The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	4185	53357	2039982	tRNA,transposase,bacteriocin	Streptococcus_phage(22.22%)	44	NA	NA
SQG33296.1|4185_4755_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
SQG33297.1|4755_8265_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
SQG33298.1|8322_8589_+	S4 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
SQG33299.1|8581_8950_+	cell division protein	NA	NA	NA	NA	NA
SQG33300.1|8954_9077_+	putative extracellular protein	NA	NA	NA	NA	NA
SQG33301.1|9069_10338_+	beta-lactamase	NA	NA	NA	NA	NA
SQG33302.1|10334_11612_+	MesJ/Ycf62 family protein	NA	A7K9Y8	Acanthocystis_turfacea_chlorella_virus	24.6	3.9e-07
SQG33303.1|11615_12158_+	hypoxanthine guanine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.9	4.7e-10
SQG33304.1|12173_14132_+	cell-division protein	NA	H8ZJI5	Ostreococcus_tauri_virus	45.8	3.2e-109
SQG33305.1|14253_14733_+	competence-specific global transcription modulator	NA	NA	NA	NA	NA
SQG33306.1|20224_20554_+|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
SQG33307.1|20732_21071_+|transposase	IS630-Spn1, transposase Orf2	transposase	NA	NA	NA	NA
SQG33308.1|21644_21851_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	83.8	8.1e-24
SQG33309.1|22167_22404_+	recombination regulator RecX	NA	NA	NA	NA	NA
SQG33310.1|22592_23921_+	adenylosuccinate synthetase	NA	L7Y4J5	Megavirus	37.1	3.6e-72
SQG33311.1|24121_24589_+	cytidine/deoxycytidylate deaminase	NA	NA	NA	NA	NA
SQG33312.1|24775_25219_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q2WG49	Clostridium_botulinum_D_phage	47.3	2.1e-29
SQG33313.1|25178_25736_+	phosphoglycerate mutase family protein	NA	NA	NA	NA	NA
SQG33314.1|25848_27111_+	DNA repair protein	NA	NA	NA	NA	NA
SQG33315.1|27183_27681_+	carbonic anhydrase	NA	NA	NA	NA	NA
SQG33316.1|27705_28365_+	repair protein	NA	NA	NA	NA	NA
SQG33317.1|28633_29602_+	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	34.7	4.0e-44
SQG33318.1|29623_30016_-|transposase	transposase-like protein	transposase	A0A1S5SBP9	Streptococcus_phage	88.2	7.9e-44
SQG33319.1|30142_30376_-	adenylosuccinate lyase	NA	NA	NA	NA	NA
SQG33320.1|30699_31053_-|transposase	nuclease family transposase	transposase	NA	NA	NA	NA
SQG33321.1|31269_33939_+	DNA polymerase I - 3'-5' exonuclease and polymerase domains	NA	A0A218MKQ4	uncultured_virus	30.1	1.3e-57
SQG33322.1|34023_34461_+	CoA-binding protein	NA	NA	NA	NA	NA
SQG33323.1|34651_35662_-	membrane protein	NA	NA	NA	NA	NA
SQG33324.1|35810_36980_+	aspartate aminotransferase	NA	NA	NA	NA	NA
SQG33325.1|36976_37747_+	DNA repair protein RecO	NA	NA	NA	NA	NA
SQG33326.1|37743_38736_+	fatty acid/phospholipid synthesis protein	NA	NA	NA	NA	NA
SQG33327.1|38741_38975_+	acyl carrier protein	NA	A0A2I7RIC8	Vibrio_phage	40.6	3.3e-05
SQG33328.1|39017_39311_+|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
SQG33329.1|39513_39744_+|bacteriocin	bacteriocin BlpO	bacteriocin	NA	NA	NA	NA
SQG33330.1|39746_39872_+|bacteriocin	bacteriocin BlpO	bacteriocin	NA	NA	NA	NA
SQG33331.1|40223_40985_-|transposase	IS1167, transposase	transposase	A0A1S5SBP9	Streptococcus_phage	93.3	2.2e-130
SQG33332.1|40981_41500_-|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.1	3.5e-79
SQG33333.1|41901_44055_+	competence factor transporting ATP-binding protein/permease ComA	NA	W8CYL7	Bacillus_phage	28.0	1.0e-44
SQG33334.1|44067_45417_+	competence factor transport protein ComB	NA	NA	NA	NA	NA
SQG33335.1|45586_46294_+	phosphoribosylaminoimidazole-succinocarboxamide synthetase	NA	A0A1D8KNF0	Synechococcus_phage	38.8	6.7e-41
SQG33336.1|46495_50221_+	phosphoribosylformylglycinamidine synthase II (FGAM synthetase)	NA	A6N228	Microbacterium_phage	25.8	2.1e-37
SQG33337.1|50313_51756_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.4	2.6e-55
SQG33338.1|51792_52815_+	phosphoribosylaminoimidazole synthetase	NA	A0A1D7SE90	Cyanophage	43.9	1.6e-64
SQG33339.1|52811_53357_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
>prophage 2
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	106609	142257	2039982	tRNA,bacteriocin,transposase	Streptococcus_phage(60.0%)	37	NA	NA
SQG33387.1|106609_106858_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQG33388.1|106912_109021_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQG33389.1|109017_109659_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
SQG33390.1|109864_110671_+	amino acid ABC transporter periplasmic amino acid-binding protein	NA	NA	NA	NA	NA
SQG33391.1|110687_111884_+	argininosuccinate synthase	NA	NA	NA	NA	NA
SQG33392.1|111912_113304_+	argininosuccinate lyase	NA	NA	NA	NA	NA
SQG33393.1|113592_114456_-	helix-turn-helix domain protein	NA	NA	NA	NA	NA
SQG33394.1|114921_115143_+	transporter, truncation	NA	NA	NA	NA	NA
SQG33395.1|115206_117141_+	Bacteriocin ABC transoporter	NA	W8CYL7	Bacillus_phage	25.7	2.6e-39
SQG33396.1|117133_117601_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG33397.1|117597_118950_+	Secreted protein	NA	NA	NA	NA	NA
SQG33398.1|119095_119476_+	Membrane protein	NA	NA	NA	NA	NA
SQG33399.1|120723_120888_+	Membrane protein	NA	NA	NA	NA	NA
SQG33400.1|121055_121427_+	Membrane protein	NA	NA	NA	NA	NA
SQG33401.1|122020_122146_+	Membrane protein	NA	NA	NA	NA	NA
SQG33402.1|122451_123510_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG33403.1|123823_124801_+	Leader peptidase	NA	NA	NA	NA	NA
SQG33404.1|125177_125552_+	Membrane protein	NA	NA	NA	NA	NA
SQG33405.1|125759_126662_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG33406.1|126717_127071_+	Membrane protein	NA	NA	NA	NA	NA
SQG33407.1|127067_127796_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG33408.1|128274_128472_+|bacteriocin	putative bacteriocin	bacteriocin	NA	NA	NA	NA
SQG33409.1|129154_129433_+	membrane associated protein	NA	M1Q0Z8	Streptococcus_phage	50.5	2.5e-20
SQG33410.1|129723_131583_+	pneumococcal surface protein PspA	NA	NA	NA	NA	NA
SQG33411.1|131983_133105_+|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
SQG33412.1|133245_133701_+	mutT/nudix family protein	NA	NA	NA	NA	NA
SQG33413.1|133710_135624_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein GidA	tRNA	NA	NA	NA	NA
SQG33414.1|136003_137683_-	metallo-beta-lactamase superfamily protein 1	NA	NA	NA	NA	NA
SQG33415.1|137684_137918_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG33416.1|138197_138305_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG33417.1|138735_138888_-|bacteriocin	bacteriocin-type signal sequence domain-containing protein	bacteriocin	NA	NA	NA	NA
SQG33418.1|138889_139075_-	excreted peptide	NA	NA	NA	NA	NA
SQG33419.1|139252_139936_+	molecular chaperone	NA	NA	NA	NA	NA
SQG33420.1|139932_140370_+	acetyltransferase	NA	NA	NA	NA	NA
SQG33421.1|140359_141370_+	O-sialoglycoprotein endopeptidase	NA	NA	NA	NA	NA
SQG33422.1|141409_141796_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	72.4	1.4e-45
SQG33423.1|141786_142257_-|transposase	transposase-like protein, IS1167	transposase	A0A1S5SBP9	Streptococcus_phage	73.3	3.6e-43
>prophage 3
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	268557	374853	2039982	tRNA,protease,transposase,holin	Enterobacteria_phage(10.53%)	101	NA	NA
SQG33556.1|268557_269265_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
SQG33557.1|269389_270334_+	dihydropteroate synthase	NA	NA	NA	NA	NA
SQG33558.1|270335_271658_+	dihydrofolate synthetase	NA	NA	NA	NA	NA
SQG33559.1|271638_272193_+	GTP cyclohydrolase	NA	E7DN69	Pneumococcus_phage	44.9	7.5e-40
