The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483391	Streptococcus pyogenes strain NCTC8320 genome assembly, chromosome: 1	1863040	36584	48947	1863040		Synechococcus_phage(28.57%)	8	NA	NA
SQG41860.1|36584_40358_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.0	7.9e-40
SQG41861.1|40518_41973_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.3	3.7e-54
SQG41862.1|42000_43023_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.4	5.2e-63
SQG41863.1|43190_43745_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
SQG41864.1|43928_45476_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	51.8	9.8e-45
SQG41865.1|45534_46659_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQG41866.1|46911_48177_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQG41867.1|48335_48947_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.1e-18
>prophage 2
LS483391	Streptococcus pyogenes strain NCTC8320 genome assembly, chromosome: 1	1863040	329359	335393	1863040		Streptococcus_phage(100.0%)	9	NA	NA
SQG42140.1|329359_329995_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	3.5e-65
SQG42141.1|330012_330888_+	DNA polymerase III subunit delta	NA	M1NSC1	Streptococcus_phage	41.4	6.9e-56
SQG42142.1|330906_331146_+	Tpl protein	NA	NA	NA	NA	NA
SQG42143.1|331550_331874_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	58.5	5.0e-28
SQG42144.1|331878_332742_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.3	2.7e-113
SQG42145.1|332768_333161_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG42146.1|333207_333837_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQG42147.1|334135_334492_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.1e-39
SQG42148.1|334565_335393_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	78.8	7.1e-127
>prophage 3
LS483391	Streptococcus pyogenes strain NCTC8320 genome assembly, chromosome: 1	1863040	343737	386951	1863040	protease,tRNA,transposase,bacteriocin,integrase	Bacillus_phage(23.08%)	50	333064:333078	387917:387931
333064:333078	attL	TTGGCTTGTTTTTCC	NA	NA	NA	NA
SQG42152.1|343737_345735_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.0	1.7e-86
SQG42153.1|346228_347242_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	52.7	9.4e-97
SQG42154.1|347245_347734_+	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
SQG42155.1|347700_349881_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	42.9	5.2e-169
SQG42156.1|350112_350838_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQG42157.1|351295_351646_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG42158.1|352060_352312_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQG42159.1|352405_352906_-	phage protein	NA	NA	NA	NA	NA
SQG42160.1|353267_353504_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQG42161.1|353496_354195_+	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.6	7.1e-11
SQG42162.1|354270_355230_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQG42163.1|355562_356900_+	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQG42164.1|357072_358455_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.0	8.5e-32
SQG42165.1|358488_359043_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQG42166.1|359042_359294_+	membrane protein	NA	NA	NA	NA	NA
SQG42167.1|359313_360009_+	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQG42168.1|360159_360501_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG42169.1|360601_361249_-	metalloregulator ScaR	NA	NA	NA	NA	NA
SQG42170.1|361394_362327_+	manganese-binding protein	NA	NA	NA	NA	NA
SQG42171.1|362390_363116_+	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.1	4.0e-17
SQG42172.1|363116_363971_+	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQG42173.1|364118_364925_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
SQG42174.1|365141_367547_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
SQG42175.1|367616_367970_-	integral membrane protein	NA	NA	NA	NA	NA
SQG42176.1|368213_368639_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQG42177.1|368744_369434_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQG42178.1|369755_370484_+	uridylate kinase	NA	NA	NA	NA	NA
SQG42179.1|370512_371070_+	ribosome recycling factor	NA	NA	NA	NA	NA
SQG42180.1|371178_372036_+	s1 RNA binding domain	NA	NA	NA	NA	NA
SQG42181.1|372108_372618_+	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQG42182.1|372614_372830_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG42183.1|372985_374167_+	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	39.6	2.1e-15
SQG42184.1|374481_376254_+	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQG42185.1|376412_377465_+	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQG42186.1|377510_378086_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQG42187.1|378244_378742_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQG42188.1|378722_379130_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQG42189.1|379249_380146_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQG42190.1|380165_380642_+	phosphohydrolase	NA	NA	NA	NA	NA
SQG42191.1|380947_381202_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG42192.1|381746_381977_+	truncated SilB	NA	NA	NA	NA	NA
SQG42193.1|382472_383174_-|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
SQG42194.1|383278_383515_-|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
