_816067_817162_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|581aa|down_3|LS483377.1_817613_819356_+	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13	NA|165aa|down_4|LS483377.1_819476_819971_-	COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|112aa|down_5|LS483377.1_820041_820377_-	pfam09842, DUF2069, Predicted membrane protein (DUF2069)	NA|198aa|down_6|LS483377.1_820373_820967_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|425aa|down_7|LS483377.1_821044_822319_+	PRK04214, rbn, ribonuclease BN/unknown domain fusion protein; Reviewed	NA|190aa|down_8|LS483377.1_822315_822885_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|261aa|down_9|LS483377.1_823511_824294_-	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family
GCA_900475405.1_44087_C01	LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	4	2566281-2566381	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	TTGCCGGCCAGCGGCCGGCACTACC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA,NA	NA|796aa|up_9|LS483377.1_2555864_2558252_+	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL	NA|720aa|up_8|LS483377.1_2558512_2560672_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|183aa|up_7|LS483377.1_2560661_2561210_+	cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX	NA|157aa|up_6|LS483377.1_2561250_2561721_-	PRK11050, PRK11050, manganese-binding transcriptional regulator MntR	NA|444aa|up_5|LS483377.1_2561838_2563170_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|172aa|up_4|LS483377.1_2563209_2563725_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|150aa|up_3|LS483377.1_2563673_2564123_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|109aa|up_2|LS483377.1_2564417_2564744_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|181aa|up_1|LS483377.1_2564715_2565258_-	PRK09271, PRK09271, flavodoxin; Provisional	NA|347aa|up_0|LS483377.1_2565208_2566249_-	PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|788aa|down_0|LS483377.1_2566424_2568788_-	PRK09209, PRK09209, ribonucleoside-diphosphate reductase subunit alpha	NA|326aa|down_1|LS483377.1_2569218_2570196_+	cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2	NA|876aa|down_2|LS483377.1_2570528_2573156_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|660aa|down_3|LS483377.1_2573222_2575202_-	PRK09928, PRK09928, choline transport protein BetT; Provisional	NA|130aa|down_4|LS483377.1_2575397_2575787_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|173aa|down_5|LS483377.1_2575937_2576456_+	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional	NA|317aa|down_6|LS483377.1_2576452_2577403_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|983aa|down_7|LS483377.1_2577472_2580421_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|108aa|down_8|LS483377.1_2580560_2580884_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|118aa|down_9|LS483377.1_2580883_2581237_-	PRK10452, PRK10452, multidrug/spermidine efflux SMR transporter subunit MdtJ
GCA_900475405.1_44087_C01	LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	5	2841049-2841148	5	CRISPRCasFinder	no	DEDDh,csa3	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Type I-A	GGTAGATGCCCACCTTGGTGGGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|100aa|up_9|LS483377.1_2832906_2833206_+,NA|105aa|up_8|LS483377.1_2833213_2833528_+,NA|98aa|down_6|LS483377.1_2853648_2853942_-	NA|100aa|up_9|LS483377.1_2832906_2833206_+	NA	NA|105aa|up_8|LS483377.1_2833213_2833528_+	NA	NA|213aa|up_7|LS483377.1_2833535_2834174_+	pfam04299, FMN_bind_2, Putative FMN-binding domain	NA|221aa|up_6|LS483377.1_2834248_2834911_+	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|174aa|up_5|LS483377.1_2834931_2835453_+	PRK13264, PRK13264, 3-hydroxyanthranilate 3,4-dioxygenase; Provisional	NA|425aa|up_4|LS483377.1_2835615_2836890_+	TIGR01814, kynureninase, kynureninase	NA|456aa|up_3|LS483377.1_2836921_2838289_+	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	DEDDh|480aa|up_2|LS483377.1_2838288_2839728_+	PRK11779, sbcB, exonuclease I; Provisional	NA|229aa|up_1|LS483377.1_2839724_2840411_+	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein	NA|184aa|up_0|LS483377.1_2840466_2841018_+	pfam11159, DUF2939, Protein of unknown function (DUF2939)	NA|315aa|down_0|LS483377.1_2841198_2842143_-	pfam06189, 5-nucleotidase, 5'-nucleotidase	NA|258aa|down_1|LS483377.1_2842190_2842964_-	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed	NA|1659aa|down_2|LS483377.1_2843154_2848131_-	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase	NA|219aa|down_3|LS483377.1_2848381_2849038_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|423aa|down_4|LS483377.1_2849037_2850306_+	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit	NA|1058aa|down_5|LS483377.1_2850321_2853495_+	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|98aa|down_6|LS483377.1_2853648_2853942_-	NA	NA|306aa|down_7|LS483377.1_2854219_2855137_+	PRK15188, PRK15188, fimbrial chaperone protein BcfB; Provisional	NA|383aa|down_8|LS483377.1_2855182_2856331_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	csa3|310aa|down_9|LS483377.1_2856484_2857414_+	pfam08241, Methyltransf_11, Methyltransferase domain