SQG33560.1|272235_273048_+	bifunctional folate synthesis protein	NA	NA	NA	NA	NA
SQG33561.1|273092_273410_-	Staphylococcal protein of uncharacterised function (DUF960)	NA	NA	NA	NA	NA
SQG33562.1|273766_274213_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
SQG33563.1|274232_274625_+	SSU ribosomal protein S9p (S16e)	NA	NA	NA	NA	NA
SQG33564.1|275338_275677_+	antibiotic biosynthesis monooxygenase subfamily protein	NA	NA	NA	NA	NA
SQG33565.1|275866_277303_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.5	2.0e-28
SQG33566.1|277354_277594_+	glutathione synthetase	NA	NA	NA	NA	NA
SQG33567.1|277723_278038_+	PTS system cellobiose transporter subunit IIB	NA	NA	NA	NA	NA
SQG33568.1|278161_280135_+	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
SQG33569.1|280144_280459_+	lichenan-specific phosphotransferase EIIA component	NA	NA	NA	NA	NA
SQG33570.1|280477_280984_+	PTS transporter	NA	NA	NA	NA	NA
SQG33571.1|281063_282410_+	PTS system transporter subunit IIC	NA	NA	NA	NA	NA
SQG33572.1|282791_282968_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG33573.1|282967_283093_+	filamentation induced by cAMP protein fic	NA	NA	NA	NA	NA
SQG33574.1|283369_285583_+	glycosyl hydrolase, family 31	NA	NA	NA	NA	NA
SQG33575.1|285804_286281_-	gluthatione peroxidase	NA	NA	NA	NA	NA
SQG33576.1|286503_289707_+	hyaluronidase	NA	NA	NA	NA	NA
SQG33577.1|290260_290476_+|transposase	truncated IS200 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	38.2	3.2e-07
SQG33578.1|290850_291480_-	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
SQG33579.1|291489_292491_-	carbohydrate kinase, PfkB family	NA	NA	NA	NA	NA
SQG33580.1|292521_293163_-	galactose-6-phosphate isomerase subunit LacB	NA	NA	NA	NA	NA
SQG33581.1|293181_293997_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
SQG33582.1|294267_294702_+	PTS system sugar-specific transporter subunit EII	NA	NA	NA	NA	NA
SQG33583.1|294713_295904_+	glucuronyl hydrolase	NA	NA	NA	NA	NA
SQG33584.1|295914_296406_+	N-acetylgalactosamine-specific phosphotransferase EIIB	NA	NA	NA	NA	NA
SQG33585.1|296420_297200_+	PTS system, N-acetylgalactosamine-specific IIC component	NA	NA	NA	NA	NA
SQG33586.1|297186_298005_+	PTS system transporter subunit IID	NA	NA	NA	NA	NA
SQG33587.1|298004_298298_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
SQG33588.1|298319_300221_+	oligohyaluronate lyase	NA	NA	NA	NA	NA
SQG33589.1|300280_301282_+	sugar binding transcriptional regulator RegR	NA	NA	NA	NA	NA
SQG33590.1|301510_301717_-	membrane protein	NA	NA	NA	NA	NA
SQG33591.1|301727_301970_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG33592.1|301985_302180_-	transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	9.4e-06
SQG33593.1|302345_303296_+	S-adenosyl-methyltransferase mraW	NA	NA	NA	NA	NA
SQG33594.1|303307_303625_+	cell division protein FtsL	NA	NA	NA	NA	NA
SQG33595.1|303628_305881_+	penicillin-binding protein 2X	NA	NA	NA	NA	NA
SQG33596.1|305882_306863_+	UDP-phosphate-UDP-MurNAc-pentapeptide phospho-MurNAc-pentapeptide transferase	NA	NA	NA	NA	NA
SQG33597.1|307419_309525_+	Group II intron maturase	NA	H6X3M6	Enterobacteria_phage	37.7	3.4e-117
SQG33598.1|309820_310303_-	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
SQG33599.1|310397_311882_-|protease	ATP-dependent Zn protease	protease	NA	NA	NA	NA
SQG33600.1|312034_313642_+	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
SQG33601.1|313800_313974_+	lipoprotein, putative	NA	NA	NA	NA	NA
SQG33602.1|314482_314812_-|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
SQG33603.1|315062_316025_+	capsular polysaccharide biosynthesis protein Cps14A	NA	A0A1X9I5X1	Streptococcus_phage	55.8	5.5e-62
SQG33604.1|316170_316953_+	polysaccharide polymerase	NA	NA	NA	NA	NA
SQG33605.1|317082_318240_+	glycoside hydrolase family protein	NA	NA	NA	NA	NA
SQG33606.1|318236_319646_+	polysaccharide flippase transporter	NA	NA	NA	NA	NA
SQG33607.1|319681_320920_+	UDP-glucose 6-dehydrogenase	NA	M1I6D5	Acanthocystis_turfacea_Chlorella_virus	49.9	3.3e-104
SQG33608.1|320948_321554_+	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	62.6	1.7e-69
SQG33609.1|321631_322501_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	64.6	2.2e-102
SQG33610.1|322501_323095_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	33.1	3.9e-10
SQG33611.1|323107_324157_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.5	8.3e-72
SQG33612.1|324222_325074_+	dTDP-4-keto-L-rhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.4	1.5e-26
SQG33613.1|325272_325596_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG33614.1|325598_326048_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG33615.1|326118_326277_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG33616.1|326478_328461_+	oligopeptide ABC transporter oligopeptide-binding protein AliA	NA	NA	NA	NA	NA
SQG33617.1|328760_334064_+	endo-alpha-N-acetylgalactosaminidase	NA	NA	NA	NA	NA
SQG33618.1|334230_336390_-	penicillin-binding protein 1A	NA	NA	NA	NA	NA
SQG33619.1|336386_336983_-	recombination protein U	NA	A0A1L2JY30	Aeribacillus_phage	33.9	8.7e-18
SQG33620.1|337048_337576_+	UPF0398 protein SSU05	NA	NA	NA	NA	NA
SQG33621.1|337645_337975_+	cell division initiation protein	NA	NA	NA	NA	NA
SQG33622.1|338460_339618_+	N-6 adenine-specific DNA methylase	NA	NA	NA	NA	NA
SQG33623.1|339630_341025_+	Holliday junction-specific endonuclease	NA	NA	NA	NA	NA
SQG33624.1|341100_342525_+|holin	choline binding protein J	holin	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	1.6e-41
SQG33625.1|342536_343226_+|holin	choline binding protein J	holin	NA	NA	NA	NA
SQG33626.1|343323_344340_+|holin	choline binding protein C	holin	NA	NA	NA	NA
SQG33627.1|344461_345340_+	mevalonate kinase	NA	NA	NA	NA	NA
SQG33628.1|345321_346275_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQG33629.1|346261_347269_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQG33630.1|347252_348263_+	isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2	NA	NA	NA	NA	NA
SQG33631.1|348340_349039_+	transporter	NA	NA	NA	NA	NA
SQG33632.1|349035_350031_+	histidine kinase	NA	NA	NA	NA	NA
SQG33633.1|350044_350677_+	response regulator	NA	NA	NA	NA	NA
SQG33634.1|350677_350824_+	DNA alkylation repair enzyme, truncation	NA	NA	NA	NA	NA
SQG33635.1|351596_351791_+	V8-like Glu-specific endopeptidase	NA	NA	NA	NA	NA
SQG33636.1|351880_352489_+|holin	choline binding protein G	holin	NA	NA	NA	NA
SQG33637.1|352448_352742_+|holin	choline binding protein G	holin	NA	NA	NA	NA
SQG33638.1|352760_353645_+|holin	choline binding protein F	holin	NA	NA	NA	NA
SQG33639.1|353772_353958_-|transposase	IS3-Spn1 transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	50.0	2.7e-10
SQG33640.1|353905_354229_-|transposase	IS3-Spn1 transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	48.8	1.1e-14
SQG33641.1|354706_354976_-|transposase	transposase InsK for insertion sequence	transposase	NA	NA	NA	NA
SQG33642.1|355127_356897_+	PTS system mannitol-specific transporter subunit EIIBC	NA	NA	NA	NA	NA
SQG33643.1|356920_358876_+	putative transcriptional regulator MtlR	NA	NA	NA	NA	NA
SQG33644.1|358877_359315_+	mannitol-specific phosphotransferase EIIA	NA	NA	NA	NA	NA
SQG33645.1|359376_360513_+	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
SQG33646.1|361311_362595_+	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)	NA	NA	NA	NA	NA
SQG33647.1|362642_365009_-	recombinase D	NA	A0A0K2FLP8	Brevibacillus_phage	26.9	2.2e-56
SQG33648.1|365242_365857_-	signal peptidase I	NA	NA	NA	NA	NA