SQG42195.1|383812_384037_+	blpU	NA	NA	NA	NA	NA
SQG42196.1|384014_384191_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG42197.1|384276_384504_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG42198.1|385404_385635_+|bacteriocin	bacteriocin class II with double-glycine leader peptide	bacteriocin	NA	NA	NA	NA
SQG42199.1|385683_386001_+	role in replication	NA	NA	NA	NA	NA
SQG42200.1|386381_386735_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	36.2	4.1e-07
SQG42201.1|386780_386951_+|integrase	integrase	integrase	A0A1P8CWQ3	Bacillus_phage	46.3	2.6e-07
387917:387931	attR	GGAAAAACAAGCCAA	NA	NA	NA	NA
>prophage 4
LS483391	Streptococcus pyogenes strain NCTC8320 genome assembly, chromosome: 1	1863040	534185	603452	1863040	tail,capsid,holin,protease,tRNA,terminase,transposase,portal,bacteriocin,integrase	Streptococcus_phage(58.06%)	88	538855:538873	579907:579925
SQG42469.1|534185_535532_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.1e-55
SQG42473.1|535945_536836_+	P-loop ATPase protein family protein	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
SQG42475.1|536832_537810_+	transporter	NA	A1IMD5	Streptococcus_phage	74.2	1.2e-138
SQG42477.1|537806_538718_+	sporulation Regulator WhiA C terminal domain-containing protein	NA	Q7AWZ3	Streptococcus_phage	64.4	2.9e-105
538855:538873	attL	CATGTACAACTATACTCGT	NA	NA	NA	NA
SQG42481.1|538894_540310_-|integrase	integrase	integrase	A5GZ62	Lactococcus_phage	47.2	1.4e-109
SQG42483.1|540432_540738_-	phage membrane protein	NA	NA	NA	NA	NA
SQG42492.1|540747_541512_-	phage repressor protein	NA	E8ZDN4	Streptococcus_phage	64.5	2.0e-83
SQG42494.1|541871_542030_+	phage membrane protein	NA	J7KH24	Streptococcus_phage	88.5	7.1e-20
SQG42497.1|542128_542770_-	phage protein	NA	J7KJ31	Streptococcus_phage	100.0	1.5e-116
SQG42499.1|542821_543010_+	putative cro protein	NA	A0A0B5A7F0	Streptococcus_phage	63.3	2.6e-13
SQG42502.1|543058_543820_+	phage antirepressor protein	NA	A0A0C5AEJ9	Bacteriophage	61.9	1.6e-85
SQG42504.1|543832_543964_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG42507.1|543960_544143_-	phage membrane protein	NA	NA	NA	NA	NA
SQG42509.1|544229_544367_+	phage protein	NA	NA	NA	NA	NA
SQG42511.1|544368_544554_+	phage protein	NA	Q938N3	Temperate_phage	83.6	2.0e-21
SQG42513.1|545036_545423_+	phage DNA replication protein	NA	Q938N2	Temperate_phage	51.9	8.1e-25
SQG42514.1|545403_545637_+	phage protein	NA	Q938N1	Temperate_phage	94.8	1.8e-35
SQG42516.1|545633_545774_+	phage protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
SQG42517.1|545782_545989_+	phage protein	NA	NA	NA	NA	NA
SQG42519.1|546044_546377_+	phage protein	NA	J7KGX3	Streptococcus_phage	78.7	2.2e-42
SQG42520.1|546376_547366_+	recombinase RecT	NA	A0A286QMX3	Streptococcus_phage	44.2	5.8e-59
SQG42522.1|547362_547563_+	phage protein	NA	NA	NA	NA	NA
SQG42523.1|547555_548353_+	phage protein	NA	J7KGZ1	Streptococcus_phage	83.8	6.6e-130
SQG42525.1|548529_548871_+	phage protein	NA	M1NS23	Streptococcus_phage	38.7	3.1e-12
SQG42526.1|548867_549380_+	phage protein	NA	Q708P9	Streptococcus_phage	73.2	8.4e-62
SQG42528.1|549366_549564_+	phage protein	NA	A3F626	Streptococcus_phage	86.5	9.9e-11
SQG42530.1|549557_549842_+	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	100.0	7.0e-50
SQG42532.1|549838_550108_+	phage protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
SQG42533.1|550117_550531_+	phage protein	NA	Q938M1	Temperate_phage	65.2	6.4e-36
SQG42535.1|550527_550812_+	phage protein	NA	A3F628	Streptococcus_phage	79.8	4.6e-33
SQG42537.1|550815_551298_+	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
SQG42539.1|551287_552052_+	Adenine-specific methyltransferase	NA	A0A1S5SE41	Streptococcus_phage	92.3	4.2e-134
SQG42540.1|552099_552825_+	phage protein	NA	Q938L9	Temperate_phage	44.8	3.1e-25
SQG42542.1|552821_552992_+	phage protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	100.0	2.9e-27
SQG42544.1|553267_553705_+	phage protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	97.9	6.7e-76
SQG42545.1|554287_555217_+	phage protein	NA	A0A126HAU2	Lactococcus_phage	71.8	4.9e-100
SQG42547.1|555343_555721_-	phage protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
SQG42549.1|555772_555958_-	phage protein	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
SQG42551.1|556056_556197_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG42552.1|556193_556532_+	Phage endonuclease	NA	J7KH36	Streptococcus_phage	90.7	3.0e-55
SQG42554.1|556702_557170_+|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
SQG42556.1|557172_557403_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG42557.1|557412_559161_+|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	96.2	0.0e+00
SQG42559.1|559157_559328_+	phage protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
SQG42561.1|559320_559545_+	phage protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
SQG42562.1|559578_560799_+|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.9	6.9e-187
SQG42563.1|560776_561442_+|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	78.1	3.5e-92
SQG42564.1|561466_562654_+|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	74.7	1.3e-158
SQG42565.1|562798_563101_+	phage protein	NA	J7KC36	Streptococcus_phage	88.8	1.3e-41
SQG42567.1|563097_563445_+	phage protein	NA	J7KJ42	Streptococcus_phage	88.2	2.9e-50
