The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483389	Streptococcus pyogenes strain NCTC10879 genome assembly, chromosome: 1	1908146	30273	42634	1908146		Synechococcus_phage(28.57%)	8	NA	NA
SQG27412.1|30273_34047_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.0	7.9e-40
SQG27413.1|34207_35662_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.3	1.7e-54
SQG27414.1|35689_36712_+	phosphoribosylaminoimidazole synthetase	NA	R9TMC7	Synechococcus_phage	41.8	4.0e-63
SQG27415.1|36879_37434_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
SQG27416.1|37617_39165_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
SQG27417.1|39222_40347_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQG27418.1|40599_41865_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQG27419.1|42022_42634_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	4.0e-18
>prophage 2
LS483389	Streptococcus pyogenes strain NCTC10879 genome assembly, chromosome: 1	1908146	627392	707120	1908146	protease,tail,terminase,head,tRNA,integrase	Streptococcus_phage(59.68%)	96	706194:706212	707506:707524
SQG27951.1|627392_628232_+	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
SQG27952.1|628206_629067_+	GDSL family lipase	NA	NA	NA	NA	NA
SQG27953.1|629044_629632_+	membrane protein	NA	NA	NA	NA	NA
SQG27954.1|629730_630006_+	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
SQG27955.1|630094_631237_-|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
SQG27956.1|631360_631879_-	HIRAN domain protein	NA	E8ZDN5	Streptococcus_phage	45.9	1.6e-31
SQG27957.1|631890_632646_-	Cro/CI family transcriptional regulator	NA	A0A1S5S8S8	Streptococcus_phage	60.8	2.8e-77
SQG27958.1|632847_633060_+	helix-turn-helix family protein	NA	A0A1X9I583	Streptococcus_phage	56.7	1.1e-10
SQG27959.1|633100_633232_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG27960.1|633329_633641_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	77.7	5.3e-43
SQG27961.1|633642_633828_+	phage protein	NA	Q938N3	Temperate_phage	83.6	1.3e-20
SQG27962.1|634331_634718_+	phage DNA replication protein	NA	Q938N2	Temperate_phage	51.9	8.1e-25
SQG27963.1|634698_634932_+	phage protein	NA	Q938N1	Temperate_phage	96.1	2.8e-36
SQG27964.1|634928_635069_+	phage protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
SQG27965.1|635077_635284_+	phage protein	NA	NA	NA	NA	NA
SQG27966.1|635339_635669_+	phage protein	NA	J7KGX3	Streptococcus_phage	84.4	7.1e-46
SQG27967.1|635671_636598_+	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
SQG27968.1|636594_636795_+	phage protein	NA	NA	NA	NA	NA
SQG27969.1|636787_637585_+	phage protein	NA	J7KGZ1	Streptococcus_phage	83.8	1.3e-130
SQG27970.1|637706_637799_+	phage protein	NA	A0A1S5SCN4	Streptococcus_phage	70.0	3.7e-05
SQG27971.1|637949_638345_+	phage protein	NA	A8ATL9	Listeria_phage	52.3	1.4e-19
SQG27972.1|638341_638776_+	PcfJ	NA	A0A0H4U075	Erysipelothrix_phage	49.7	1.9e-30
SQG27973.1|638854_639688_+	PcfJ	NA	A8ATM0	Listeria_phage	52.4	1.9e-79
SQG27974.1|639698_640031_+	phage protein	NA	M1NS23	Streptococcus_phage	67.0	8.8e-36
SQG27975.1|640027_640540_+	lactococcus phage M3 family protein	NA	M1PFM2	Streptococcus_phage	85.9	1.7e-78
SQG27976.1|640575_640893_+	phage protein	NA	A1EAD7	Streptococcus_phage	71.4	9.0e-30
SQG27977.1|640889_641045_+	phage protein	NA	NA	NA	NA	NA
SQG27978.1|641041_641293_+	phage protein	NA	M1PF60	Streptococcus_phage	59.0	1.6e-18
SQG27979.1|641368_641788_+	phage protein	NA	A0A1X9I5B5	Streptococcus_phage	79.9	6.7e-57
SQG27980.1|642387_642744_+	phage protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
SQG27981.1|642740_644009_+	structural phage protein	NA	M1PFL4	Streptococcus_phage	75.6	2.2e-188
SQG27982.1|644001_645495_+	phage protein	NA	M1Q184	Streptococcus_phage	55.0	2.0e-87
SQG27983.1|645500_645725_+	phage protein	NA	NA	NA	NA	NA
SQG27984.1|645776_646043_+	secreted phage protein	NA	Q938K9	Temperate_phage	100.0	1.5e-38
SQG27985.1|646362_647778_+|terminase	phage terminase	terminase	A0A0B5A091	Streptococcus_phage	74.6	2.0e-214
SQG27986.1|647857_648319_+	phage protein	NA	M1Q1L0	Streptococcus_phage	53.2	4.5e-38
SQG27987.1|648343_649255_+|head	phage, major head protein	head	M1PFL0	Streptococcus_phage	67.0	2.2e-113
SQG27988.1|649254_649455_+	phage protein	NA	NA	NA	NA	NA
SQG27989.1|649464_649887_+	phage Gp19/Gp15/Gp42 family protein	NA	A0A0B5A2F6	Streptococcus_phage	67.2	8.2e-47
SQG27990.1|649846_650185_+	phage protein	NA	A0A0B5A086	Streptococcus_phage	75.0	8.1e-45
SQG27991.1|650177_650414_+	phage protein	NA	A0A1P8BMT2	Lactococcus_phage	66.7	2.5e-21
SQG27992.1|650414_650750_+	phage protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	1.7e-34
SQG27993.1|650761_651340_+|tail	Major tail protein	tail	A0A1X9I5X2	Streptococcus_phage	62.9	2.9e-58
SQG27994.1|651350_651614_+	phage protein	NA	A0A0B5A2F3	Streptococcus_phage	54.7	1.7e-18
SQG27995.1|651628_652000_+	phage protein	NA	M1PL84	Streptococcus_phage	59.2	1.2e-33
SQG27996.1|651999_654357_+|tail	minor tail protein GP26	tail	M1NRG5	Streptococcus_phage	50.3	2.6e-134
SQG27997.1|654353_655049_+	phage protein	NA	A0A1B1P761	Bacillus_phage	32.2	4.7e-07
SQG27998.1|655045_657007_+	phage endopeptidase	NA	M1PKG3	Streptococcus_phage	49.0	1.4e-96
SQG27999.1|657003_658119_+	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	66.6	4.8e-110
SQG28000.1|658133_659915_+	gp58-like family protein	NA	Q938J9	Temperate_phage	40.2	1.5e-65
SQG28001.1|659923_660352_+	phage protein	NA	Q938J8	Temperate_phage	87.9	3.7e-63
SQG28002.1|660354_660987_+	phage protein	NA	Q938J7	Temperate_phage	50.5	4.0e-45
SQG28003.1|660998_661271_+	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQG28004.1|661267_661495_+	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQG28005.1|661503_661620_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.1	7.0e-09
SQG28006.1|661613_662831_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8VVM5	Streptococcus_phage	60.1	1.1e-163
SQG28007.1|662899_663607_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