SQG33649.1|365868_366741_-	ribonuclease HIII	NA	NA	NA	NA	NA
SQG33650.1|366827_367130_+|tRNA	seryl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQG33651.1|367126_367675_+	CvpA family protein	NA	NA	NA	NA	NA
SQG33652.1|367778_370115_+	mismatch repair ATPase (MutS family)	NA	Q94M10	Lactobacillus_phage	50.0	1.8e-21
SQG33653.1|370456_371779_+	Na+/alanine symporter	NA	NA	NA	NA	NA
SQG33654.1|371996_372545_+	macrophage infectivity potentiator protein	NA	NA	NA	NA	NA
SQG33655.1|372654_373554_+	exfoliative toxin	NA	NA	NA	NA	NA
SQG33656.1|373578_374853_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.7	1.5e-91
>prophage 4
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	417614	479286	2039982	integrase,protease,transposase,bacteriocin	Bacillus_phage(20.0%)	58	442010:442026	473142:473158
SQG33701.1|417614_417785_-|transposase	ISSpo8 transposase	transposase	NA	NA	NA	NA
SQG33702.1|418436_419660_-	ROK family protein	NA	NA	NA	NA	NA
SQG33703.1|419827_421150_+	PTS system cellobiose-specific IIC component	NA	NA	NA	NA	NA
SQG33704.1|421151_423038_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG33705.1|423205_423550_+	lactose-specific phosphotransferase EIIA	NA	NA	NA	NA	NA
SQG33706.1|423559_424972_+	6-phospho-beta-galactosidase	NA	NA	NA	NA	NA
SQG33707.1|425040_426720_+	pts system lactose-specific transporter subunit EIIBC	NA	NA	NA	NA	NA
SQG33708.1|426847_428287_-	potassium uptake protein	NA	NA	NA	NA	NA
SQG33709.1|428290_429640_-	potassium uptake protein	NA	NA	NA	NA	NA
SQG33710.1|429828_430677_+	Molybdate/tungstate binding protein	NA	NA	NA	NA	NA
SQG33711.1|430691_431240_+	protein YdcD	NA	NA	NA	NA	NA
SQG33712.1|431246_431459_+	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
SQG33713.1|431560_433243_+	cobalt ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	2.0e-19
SQG33714.1|433227_434058_+	ABC transporter permease	NA	NA	NA	NA	NA
SQG33715.1|434250_434754_+	RNA methyltransferase	NA	NA	NA	NA	NA
SQG33716.1|435212_435776_+	riboflavin transporter	NA	NA	NA	NA	NA
SQG33717.1|435765_436416_+	phosphatase	NA	NA	NA	NA	NA
SQG33718.1|436443_436833_+	putative histone acetyltransferase	NA	NA	NA	NA	NA
SQG33719.1|436837_437287_+	sortase-like acyltransferase	NA	NA	NA	NA	NA
SQG33720.1|437414_438002_+	DNA-dependent RNA Polymerase, delta subunit (RNAP delta factor)	NA	NA	NA	NA	NA
SQG33721.1|438391_439999_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
SQG33722.1|440557_442189_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
442010:442026	attL	AGTCATCCCAATACCAA	NA	NA	NA	NA
SQG33723.1|442481_447461_+	endo-beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
SQG33724.1|447550_448747_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
SQG33725.1|448882_449410_+	signal peptide	NA	NA	NA	NA	NA
SQG33726.1|449486_449843_+	transcriptional repressor of the glutamine synthetase gene	NA	NA	NA	NA	NA
SQG33727.1|449879_451226_+	glutamate-ammonia ligase	NA	NA	NA	NA	NA
SQG33728.1|451405_451555_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG33729.1|452005_453286_+	type I restriction enzyme	NA	A0A1V0SLK8	Klosneuvirus	25.6	1.8e-12
SQG33730.1|453239_453779_-	type I restriction enzyme	NA	NA	NA	NA	NA
SQG33731.1|453849_454647_-|integrase	integrase/recombinase, phage integrase family	integrase	A0A0H4TI16	Erysipelothrix_phage	28.7	1.7e-21
SQG33732.1|454703_456272_-	type I site-specific deoxyribonuclease chain S	NA	NA	NA	NA	NA
SQG33733.1|456271_457735_-	type I restriction-modification system M protein	NA	NA	NA	NA	NA
SQG33734.1|457747_460081_-	type I restriction-modification system, R subunit	NA	Q5YA94	Bacillus_phage	27.6	5.8e-25
SQG33735.1|460453_460654_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG33736.1|460688_461198_+	Protein of uncharacterised function (DUF2812)	NA	NA	NA	NA	NA
SQG33737.1|461361_462396_+	heat-inducible transcription repressor	NA	NA	NA	NA	NA
SQG33738.1|462422_462947_+	heat shock protein GrpE	NA	NA	NA	NA	NA
SQG33739.1|463426_465250_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
SQG33740.1|465251_465608_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG33741.1|466009_467128_+	dnaJ protein, Heat-shock protein (activation of DnaK)	NA	E3T4P7	Cafeteria_roenbergensis_virus	30.2	1.6e-20
SQG33742.1|467462_467750_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG33743.1|467759_468170_-	protein hit	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
SQG33744.1|468237_468969_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	4.1e-25
SQG33745.1|468965_470015_+	ABC transporter permease	NA	NA	NA	NA	NA
SQG33746.1|470182_470512_-	BlpT protein, fusion	NA	NA	NA	NA	NA
SQG33747.1|470787_471126_+	regulatory protein, single domain response regulator	NA	NA	NA	NA	NA
SQG33748.1|471130_471868_+	response regulator	NA	NA	NA	NA	NA
SQG33749.1|471881_473222_+	histidine kinase	NA	NA	NA	NA	NA
473142:473158	attR	AGTCATCCCAATACCAA	NA	NA	NA	NA
SQG33750.1|473263_473419_-	double glycine cleavage site bacteriolysin superfamily	NA	NA	NA	NA	NA
SQG33751.1|473475_474483_-	BlpC ABC transporter	NA	NA	NA	NA	NA
SQG33752.1|474501_474837_-	BlpC ABC transporter	NA	NA	NA	NA	NA
SQG33753.1|474847_476473_-	competence factor transporting ATP-binding protein/permease ComA	NA	W8CYL7	Bacillus_phage	27.1	1.2e-40
SQG33754.1|476417_477005_-|protease,bacteriocin	bacteriocin transporter C39 protease domain BlpA2	protease,bacteriocin	NA	NA	NA	NA
SQG33755.1|477294_477528_+|bacteriocin	putative bacteriocin BlpI	bacteriocin	NA	NA	NA	NA
SQG33756.1|477559_478249_+|protease	metal-dependent CAAX amino terminal membrane protease	protease	NA	NA	NA	NA
SQG33757.1|478290_478524_+	immunity protein BlpZ	NA	NA	NA	NA	NA
SQG33758.1|478674_479286_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
>prophage 5
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	563786	613901	2039982	tRNA,transposase,holin,bacteriocin,protease	Staphylococcus_phage(28.57%)	39	NA	NA
SQG33844.1|563786_570221_+|protease	serine protease	protease	NA	NA	NA	NA
SQG33845.1|570844_571321_+	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
SQG33846.1|571358_571664_+	PTS system IIB component (galactitol/fructose specific)	NA	NA	NA	NA	NA
SQG33847.1|571711_573187_+	PTS system galactitol-specific family transporter subunit IIC	NA	NA	NA	NA	NA
SQG33848.1|573491_580178_+	beta-galactosidase	NA	NA	NA	NA	NA
SQG33849.1|580559_580871_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG33850.1|581034_581280_-|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	42.3	2.1e-10
SQG33851.1|581491_581851_-	integral membrane protein	NA	NA	NA	NA	NA
SQG33852.1|581942_582395_+	radical SAM family protein	NA	NA	NA	NA	NA
SQG33853.1|582452_582899_+	putative Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	49.6	4.2e-33
SQG33854.1|582882_583440_+	SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	40.9	2.4e-33
SQG33855.1|583432_583687_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG33856.1|583698_585753_+	Na+/H+ antiporter	NA	NA	NA	NA	NA
SQG33857.1|585931_586792_+	ribonuclease BN	NA	NA	NA	NA	NA
SQG33858.1|587002_587713_+	cytochrome c-type biogenesis protein	NA	NA	NA	NA	NA
SQG33859.1|587732_588299_+	thioredoxin	NA	NA	NA	NA	NA
SQG33860.1|588309_589422_+	peptide methionine sulfoxide reductase	NA	NA	NA	NA	NA
SQG33861.1|589689_590427_+	DNA-binding response regulator	NA	NA	NA	NA	NA
SQG33862.1|590423_592115_+	histidine kinase	NA	Q9EYF3	Enterobacteria_phage	32.7	9.4e-25
SQG33863.1|592230_592794_+	UPF0340 protein SSU05	NA	NA	NA	NA	NA