GCA_900475405.1_44087_C01	LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	6	3293413-3293516	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	CGGTCGTGCCGGCCGCTGGCCGGCAA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|180aa|up_6|LS483377.1_3286234_3286774_+,NA|97aa|up_5|LS483377.1_3286788_3287079_+,NA|221aa|up_1|LS483377.1_3291107_3291770_-,NA	NA|697aa|up_9|LS483377.1_3282742_3284833_+	PRK11249, katE, hydroperoxidase II; Provisional	NA|163aa|up_8|LS483377.1_3284855_3285344_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|247aa|up_7|LS483377.1_3285353_3286094_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|180aa|up_6|LS483377.1_3286234_3286774_+	NA	NA|97aa|up_5|LS483377.1_3286788_3287079_+	NA	NA|709aa|up_4|LS483377.1_3287168_3289295_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|321aa|up_3|LS483377.1_3289527_3290490_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|226aa|up_2|LS483377.1_3290494_3291172_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|221aa|up_1|LS483377.1_3291107_3291770_-	NA	NA|431aa|up_0|LS483377.1_3291887_3293180_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|62aa|down_0|LS483377.1_3293551_3293737_-	COG3242, COG3242, Uncharacterized protein conserved in bacteria [Function unknown]	NA|288aa|down_1|LS483377.1_3293804_3294668_-	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|378aa|down_2|LS483377.1_3294664_3295798_-	TIGR01933, Protein_HflK, HflK protein	NA|332aa|down_3|LS483377.1_3295951_3296947_+	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases	NA|124aa|down_4|LS483377.1_3297035_3297407_+	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains	NA|298aa|down_5|LS483377.1_3297495_3298389_-	PRK10266, PRK10266, curved DNA-binding protein	NA|161aa|down_6|LS483377.1_3298649_3299132_+	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol	NA|192aa|down_7|LS483377.1_3299161_3299737_+	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]	NA|790aa|down_8|LS483377.1_3299809_3302179_-	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]	NA|1636aa|down_9|LS483377.1_3302255_3307163_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]
GCA_900475405.1_44087_C01	LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	7	3560936-3561089	1	PILER-CR	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	GCTCTGGTGGGTGCCAACCGTTGGTTGGCACC	32	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA,NA|215aa|down_0|LS483377.1_3561161_3561806_+,NA|248aa|down_1|LS483377.1_3561982_3562726_-	NA|335aa|up_9|LS483377.1_3549575_3550580_-	cd01467, vWA_BatA_type, VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|150aa|up_8|LS483377.1_3550576_3551026_-	pfam14316, DUF4381, Domain of unknown function (DUF4381)	NA|310aa|up_7|LS483377.1_3551022_3551952_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|342aa|up_6|LS483377.1_3551960_3552986_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|656aa|up_5|LS483377.1_3553184_3555152_-	TIGR02515, Putative_DNA_transport_protein_HofQ, type IV pilus secretin (or competence protein) PilQ	NA|178aa|up_4|LS483377.1_3555173_3555707_-	pfam04351, PilP, Pilus assembly protein, PilP	NA|219aa|up_3|LS483377.1_3555703_3556360_-	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]	NA|291aa|up_2|LS483377.1_3556356_3557229_-	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]	NA|353aa|up_1|LS483377.1_3557228_3558287_-	pfam11104, PilM_2, Type IV pilus assembly protein PilM;	NA|808aa|up_0|LS483377.1_3558506_3560930_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|215aa|down_0|LS483377.1_3561161_3561806_+	NA	NA|248aa|down_1|LS483377.1_3561982_3562726_-	NA	NA|1532aa|down_2|LS483377.1_3562795_3567391_-	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll	NA|236aa|down_3|LS483377.1_3567452_3568160_-	PRK15308, PRK15308, fimbrial protein TcfA	NA|378aa|down_4|LS483377.1_3568177_3569311_-	pfam07434, CblD, CblD like pilus biogenesis initiator	NA|910aa|down_5|LS483377.1_3569307_3572037_-	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional	NA|166aa|down_6|LS483377.1_3572097_3572595_-	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit	NA|340aa|down_7|LS483377.1_3573113_3574133_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|426aa|down_8|LS483377.1_3574498_3575776_-	PRK05614, gltA, citrate synthase	NA|81aa|down_9|LS483377.1_3576072_3576315_-	PRK01678, rpmE2, type B 50S ribosomal protein L31