SQG42568.1|563441_563819_+	phage protein	NA	J7KDM3	Streptococcus_phage	72.8	1.8e-45
SQG42570.1|563815_564241_+	phage protein	NA	J7KBZ9	Streptococcus_phage	84.4	7.2e-67
SQG42572.1|564256_564865_+|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	71.9	6.7e-74
SQG42573.1|564917_565244_+	phage protein	NA	J7KK85	Streptococcus_phage	75.0	8.3e-39
SQG42575.1|565453_569377_+|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	48.5	1.9e-238
SQG42577.1|569376_570120_+	phage protein	NA	Q938K2	Temperate_phage	68.0	5.7e-75
SQG42578.1|570120_572127_+	Phage endopeptidase	NA	Q938K1	Temperate_phage	94.5	0.0e+00
SQG42580.1|572123_573134_+	phage hyaluronidase	NA	Q938K0	Temperate_phage	75.8	7.8e-136
SQG42582.1|573146_575033_+	gp58-like family protein	NA	Q938J9	Temperate_phage	84.7	6.9e-218
SQG42584.1|575044_575476_+	phage protein	NA	Q938J8	Temperate_phage	89.5	1.3e-63
SQG42586.1|575478_576096_+	phage protein	NA	Q938J7	Temperate_phage	89.3	5.0e-77
SQG42587.1|576105_576381_+|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQG42589.1|576377_576605_+	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	5.8e-31
SQG42590.1|576720_577926_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	83.3	1.6e-204
SQG42591.1|577993_578701_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
SQG42592.1|578811_579570_-	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQG42594.1|579881_581300_+	dipeptidase	NA	NA	NA	NA	NA
579907:579925	attR	CATGTACAACTATACTCGT	NA	NA	NA	NA
SQG42596.1|581451_582999_+	high-affinity zinc uptake system protein	NA	NA	NA	NA	NA
SQG42597.1|583149_583872_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQG42599.1|583891_585091_+	tagatose-6-phosphate aldose/ketose isomerase	NA	NA	NA	NA	NA
SQG42601.1|585187_585448_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQG42602.1|585562_586504_-	DHH family protein	NA	NA	NA	NA	NA
SQG42604.1|586897_587347_+	flavodoxin	NA	NA	NA	NA	NA
SQG42606.1|587522_587807_+	chorismate mutase	NA	NA	NA	NA	NA
SQG42608.1|587799_589062_+	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	50.5	3.2e-94
SQG42610.1|589176_589524_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQG42611.1|590518_590950_-|transposase	transposase	transposase	H7BW61	unidentified_phage	39.1	8.8e-12
SQG42614.1|590986_591361_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG42616.1|591533_592103_+	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA	NA
SQG42617.1|592103_594056_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	46.2	8.9e-144
SQG42619.1|594423_596148_+	septation ring formation regulator	NA	NA	NA	NA	NA
SQG42621.1|596279_596738_-	hypothetical cytosolic protein	NA	W6LLD2	Streptococcus_phage	39.1	2.3e-18
SQG42624.1|596964_598272_+	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
SQG42626.1|599039_599201_+|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
SQG42628.1|599422_600373_+	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQG42630.1|600369_601428_+|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
SQG42632.1|601447_602806_+|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
SQG42634.1|602780_603452_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
>prophage 5
LS483391	Streptococcus pyogenes strain NCTC8320 genome assembly, chromosome: 1	1863040	663699	717011	1863040	head,protease,tRNA,transposase	Streptococcus_phage(25.0%)	50	NA	NA
SQG42741.1|663699_665910_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.8	9.4e-267
SQG42742.1|666017_667181_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQG42744.1|667177_667864_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQG42746.1|667957_669124_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	5.8e-34
SQG42747.1|669184_669526_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
SQG42749.1|669746_671099_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.2	7.0e-31
SQG42751.1|671186_672455_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQG42753.1|672484_672925_-	membrane protein	NA	NA	NA	NA	NA
SQG42754.1|673159_674302_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	8.3e-25
SQG42755.1|674313_675528_+	thiamine biosynthesis protein thiI	NA	NA	NA	NA	NA
SQG42756.1|675565_676858_+	metallophosphatase	NA	A0A2H4JC87	uncultured_Caudovirales_phage	30.8	2.9e-34
SQG42758.1|676981_677959_+|transposase	transposase	transposase	H7BW61	unidentified_phage	34.6	4.6e-32
SQG42760.1|678157_678472_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
SQG42762.1|678483_678810_+	hypothetical ribosome-associated protein	NA	NA	NA	NA	NA
SQG42763.1|678837_679131_+	LSU ribosomal protein L27p	NA	NA	NA	NA	NA
SQG42765.1|679479_680394_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQG42767.1|680390_680849_+	signal peptidase II	NA	NA	NA	NA	NA
SQG42769.1|680838_681729_+	ribosomal large subunit pseudouridine synthase D	NA	A0A2H4UV25	Bodo_saltans_virus	25.3	1.6e-07
SQG42771.1|682124_682646_+	Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein pyrR	NA	NA	NA	NA	NA
SQG42773.1|682661_683921_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	36.2	3.5e-61
SQG42775.1|683981_684917_+	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	32.6	4.0e-25
SQG42777.1|684960_686043_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.9	4.7e-62
SQG42779.1|686288_689465_+	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA	NA