SQG33864.1|592815_598446_+|protease	zinc metalloprotease ZmpB	protease	NA	NA	NA	NA
SQG33865.1|598515_600237_+	chorismate binding enzyme para-aminobenzoate synthetase	NA	S4VT78	Pandoravirus	27.0	2.9e-29
SQG33866.1|600237_600345_+	putative alpha/beta superfamily hydrolase	NA	NA	NA	NA	NA
SQG33867.1|600394_601384_+|holin	choline binding protein	holin	NA	NA	NA	NA
SQG33868.1|601519_602479_+	glucokinase	NA	NA	NA	NA	NA
SQG33869.1|602575_603415_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	55.0	3.6e-86
SQG33870.1|603462_603633_-	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQG33871.1|603753_604638_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQG33872.1|604630_605869_+	GTP-binding protein HflX	NA	NA	NA	NA	NA
SQG33873.1|605861_606485_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
SQG33874.1|606499_607429_+	hydrolase	NA	NA	NA	NA	NA
SQG33875.1|607449_608205_+	dehydrogenase	NA	NA	NA	NA	NA
SQG33876.1|608258_609227_-	transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	28.9	1.5e-06
SQG33877.1|609230_609500_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG33878.1|609499_609880_+	rhodanese family protein	NA	NA	NA	NA	NA
SQG33879.1|610235_610961_-	ribosomal small subunit pseudouridine synthase A	NA	NA	NA	NA	NA
SQG33880.1|611122_612964_+	GTP-binding protein TypA	NA	NA	NA	NA	NA
SQG33881.1|612983_613238_+	membrane protein	NA	NA	NA	NA	NA
SQG33882.1|613553_613901_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 6
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	691803	806286	2039982	tRNA,protease,transposase	Streptococcus_phage(12.9%)	108	NA	NA
SQG33972.1|691803_692019_+|tRNA	seryl-tRNA synthetase family protein	tRNA	NA	NA	NA	NA
SQG33973.1|692222_692759_-	biotin synthase	NA	NA	NA	NA	NA
SQG33974.1|692955_694302_-	glutathione reductase	NA	NA	NA	NA	NA
SQG33975.1|694566_695766_+	membrane-fusion protein	NA	NA	NA	NA	NA
SQG33976.1|695749_696451_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.9	4.0e-38
SQG33977.1|696452_697712_+	ABC transporter permeae	NA	NA	NA	NA	NA
SQG33978.1|697835_699833_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SEZ7	Hokovirus	31.4	2.3e-83
SQG33979.1|700163_700484_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
SQG33980.1|700487_701363_+	membrane protein	NA	NA	NA	NA	NA
SQG33981.1|701377_702304_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
SQG33982.1|702403_702640_+|tRNA	methionine--tRNA ligase	tRNA	NA	NA	NA	NA
SQG33983.1|702632_703331_+	short chain dehydrogenase	NA	A0A0K0KVL6	Prochlorococcus_phage	29.2	1.4e-06
SQG33984.1|703341_703821_+	NTP pyrophosphohydrolase including oxidative damage repair enzymes	NA	NA	NA	NA	NA
SQG33985.1|703858_704557_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQG33986.1|704598_705468_+	PEP-utilizing enzyme family protein	NA	NA	NA	NA	NA
SQG33987.1|705442_705883_+	acetyltransferase	NA	NA	NA	NA	NA
SQG33988.1|706005_708552_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	27.2	1.3e-73
SQG33989.1|708660_709335_+	DNA-binding response regulator CiaR	NA	W8CYM9	Bacillus_phage	33.6	3.1e-27
SQG33990.1|709324_710659_+	histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	34.0	1.2e-06
SQG33991.1|710692_710980_-	membrane protein	NA	NA	NA	NA	NA
SQG33992.1|711119_712049_+	U32 family peptidase	NA	NA	NA	NA	NA
SQG33993.1|712248_714699_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	47.5	6.4e-200
SQG33994.1|714735_715959_+	RodA	NA	NA	NA	NA	NA
SQG33995.1|715969_716524_+	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	27.2	6.4e-07
SQG33996.1|716599_717172_+	phosphatase	NA	NA	NA	NA	NA
SQG33997.1|717186_719133_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	45.3	7.2e-146
SQG33998.1|719214_720942_+	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
SQG33999.1|721684_722089_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG34000.1|722120_722630_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQG34001.1|723263_723563_-	Domain of uncharacterised function (DUF1827)	NA	NA	NA	NA	NA
SQG34002.1|723727_724150_-	mutT/nudix family protein	NA	NA	NA	NA	NA
SQG34003.1|724260_724590_+|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
SQG34004.1|725314_727573_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	K4FB40	Cronobacter_phage	40.4	4.6e-128
SQG34005.1|727801_728032_-	Protein of uncharacterised function (DUF1797)	NA	NA	NA	NA	NA
SQG34006.1|728221_728905_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
SQG34007.1|728904_729639_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	3.0e-36
SQG34008.1|729792_730650_+	FolD bifunctional protein; includes: methylenetetrahydrofolate dehydrogenase, methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	41.5	6.8e-40
SQG34009.1|730791_731664_+	carbohydrate kinase	NA	NA	NA	NA	NA
SQG34010.1|731945_732629_+	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQG34011.1|732642_733854_+	phosphopentomutase	NA	NA	NA	NA	NA
SQG34012.1|733855_734266_+	phosphopentomutase	NA	NA	NA	NA	NA
SQG34013.1|734413_735223_+	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQG34014.1|735686_736430_+	topology modulation protein	NA	NA	NA	NA	NA
SQG34015.1|736475_736679_+	exported glycosyl hydrolase	NA	NA	NA	NA	NA
SQG34016.1|736703_737216_+	pneumolysin	NA	NA	NA	NA	NA
SQG34017.1|737873_738584_+	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQG34018.1|738606_739131_-	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	40.6	3.4e-26
SQG34019.1|739183_739420_-	putative 30S ribosomal protein S20	NA	NA	NA	NA	NA
SQG34020.1|739487_740408_-	pantothenate kinase	NA	NA	NA	NA	NA
SQG34021.1|740605_741046_+	membrane protein (pseudogene)	NA	NA	NA	NA	NA
SQG34022.1|741252_741843_+	16S RNA G1207 methylase RsmC	NA	NA	NA	NA	NA
SQG34023.1|741839_743117_+	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	51.3	4.1e-113
SQG34024.1|743134_743797_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
SQG34025.1|743783_744173_+	cytidine deaminase	NA	NA	NA	NA	NA
SQG34026.1|744262_745315_+	lipoprotein	NA	NA	NA	NA	NA
SQG34027.1|745458_746994_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.5	1.4e-19
SQG34028.1|746986_748045_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
SQG34029.1|748047_749004_+	ABC transporter, membrane-spanning permease	NA	NA	NA	NA	NA
SQG34030.1|749088_749301_+|transposase	transposase orfA, ISSmu1	transposase	NA	NA	NA	NA
SQG34031.1|749436_749604_+|transposase	IS3-Spn1 transposase	transposase	NA	NA	NA	NA
SQG34032.1|749603_749972_+|transposase	degenerate transposase (Orf2)	transposase	A0A1B1P773	Bacillus_phage	53.6	1.2e-12
SQG34033.1|749947_750436_+|transposase	IS3-Spn1 transposase, truncation	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	51.6	1.2e-38
SQG34034.1|750478_751120_-	putative glycerol-3-phosphate acyltransferase PlsY	NA	NA	NA	NA	NA
SQG34035.1|751255_753199_+	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.0	1.2e-124
SQG34036.1|753198_753306_+	N-6 DNA methylase	NA	NA	NA	NA	NA
SQG34037.1|753654_756090_+	topoisomerase IV subunit A, ParC	NA	G3M9Z5	Bacillus_virus	31.1	1.8e-93
SQG34038.1|756219_757242_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQG34039.1|757297_758002_+	extracellular oligopeptide-binding protein	NA	NA	NA	NA	NA
SQG34040.1|758066_758756_+	permease	NA	NA	NA	NA	NA
SQG34041.1|758752_759676_+	permease	NA	NA	NA	NA	NA