SQG28008.1|663717_664476_-	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQG28009.1|664715_664898_+	paratox	NA	A3F673	Streptococcus_phage	80.0	1.7e-20
SQG28010.1|665438_667301_+	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	33.8	5.4e-90
SQG28011.1|667600_668536_-	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	45.1	4.6e-66
SQG28012.1|668774_669470_+	phosphoglyceromutase	NA	NA	NA	NA	NA
SQG28013.1|669576_670098_+	3H domain-containing protein	NA	NA	NA	NA	NA
SQG28014.1|670258_670801_+	membrane protein	NA	NA	NA	NA	NA
SQG28015.1|670924_671704_+	formate transporter	NA	NA	NA	NA	NA
SQG28016.1|672501_673098_+	recombination protein	NA	NA	NA	NA	NA
SQG28017.1|673198_674245_+	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SQG28018.1|674443_675811_+	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase	NA	NA	NA	NA	NA
SQG28019.1|675914_676610_+	integral membrane family protein	NA	NA	NA	NA	NA
SQG28020.1|676857_678402_+	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.1	1.1e-35
SQG28021.1|678708_680328_+	DEAD-box ATP-dependent RNA helicase CshA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	1.9e-59
SQG28022.1|680454_682455_+	Kup system potassium uptake protein	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	34.0	5.8e-66
SQG28023.1|682478_682757_-	GIY-YIG catalytic domain-containing protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	7.9e-06
SQG28024.1|682746_683601_-	methyltransferase	NA	NA	NA	NA	NA
SQG28025.1|683640_684381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQG28026.1|684580_685243_+	comE operon 1 domain-containing protein	NA	NA	NA	NA	NA
SQG28027.1|685223_687467_+	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.2	1.8e-55
SQG28028.1|687537_688578_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SQG28029.1|688674_689280_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.2	1.8e-58
SQG28030.1|689446_689680_+	beta-lactamase	NA	NA	NA	NA	NA
SQG28031.1|689904_690495_+	S11 family peptidase	NA	NA	NA	NA	NA
SQG28032.1|690608_691796_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG28033.1|691835_692864_-|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQG28034.1|693065_693770_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQG28035.1|693888_694605_+	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQG28036.1|694899_695862_+	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQG28037.1|695874_697680_+	oligoendopeptidase F	NA	NA	NA	NA	NA
SQG28038.1|698055_699252_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQG28039.1|699353_700025_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	8.3e-09
SQG28040.1|700087_701143_+	foldase protein prsA 1	NA	NA	NA	NA	NA
SQG28041.1|701529_704148_+|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	33.9	5.1e-62
SQG28042.1|704508_704724_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQG28043.1|704720_705482_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQG28044.1|705500_706196_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
706194:706212	attL	TAATAAAAAGCTTCGGATG	NA	NA	NA	NA
SQG28045.1|706289_706661_-|integrase	integrase core domain protein	integrase	U5P429	Shigella_phage	39.2	4.1e-18
SQG28046.1|706664_707120_-|integrase	integrase core domain protein	integrase	U5P429	Shigella_phage	35.5	1.6e-16
707506:707524	attR	CATCCGAAGCTTTTTATTA	NA	NA	NA	NA
>prophage 3
LS483389	Streptococcus pyogenes strain NCTC10879 genome assembly, chromosome: 1	1908146	738921	771661	1908146	tRNA,transposase	Streptococcus_phi-m46.1-like_phage(33.33%)	36	NA	NA
SQG28074.1|738921_740280_+|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	F5CA72	Streptococcus_phi-m46.1-like_phage	99.3	2.7e-256
SQG28075.1|740697_741027_+	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	83.8	3.1e-41
SQG28076.1|740969_741209_+	phosphorylase Pnp/Udp family protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	94.9	2.2e-36
SQG28077.1|741293_741695_+	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQG28078.1|741799_743284_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG28079.1|743658_744879_+	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQG28080.1|744998_745364_-	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQG28081.1|745478_746210_+	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQG28082.1|746258_747065_-|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	49.6	2.4e-63
SQG28083.1|747085_747601_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG28084.1|747842_747971_+	membrane protein	NA	NA	NA	NA	NA
SQG28085.1|748027_749341_+	GTPase ObgE	NA	NA	NA	NA	NA
SQG28086.1|749409_749568_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG28087.1|749572_750268_-	nicotinamide mononucleotide transporter	NA	NA	NA	NA	NA
SQG28088.1|750492_751473_+	beta-glucosidase	NA	NA	NA	NA	NA
SQG28089.1|751483_751894_+	beta-glucosidase	NA	NA	NA	NA	NA
SQG28090.1|751902_752997_+	outer surface protein	NA	NA	NA	NA	NA
SQG28091.1|753102_755097_+	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQG28092.1|755119_755431_+	PTS system cellobiose-specific component IIB	NA	NA	NA	NA	NA
SQG28093.1|755433_755769_+	PTS system cellobiose-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQG28094.1|755765_756215_+	Domain of uncharacterised function (DUF3284)	NA	NA	NA	NA	NA
SQG28095.1|756387_757767_+	PTS system cellobiose-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQG28096.1|757763_757916_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28097.1|758182_758680_-|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	89.9	8.7e-72
SQG28098.1|758660_759386_-|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	92.5	1.8e-129
SQG28099.1|759543_760284_-	glutamine transport ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	42.1	1.2e-35
SQG28100.1|760283_762458_-	glutamine-binding protein/glutamine transpor tsystem permease protein	NA	NA	NA	NA	NA
SQG28101.1|762650_764642_+	excinuclease ABC subunit B	NA	NA	NA	NA	NA
SQG28102.1|764905_765049_+	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA	NA
SQG28103.1|765060_766599_+	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	28.2	6.5e-41