GCA_900475405.1_44087_C01	LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	8	3574247-3574359	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGG	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|215aa|up_7|LS483377.1_3561161_3561806_+,NA|248aa|up_6|LS483377.1_3561982_3562726_-,NA	NA|353aa|up_9|LS483377.1_3557228_3558287_-	pfam11104, PilM_2, Type IV pilus assembly protein PilM;	NA|808aa|up_8|LS483377.1_3558506_3560930_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|215aa|up_7|LS483377.1_3561161_3561806_+	NA	NA|248aa|up_6|LS483377.1_3561982_3562726_-	NA	NA|1532aa|up_5|LS483377.1_3562795_3567391_-	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll	NA|236aa|up_4|LS483377.1_3567452_3568160_-	PRK15308, PRK15308, fimbrial protein TcfA	NA|378aa|up_3|LS483377.1_3568177_3569311_-	pfam07434, CblD, CblD like pilus biogenesis initiator	NA|910aa|up_2|LS483377.1_3569307_3572037_-	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional	NA|166aa|up_1|LS483377.1_3572097_3572595_-	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit	NA|340aa|up_0|LS483377.1_3573113_3574133_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|426aa|down_0|LS483377.1_3574498_3575776_-	PRK05614, gltA, citrate synthase	NA|81aa|down_1|LS483377.1_3576072_3576315_-	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|313aa|down_2|LS483377.1_3576403_3577342_-	cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans	NA|704aa|down_3|LS483377.1_3577726_3579838_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|129aa|down_4|LS483377.1_3579845_3580232_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|721aa|down_5|LS483377.1_3580380_3582543_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|100aa|down_6|LS483377.1_3582648_3582948_-	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|222aa|down_7|LS483377.1_3583058_3583724_-	PRK00300, gmk, guanylate kinase; Provisional	NA|306aa|down_8|LS483377.1_3587094_3588012_+	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing	NA|216aa|down_9|LS483377.1_3588008_3588656_+	COG2864, FdnI, Cytochrome b subunit of formate dehydrogenase [Energy production and conversion]
GCA_900475405.1_44087_C01	LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	9	3667202-3667310	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	CAGTGCCAACCAAGGTTGGCACCTACCAGGGC	32	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|38aa|up_9|LS483377.1_3657565_3657679_+,NA|336aa|up_2|LS483377.1_3664296_3665304_-,NA	NA|38aa|up_9|LS483377.1_3657565_3657679_+	NA	NA|364aa|up_8|LS483377.1_3657665_3658757_+	PRK08813, PRK08813, threonine dehydratase; Provisional	NA|529aa|up_7|LS483377.1_3658753_3660340_+	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|260aa|up_6|LS483377.1_3660350_3661130_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|473aa|up_5|LS483377.1_3661190_3662609_+	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|193aa|up_4|LS483377.1_3662608_3663187_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|354aa|up_3|LS483377.1_3663176_3664238_+	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|336aa|up_2|LS483377.1_3664296_3665304_-	NA	NA|258aa|up_1|LS483377.1_3665377_3666151_-	PRK12744, PRK12744, SDR family oxidoreductase	NA|302aa|up_0|LS483377.1_3666268_3667174_+	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|1054aa|down_0|LS483377.1_3667332_3670494_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|227aa|down_1|LS483377.1_3671746_3672427_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|216aa|down_2|LS483377.1_3672563_3673211_+	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|453aa|down_3|LS483377.1_3673227_3674586_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|406aa|down_4|LS483377.1_3674673_3675891_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|433aa|down_5|LS483377.1_3676107_3677406_-	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed	NA|306aa|down_6|LS483377.1_3677466_3678384_+	PRK08733, PRK08733, LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase	NA|444aa|down_7|LS483377.1_3678940_3680272_-	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]	