SQG34042.1|759690_760335_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQG34043.1|760502_760733_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQG34044.1|761105_762308_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQG34045.1|762566_762971_-|transposase	degenerate transposase (orf2)	transposase	A0A1S5SBP9	Streptococcus_phage	94.6	2.4e-64
SQG34046.1|762967_763255_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	70.6	3.3e-23
SQG34047.1|763251_763770_-|transposase	IS1167 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	97.5	3.9e-83
SQG34048.1|763963_764461_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQG34049.1|764460_766116_+	DNA polymerase III subunits gamma and tau	NA	A0A1U9WR94	Streptococcus_virus	42.2	1.0e-47
SQG34050.1|766143_766338_+	membrane protein	NA	NA	NA	NA	NA
SQG34051.1|766487_767258_+	FeS assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	28.5	2.5e-09
SQG34052.1|767285_768548_+	FeS assembly protein SufD	NA	NA	NA	NA	NA
SQG34053.1|768558_769785_+	class-V aminotransferase	NA	Q2XUY6	environmental_halophage	44.4	9.6e-104
SQG34054.1|769771_770212_+	nifU family protein	NA	A0A2P1CJL8	Mycobacterium_phage	38.2	4.8e-13
SQG34055.1|770265_771678_+	Iron-sulfur cluster assembly protein SufB	NA	NA	NA	NA	NA
SQG34056.1|771876_773118_-	D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 3	NA	B6DZZ7	Stx2-converting_phage	25.5	8.2e-18
SQG34057.1|773220_774330_+	putative permease	NA	NA	NA	NA	NA
SQG34058.1|775754_776495_+	transcriptional repressor of fructose operon	NA	NA	NA	NA	NA
SQG34059.1|776491_777403_+	fructose-1-phosphate kinase	NA	NA	NA	NA	NA
SQG34060.1|777399_779352_+	PTS system, fructose specific IIBC component	NA	NA	NA	NA	NA
SQG34061.1|779437_781741_+	DNA translocase, cell division protein	NA	S5VNE3	Mycobacterium_phage	49.9	1.0e-85
SQG34062.1|781785_782214_-	membrane protein	NA	NA	NA	NA	NA
SQG34063.1|782291_783494_+	class-V aminotransferase	NA	NA	NA	NA	NA
SQG34064.1|783502_784717_+	thiamine biosynthesis ATP pyrophosphatase	NA	NA	NA	NA	NA
SQG34065.1|784851_785676_+	Esterase	NA	NA	NA	NA	NA
SQG34066.1|785697_786033_+	esterase superfamily protein	NA	NA	NA	NA	NA
SQG34067.1|786029_786437_+	esterase	NA	NA	NA	NA	NA
SQG34068.1|786449_787616_+	carbamoylphosphate synthase large subunit	NA	NA	NA	NA	NA
SQG34069.1|788123_789617_+	type I restriction modification enzyme methylase subunit	NA	A0A2H4UVB0	Bodo_saltans_virus	31.8	3.0e-27
SQG34070.1|789629_790241_+	type I restriction-modification system subunit S	NA	NA	NA	NA	NA
SQG34071.1|790319_793670_+	type I restriction-modification system R subunit	NA	A0A2H4P9W3	Gordonia_phage	24.8	3.1e-11
SQG34072.1|793940_794141_+	chlorohydrolase	NA	NA	NA	NA	NA
SQG34073.1|794255_794726_-	arginine repressor	NA	NA	NA	NA	NA
SQG34074.1|794742_797016_-	x-prolyl-dipeptidyl aminopeptidase	NA	NA	NA	NA	NA
SQG34075.1|797361_800463_+	DNA-polymerase III alpha-chain	NA	A0A291AWR1	Streptomyces_phage	32.6	4.4e-113
SQG34076.1|800545_801553_+	6-phosphofructokinase	NA	NA	NA	NA	NA
SQG34077.1|801611_803117_+	pyruvate kinase	NA	NA	NA	NA	NA
SQG34078.1|804923_805796_+	lipoprotein, putative	NA	NA	NA	NA	NA
SQG34079.1|806097_806286_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
>prophage 7
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	818449	864823	2039982	tRNA,protease,transposase,holin	Streptococcus_phage(50.0%)	49	NA	NA
SQG34095.1|818449_819325_-|transposase	IS1239 transposase	transposase	H7BWC8	unidentified_phage	31.6	6.8e-27
SQG34096.1|820031_821507_+	ornithine decarboxylase family protein	NA	NA	NA	NA	NA
SQG34097.1|821660_822188_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQG34098.1|822443_823304_+	spermidine synthase	NA	NA	NA	NA	NA
SQG34099.1|823300_824560_+	dehydrogenase family protein, saccharopine dehydrogenase	NA	NA	NA	NA	NA
SQG34100.1|824559_825687_+	LysA-like decarboxylase, diaminopimelate decarboxylase putative	NA	NA	NA	NA	NA
SQG34101.1|825683_826769_+	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	47.2	7.7e-89
SQG34102.1|826778_827654_+	carbon-nitrogen hydrolase family protein	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	49.7	4.2e-77
SQG34103.1|827834_828644_-	Cof family protein	NA	NA	NA	NA	NA
SQG34104.1|828915_829137_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34105.1|829190_829862_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
SQG34106.1|830103_831012_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
SQG34107.1|831008_831470_+	lipoprotein signal peptidase, signal peptidase type II	NA	NA	NA	NA	NA
SQG34108.1|831459_832347_+	23S rluA family pseudouridine synthase	NA	NA	NA	NA	NA
SQG34109.1|832349_834233_+|holin	choline binding protein E CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	22.1	4.0e-08
SQG34110.1|834333_835443_+	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.9e-114
SQG34111.1|835452_836715_+	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	64.5	2.5e-139
SQG34112.1|836718_837516_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.6	2.7e-59
SQG34113.1|837631_838270_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	68.1	1.3e-75
SQG34114.1|838266_839157_+	DNA polymerase III, delta' subunit	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
SQG34115.1|839196_839514_+	DNA replication intiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
SQG34116.1|839516_840386_+	tetrapyrrole methylase	NA	M1PLC5	Streptococcus_phage	76.1	2.7e-116
SQG34117.1|840612_841131_+	DUF1706 domain-containing protein	NA	NA	NA	NA	NA
SQG34118.1|841239_841887_+	phage protein	NA	A0A2P0VK56	Streptococcus_phage	33.7	7.0e-13
SQG34119.1|841875_842265_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG34120.1|842290_842680_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
SQG34121.1|843173_844508_+|tRNA	tRNA (uracil-5-)-methyltransferase Gid	tRNA	NA	NA	NA	NA
SQG34122.1|844591_845329_+	uridylate kinase	NA	NA	NA	NA	NA
SQG34123.1|845337_845895_+	ribosome-recycling factor	NA	NA	NA	NA	NA
SQG34124.1|845954_846809_+	s1 RNA binding domain protein	NA	NA	NA	NA	NA
SQG34125.1|846817_847033_+	serine-type D-Ala-D-Ala carboxypeptidase	NA	NA	NA	NA	NA
SQG34126.1|847118_848087_+	PhoH family protein	NA	W8D063	Erwinia_phage	47.9	5.9e-48
SQG34127.1|848279_848780_+	acetyltransferase	NA	NA	NA	NA	NA
SQG34128.1|848782_849010_+	TfoX N- domain family protein	NA	NA	NA	NA	NA
SQG34129.1|849409_849685_-	alanine dehydrogenase	NA	NA	NA	NA	NA
SQG34130.1|850095_850521_-	alanine dehydrogenase	NA	NA	NA	NA	NA
SQG34131.1|850697_851267_+	acetyltransferase	NA	NA	NA	NA	NA
SQG34132.1|851334_851985_+	competence protein	NA	NA	NA	NA	NA
SQG34133.1|851968_854209_+	competence protein CelB	NA	M1PSD2	Streptococcus_phage	51.6	2.8e-45
SQG34134.1|854607_855084_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	1.2e-09
SQG34135.1|855198_856380_+	ABC-type transport system involved in multi-copper enzyme maturation, permease component	NA	NA	NA	NA	NA
SQG34136.1|857249_857450_+	LSU ribosomal protein L35p	NA	NA	NA	NA	NA
SQG34137.1|857501_857861_+	LSU ribosomal protein L20p	NA	NA	NA	NA	NA
SQG34138.1|857918_858299_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
SQG34139.1|858548_859349_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
SQG34140.1|859359_860298_+	dihydroorotate dehydrogenase 1B	NA	NA	NA	NA	NA
SQG34141.1|860396_862505_+	putative endo-beta-N-acetylglucosaminidase	NA	A0A143FPM9	Bacillus_phage	42.6	9.0e-25
SQG34142.1|862565_864221_-	fibronectin/fibrinogen binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	36.5	4.7e-05
SQG34143.1|864325_864823_+|protease	putative metalloprotease	protease	NA	NA	NA	NA