SQG28104.1|766595_767852_+	Protein dltB	NA	NA	NA	NA	NA
SQG28105.1|767869_768109_+	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
SQG28106.1|768101_769352_+	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA	NA
SQG28107.1|769382_770366_+	alpha/beta fold family hydrolase	NA	NA	NA	NA	NA
SQG28108.1|770880_771468_-|transposase	truncated transposase	transposase	Q9MBM9	Staphylococcus_prophage	40.2	1.4e-28
SQG28109.1|771409_771661_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 4
LS483389	Streptococcus pyogenes strain NCTC10879 genome assembly, chromosome: 1	1908146	778464	832376	1908146	protease,tail,terminase,holin,portal,integrase	Streptococcus_phage(58.33%)	70	781830:781889	825960:826055
SQG28115.1|778464_780729_+	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
SQG28116.1|780984_781605_-	phage protein	NA	NA	NA	NA	NA
781830:781889	attL	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGA	NA	NA	NA	NA
SQG28117.1|781967_783056_-|integrase	integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	99.2	6.1e-203
SQG28118.1|783175_783481_-	phage membrane protein	NA	NA	NA	NA	NA
SQG28119.1|783490_784279_-	Phage transcriptional repressor	NA	A0A1S5SD15	Streptococcus_phage	62.6	2.9e-85
SQG28120.1|784453_784600_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28121.1|784596_785079_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28122.1|785152_785392_+	Cro/CI family phage transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	97.5	3.1e-35
SQG28123.1|785403_785667_+	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	98.9	3.6e-40
SQG28124.1|785703_786000_+	phage protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	100.0	2.1e-49
SQG28125.1|785996_786134_+	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	91.1	5.4e-16
SQG28126.1|786149_786464_+	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	95.2	1.2e-50
SQG28127.1|786692_787175_+	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	98.8	7.9e-78
SQG28128.1|787175_787856_+	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQG28129.1|787957_789187_+	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	99.8	1.3e-236
SQG28130.1|789202_789661_+	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	100.0	3.8e-82
SQG28131.1|789672_790476_+	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	97.4	1.5e-150
SQG28132.1|790465_791941_+	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	87.1	2.0e-249
SQG28133.1|792135_792510_+	phage protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	51.7	8.2e-14
SQG28134.1|792544_792865_+	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	94.3	5.5e-51
SQG28135.1|792848_793205_+	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	96.6	4.6e-59
SQG28136.1|793201_793453_+	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	98.8	1.6e-42
SQG28137.1|793446_793731_+	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	97.9	2.7e-49
SQG28138.1|793727_794141_+	phage protein	NA	Q938M1	Temperate_phage	63.8	2.4e-35
SQG28139.1|794137_794422_+	phage protein	NA	A3F628	Streptococcus_phage	91.5	8.6e-40
SQG28140.1|794425_794911_+	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	4.6e-94
SQG28141.1|794914_795142_+	phage protein	NA	A3F630	Streptococcus_phage	76.0	1.9e-26
SQG28142.1|795239_795641_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28143.1|795640_796276_+	phage protein	NA	L0P368	Streptococcus_phage	68.4	2.5e-87
SQG28144.1|796548_796989_+	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	100.0	5.0e-79
SQG28145.1|797760_798675_+	phage protein	NA	NA	NA	NA	NA
SQG28146.1|798693_799155_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28147.1|799292_799670_-	phage protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
SQG28148.1|799721_799907_-	phage protein	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
SQG28149.1|800005_800146_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28150.1|800142_800484_+	Phage endonuclease	NA	J7KH36	Streptococcus_phage	89.8	9.6e-54
SQG28151.1|800651_801119_+|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
SQG28152.1|801133_802888_+|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	96.1	0.0e+00
SQG28153.1|802884_803055_+	phage protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
SQG28154.1|803047_803272_+	phage protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
SQG28155.1|803305_804526_+|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.9	5.8e-186
SQG28156.1|804503_805169_+|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	77.2	5.6e-90
SQG28157.1|805193_806378_+	phage protein	NA	J7KJ82	Streptococcus_phage	76.6	1.5e-162
SQG28158.1|806522_806825_+	phage protein	NA	J7KC36	Streptococcus_phage	88.8	3.0e-43
SQG28159.1|806821_807169_+	phage protein	NA	J7KJ42	Streptococcus_phage	80.9	2.6e-46
SQG28160.1|807165_807543_+	phage protein	NA	J7KDM3	Streptococcus_phage	76.0	1.5e-47
SQG28161.1|807539_807965_+	phage protein	NA	J7KBZ9	Streptococcus_phage	84.4	7.2e-67
SQG28162.1|807980_808589_+|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	71.9	6.7e-74
SQG28163.1|808641_808968_+	phage protein	NA	J7KK85	Streptococcus_phage	75.0	8.3e-39
SQG28164.1|809177_813101_+|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	48.5	1.9e-238
SQG28165.1|813100_813808_+	phage protein	NA	Q938K2	Temperate_phage	69.8	1.1e-91
SQG28166.1|813804_815952_+	Phage endopeptidase	NA	Q938K1	Temperate_phage	93.1	0.0e+00
SQG28167.1|815951_817064_+	phage hyaluronidase	NA	A7J2A8	Streptococcus_phage	73.3	8.4e-123
SQG28168.1|817073_819089_+	Phage infection protein	NA	Q938J9	Temperate_phage	84.2	3.2e-213
SQG28169.1|819100_819532_+	phage protein	NA	Q938J8	Temperate_phage	99.3	5.2e-73
SQG28170.1|819534_820140_+	phage protein	NA	Q938J7	Temperate_phage	98.0	4.8e-88
SQG28171.1|820157_820430_+	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQG28172.1|820426_820654_+|holin	prophage LambdaSa03, holin	holin	A7J2B3	Streptococcus_phage	98.7	7.6e-31
SQG28173.1|820662_820773_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.2	1.8e-09