SQG42780.1|689639_690911_+	RND family efflux transporter MFP subunit	NA	NA	NA	NA	NA
SQG42782.1|690910_691621_+	bacitracin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.5	2.9e-36
SQG42784.1|691632_692853_+	permease family protein	NA	NA	NA	NA	NA
SQG42786.1|693106_694840_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
SQG42788.1|694966_695239_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
SQG42789.1|695248_695488_+	RNA binding protein	NA	NA	NA	NA	NA
SQG42791.1|696419_699446_+	LPXTG-motif cell wall anchor domain protein	NA	NA	NA	NA	NA
SQG42793.1|699465_699867_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
SQG42795.1|700046_700922_-	cation diffusion facilitator transporter family protein	NA	NA	NA	NA	NA
SQG42796.1|701057_701579_+	transcriptional regulator, TetR family	NA	NA	NA	NA	NA
SQG42798.1|701793_702312_+	16S rRNA-processing protein	NA	NA	NA	NA	NA
SQG42800.1|702301_703021_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQG42802.1|703032_704025_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
SQG42803.1|704202_705261_+	regulatory protein	NA	NA	NA	NA	NA
SQG42805.1|705273_706197_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQG42807.1|706497_707166_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.2	6.3e-17
SQG42810.1|707162_708074_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQG42812.1|708070_710017_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQG42814.1|710115_710709_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.5e-11
SQG42815.1|710859_711567_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	1.9e-11
SQG42817.1|711623_711842_-|transposase	degenerate transposase	transposase	A0A1B1P773	Bacillus_phage	55.9	2.7e-09
SQG42819.1|712523_712883_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQG42820.1|712879_713542_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQG42822.1|714045_714222_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQG42824.1|714449_714830_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG42826.1|714829_715678_+	degV family protein	NA	NA	NA	NA	NA
SQG42828.1|715802_717011_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	6.9e-38
>prophage 6
LS483391	Streptococcus pyogenes strain NCTC8320 genome assembly, chromosome: 1	1863040	1000740	1064748	1863040	tail,holin,terminase,transposase,portal,head,integrase	Streptococcus_phage(38.24%)	89	1007062:1007121	1053701:1053799
SQG43318.1|1000740_1003851_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.9	1.9e-119
SQG43320.1|1004035_1004407_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQG43321.1|1004406_1005105_+	ABC transporter family protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
SQG43322.1|1005114_1005900_+	ABC transporter permease protein	NA	NA	NA	NA	NA
SQG43323.1|1006026_1006641_-	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
1007062:1007121	attL	ACTCCCACCGGCTCCATCAATGCTTACCGTAAGTAATCATAACTTACTAAAACCTTGTTA	NA	NA	NA	NA
SQG43324.1|1007199_1007421_-	phage protein	NA	A3F673	Streptococcus_phage	84.7	1.1e-21
SQG43325.1|1007535_1008324_-	exotoxin M precursor	NA	Q938J1	Temperate_phage	41.4	5.3e-47
SQG43326.1|1008605_1009319_-	mitogen	NA	Q938J1	Temperate_phage	59.8	6.9e-78
SQG43327.1|1009622_1010489_-	phage protein	NA	Q938J2	Temperate_phage	98.6	2.2e-131
SQG43329.1|1010476_1011001_-	phage protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
SQG43331.1|1011140_1011785_-	bacterial SH3 domain protein	NA	Q938J4	Temperate_phage	78.6	3.6e-94
SQG43333.1|1011894_1012587_-	AP2 domain protein	NA	A0A2H4J2S8	uncultured_Caudovirales_phage	34.2	3.2e-32
SQG43335.1|1012819_1013377_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q938J4	Temperate_phage	88.1	2.8e-95
SQG43338.1|1013373_1013484_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	86.1	1.9e-08
SQG43340.1|1013492_1013720_-|holin	prophage LambdaSa03, holin	holin	A7J2B3	Streptococcus_phage	98.7	7.6e-31
SQG43342.1|1013716_1013992_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQG43344.1|1014007_1014619_-	phage protein	NA	Q938J7	Temperate_phage	90.1	4.4e-81
SQG43346.1|1014621_1014783_-	phage protein	NA	NA	NA	NA	NA
SQG43348.1|1014791_1015427_-	gp58-like family protein	NA	Q938J9	Temperate_phage	64.9	7.7e-73
SQG43349.1|1015463_1016696_-	phage protein	NA	Q938J9	Temperate_phage	86.1	6.7e-105
SQG43352.1|1016710_1017709_-	hyaluronidase	NA	Q938K0	Temperate_phage	63.3	6.8e-108
SQG43355.1|1017705_1019757_-	phage protein	NA	A3F656	Streptococcus_phage	84.6	0.0e+00
SQG43357.1|1019753_1020533_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.5	1.1e-65
SQG43359.1|1020564_1024200_-	tape measure domain protein	NA	U6E979	Streptococcus_phage	30.4	2.3e-04
SQG43361.1|1024214_1024544_-	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	40.6	2.0e-11
SQG43363.1|1024573_1024933_-	phage protein	NA	D7RWD6	Brochothrix_phage	44.6	3.3e-20
SQG43365.1|1024985_1025591_-|tail	phage major tail protein	tail	D7RWD5	Brochothrix_phage	52.2	4.4e-41
SQG43367.1|1025606_1025996_-	phage protein	NA	B5SP36	Lactococcus_phage	67.4	3.5e-44
SQG43370.1|1025992_1026358_-	phage protein	NA	A0A097BY98	Enterococcus_phage	45.5	2.2e-16
SQG43372.1|1026338_1026647_-	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
SQG43374.1|1026643_1026997_-	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	55.1	1.7e-24