>prophage 8
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	950329	992587	2039982	tRNA,transposase	Streptococcus_phage(36.36%)	43	NA	NA
SQG34232.1|950329_951553_+|tRNA	histidyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQG34233.1|951557_952493_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34234.1|952507_953707_+	nikkomycin biosynthesis protein, carboxylase	NA	NA	NA	NA	NA
SQG34235.1|953725_954370_+	hexapeptide repeat-containing transferase	NA	NA	NA	NA	NA
SQG34236.1|954752_955964_+	transporter major facilitator family protein	NA	NA	NA	NA	NA
SQG34237.1|956622_956844_+	putative transcriptional regulator	NA	A0A1L2BY72	Clostridium_phage	49.2	1.8e-08
SQG34238.1|957745_958975_+	cell division protein FtsW	NA	NA	NA	NA	NA
SQG34239.1|958994_961691_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
SQG34240.1|962103_963108_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQG34241.1|963176_964043_+	ABC transporter, membrane-spanning permease	NA	NA	NA	NA	NA
SQG34242.1|964039_964798_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.7	1.7e-13
SQG34243.1|964887_966648_+	DNA primase	NA	A0A1S5RH72	Helicobacter_phage	29.0	1.0e-45
SQG34244.1|966650_967760_+	RNA polymerase sigma factor RpoD	NA	F4YCU2	Synechococcus_phage	38.5	2.0e-36
SQG34245.1|967773_968103_+	metal-sulfur cluster biosynthesis protein	NA	NA	NA	NA	NA
SQG34246.1|968217_969261_+	glycosyl transferase CpoA	NA	NA	NA	NA	NA
SQG34247.1|969276_970602_+	glycosyltransferase, group 1 family protein	NA	NA	NA	NA	NA
SQG34248.1|970632_970809_+	putative stress-responsive transcriptional regulator	NA	NA	NA	NA	NA
SQG34249.1|970867_971002_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34250.1|971065_972376_+	GTP-binding protein	NA	NA	NA	NA	NA
SQG34251.1|972385_972544_+	putative extracellular protein	NA	NA	NA	NA	NA
SQG34252.1|972594_973098_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	92.6	2.2e-83
SQG34253.1|973133_973382_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	75.9	2.0e-24
SQG34254.1|973378_973933_-|transposase	IS1167 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	96.4	6.7e-89
SQG34255.1|975165_976425_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2	NA	NA	NA	NA	NA
SQG34256.1|976440_976992_+	acetyltransferase	NA	NA	NA	NA	NA
SQG34257.1|976984_978262_+	DRTGG domain/CBS domain-containing protein	NA	NA	NA	NA	NA
SQG34258.1|978277_979138_+	methionyl aminopeptidase	NA	NA	NA	NA	NA
SQG34259.1|979236_979917_+|transposase	degenerate transposase (orf1)	transposase	NA	NA	NA	NA
SQG34260.1|979931_980321_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG34261.1|980511_982803_+	ATP-dependent DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.1	9.5e-129
SQG34262.1|982845_983526_+	DNA repair protein RadC	NA	NA	NA	NA	NA
SQG34263.1|983522_984212_-	glutamine amidotransferase, class I	NA	NA	NA	NA	NA
SQG34264.1|984229_984871_-	DNA-binding protein	NA	NA	NA	NA	NA
SQG34265.1|984953_985169_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34266.1|985176_985524_-	cytosolic protein	NA	NA	NA	NA	NA
SQG34267.1|985528_986644_-	aminotransferase class-V	NA	H7BUW1	unidentified_phage	36.8	1.0e-27
SQG34268.1|986653_987613_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	32.8	9.3e-38
SQG34269.1|987725_988295_-	adenylate cyclase	NA	NA	NA	NA	NA
SQG34270.1|988422_989094_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQG34271.1|989077_989896_+	putative sugar kinase	NA	NA	NA	NA	NA
SQG34272.1|989892_990789_+	23S_rRNA pseudouridine synthase	NA	NA	NA	NA	NA
SQG34273.1|990832_991807_+	phosphotransacetylase	NA	NA	NA	NA	NA
SQG34274.1|992068_992587_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	94.3	4.2e-85
>prophage 9
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	1021975	1087946	2039982	protease,transposase,bacteriocin	Enterococcus_phage(18.18%)	56	NA	NA
SQG34299.1|1021975_1022326_-|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
SQG34300.1|1022850_1026126_+	exonuclease RexB	NA	NA	NA	NA	NA
SQG34301.1|1026122_1029773_+	ATP-dependent exoDNAse subunit beta	NA	G3MA40	Bacillus_virus	25.1	8.8e-20
SQG34302.1|1029942_1031121_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34303.1|1031329_1037221_+|protease	immunoglobulin A1 protease	protease	NA	NA	NA	NA
SQG34304.1|1037679_1038531_+	GTP-binding protein	NA	NA	NA	NA	NA
SQG34305.1|1038517_1039297_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.6	9.6e-25
SQG34306.1|1039312_1040863_+	voltage-gated chloride channel family protein	NA	NA	NA	NA	NA
SQG34307.1|1041446_1042517_+	tyrosine recombinase	NA	A0A1B1IQT7	uncultured_Mediterranean_phage	29.9	3.1e-05
SQG34308.1|1042589_1043579_-	lipoate protein ligase A	NA	NA	NA	NA	NA
SQG34309.1|1043642_1045346_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
SQG34310.1|1045391_1046435_-	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
SQG34311.1|1046652_1047645_-	putative acetoin dehydrogenase	NA	NA	NA	NA	NA
SQG34312.1|1047660_1048629_-	acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha	NA	NA	NA	NA	NA
SQG34313.1|1048782_1050144_-	mate efflux family protein	NA	NA	NA	NA	NA
SQG34314.1|1050154_1050415_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34315.1|1050428_1051697_-	dihydroorotase	NA	NA	NA	NA	NA
SQG34316.1|1051709_1052174_-	Mutator mutT protein	NA	NA	NA	NA	NA
SQG34317.1|1052183_1052837_-	uracil-DNA glycosylase	NA	A0A286RUF9	Beluga_whale_alphaherpesvirus	38.3	2.8e-33
SQG34318.1|1052972_1053620_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34319.1|1053633_1054347_-	HAD superfamily hydrolase	NA	NA	NA	NA	NA
SQG34320.1|1054804_1054963_-	sugar phosphotransferase system (PTS), fructose family, IIA component	NA	NA	NA	NA	NA
SQG34321.1|1055032_1055185_-	sugar phosphotransferase system (PTS), fructose family, IIA component	NA	NA	NA	NA	NA
SQG34322.1|1055606_1058141_-	streptococcal histidine triad protein PhpA	NA	NA	NA	NA	NA
SQG34323.1|1058298_1060749_-	pneumococcal histidine triad protein A precursor	NA	NA	NA	NA	NA
SQG34324.1|1061003_1062728_-	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQG34325.1|1062742_1063006_-	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQG34326.1|1063356_1063575_+	nrdH-redoxin	NA	A0A0M7REK7	Lactobacillus_phage	45.9	2.0e-12
SQG34327.1|1063655_1065815_+	ribonucleoside-diphosphate reductase, alpha subunit	NA	A8E2R1	Enterococcus_phage	62.7	6.1e-263
SQG34328.1|1066002_1066965_+	ribonucleotide-diphosphate reductase, subunit beta	NA	A0A096XT60	Enterococcus_phage	68.4	2.0e-128
SQG34329.1|1067146_1067908_+	lactose phosphotransferase system repressor	NA	NA	NA	NA	NA
SQG34330.1|1068177_1068363_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34331.1|1068405_1069812_-	6-phospho-beta-galactosidase	NA	NA	NA	NA	NA
SQG34332.1|1070020_1071712_-	PTS system, lactose-specific IIBC	NA	NA	NA	NA	NA
SQG34333.1|1071711_1072029_-	PTS system lactose-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQG34334.1|1072064_1072901_-	transcription antiterminator LacT	NA	NA	NA	NA	NA
SQG34335.1|1073134_1074115_-	tagatose 1,6-diphosphate aldolase	NA	NA	NA	NA	NA
SQG34336.1|1074116_1075046_-	tagatose-6-phosphate kinase	NA	NA	NA	NA	NA
SQG34337.1|1075056_1075572_-	galactose-6-phosphate isomerase subunit LacB	NA	NA	NA	NA	NA
SQG34338.1|1075602_1076028_-	galactose-6-phosphate isomerase subunit LacA	NA	NA	NA	NA	NA
SQG34339.1|1076185_1076530_-	protein LacX, plasmid	NA	NA	NA	NA	NA