SQG28174.1|820769_821978_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	85.6	1.5e-210
SQG28175.1|822116_822641_+	phage protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
SQG28176.1|822628_823495_+	phage protein	NA	Q938J2	Temperate_phage	100.0	3.7e-134
SQG28177.1|823798_824512_+	mitogen	NA	Q938J1	Temperate_phage	59.5	9.0e-78
SQG28178.1|824793_825582_+	exotoxin M precursor	NA	Q938J1	Temperate_phage	41.4	9.1e-47
SQG28179.1|825696_825885_+	phage protein	NA	A3F673	Streptococcus_phage	84.7	1.2e-21
SQG28180.1|826475_827090_+	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	1.1e-50
825960:826055	attR	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATTGATGGAGCTGGTGGGAGT	NA	NA	NA	NA
SQG28181.1|827216_828002_-	ABC transporter permease protein	NA	NA	NA	NA	NA
SQG28182.1|828011_828710_-	ABC transporter family protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
SQG28183.1|828709_829081_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQG28184.1|829265_832376_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.9	8.3e-120
>prophage 5
LS483389	Streptococcus pyogenes strain NCTC10879 genome assembly, chromosome: 1	1908146	1010568	1154948	1908146	protease,tail,terminase,tRNA,capsid,portal,integrase	Streptococcus_phage(78.07%)	175	1110419:1110467	1152176:1152224
SQG28365.1|1010568_1011945_+|tRNA	tRNA modification GTPase	tRNA	NA	NA	NA	NA
SQG28366.1|1012012_1013422_-	dipeptidase	NA	NA	NA	NA	NA
SQG28367.1|1013546_1014149_-	NAD(P)H-dependent quinone reductase	NA	NA	NA	NA	NA
SQG28368.1|1014333_1016130_-	excinuclease ABC subunit C	NA	NA	NA	NA	NA
SQG28369.1|1016231_1017629_-	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SQG28370.1|1017743_1018790_-	bacterial extracellular solute-binding family protein	NA	NA	NA	NA	NA
SQG28371.1|1018783_1019572_-	response regulator	NA	NA	NA	NA	NA
SQG28372.1|1019575_1021225_-	two-component sensor kinase	NA	Q9EYF3	Enterobacteria_phage	33.3	1.8e-12
SQG28373.1|1021360_1022188_-	phospotransferase system (PTS), enzyme II component D	NA	NA	NA	NA	NA
SQG28374.1|1022184_1022994_-	PTS system, mannose-specific IIC component	NA	NA	NA	NA	NA
SQG28375.1|1023010_1023502_-	PTS system mannose/fructose family transporter subunit IIB	NA	NA	NA	NA	NA
SQG28376.1|1023520_1023946_-	PTS system mannose-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQG28377.1|1024152_1025172_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQG28378.1|1025301_1025739_-	methionine sulfoxide reductase B	NA	NA	NA	NA	NA
SQG28379.1|1025924_1027265_-	Collagen-like surface protein	NA	NA	NA	NA	NA
SQG28380.1|1027542_1029375_-	GTP-binding protein LepA	NA	A0A2K9L2P9	Tupanvirus	41.0	2.2e-19
SQG28381.1|1029708_1029906_-	nucleoside diphosphate kinase protein Ndk	NA	NA	NA	NA	NA
SQG28382.1|1030128_1030311_-	phage protein	NA	A3F673	Streptococcus_phage	71.7	1.0e-17
SQG28383.1|1030509_1030719_-	repressor C1	NA	A3F668	Streptococcus_phage	100.0	1.2e-30
SQG28384.1|1030872_1031019_+	Uncharacterised protein	NA	A3F667	Streptococcus_phage	97.9	4.0e-17
SQG28385.1|1031159_1031411_+	Uncharacterised protein	NA	A3F666	Streptococcus_phage	96.4	2.8e-42
SQG28386.1|1031674_1031914_+	Phage protein	NA	NA	NA	NA	NA
SQG28387.1|1031971_1032328_+	phage protein	NA	NA	NA	NA	NA
SQG28388.1|1032444_1033650_-	N-acetylmuramoyl-L-alanine amidase	NA	A7J2B5	Streptococcus_phage	82.5	3.2e-200
SQG28389.1|1033637_1033760_-	phage membrane protein	NA	NA	NA	NA	NA
SQG28390.1|1033762_1033948_-	phage protein	NA	Q938J5	Temperate_phage	98.4	6.6e-25
SQG28391.1|1033944_1034244_-	phage protein	NA	Q938J6	Temperate_phage	93.8	1.9e-42
SQG28392.1|1034254_1034872_-	phage protein	NA	Q938J7	Temperate_phage	87.8	1.0e-77
SQG28393.1|1034874_1035303_-	phage protein	NA	Q938J8	Temperate_phage	78.6	1.9e-54
SQG28394.1|1035314_1037330_-	Phage infection protein	NA	Q938J9	Temperate_phage	73.2	2.4e-176
SQG28395.1|1037344_1038349_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	63.0	1.4e-108
SQG28396.1|1038345_1040397_-	phage protein	NA	A3F656	Streptococcus_phage	84.0	0.0e+00
SQG28397.1|1040393_1041164_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	87.1	7.8e-128
SQG28398.1|1041176_1045277_-|tail	tail protein	tail	A3F654	Streptococcus_phage	68.5	0.0e+00
SQG28399.1|1045320_1045419_-	Uncharacterised protein	NA	A3F653	Streptococcus_phage	96.9	7.0e-10
SQG28400.1|1045502_1045805_-	Uncharacterised protein	NA	A3F652	Streptococcus_phage	97.0	3.1e-48
SQG28401.1|1045897_1046482_-|tail	major tail protein - phage associated	tail	A3F651	Streptococcus_phage	90.2	1.6e-93
SQG28402.1|1046493_1046874_-	Uncharacterised protein	NA	A3F650	Streptococcus_phage	97.6	2.4e-61
SQG28403.1|1046866_1047265_-	Uncharacterised protein	NA	A3F649	Streptococcus_phage	100.0	2.9e-70
SQG28404.1|1047266_1047629_-	Uncharacterised protein	NA	A3F648	Streptococcus_phage	96.7	2.1e-59
SQG28405.1|1047621_1047930_-	Uncharacterised protein	NA	A3F647	Streptococcus_phage	92.2	8.1e-44
SQG28406.1|1047929_1048103_-	Uncharacterised protein	NA	A3F646	Streptococcus_phage	93.0	1.1e-21
SQG28407.1|1048113_1049247_-|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A3F645	Streptococcus_phage	95.8	3.9e-200
SQG28408.1|1049263_1050070_-	scaffolding protein	NA	A3F644	Streptococcus_phage	98.9	1.2e-147
SQG28409.1|1050050_1051238_-|portal	HK97 family phage portal protein	portal	A3F643	Streptococcus_phage	96.5	3.3e-218
SQG28410.1|1051390_1051603_-	Uncharacterised protein	NA	A3F642	Streptococcus_phage	97.1	1.4e-34
SQG28411.1|1051605_1053336_-|terminase	putative phage terminase, large subunit	terminase	A3F641	Streptococcus_phage	97.0	0.0e+00
SQG28412.1|1053348_1053666_-	Uncharacterised protein	NA	A3F640	Streptococcus_phage	99.0	3.9e-49
SQG28413.1|1053806_1054112_-	HNH endonuclease	NA	A3F639	Streptococcus_phage	96.0	3.8e-54
SQG28414.1|1054104_1054491_-	Uncharacterised protein	NA	A3F638	Streptococcus_phage	93.0	1.4e-64
SQG28415.1|1054516_1054720_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28416.1|1054777_1055071_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28417.1|1055224_1055800_-	phage associated recombinase	NA	A3F636	Streptococcus_phage	99.5	7.4e-107