SQG43376.1|1027010_1027253_-	phage protein	NA	NA	NA	NA	NA
SQG43377.1|1027262_1028342_-|head	phage head protein	head	A0A286QR01	Streptococcus_phage	57.3	1.9e-108
SQG43379.1|1028344_1028725_-	structural phage protein	NA	NA	NA	NA	NA
SQG43381.1|1028734_1029268_-	phage protein	NA	A0A141E0S7	Streptococcus_phage	83.9	1.4e-14
SQG43383.1|1029379_1030123_-	antirepressor	NA	M1PKL6	Streptococcus_phage	56.9	5.3e-73
SQG43385.1|1030124_1030373_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG43386.1|1030487_1030667_-	Uncharacterised protein	NA	M1NRK8	Streptococcus_phage	79.7	2.6e-18
SQG43388.1|1030762_1031032_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	84.1	2.3e-34
SQG43390.1|1031091_1031271_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG43392.1|1031261_1032887_-|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	U6E9F1	Streptococcus_phage	44.2	3.8e-47
SQG43394.1|1032867_1034370_-|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
SQG43395.1|1034381_1035671_-|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	74.5	1.4e-182
SQG43397.1|1035648_1036131_-|terminase	phage terminase small subunit	terminase	E0Y3R8	Staphylococcus_virus	40.3	1.5e-15
SQG43399.1|1036673_1037114_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	100.0	5.0e-79
SQG43400.1|1037138_1037567_-	phage protein	NA	A0A097PAV5	Streptococcus_pyogenes_phage	39.2	2.2e-10
SQG43402.1|1037569_1038202_-	phage protein	NA	L0P368	Streptococcus_phage	66.7	2.4e-82
SQG43404.1|1038203_1038470_-	phage protein	NA	A7J287	Streptococcus_phage	60.5	9.5e-17
SQG43405.1|1038466_1038637_-	phage protein	NA	Q938M0	Temperate_phage	93.5	9.4e-10
SQG43407.1|1038633_1039047_-	phage protein	NA	Q938M1	Temperate_phage	59.0	1.7e-33
SQG43409.1|1039030_1039318_-	phage protein	NA	J7KDH9	Streptococcus_phage	73.9	1.5e-31
SQG43411.1|1039317_1039563_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	97.5	2.5e-40
SQG43413.1|1039559_1039916_-	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	97.5	1.6e-59
SQG43414.1|1039899_1040250_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	89.4	2.6e-46
SQG43416.1|1040203_1041073_-	phage protein	NA	A0A1P8BME8	Lactococcus_phage	65.6	5.8e-103
SQG43418.1|1041341_1042895_-	bacteriophage resistance protein	NA	A0A1P8BM51	Lactococcus_phage	70.6	1.5e-210
SQG43419.1|1042912_1043395_-	phage protein	NA	A0A1P8BM40	Lactococcus_phage	70.1	2.2e-59
SQG43421.1|1043399_1044764_-	DEAD/DEAH box helicase	NA	A0A1P8BMH7	Lactococcus_phage	72.3	7.7e-195
SQG43423.1|1044838_1045522_-	phage protein	NA	J7KC09	Streptococcus_phage	98.6	3.6e-124
SQG43425.1|1045518_1045803_-	phage protein	NA	NA	NA	NA	NA
SQG43427.1|1045799_1045994_-	phage protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
SQG43429.1|1045993_1046323_-	phage protein	NA	A1EAC2	Streptococcus_phage	41.6	2.7e-13
SQG43431.1|1046306_1046420_-	Uncharacterised protein	NA	A0A097PAT6	Streptococcus_pyogenes_phage	72.2	1.7e-07
SQG43433.1|1046403_1046541_-	phage protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	100.0	3.4e-18
SQG43435.1|1046537_1046834_-	phage protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	98.0	3.1e-48
SQG43436.1|1046911_1047088_-	phage protein	NA	NA	NA	NA	NA
SQG43438.1|1047229_1047448_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG43440.1|1047623_1047833_+	phage protein	NA	NA	NA	NA	NA
SQG43442.1|1047791_1048037_-	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	93.8	4.6e-34
SQG43444.1|1048091_1048601_+	phage protein	NA	NA	NA	NA	NA
SQG43445.1|1048731_1048941_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG43448.1|1049050_1049251_-	helix-turn-helix family protein	NA	A0A141E205	Streptococcus_phage	59.6	2.7e-08
SQG43449.1|1049348_1050032_+	phage protein	NA	A0A1X9I5M7	Streptococcus_phage	59.4	1.2e-71
SQG43452.1|1049989_1050124_-	Uncharacterised protein	NA	X2KTZ3	Streptococcus_phage	79.5	3.4e-07
SQG43454.1|1050158_1050317_-	phage protein	NA	A0A097PAP2	Streptococcus_pyogenes_phage	94.2	1.5e-22
SQG43457.1|1050413_1050515_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG43459.1|1050673_1051498_+	phage transcriptional repressor	NA	A0A097PBE5	Streptococcus_pyogenes_phage	88.9	1.9e-124
SQG43461.1|1051510_1052320_+	phage protein	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
SQG43463.1|1052376_1052529_-	phage protein	NA	NA	NA	NA	NA
SQG43465.1|1052569_1053658_+|integrase	integrase	integrase	Q38159	Streptococcus_phage	99.4	4.2e-204
SQG43467.1|1054020_1054641_+	phage protein	NA	NA	NA	NA	NA
1053701:1053799	attR	ACTCCCACCGGCTCCATCAATGCTTACCGTAAGTAATCATAACTTACTAAAACCTTGTTACATCAAGGTTTTTTCTTTTTGTCTTGTTCATGAGTTACC	NA	NA	NA	NA
SQG43468.1|1054897_1057162_-	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
SQG43470.1|1057196_1058690_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
SQG43471.1|1058805_1059825_-	LacI family transcription regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
SQG43473.1|1060068_1061316_+	maltose/maltodextrin-binding protein	NA	NA	NA	NA	NA
SQG43475.1|1061589_1062951_+	maltose/maltodextrin ABC transport system permease	NA	NA	NA	NA	NA
SQG43477.1|1062950_1063787_+	maltose transport system permease	NA	NA	NA	NA	NA
SQG43479.1|1063967_1064219_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG43481.1|1064160_1064748_+|transposase	truncated transposase	transposase	Q9MBM9	Staphylococcus_prophage	39.1	1.3e-26
>prophage 7