NA|375aa|down_8|LS483377.1_3680252_3681377_-	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences	NA|66aa|down_9|LS483377.1_3681392_3681590_-	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_900475405.1_44087_C01	LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	10	3765600-3765680	9	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	CGACCAAGGTCGGCACCCACCAGAGCGG	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|213aa|up_4|LS483377.1_3761124_3761763_+,NA|112aa|up_2|LS483377.1_3763324_3763660_-,NA|145aa|up_0|LS483377.1_3765111_3765546_+,NA	NA|954aa|up_9|LS483377.1_3752770_3755632_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|137aa|up_8|LS483377.1_3755902_3756313_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|662aa|up_7|LS483377.1_3756510_3758496_+	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|407aa|up_6|LS483377.1_3758700_3759921_+	PRK10885, cca, multifunctional CCA addition/repair protein	NA|145aa|up_5|LS483377.1_3760000_3760435_-	pfam07179, SseB, SseB protein N-terminal domain	NA|213aa|up_4|LS483377.1_3761124_3761763_+	NA	NA|495aa|up_3|LS483377.1_3761759_3763244_+	cd00519, Lipase_3, Lipase (class 3)	NA|112aa|up_2|LS483377.1_3763324_3763660_-	NA	NA|348aa|up_1|LS483377.1_3763656_3764700_-	pfam03572, Peptidase_S41, Peptidase family S41	NA|145aa|up_0|LS483377.1_3765111_3765546_+	NA	NA|1010aa|down_0|LS483377.1_3765702_3768732_-	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria	NA|356aa|down_1|LS483377.1_3769031_3770099_-	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown]	NA|383aa|down_2|LS483377.1_3770098_3771247_-	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|343aa|down_3|LS483377.1_3771246_3772275_-	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]	NA|356aa|down_4|LS483377.1_3772282_3773350_-	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	NA|430aa|down_5|LS483377.1_3773389_3774679_-	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|340aa|down_6|LS483377.1_3775057_3776077_+	PRK12408, PRK12408, glucokinase; Provisional	NA|903aa|down_7|LS483377.1_3776220_3778929_+	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|786aa|down_8|LS483377.1_3779040_3781398_+	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	NA|131aa|down_9|LS483377.1_3781503_3781896_-	COG5652, COG5652, Predicted integral membrane protein [Function unknown]
GCA_900475405.1_44087_C01	LS483377	Stenotrophomonas maltophilia strain NCTC10258 genome assembly, chromosome: 1	11	3797069-3797179	10	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	GGCGAAGGCGTGCGGACCAACGGTCCGCACCCACC	35	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|61aa|up_9|LS483377.1_3785667_3785850_-,NA|419aa|up_2|LS483377.1_3792657_3793914_-,NA	NA|61aa|up_9|LS483377.1_3785667_3785850_-	NA	NA|504aa|up_8|LS483377.1_3785849_3787361_-	PRK13837, PRK13837, two-component system VirA-like sensor kinase	NA|147aa|up_7|LS483377.1_3787365_3787806_-	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|606aa|up_6|LS483377.1_3787802_3789620_-	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|128aa|up_5|LS483377.1_3789854_3790238_-	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only]	NA|348aa|up_4|LS483377.1_3790408_3791452_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|302aa|up_3|LS483377.1_3791741_3792647_-	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|419aa|up_2|LS483377.1_3792657_3793914_-	NA	NA|197aa|up_1|LS483377.1_3793910_3794501_-	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242)	NA|726aa|up_0|LS483377.1_3794745_3796923_-	PRK11186, PRK11186, carboxy terminal-processing peptidase	NA|237aa|down_0|LS483377.1_3798207_3798918_-	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB	NA|93aa|down_1|LS483377.1_3798905_3799184_-	PRK00907, PRK00907, hypothetical protein; Provisional	NA|353aa|down_2|LS483377.1_3799535_3800594_+	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219)	NA|406aa|down_3|LS483377.1_3800868_3802086_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|422aa|down_4|LS483377.1_3802186_3803452_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|374aa|down_5|LS483377.1_3803448_3804570_-	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|365aa|down_6|LS483377.1_3805585_3806680_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|371aa|down_7|LS483377.1_3806816_3807929_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|692aa|down_8|LS483377.1_3807925_3810001_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|162aa|down_9|LS483377.1_3810004_3810490_-	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