SQG28418.1|1055959_1056361_-	phage 31 late promoter transcriptional activator	NA	A3F635	Streptococcus_phage	100.0	2.7e-71
SQG28419.1|1056375_1057203_-	B-cell receptor associated protein-like protein	NA	A3F634	Streptococcus_phage	100.0	1.3e-117
SQG28420.1|1057205_1057544_-	immunity repressor protein - phage associated	NA	A3F633	Streptococcus_phage	92.9	1.1e-54
SQG28421.1|1057540_1057822_-	Uncharacterised protein	NA	A3F632	Streptococcus_phage	92.2	4.5e-33
SQG28422.1|1057836_1058022_-	single strand binding protein - phage associated	NA	A3F624	Streptococcus_phage	91.8	6.6e-25
SQG28423.1|1058018_1058228_-	single strand binding protein	NA	M1NRI2	Streptococcus_phage	79.4	4.0e-26
SQG28424.1|1058224_1058446_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28425.1|1058442_1058928_-	phage protein	NA	A0A1S5S9L5	Streptococcus_phage	41.4	5.6e-23
SQG28426.1|1058932_1059577_-	phage protein	NA	L0P368	Streptococcus_phage	65.7	4.6e-81
SQG28427.1|1059566_1060010_-	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	82.9	3.5e-72
SQG28428.1|1060054_1060324_-	phage membrane protein	NA	A7J287	Streptococcus_phage	80.9	1.4e-28
SQG28429.1|1060320_1060491_-	phage protein	NA	Q938M0	Temperate_phage	55.4	2.7e-09
SQG28430.1|1060487_1060931_-	phage protein	NA	A0A1C9LX52	Streptococcus_phage	55.0	1.6e-32
SQG28431.1|1060947_1061073_-	phage protein	NA	NA	NA	NA	NA
SQG28432.1|1061086_1061314_-	phage protein	NA	C5J991	Streptococcus_phage	49.3	9.3e-13
SQG28433.1|1061313_1062126_-	phage DNA replication protein	NA	A0A1P8VVV9	Streptococcus_phage	77.6	6.8e-122
SQG28434.1|1062125_1062887_-	dnaD and phage-associated domain protein	NA	A0A220GFI5	Streptococcus_phage	56.1	9.1e-28
SQG28435.1|1062879_1064220_-	DNA polymerase III delta prime subunit	NA	A0A1P8VVQ6	Streptococcus_phage	84.7	7.1e-209
SQG28436.1|1064206_1064395_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28437.1|1064515_1064707_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28438.1|1064799_1065057_-	phage protein	NA	A3F618	Streptococcus_phage	98.8	5.4e-41
SQG28439.1|1065130_1065850_-	antirepressor - phage associated	NA	A3F617	Streptococcus_phage	78.7	4.6e-106
SQG28440.1|1065901_1066402_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28441.1|1066521_1066656_-	Uncharacterised protein	NA	A3F616	Streptococcus_phage	95.5	2.4e-16
SQG28442.1|1066729_1066942_-	phage protein	NA	M1Q1B4	Streptococcus_phage	52.9	1.7e-13
SQG28443.1|1066976_1067252_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28444.1|1067540_1067891_+	repressor - phage associated	NA	A0A1S5SAD3	Streptococcus_phage	63.5	1.2e-35
SQG28445.1|1067894_1068287_+	phage protein	NA	A3F612	Streptococcus_phage	68.7	2.2e-38
SQG28446.1|1068297_1069038_+	phage protein	NA	A3F611	Streptococcus_phage	100.0	1.6e-130
SQG28447.1|1069348_1070545_+|integrase	phage associated integrase	integrase	A3F610	Streptococcus_phage	99.0	3.9e-227
SQG28448.1|1070752_1071415_-	CRISPR-associated family protein	NA	NA	NA	NA	NA
SQG28449.1|1071404_1071716_-	CRISPR-associated Cas2 family protein	NA	NA	NA	NA	NA
SQG28450.1|1071742_1072612_-	cytoplasmic protein	NA	NA	NA	NA	NA
SQG28451.1|1072611_1076715_-	CRISPR-associated protein, Csn1 family	NA	NA	NA	NA	NA
SQG28452.1|1077160_1077793_-	membrane protein	NA	NA	NA	NA	NA
SQG28453.1|1077792_1078557_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
SQG28454.1|1078556_1079309_-	oleoyl-[acyl-carrier-protein] hydrolase	NA	NA	NA	NA	NA
SQG28455.1|1079318_1080515_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
SQG28456.1|1080511_1081216_-	acetyltransferase GNAT Family	NA	NA	NA	NA	NA
SQG28457.1|1081277_1082633_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
SQG28458.1|1082686_1083643_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG28459.1|1083639_1084491_-	disA bacterial checkpoint controller nucleotide-binding family protein	NA	NA	NA	NA	NA
SQG28460.1|1084603_1085941_+	UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
SQG28461.1|1085940_1086732_+	cobyric acid synthase	NA	NA	NA	NA	NA
SQG28462.1|1086840_1087830_-	lipoate-protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	25.2	8.2e-13
SQG28463.1|1088062_1090480_+	Hyaluronate lyase precursor	NA	NA	NA	NA	NA
SQG28464.1|1091153_1092917_-	dihydrolipoamide dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.5	1.2e-33
SQG28465.1|1093243_1094653_-	branched-chain alpha-keto acid dehydrogenase E2 subunit	NA	NA	NA	NA	NA
SQG28466.1|1094837_1095839_-	TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit	NA	NA	NA	NA	NA
SQG28467.1|1095894_1096863_-	Pyruvate dehydrogenase E1 component alpha subunit	NA	NA	NA	NA	NA
SQG28468.1|1097147_1099055_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.9	3.4e-55
SQG28469.1|1099100_1099427_-|protease	protease	protease	NA	NA	NA	NA
SQG28470.1|1099456_1100242_-	acetyl esterase	NA	NA	NA	NA	NA
SQG28471.1|1100374_1102036_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
SQG28472.1|1102239_1102998_-	spermidine/putrescine import ATP-binding protein potA	NA	A0A1V0SE00	Indivirus	28.3	5.9e-11
SQG28473.1|1102994_1103864_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SQG28474.1|1104039_1104204_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28475.1|1104208_1105207_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQG28476.1|1105560_1107213_+	fibronectin-binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	41.0	1.7e-07
SQG28477.1|1107271_1108519_-	Tetratricopeptide repeat family protein	NA	NA	NA	NA	NA
SQG28478.1|1108508_1109690_-	permease	NA	NA	NA	NA	NA
SQG28479.1|1109747_1110224_-	7,8-dihydro-8-oxoguanine-triphosphatase	NA	NA	NA	NA	NA
1110419:1110467	attL	TTGATATGACAAGGTTCTTTAATGTTTTATTTAATCACTTCTTGAGTTT	NA	NA	NA	NA
SQG28480.1|1110827_1111538_-	exotoxin H precursor	NA	NA	NA	NA	NA
SQG28481.1|1111563_1112343_-	exotoxin I precursor	NA	A0A075M4C7	Staphylococcus_phage	32.7	9.3e-28
SQG28482.1|1112514_1113849_-	Phage lysin, N-acetylmuramoyl-L-alanine amidase	NA	Q5MY96	Streptococcus_phage	92.6	1.4e-246