LS483391	Streptococcus pyogenes strain NCTC8320 genome assembly, chromosome: 1	1863040	1130695	1210680	1863040	tail,protease,tRNA,terminase,holin,head,integrase	Streptococcus_phage(58.46%)	103	1172082:1172101	1208065:1208084
SQG43620.1|1130695_1131265_+|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	38.5	1.5e-27
SQG43622.1|1131304_1131520_+	Transposase	NA	U5P429	Shigella_phage	40.9	6.5e-08
SQG43624.1|1131616_1132312_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQG43626.1|1132330_1133092_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQG43628.1|1133088_1133310_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQG43630.1|1133344_1133479_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG43632.1|1133663_1136282_-|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	34.1	3.0e-62
SQG43633.1|1136668_1137724_-	foldase protein prsA 1	NA	NA	NA	NA	NA
SQG43635.1|1137786_1138458_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	2.4e-08
SQG43638.1|1138559_1139756_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQG43640.1|1140131_1141937_-	oligoendopeptidase F	NA	NA	NA	NA	NA
SQG43642.1|1141949_1142912_-	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQG43645.1|1143206_1143923_-	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQG43646.1|1144041_1144746_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQG43648.1|1144947_1145976_+|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQG43650.1|1146015_1147203_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG43652.1|1147316_1147907_-	S11 family peptidase	NA	NA	NA	NA	NA
SQG43654.1|1147903_1148152_-	lipoprotein	NA	NA	NA	NA	NA
SQG43656.1|1148207_1148354_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG43659.1|1148520_1149126_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.2	1.8e-58
SQG43661.1|1149222_1150263_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SQG43663.1|1150333_1152577_-	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.2	1.8e-55
SQG43666.1|1152557_1153220_-	comE operon 1 domain-containing protein	NA	NA	NA	NA	NA
SQG43667.1|1153418_1154159_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQG43669.1|1154198_1155053_+	methyltransferase	NA	NA	NA	NA	NA
SQG43672.1|1155042_1155321_+	GIY-YIG catalytic domain-containing protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	7.9e-06
SQG43675.1|1155344_1157345_-	Kup system potassium uptake protein	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	34.0	6.4e-65
SQG43677.1|1157471_1159091_-	DEAD-box ATP-dependent RNA helicase CshA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	1.9e-59
SQG43679.1|1159397_1160942_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.1	1.1e-35
SQG43681.1|1161189_1161885_-	integral membrane family protein	NA	NA	NA	NA	NA
SQG43683.1|1161964_1163356_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
SQG43685.1|1163554_1164601_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SQG43687.1|1164701_1165298_-	recombination protein	NA	NA	NA	NA	NA
SQG43689.1|1166086_1166356_-	formate transporter	NA	NA	NA	NA	NA
SQG43691.1|1166377_1166920_-	membrane protein	NA	NA	NA	NA	NA
SQG43693.1|1167080_1167602_-	3H domain-containing protein	NA	NA	NA	NA	NA
SQG43695.1|1167708_1168404_-	phosphoglyceromutase	NA	NA	NA	NA	NA
SQG43697.1|1168642_1169578_+	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	45.1	1.8e-65
SQG43700.1|1169877_1171740_-	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	34.0	2.4e-90
1172082:1172101	attL	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQG43702.1|1172270_1172453_-	paratox	NA	A3F673	Streptococcus_phage	76.7	1.4e-19
SQG43704.1|1172692_1173493_+	streptodornase	NA	NA	NA	NA	NA
SQG43706.1|1173761_1174196_+	phage membrane protein	NA	NA	NA	NA	NA
SQG43708.1|1174265_1175471_-	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	84.3	5.9e-207
SQG43710.1|1175467_1175578_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	94.4	3.0e-09
SQG43713.1|1175586_1175814_-	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQG43715.1|1175810_1176086_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQG43717.1|1176095_1176713_-	phage protein	NA	Q938J7	Temperate_phage	88.3	1.5e-76
SQG43719.1|1176715_1177147_-	phage protein	NA	Q938J8	Temperate_phage	97.2	1.1e-70
SQG43721.1|1177158_1178943_-	phage minor structural, region domain-containing protein	NA	Q938J9	Temperate_phage	47.3	2.4e-95
SQG43724.1|1178957_1179959_-	hyaluronidase	NA	Q938K0	Temperate_phage	71.6	2.3e-127
SQG43727.1|1179958_1181917_-	phage endopeptidase	NA	M1PKG3	Streptococcus_phage	48.5	9.0e-96
SQG43729.1|1181913_1182609_-	phage protein	NA	A0A1B1P761	Bacillus_phage	33.3	6.2e-07
SQG43732.1|1182605_1182950_-|tail	minor tail protein GP26	tail	M1NRG5	Streptococcus_phage	36.8	9.8e-06
SQG43735.1|1182970_1184122_-|tail	minor tail protein GP26	tail	A0A1P8BMM7	Lactococcus_phage	35.9	4.1e-40
SQG43737.1|1184102_1184414_-	phage protein	NA	M1NRZ6	Streptococcus_phage	74.7	9.4e-32
SQG43740.1|1184621_1185182_-	endonuclease	NA	A0A1B1IM39	Lactococcus_phage	84.4	1.0e-84
SQG43743.1|1185282_1185882_-	phage protein	NA	Q38126	Lactococcus_phage	64.3	3.6e-56
SQG43746.1|1185881_1186253_-	phage protein	NA	M1PL84	Streptococcus_phage	62.4	2.9e-35
SQG43749.1|1186267_1186531_-	phage protein	NA	A0A0B5A2F3	Streptococcus_phage	55.8	1.0e-18
SQG43751.1|1186541_1187135_-|tail	major tail protein	tail	M1PKG8	Streptococcus_phage	62.5	3.5e-59
