assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900475435.1_42912_B01	LS483380	Streptococcus equi subsp. zooepidemicus strain NCTC11824 genome assembly, chromosome: 1	1	566375-567597	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	 Type I-U?,Type I-C,Type I-U	GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT,GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT,GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT,GTCTCGCCTTTCATGGGCGAGCGGATTGAAATAT	32,32,32,34	0	0	NA	NA	I-C:I-C:I-C:NA	15,18,17,15	18	TypeI-U,TypeI-C,TypeI-U?	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA|84aa|up_9|LS483380.1_556661_556913_+,NA|30aa|up_8|LS483380.1_556912_557002_+,NA	NA|84aa|up_9|LS483380.1_556661_556913_+	NA	NA|30aa|up_8|LS483380.1_556912_557002_+	NA	NA|108aa|up_7|LS483380.1_557132_557456_+	pfam15597, Imm59, Immunity protein 59	cas3|818aa|up_6|LS483380.1_558082_560536_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|248aa|up_5|LS483380.1_560752_561496_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|628aa|up_4|LS483380.1_561495_563379_+	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|283aa|up_3|LS483380.1_563379_564228_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|224aa|up_2|LS483380.1_564229_564901_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|LS483380.1_564897_565923_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|LS483380.1_565933_566227_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|237aa|down_0|LS483380.1_567936_568647_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|210aa|down_1|LS483380.1_568660_569290_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|371aa|down_2|LS483380.1_569307_570420_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|LS483380.1_570688_571429_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|573aa|down_4|LS483380.1_571425_573144_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|363aa|down_5|LS483380.1_573183_574272_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|235aa|down_6|LS483380.1_574286_574991_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|163aa|down_7|LS483380.1_575247_575736_+	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|158aa|down_8|LS483380.1_576295_576769_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_9|LS483380.1_576909_577590_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
GCA_900475435.1_42912_B01	LS483380	Streptococcus equi subsp. zooepidemicus strain NCTC11824 genome assembly, chromosome: 1	2	873565-873674	2	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	Orphan	CTGACTTGATGACAGCTTATACTAAAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA|79aa|up_5|LS483380.1_867313_867550_-,NA|62aa|up_4|LS483380.1_867677_867863_-,NA|96aa|up_3|LS483380.1_867855_868143_-,NA|152aa|up_2|LS483380.1_868142_868598_-,NA|126aa|up_1|LS483380.1_868849_869227_-,NA|713aa|down_5|LS483380.1_877838_879977_+,NA|41aa|down_6|LS483380.1_879977_880100_+	NA|478aa|up_9|LS483380.1_862222_863656_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|270aa|up_8|LS483380.1_863736_864546_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|392aa|up_7|LS483380.1_864860_866036_+	pfam09028, Mac-1, Mac 1	NA|343aa|up_6|LS483380.1_866115_867144_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|79aa|up_5|LS483380.1_867313_867550_-	NA	NA|62aa|up_4|LS483380.1_867677_867863_-	NA	NA|96aa|up_3|LS483380.1_867855_868143_-	NA	NA|152aa|up_2|LS483380.1_868142_868598_-	NA	NA|126aa|up_1|LS483380.1_868849_869227_-	NA	NA|1240aa|up_0|LS483380.1_869706_873426_+	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|180aa|down_0|LS483380.1_873714_874254_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|212aa|down_1|LS483380.1_874243_874879_+	pfam13490, zf-HC2, Putative zinc-finger	NA|232aa|down_2|LS483380.1_875006_875702_+	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins	NA|226aa|down_3|LS483380.1_875715_876393_+	pfam16316, DUF4956, Domain of unknown function (DUF4956)	NA|478aa|down_4|LS483380.1_876398_877832_+	pfam08757, CotH, CotH kinase protein	NA|713aa|down_5|LS483380.1_877838_879977_+	NA	NA|41aa|down_6|LS483380.1_879977_880100_+	NA	NA|465aa|down_7|LS483380.1_880123_881518_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|1098aa|down_8|LS483380.1_881656_884950_+	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|1215aa|down_9|LS483380.1_884939_888584_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type
GCA_900475435.1_42912_B01	LS483380	Streptococcus equi subsp. zooepidemicus strain NCTC11824 genome assembly, chromosome: 1	3	1382051-1382481	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	Type II-A,Type II-B,Type II-C	GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC,GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC,GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	6,6,5	6	TypeII-A,TypeII-B,TypeII-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA,NA|297aa|down_7|LS483380.1_1390967_1391858_-,NA|141aa|down_8|LS483380.1_1391927_1392350_-	NA|129aa|up_9|LS483380.1_1367510_1367897_-	pfam09148, DUF1934, Domain of unknown function (DUF1934)	NA|434aa|up_8|LS483380.1_1367977_1369279_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|270aa|up_7|LS483380.1_1369503_1370313_+	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional	NA|405aa|up_6|LS483380.1_1370312_1371527_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|412aa|up_5|LS483380.1_1371526_1372762_+	pfam02388, FemAB, FemAB family	NA|253aa|up_4|LS483380.1_1372970_1373729_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|399aa|up_3|LS483380.1_1373994_1375191_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|1049aa|up_2|LS483380.1_1376139_1379286_+	pfam03272, Mucin_bdg, Putative mucin or carbohydrate-binding module	NA|363aa|up_1|LS483380.1_1379579_1380668_-	pfam13800, Sigma_reg_N, Sigma factor regulator N-terminal	NA|157aa|up_0|LS483380.1_1380651_1381122_-	TIGR02950, RNA_polymerase_ECF-type_sigma_factor, RNA polymerase sigma factor, SigM family	csn2|225aa|down_0|LS483380.1_1382756_1383431_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|LS483380.1_1383423_1383768_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|LS483380.1_1383764_1384634_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1349aa|down_3|LS483380.1_1384633_1388680_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|108aa|down_4|LS483380.1_1389190_1389514_-	pfam15597, Imm59, Immunity protein 59	NA|162aa|down_5|LS483380.1_1389577_1390063_-	pfam14021, TNT, Tuberculosis necrotizing toxin	NA|249aa|down_6|LS483380.1_1390206_1390953_-	pfam08929, DUF1911, Domain of unknown function (DUF1911)	NA|297aa|down_7|LS483380.1_1390967_1391858_-	NA	NA|141aa|down_8|LS483380.1_1391927_1392350_-	NA	NA|135aa|down_9|LS483380.1_1392539_1392944_-	pfam15599, Imm63, Immunity protein 63