SQG28483.1|1113849_1113957_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.1	5.5e-08
SQG28484.1|1113960_1114146_-	phage protein	NA	Q938J5	Temperate_phage	95.1	1.9e-24
SQG28485.1|1114142_1114439_-	phage protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
SQG28486.1|1114448_1115060_-	phage protein	NA	A7J2B1	Streptococcus_phage	89.7	1.8e-82
SQG28487.1|1115062_1115224_-	phage protein	NA	NA	NA	NA	NA
SQG28488.1|1115232_1117251_-	Phage infection protein	NA	Q938J9	Temperate_phage	53.1	4.6e-119
SQG28489.1|1117263_1118385_-	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	72.2	1.8e-128
SQG28490.1|1118381_1120361_-	phage protein	NA	A7J2A7	Streptococcus_phage	93.6	0.0e+00
SQG28491.1|1120370_1121213_-	phage protein	NA	A7J2A6	Streptococcus_phage	97.9	8.8e-157
SQG28492.1|1121224_1125607_-|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	75.2	2.5e-226
SQG28493.1|1125621_1125855_-	phage protein	NA	A7J2A4	Streptococcus_phage	98.7	1.3e-33
SQG28494.1|1125929_1126385_-	phage protein	NA	A7J2A3	Streptococcus_phage	99.3	5.3e-76
SQG28495.1|1126438_1127038_-|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
SQG28496.1|1127049_1127409_-	phage protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
SQG28497.1|1127412_1127757_-	phage protein	NA	A7J2A0	Streptococcus_phage	97.4	1.1e-54
SQG28498.1|1127753_1128032_-	phage protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
SQG28499.1|1128042_1128399_-	phage protein	NA	A7J298	Streptococcus_phage	99.2	7.9e-59
SQG28500.1|1128410_1129298_-	phage protein	NA	A7J297	Streptococcus_phage	100.0	2.1e-161
SQG28501.1|1129310_1129880_-	phage protein	NA	A7J296	Streptococcus_phage	100.0	1.9e-83
SQG28502.1|1130041_1130308_-	putative phage associated protein	NA	Q938K9	Temperate_phage	96.6	2.9e-37
SQG28503.1|1130312_1130429_-	phage membrane protein	NA	A7J294	Streptococcus_phage	100.0	2.0e-08
SQG28504.1|1130528_1131977_-	phage protein	NA	A7J293	Streptococcus_phage	99.4	1.3e-277
SQG28505.1|1131936_1133469_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.8	4.5e-292
SQG28506.1|1133484_1134762_-|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	99.5	6.9e-246
SQG28507.1|1134751_1135204_-|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
SQG28508.1|1135293_1135710_-	phage protein	NA	A7J289	Streptococcus_phage	98.6	9.5e-72
SQG28509.1|1135693_1135840_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28510.1|1135842_1136115_-	phage membrane protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
SQG28511.1|1136107_1136278_-	phage protein	NA	A7J285	Streptococcus_phage	92.3	9.0e-21
SQG28512.1|1136278_1137601_-	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.5	1.1e-251
SQG28513.1|1137597_1137873_-	phage protein	NA	A7J283	Streptococcus_phage	98.9	3.5e-46
SQG28514.1|1138258_1140643_-	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	94.6	8.2e-277
SQG28515.1|1140647_1142570_-	phage DNA polymerase	NA	A7J280	Streptococcus_phage	98.3	0.0e+00
SQG28516.1|1142612_1143170_-	phage protein	NA	D2J040	Enterococcus_phage	59.0	8.6e-52
SQG28517.1|1143184_1144342_-	phage protein	NA	A7J278	Streptococcus_phage	97.9	3.0e-216
SQG28518.1|1144341_1144641_-	phage protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
SQG28519.1|1144729_1144933_-	phage protein	NA	A7J276	Streptococcus_phage	98.5	1.6e-32
SQG28520.1|1145276_1145426_-	phage protein	NA	A7J275	Streptococcus_phage	90.0	3.8e-15
SQG28521.1|1145422_1145797_-	phage protein	NA	A7J274	Streptococcus_phage	82.9	2.4e-50
SQG28522.1|1145837_1146023_-	phage protein	NA	NA	NA	NA	NA
SQG28523.1|1146015_1146186_-	phage protein	NA	A7J273	Streptococcus_phage	87.5	2.9e-19
SQG28524.1|1146187_1146499_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.6	1.4e-43
SQG28525.1|1146605_1146821_+	Uncharacterised protein	NA	A0A1S5SA41	Streptococcus_phage	61.4	1.9e-15
SQG28526.1|1146794_1147043_-	Uncharacterised protein	NA	A0A141E1M0	Streptococcus_phage	69.5	1.6e-26
SQG28527.1|1147122_1147332_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28528.1|1147473_1147734_+	Uncharacterised protein	NA	M1PS67	Streptococcus_phage	70.9	5.8e-27
SQG28529.1|1147662_1147821_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28530.1|1147832_1148486_-	prophage LambdaSa1, antirepressor	NA	A0A2H4IZX7	uncultured_Caudovirales_phage	59.7	4.4e-71
SQG28531.1|1148497_1148689_-	phage protein	NA	A7J270	Streptococcus_phage	92.1	4.0e-25
SQG28532.1|1148995_1149145_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28533.1|1149842_1150190_+	Cro/CI family phage transcriptional regulator	NA	Q7Y4M0	Streptococcus_phage	69.2	1.8e-39
SQG28534.1|1150193_1150574_+	peptidase	NA	A0A1S5SFH2	Streptococcus_phage	61.1	8.0e-41
SQG28535.1|1150585_1150852_+	phage protein	NA	NA	NA	NA	NA
SQG28536.1|1150979_1152119_+|integrase	phage integrase	integrase	A1EAB7	Streptococcus_phage	56.3	1.2e-119
SQG28537.1|1152201_1153242_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.1e-68
1152176:1152224	attR	TTGATATGACAAGGTTCTTTAATGTTTTATTTAATCACTTCTTGAGTTT	NA	NA	NA	NA
SQG28538.1|1153485_1154079_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
SQG28539.1|1154078_1154948_-	glucose-1-phosphate thymidyl transferase	NA	K7QKA7	Escherichia_phage	64.6	2.4e-101
>prophage 6
LS483389	Streptococcus pyogenes strain NCTC10879 genome assembly, chromosome: 1	1908146	1165627	1220729	1908146	head,tRNA,protease,transposase	Bacillus_virus(23.08%)	52	NA	NA
SQG28551.1|1165627_1166527_-|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQG28552.1|1166660_1166837_+	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQG28553.1|1166954_1167863_-	exfoliative toxin	NA	NA	NA	NA	NA
SQG28554.1|1168099_1168519_-	glutathione S-transferase	NA	NA	NA	NA	NA
SQG28555.1|1168829_1169816_-	Rhodanese domain protein UPF0176, Firmicutes subgroup	NA	NA	NA	NA	NA
SQG28556.1|1170016_1170319_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28557.1|1170865_1172071_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQG28558.1|1172461_1172692_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQG28559.1|1172755_1173778_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQG28560.1|1173900_1176324_-	topoisomerase IV subunit	NA	G3M9Z5	Bacillus_virus	33.3	1.6e-97