SQG43754.1|1187146_1187482_-	phage protein	NA	A0A1P8BMR5	Lactococcus_phage	64.0	4.9e-34
SQG43756.1|1187482_1187719_-	phage protein	NA	A0A0B5A7G2	Streptococcus_phage	71.4	2.5e-21
SQG43759.1|1187711_1188050_-	phage protein	NA	M1PFF8	Streptococcus_phage	70.3	2.2e-42
SQG43761.1|1188009_1188432_-	phage Gp19/Gp15/Gp42 family protein	NA	A0A0B5A2F6	Streptococcus_phage	70.8	3.7e-47
SQG43763.1|1188441_1188642_-	phage protein	NA	NA	NA	NA	NA
SQG43766.1|1188641_1189553_-|head	phage, major head protein	head	M1PFL0	Streptococcus_phage	67.0	2.2e-113
SQG43768.1|1189577_1190039_-	phage protein	NA	M1Q1L0	Streptococcus_phage	53.2	4.5e-38
SQG43770.1|1190120_1191536_-|terminase	phage terminase	terminase	A0A0B5A091	Streptococcus_phage	73.8	9.4e-212
SQG43772.1|1191617_1191854_-	phage protein	NA	M1IRA5	Streptococcus_phage	80.3	1.2e-31
SQG43775.1|1191855_1192122_-	secreted phage protein	NA	Q938K9	Temperate_phage	95.5	6.4e-37
SQG43777.1|1192114_1192267_-	phage protein	NA	NA	NA	NA	NA
SQG43779.1|1192343_1192568_-	phage protein	NA	NA	NA	NA	NA
SQG43782.1|1192573_1194067_-	phage protein	NA	M1Q184	Streptococcus_phage	55.6	3.7e-89
SQG43788.1|1194059_1195328_-	structural phage protein	NA	A0A1X9I693	Streptococcus_phage	76.2	2.4e-190
SQG43790.1|1195324_1195681_-	phage protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
SQG43793.1|1196283_1196703_-	phage protein	NA	A0A1X9I5B5	Streptococcus_phage	79.1	1.9e-56
SQG43795.1|1196778_1197030_-	phage protein	NA	M1PF60	Streptococcus_phage	59.0	1.6e-18
SQG43798.1|1197026_1197182_-	phage protein	NA	NA	NA	NA	NA
SQG43800.1|1197178_1197496_-	phage protein	NA	A1EAD7	Streptococcus_phage	71.4	9.0e-30
SQG43803.1|1197531_1198044_-	lactococcus phage M3 family protein	NA	M1PFM2	Streptococcus_phage	85.9	1.7e-78
SQG43806.1|1198040_1198373_-	phage protein	NA	M1NS23	Streptococcus_phage	67.0	8.8e-36
SQG43808.1|1198383_1199730_-	PcfJ	NA	A8ATM0	Listeria_phage	49.4	1.0e-122
SQG43811.1|1199726_1200122_-	phage protein	NA	A8ATL9	Listeria_phage	52.3	1.4e-19
SQG43813.1|1200272_1200365_-	phage protein	NA	A0A1S5SCN4	Streptococcus_phage	70.0	3.7e-05
SQG43815.1|1200486_1201284_-	phage protein	NA	J7KGZ1	Streptococcus_phage	83.8	1.3e-130
SQG43817.1|1201276_1201477_-	phage protein	NA	NA	NA	NA	NA
SQG43819.1|1201473_1202400_-	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
SQG43821.1|1202559_1202733_-	phage protein	NA	J7KGX3	Streptococcus_phage	75.0	6.8e-16
SQG43824.1|1202788_1202995_-	phage protein	NA	NA	NA	NA	NA
SQG43826.1|1203003_1203144_-	phage protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
SQG43828.1|1203140_1203374_-	phage protein	NA	Q938N1	Temperate_phage	96.1	2.8e-36
SQG43831.1|1203354_1203741_-	phage DNA replication protein	NA	Q938N2	Temperate_phage	51.9	8.1e-25
SQG43833.1|1204244_1204430_-	phage protein	NA	Q938N3	Temperate_phage	83.6	1.3e-20
SQG43836.1|1204431_1204743_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	77.7	5.3e-43
SQG43838.1|1204840_1204972_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG43840.1|1205012_1205225_-	helix-turn-helix family protein	NA	A0A1X9I583	Streptococcus_phage	56.7	1.1e-10
SQG43842.1|1205426_1206182_+	Cro/CI family transcriptional regulator	NA	A0A1S5S8S8	Streptococcus_phage	60.8	2.8e-77
SQG43845.1|1206193_1206712_+	HIRAN domain protein	NA	E8ZDN5	Streptococcus_phage	45.9	9.2e-32
SQG43847.1|1206835_1207978_+|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
SQG43849.1|1208066_1208342_-	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
1208065:1208084	attR	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQG43852.1|1208440_1209028_-	membrane protein	NA	NA	NA	NA	NA
SQG43855.1|1209005_1209866_-	GDSL family lipase	NA	NA	NA	NA	NA
SQG43857.1|1209840_1210680_-	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
>prophage 8
LS483391	Streptococcus pyogenes strain NCTC8320 genome assembly, chromosome: 1	1863040	1409984	1459928	1863040	tail,capsid,tRNA,terminase,head,integrase	Temperate_phage(56.67%)	73	1448628:1448643	1468245:1468260
SQG44285.1|1409984_1410620_-|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQG44287.1|1410619_1411411_-	phosphotransferase	NA	NA	NA	NA	NA
SQG44288.1|1411474_1412509_-	bacterial ABC transporter EcsB family protein	NA	NA	NA	NA	NA
SQG44290.1|1412511_1413237_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.0	3.9e-20
SQG44292.1|1413308_1413728_+	protein hit	NA	NA	NA	NA	NA
SQG44294.1|1413724_1414081_+	chemotaxis protein	NA	NA	NA	NA	NA
SQG44295.1|1414191_1415475_-	biofilm regulatory protein A	NA	NA	NA	NA	NA
SQG44297.1|1415483_1416008_-	acetyltransferase family protein	NA	NA	NA	NA	NA
SQG44299.1|1415982_1416444_-	P-loop hydrolase	NA	NA	NA	NA	NA
SQG44301.1|1416597_1418058_-	permease family protein	NA	A0A0R6PHV4	Moraxella_phage	29.3	1.9e-37
SQG44303.1|1418397_1418580_-	phage protein	NA	A3F673	Streptococcus_phage	81.7	1.7e-20
SQG44304.1|1418819_1419818_+	Sda	NA	A7J2B8	Streptococcus_phage	53.9	5.3e-84
SQG44306.1|1419958_1420552_-	phage protein	NA	A0A0A8WFI2	Clostridium_phage	38.2	2.4e-23
SQG44308.1|1420551_1420716_-	phage protein	NA	NA	NA	NA	NA
SQG44309.1|1420864_1422070_-	N-acetylmuramoyl-L-alanine amidase	NA	A7J2B5	Streptococcus_phage	83.5	1.2e-204
SQG44311.1|1422057_1422180_-	phage membrane protein	NA	NA	NA	NA	NA
SQG44313.1|1422182_1422377_-	phage protein	NA	Q938J5	Temperate_phage	85.9	1.4e-20