SQG34340.1|1076698_1077043_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG34341.1|1077027_1077501_-|transposase	degenerate transposase (orf1)	transposase	NA	NA	NA	NA
SQG34342.1|1077508_1077811_-	PTS system galactose-specific transporter subunit IIB	NA	NA	NA	NA	NA
SQG34343.1|1077848_1078121_-	phosphotransferase system sugar-specific EII component	NA	NA	NA	NA	NA
SQG34344.1|1078737_1080561_-	GTP-binding protein LepA	NA	A0A2K9L2P9	Tupanvirus	40.9	8.3e-19
SQG34345.1|1080639_1081368_-	serine/threonine protein phosphatase	NA	A0A1V0EC57	Caulobacter_phage	33.0	1.9e-14
SQG34346.1|1081369_1083037_-	DNA repair protein RecN	NA	NA	NA	NA	NA
SQG34347.1|1083043_1083436_-	transcriptional repressor protein	NA	NA	NA	NA	NA
SQG34348.1|1083467_1084283_-	rRNA methylase	NA	NA	NA	NA	NA
SQG34349.1|1084275_1085151_-	farnesyl diphosphate synthase	NA	NA	NA	NA	NA
SQG34350.1|1085147_1085360_-	exodeoxyribonuclease VII, small subunit	NA	NA	NA	NA	NA
SQG34351.1|1085337_1086678_-	exodeoxyribonuclease VII large subunit	NA	A0A1B3AYB4	Gordonia_phage	33.6	3.9e-34
SQG34352.1|1086805_1087444_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.9	8.4e-35
SQG34353.1|1087551_1087854_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQG34354.1|1087850_1087946_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 10
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	1148206	1195872	2039982	transposase,holin	Bacillus_phage(16.67%)	52	NA	NA
SQG34406.1|1148206_1148896_-|holin	CTP:phosphocholine cytidylyltransferase	holin	A0A127AW70	Bacillus_phage	45.0	3.4e-05
SQG34407.1|1148907_1149786_-	drug/metabolite transporter (DMT) superfamily permease	NA	NA	NA	NA	NA
SQG34408.1|1149775_1150645_-|holin	choline kinase	holin	NA	NA	NA	NA
SQG34409.1|1150661_1151684_-	zinc-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
SQG34410.1|1151688_1152396_-	cytidylyltransferase	NA	NA	NA	NA	NA
SQG34411.1|1152731_1154219_+	teichoic acid subunit flippase	NA	NA	NA	NA	NA
SQG34412.1|1154228_1155032_+|holin	phosphorylcholine transferase LicD1	holin	A0A1V0SD50	Indivirus	27.1	5.3e-10
SQG34413.1|1155033_1155843_+	licD2 protein	NA	A0A1V0SD50	Indivirus	30.3	9.1e-10
SQG34414.1|1156117_1159294_-	carbamoyl-phosphate synthase, large subunit	NA	NA	NA	NA	NA
SQG34415.1|1159606_1160686_-	carbamoyl-phosphate synthase, small subunit	NA	R4TGJ8	Halovirus	35.9	6.3e-59
SQG34416.1|1160735_1161659_-	aspartate carbamoyltransferase	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.7	5.1e-25
SQG34417.1|1161677_1162199_-	transcriptional attenuation of the pyrimidine operon/uracil phosphoribosyltransferase (bifunctional protein)	NA	NA	NA	NA	NA
SQG34418.1|1162409_1163039_-	endonuclease III (DNA repair), DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
SQG34419.1|1163038_1163581_-	putative metal-binding, possibly nucleic acid-binding protein	NA	NA	NA	NA	NA
SQG34420.1|1163750_1163891_+	BlpT protein, fusion	NA	NA	NA	NA	NA
SQG34421.1|1164306_1165866_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	27.0	1.6e-10
SQG34422.1|1166014_1166914_-	heat shock protein HtpX	NA	NA	NA	NA	NA
SQG34423.1|1166915_1167476_-	Cytoplasmic membrane protein LemA	NA	NA	NA	NA	NA
SQG34424.1|1167569_1168283_+	16S rRNA methyltransferase GidB	NA	NA	NA	NA	NA
SQG34425.1|1168634_1169918_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	35.3	4.0e-60
SQG34426.1|1170112_1171684_-	signal recognition particle protein	NA	NA	NA	NA	NA
SQG34427.1|1171695_1172028_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG34428.1|1172118_1172496_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG34429.1|1172567_1173872_+	dGTP triphosphohydrolase	NA	E3T4P8	Cafeteria_roenbergensis_virus	30.2	1.7e-26
SQG34430.1|1173884_1174691_+	hydrolase	NA	NA	NA	NA	NA
SQG34431.1|1174858_1175206_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQG34432.1|1175324_1175654_-	CrcB protein	NA	A0A2H4PQR0	Staphylococcus_phage	37.0	2.4e-09
SQG34433.1|1175647_1176022_-	CrcB protein	NA	NA	NA	NA	NA
SQG34434.1|1176018_1176285_-	chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
SQG34435.1|1176400_1176844_-	flavodoxin	NA	NA	NA	NA	NA
SQG34436.1|1176947_1177883_+	DHH subfamily 1 protein	NA	NA	NA	NA	NA
SQG34437.1|1177978_1178221_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQG34438.1|1178277_1178856_-	high-affinity Fe2+/Pb2+ permease	NA	NA	NA	NA	NA
SQG34439.1|1178830_1179835_-	peroxidase	NA	NA	NA	NA	NA
SQG34440.1|1179886_1180153_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQG34441.1|1180840_1182187_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
SQG34442.1|1182682_1182853_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQG34443.1|1182865_1183507_-	multidrug resistance protein 1 (ATP-binding cassettesub-family B member 1) (P-glycoprotein 1)(antigen)	NA	W8CYL7	Bacillus_phage	40.1	1.7e-19
SQG34444.1|1183778_1184216_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG34445.1|1184506_1184710_-	glucokinase	NA	NA	NA	NA	NA
SQG34446.1|1184727_1185441_-	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
SQG34447.1|1185549_1185645_-	N-acetylneuraminate lyase subunit, truncation	NA	NA	NA	NA	NA
SQG34448.1|1185676_1186084_-	cytidine deaminase	NA	NA	NA	NA	NA
SQG34449.1|1186371_1186860_-	phosphatidylglycerophosphatase A	NA	G3MBC5	Bacillus_virus	53.3	4.9e-35
SQG34450.1|1186864_1188274_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34451.1|1188283_1190266_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.2	3.1e-19
SQG34452.1|1190278_1191130_-	oligopeptide ABC transporter pemease protein	NA	NA	NA	NA	NA
SQG34453.1|1191146_1192097_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
SQG34454.1|1192206_1193835_-	oligopeptide ABC transporteroligopeptide-binding protein	NA	NA	NA	NA	NA
SQG34455.1|1193916_1194840_-	N-acetylneuraminate epimerase precursor	NA	NA	NA	NA	NA
SQG34456.1|1194863_1195562_-	N-acetylmannosamine-6-phosphate 2-epimerase 2 (ManNAc-6-P epimerase 2)	NA	NA	NA	NA	NA
SQG34457.1|1195608_1195872_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
>prophage 11
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	1292498	1327294	2039982	tRNA,transposase	Streptococcus_phage(20.0%)	42	NA	NA
SQG34554.1|1292498_1292804_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG34555.1|1293154_1293505_-|transposase	transposase, ISSmi4	transposase	NA	NA	NA	NA
SQG34556.1|1293485_1293671_-	IS66 family Orf1	NA	NA	NA	NA	NA
SQG34557.1|1293974_1295537_-	GMP synthase	NA	A0A1V0SH76	Hokovirus	32.8	1.4e-19
SQG34558.1|1295678_1296377_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQG34559.1|1296419_1297316_-	membrane protein	NA	NA	NA	NA	NA
SQG34560.1|1297324_1298263_-	beta-lactamase	NA	NA	NA	NA	NA
SQG34561.1|1298259_1298985_-	cppA protein	NA	NA	NA	NA	NA
SQG34562.1|1299068_1299704_-	lysophospholipase l1-like esterase	NA	A0A2K9L661	Tupanvirus	28.7	8.7e-08
SQG34563.1|1299705_1300533_-	hydrolase	NA	NA	NA	NA	NA
SQG34564.1|1300554_1300890_-	poly-gamma-glutamate biosynthesis protein	NA	NA	NA	NA	NA
SQG34565.1|1300890_1301403_-	enzyme of poly-gamma-glutamate biosynthesis	NA	A0A0N9SJ77	Staphylococcus_phage	32.4	1.4e-16
SQG34566.1|1302131_1302743_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
SQG34567.1|1302787_1303516_+	TrmH family RNA methyltransferase group 3	NA	NA	NA	NA	NA
SQG34568.1|1303554_1304466_-	thioredoxin reductase	NA	G3MA85	Bacillus_virus	51.8	4.5e-90
SQG34569.1|1304531_1304756_-	membrane associated protein	NA	NA	NA	NA	NA
SQG34570.1|1304833_1305577_-	aspartate/glutamate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