SQG28561.1|1176450_1178400_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	41.8	1.2e-121
SQG28562.1|1178534_1179176_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQG28563.1|1179236_1180505_-	dihydroorotase	NA	NA	NA	NA	NA
SQG28564.1|1180636_1181290_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	40.1	2.3e-40
SQG28565.1|1181422_1182073_-	amino-acid ABC transporter permease yckA	NA	NA	NA	NA	NA
SQG28566.1|1182101_1182965_-	cystine-binding protein	NA	NA	NA	NA	NA
SQG28567.1|1183082_1184537_-	amidase	NA	NA	NA	NA	NA
SQG28568.1|1184733_1185363_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQG28569.1|1185420_1186113_-	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQG28570.1|1186389_1186926_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28571.1|1187147_1188053_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQG28572.1|1188132_1188921_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
SQG28573.1|1188913_1189684_-	Purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQG28574.1|1190211_1191021_-	purine nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	42.2	8.7e-53
SQG28575.1|1191004_1191445_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	55.3	8.9e-36
SQG28576.1|1191460_1192672_-	phosphopentomutase	NA	NA	NA	NA	NA
SQG28577.1|1192748_1193432_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQG28578.1|1193809_1195909_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.0	9.6e-120
SQG28579.1|1195966_1196710_-	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQG28580.1|1196857_1197457_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQG28581.1|1197466_1198696_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
SQG28582.1|1198825_1198996_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG28583.1|1199015_1199513_-	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQG28584.1|1199592_1200432_-	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQG28585.1|1200640_1201816_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQG28586.1|1201802_1203080_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQG28587.1|1203309_1204299_-	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQG28588.1|1204285_1205299_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQG28589.1|1205291_1206236_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQG28590.1|1206217_1207096_-	mevalonate kinase	NA	NA	NA	NA	NA
SQG28591.1|1207388_1208621_-	two component system histidine kinase	NA	NA	NA	NA	NA
SQG28592.1|1208629_1209298_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQG28593.1|1209300_1209951_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQG28594.1|1210170_1212183_+	5'-nucleotidase	NA	NA	NA	NA	NA
SQG28595.1|1212264_1212675_-	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQG28596.1|1213566_1215444_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.7	3.9e-64
SQG28597.1|1215440_1216649_-|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	5.3e-38
SQG28598.1|1216773_1217622_-	degV family protein	NA	NA	NA	NA	NA
SQG28599.1|1217621_1218002_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG28600.1|1218229_1218406_-	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQG28601.1|1218908_1219928_+|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQG28602.1|1220609_1220729_+|transposase	degenerate transposase	transposase	NA	NA	NA	NA
>prophage 7
LS483389	Streptococcus pyogenes strain NCTC10879 genome assembly, chromosome: 1	1908146	1257096	1267699	1908146		Streptococcus_phage(57.14%)	9	NA	NA
SQG28636.1|1257096_1258239_-	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
SQG28637.1|1258473_1258914_+	membrane protein	NA	NA	NA	NA	NA
SQG28638.1|1258943_1260212_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQG28639.1|1260299_1261652_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	1.7e-29
SQG28640.1|1261872_1262214_-	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	3.4e-19
SQG28641.1|1262274_1263441_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	33.6	3.7e-36
SQG28642.1|1263534_1264221_-	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQG28643.1|1264217_1265381_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQG28644.1|1265488_1267699_+	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
>prophage 8
LS483389	Streptococcus pyogenes strain NCTC10879 genome assembly, chromosome: 1	1908146	1438215	1444865	1908146	portal	Streptococcus_phage(66.67%)	14	NA	NA
SQG28791.1|1438215_1439040_-	asparagine ligase A	NA	M1PB22	Moumouvirus	33.1	6.2e-22
SQG28792.1|1439063_1439402_-	huntington interacting protein HYPE	NA	NA	NA	NA	NA
SQG28793.1|1439818_1440133_-	prophage minor structural protein	NA	Q6DMT0	Streptococcus_phage	64.5	4.9e-20
SQG28794.1|1440198_1440651_-|portal	portal protein	portal	E4ZFM3	Streptococcus_phage	84.9	4.4e-62
SQG28795.1|1440755_1441028_-	cytoplasmic protein	NA	E4ZFM1	Streptococcus_phage	48.1	1.2e-06
SQG28796.1|1441046_1441352_-	prophage LambdaSa04, RelE/ParE family protein	NA	NA	NA	NA	NA
SQG28797.1|1441351_1441654_-	Plasmid stabilization system antitoxin protein	NA	NA	NA	NA	NA
SQG28798.1|1441708_1441867_-	prophage LambdaSa04	NA	M1PSF2	Streptococcus_phage	84.6	6.7e-18
SQG28799.1|1441909_1442794_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28800.1|1442793_1443018_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28801.1|1443008_1443737_+	Chromosome segregation ATPase	NA	NA	NA	NA	NA
SQG28802.1|1443821_1444379_+	chromosome segregation ATPase	NA	NA	NA	NA	NA
SQG28803.1|1444375_1444666_+	Chromosome segregation ATPase	NA	NA	NA	NA	NA
SQG28804.1|1444655_1444865_+	vanUG2	NA	A0A2K5B263	Erysipelothrix_phage	61.5	9.8e-17
>prophage 9
LS483389	Streptococcus pyogenes strain NCTC10879 genome assembly, chromosome: 1	1908146	1470628	1499042	1908146	bacteriocin,tRNA,transposase	Tupanvirus(14.29%)	34	NA	NA
SQG28826.1|1470628_1472572_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.7	1.0e-120