SQG44315.1|1422373_1422673_-	phage protein	NA	Q938J6	Temperate_phage	93.8	1.9e-42
SQG44317.1|1422683_1423301_-	phage protein	NA	Q938J7	Temperate_phage	88.3	4.5e-78
SQG44319.1|1423303_1423732_-	phage protein	NA	Q938J8	Temperate_phage	78.6	1.9e-54
SQG44321.1|1423743_1425759_-	Phage infection protein	NA	Q938J9	Temperate_phage	73.2	2.4e-176
SQG44323.1|1425773_1426883_-	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	65.6	3.3e-111
SQG44325.1|1426882_1428892_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	93.8	0.0e+00
SQG44327.1|1428869_1429028_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	94.1	1.1e-20
SQG44329.1|1429024_1429741_-	phage protein	NA	Q938K2	Temperate_phage	99.2	5.5e-136
SQG44331.1|1429737_1432998_-	phage protein	NA	Q938K3	Temperate_phage	99.3	0.0e+00
SQG44332.1|1432987_1433569_-	bacteriophage Gp15 family protein	NA	Q938K4	Temperate_phage	92.2	2.9e-98
SQG44334.1|1433572_1434007_-	phage protein	NA	Q938K5	Temperate_phage	97.2	1.8e-68
SQG44337.1|1434050_1434512_-|tail	tail shaft protein	tail	Q938K6	Temperate_phage	78.8	1.9e-60
SQG44338.1|1434511_1434910_-|capsid	minor capsid protein	capsid	Q79S87	Temperate_phage	99.2	1.3e-70
SQG44340.1|1434906_1435263_-	phage protein	NA	Q79S88	Temperate_phage	100.0	4.5e-62
SQG44342.1|1435262_1435622_-|capsid	minor capsid protein - phage associated	capsid	Q79S86	Temperate_phage	100.0	1.0e-58
SQG44344.1|1435584_1436001_-	phage protein	NA	Q938K7	Temperate_phage	99.1	4.3e-56
SQG44347.1|1436054_1436873_-|head	putative major head protein	head	Q79S85	Temperate_phage	100.0	4.0e-146
SQG44348.1|1436876_1437485_-	phage protein	NA	Q938K8	Temperate_phage	95.0	4.0e-95
SQG44350.1|1437616_1437883_-	secreted phage protein	NA	Q938K9	Temperate_phage	95.5	8.3e-37
SQG44352.1|1437969_1438197_-	phage protein	NA	NA	NA	NA	NA
SQG44354.1|1438196_1439690_-|capsid	phage minor capsid 2 family protein	capsid	Q938L1	Temperate_phage	80.6	1.1e-213
SQG44356.1|1439694_1441197_-|capsid	Minor capsid protein	capsid	Q938L2	Temperate_phage	96.8	1.4e-274
SQG44358.1|1441210_1442422_-|terminase	phage terminase	terminase	Q938L3	Temperate_phage	97.9	5.0e-222
SQG44360.1|1442504_1442978_-	phage protein	NA	Q938L4	Temperate_phage	98.1	2.8e-75
SQG44362.1|1443028_1443406_-	phage transcriptional regulator	NA	Q938L5	Temperate_phage	100.0	1.7e-67
SQG44364.1|1443858_1444536_-	hypothetical amino acid ABC transporter ATP-binding protein	NA	Q938L6	Temperate_phage	99.6	4.3e-130
SQG44367.1|1444514_1445033_-	Chromosome partitioning protein parB	NA	Q938L7	Temperate_phage	97.1	1.3e-86
SQG44369.1|1445496_1445937_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	98.6	4.2e-78
SQG44371.1|1446210_1446477_-	phage protein	NA	NA	NA	NA	NA
SQG44372.1|1446473_1446845_-	phage protein	NA	Q938L9	Temperate_phage	48.0	2.0e-20
SQG44375.1|1446965_1447598_-	phage protein	NA	L0P368	Streptococcus_phage	68.6	2.3e-85
SQG44377.1|1447599_1447884_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	87.2	8.9e-37
SQG44379.1|1447894_1448065_-	phage protein	NA	Q938M0	Temperate_phage	100.0	8.5e-11
SQG44381.1|1448061_1448466_-	phage protein	NA	Q938M1	Temperate_phage	93.3	9.9e-66
SQG44383.1|1448462_1448747_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	97.9	2.7e-49
1448628:1448643	attL	ATCGATTGCTTCCATG	NA	NA	NA	NA
SQG44386.1|1448740_1448992_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	92.8	3.4e-40
SQG44388.1|1448988_1449345_-	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	100.0	5.0e-61
SQG44390.1|1449341_1449782_-	phage protein	NA	A0A097PAS0	Streptococcus_pyogenes_phage	98.6	1.6e-80
SQG44393.1|1449990_1450410_-	single-stranded DNA-binding protein ssb	NA	Q938M7	Temperate_phage	99.3	2.1e-71
SQG44395.1|1450402_1451077_-	Single-stranded DNA-binding protein	NA	Q938M8	Temperate_phage	99.6	9.6e-106
SQG44397.1|1451077_1451560_-	phage protein	NA	Q938M9	Temperate_phage	100.0	8.2e-51
SQG44399.1|1451581_1451836_-	phage protein	NA	Q938N0	Temperate_phage	98.8	3.7e-42
SQG44402.1|1451816_1452173_-	phage protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	98.3	2.0e-49
SQG44404.1|1452183_1452321_-	phage protein	NA	J7KBQ4	Streptococcus_phage	78.4	2.7e-07
SQG44405.1|1452320_1453163_-	phage DNA replication protein	NA	A0A1S5S7L9	Streptococcus_phage	40.7	1.3e-48
SQG44407.1|1453172_1454111_-	DNA replication protein dnaD	NA	J7KBV5	Streptococcus_phage	84.9	1.4e-115
SQG44410.1|1454124_1454439_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	94.2	5.9e-50
SQG44412.1|1454454_1454589_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	97.7	3.3e-18
SQG44414.1|1454619_1454871_-	phage protein	NA	A0A1P8VVV6	Streptococcus_phage	96.4	4.4e-40
SQG44415.1|1454970_1455183_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG44418.1|1455280_1456000_-	phage antirepressor family protein	NA	A0A141E1D3	Streptococcus_phage	69.2	2.8e-87
SQG44420.1|1456027_1456240_-	phage family protein	NA	J7KBP9	Streptococcus_phage	95.7	9.2e-31
SQG44421.1|1456436_1456778_+	phage repressor protein	NA	J7KJZ4	Streptococcus_phage	85.8	1.2e-48
SQG44423.1|1456761_1457148_+	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	77.6	8.3e-54
SQG44425.1|1457162_1458584_+	phage membrane protein	NA	M1PLF9	Streptococcus_phage	74.5	7.4e-140
SQG44427.1|1458761_1459928_+|integrase	phage integrase	integrase	C5J953	Streptococcus_phage	42.4	2.4e-80
1468245:1468260	attR	ATCGATTGCTTCCATG	NA	NA	NA	NA