SQG28827.1|1472993_1474328_-	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
SQG28828.1|1474329_1475328_-	glycosyltransferase	NA	NA	NA	NA	NA
SQG28829.1|1475458_1476460_-	Catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
SQG28830.1|1476633_1477719_+	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQG28831.1|1477767_1478433_+	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA	NA
SQG28832.1|1478443_1478821_+	bleomycin resistance protein	NA	NA	NA	NA	NA
SQG28833.1|1478965_1479892_+	glucosyl transferase family 2	NA	V5USA4	Oenococcus_phage	47.5	1.5e-77
SQG28834.1|1480102_1480786_+	membrane protein	NA	NA	NA	NA	NA
SQG28835.1|1480785_1481712_+	membrane protein	NA	NA	NA	NA	NA
SQG28836.1|1481761_1482409_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQG28837.1|1482526_1483246_-	glutamine cyclotransferase	NA	NA	NA	NA	NA
SQG28838.1|1483251_1483719_-	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	57.0	7.5e-41
SQG28839.1|1483751_1486052_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.8	2.3e-90
SQG28840.1|1486148_1486385_-	preprotein translocase subunit	NA	NA	NA	NA	NA
SQG28841.1|1486573_1487767_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQG28842.1|1487888_1489391_-	ATPase	NA	A0A248XCZ8	Klebsiella_phage	41.0	2.6e-74
SQG28843.1|1489580_1490174_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQG28844.1|1490170_1490998_-	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	5.1e-16
SQG28845.1|1491169_1492036_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG28846.1|1492366_1492585_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28847.1|1493106_1493376_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28848.1|1493723_1494155_-	histidine kinase	NA	NA	NA	NA	NA
SQG28849.1|1494199_1495267_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28850.1|1495520_1495922_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28851.1|1496115_1496397_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28852.1|1496446_1496641_-|bacteriocin	bacteriocin-associated protein	bacteriocin	NA	NA	NA	NA
SQG28853.1|1496725_1496935_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG28854.1|1496935_1497136_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG28855.1|1497148_1497376_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQG28856.1|1497693_1498116_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG28857.1|1498112_1498262_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQG28858.1|1498599_1498782_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQG28859.1|1498796_1499042_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
>prophage 10
LS483389	Streptococcus pyogenes strain NCTC10879 genome assembly, chromosome: 1	1908146	1537042	1546560	1908146	tRNA,transposase	Streptococcus_phage(33.33%)	8	NA	NA
SQG28901.1|1537042_1537768_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	92.1	1.1e-128
SQG28902.1|1537748_1538246_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	89.9	8.7e-72
SQG28903.1|1538467_1539055_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG28904.1|1539513_1540266_+	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQG28905.1|1540427_1542608_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.2	2.8e-170
SQG28906.1|1542574_1543063_-	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
SQG28907.1|1543066_1544080_-	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.7	2.5e-97
SQG28908.1|1544562_1546560_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.0	1.0e-86
>prophage 11
LS483389	Streptococcus pyogenes strain NCTC10879 genome assembly, chromosome: 1	1908146	1554897	1560932	1908146		Streptococcus_phage(100.0%)	8	NA	NA
SQG28913.1|1554897_1555725_+	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.5	2.9e-128
SQG28914.1|1555798_1556155_-	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	3.1e-39
SQG28915.1|1556454_1557084_+	copper homeostasis protein	NA	NA	NA	NA	NA
SQG28916.1|1557130_1557523_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG28917.1|1557549_1558413_-	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	3.8e-115
SQG28918.1|1558417_1558741_-	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQG28919.1|1559403_1560279_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	48.3	6.3e-73
SQG28920.1|1560296_1560932_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
>prophage 12
LS483389	Streptococcus pyogenes strain NCTC10879 genome assembly, chromosome: 1	1908146	1856671	1867696	1908146		Streptococcus_phage(76.92%)	16	NA	NA
SQG29183.1|1856671_1857103_-	phage protein	NA	A0A1S5SFS8	Streptococcus_phage	26.8	3.6e-05
SQG29184.1|1857601_1858069_-	Uncharacterised protein	NA	A0A1X9I5V2	Streptococcus_phage	51.0	1.3e-40
SQG29185.1|1858198_1858729_-	Uncharacterised protein	NA	A0A1X9I5U4	Streptococcus_phage	55.9	2.5e-48
SQG29186.1|1858749_1858923_-	Uncharacterised protein	NA	A0A1X9I5U0	Streptococcus_phage	78.9	1.8e-16
SQG29187.1|1859259_1860762_-	phage replication protein	NA	Q9AZI5	Lactococcus_phage	37.2	2.0e-63
SQG29188.1|1860781_1861651_-	Phage protein	NA	A0A1X9I6L2	Streptococcus_phage	75.4	1.8e-125
SQG29189.1|1861785_1862067_-	phage protein	NA	A0A1X9I5U9	Streptococcus_phage	75.6	2.5e-31
SQG29190.1|1862059_1862392_-	phage protein	NA	A0A1X9I5Z6	Streptococcus_phage	46.5	2.5e-14
SQG29191.1|1862403_1862604_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG29192.1|1862596_1862806_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG29193.1|1862802_1863231_-	Uncharacterised protein	NA	A0A1X9I5T7	Streptococcus_phage	77.5	7.8e-61
SQG29194.1|1863605_1863794_-	helix-turn-helix family protein	NA	A0A141E205	Streptococcus_phage	42.6	1.2e-05
SQG29195.1|1863983_1864604_+	repressor protein	NA	A0A097PBE5	Streptococcus_pyogenes_phage	53.8	1.1e-18
SQG29196.1|1864978_1865983_+	Uncharacterised protein	NA	Q331X4	Clostridium_botulinum_C_phage	28.1	6.8e-15
SQG29197.1|1865982_1866435_+	Death on curing protein	NA	NA	NA	NA	NA
SQG29198.1|1866523_1867696_+	Integrase/recombinase, phage associated	NA	A0A1X9I5Y5	Streptococcus_phage	74.7	1.6e-164