SQG34571.1|1305576_1306377_-	aspartate/glutamate ABC transporter permease	NA	NA	NA	NA	NA
SQG34572.1|1306534_1306891_-	ArsC family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
SQG34573.1|1306884_1307415_-	O6-methylguanine-DNA methyltransferase	NA	M1PFU9	Streptococcus_phage	54.3	1.4e-46
SQG34574.1|1307414_1307909_-	acetyltransferase, GNAT family protein	NA	M1PSC3	Streptococcus_phage	51.5	5.5e-42
SQG34575.1|1308043_1308490_+	BS_ykrK family protein	NA	NA	NA	NA	NA
SQG34576.1|1308486_1309134_+	hlyIII superfamily protein	NA	NA	NA	NA	NA
SQG34577.1|1309154_1309736_-	glutamine amidotransferase subunit PdxT	NA	NA	NA	NA	NA
SQG34578.1|1309736_1310612_-	pyridoxal biosynthesis lyase PdxS	NA	NA	NA	NA	NA
SQG34579.1|1310763_1312143_-	NADH oxidase	NA	NA	NA	NA	NA
SQG34580.1|1312436_1313360_+	thiamine biosynthesis lipoprotein	NA	NA	NA	NA	NA
SQG34581.1|1313419_1314025_+	NADPH-dependent FMN reductase domain-containing protein	NA	A0A2P0ZL77	Lactobacillus_phage	54.2	5.9e-54
SQG34582.1|1314042_1315287_+	flavin reductase	NA	A0A2P0ZL82	Lactobacillus_phage	52.7	3.8e-55
SQG34583.1|1315403_1315661_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQG34584.1|1315702_1317739_-|tRNA	glycyl-tRNA synthetase beta subunit	tRNA	NA	NA	NA	NA
SQG34585.1|1317998_1318916_-|tRNA	glycyl-tRNA synthetase alpha subunit	tRNA	NA	NA	NA	NA
SQG34586.1|1319109_1319499_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34587.1|1319480_1319870_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34588.1|1320142_1320985_-	2,5-diketo-D-gluconic acid reductase A	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.3e-51
SQG34589.1|1321098_1322541_-	peptidoglycan N-acetylglucosamine deacetylase A	NA	NA	NA	NA	NA
SQG34590.1|1323316_1324294_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
SQG34591.1|1324290_1325373_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.3	1.8e-37
SQG34592.1|1325531_1325945_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQG34593.1|1326023_1326512_-|transposase	IS3-Spn1 transposase, truncation	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	50.9	2.8e-38
SQG34594.1|1326487_1326856_-|transposase	degenerate transposase (Orf2)	transposase	A0A1B1P773	Bacillus_phage	53.6	1.2e-12
SQG34595.1|1327081_1327294_-|transposase	transposase orfA, ISSmu1	transposase	NA	NA	NA	NA
>prophage 12
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	1407981	1414735	2039982	protease	Streptococcus_phage(50.0%)	9	NA	NA
SQG34672.1|1407981_1408950_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	99.2	1.1e-65
SQG34673.1|1408983_1409895_-	putative sporulation transcription regulator whiA	NA	Q7AWZ3	Streptococcus_phage	99.7	1.5e-154
SQG34674.1|1409891_1410869_-	transporter	NA	A1IMD5	Streptococcus_phage	99.7	4.4e-184
SQG34675.1|1410865_1411756_-	P-loop-containing kinase	NA	A0A0R8VB27	Thermobifida_phage	29.8	6.7e-06
SQG34676.1|1411807_1412188_-	endoribonuclease L-PSP	NA	NA	NA	NA	NA
SQG34677.1|1412198_1412786_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQG34678.1|1412794_1414027_-|protease	ATP-dependent Clp protease, ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
SQG34679.1|1414058_1414229_-	membrane associated protein	NA	NA	NA	NA	NA
SQG34680.1|1414228_1414735_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	43.8	1.0e-27
>prophage 13
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	1648923	1673261	2039982	integrase,transposase,holin	Streptococcus_phage(33.33%)	28	1656906:1656922	1666131:1666147
SQG34915.1|1648923_1649442_+|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	93.0	7.0e-80
SQG34916.1|1649438_1649726_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	70.6	4.3e-23
SQG34917.1|1649722_1650241_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	94.3	4.2e-85
SQG34918.1|1650349_1651870_-|holin	choline transporter	holin	NA	NA	NA	NA
SQG34919.1|1651862_1652591_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.7	2.3e-28
SQG34920.1|1652605_1653370_-	lipoprotein	NA	NA	NA	NA	NA
SQG34921.1|1653373_1653817_-	transcriptional regulator, MarR family	NA	NA	NA	NA	NA
SQG34922.1|1654498_1654795_-	Enterocin A Immunity	NA	NA	NA	NA	NA
SQG34923.1|1654816_1655881_-	glutamyl aminopeptidase	NA	NA	NA	NA	NA
SQG34924.1|1656281_1656983_+	putative UDP-glucose 4-epimerase	NA	A0A2K9L1R4	Tupanvirus	35.7	4.6e-34
1656906:1656922	attL	AAAATATTTGGAGATGA	NA	NA	NA	NA
SQG34925.1|1657405_1658365_+	iron-compound ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	4.0e-57
SQG34926.1|1658354_1659311_+	ferric iron ABC transporter membrane-spanning permease	NA	NA	NA	NA	NA
SQG34927.1|1659307_1660060_+	ferrichrome transport ATP-binding protein FhuC	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.2	3.7e-13
SQG34928.1|1660155_1661121_+	iron-compound ABC transporter iron-compound-binding protein	NA	NA	NA	NA	NA
SQG34929.1|1661345_1661588_-	alpha-hemolysin family protein	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	7.8e-18
SQG34930.1|1661587_1662310_-	ribosomal large subunit pseudouridine synthase B	NA	NA	NA	NA	NA
SQG34931.1|1662296_1662866_-	segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
SQG34932.1|1662884_1663613_-	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
SQG34933.1|1663612_1664347_-|integrase	integrase	integrase	NA	NA	NA	NA
SQG34934.1|1664343_1664805_-	CBS domain-containing protein	NA	NA	NA	NA	NA
SQG34935.1|1664801_1665323_-	phosphodiesterase, family	NA	NA	NA	NA	NA
SQG34936.1|1665298_1666270_-	deoxyribonucleotide triphosphate pyrophosphatase/uncharacterised domain fusion protein	NA	C4N227	Ugandan_cassava_brown_streak_virus	29.9	4.9e-10
1666131:1666147	attR	TCATCTCCAAATATTTT	NA	NA	NA	NA
SQG34937.1|1666266_1667061_-	glutamate racemase, COG0796	NA	NA	NA	NA	NA
SQG34938.1|1667267_1667516_-	family protein	NA	NA	NA	NA	NA
SQG34939.1|1667657_1669283_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
SQG34940.1|1669460_1671428_-	trehalose PTS system, IIABC components	NA	NA	NA	NA	NA
SQG34941.1|1671612_1672323_+	trehalose operon repressor	NA	NA	NA	NA	NA
SQG34942.1|1672478_1673261_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	84.8	1.4e-116
>prophage 14
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	1691506	1743575	2039982	tRNA,protease,transposase,bacteriocin	Streptococcus_phage(45.45%)	52	NA	NA
SQG34957.1|1691506_1691944_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.2	1.9e-22
SQG34958.1|1698931_1700287_-	RNA methyltransferase	NA	E4ZFI6	Streptococcus_phage	33.7	5.3e-71
SQG34959.1|1700324_1701101_+	regulatory protein RecX	NA	NA	NA	NA	NA
SQG34960.1|1701189_1701723_+	UPF0374 protein SSU05	NA	NA	NA	NA	NA
SQG34961.1|1702076_1702283_-	putative transcriptional regulator	NA	NA	NA	NA	NA
SQG34962.1|1702442_1703672_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.6	1.7e-217
SQG34963.1|1703770_1705393_-	chaperone GroEL	NA	A0A219YK78	uncultured_virus	56.1	2.3e-153
SQG34964.1|1705408_1705693_-	CH10_SMI 10 kDa chaperonin (protein Cpn10)	NA	NA	NA	NA	NA
SQG34965.1|1705848_1706244_-	single-strand DNA-binding protein B	NA	A1EAD1	Streptococcus_phage	45.5	3.0e-27
SQG34966.1|1706321_1707083_-	3-oxoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	24.1	6.3e-05
SQG34967.1|1707115_1707742_-|tRNA	phenylalanyl-tRNA synthetase, beta subunit	tRNA	NA	NA	NA	NA
SQG34968.1|1707757_1708075_-	thioredoxin family protein	NA	NA	NA	NA	NA
SQG34969.1|1708071_1708371_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34970.1|1709059_1709734_-	putative uncharacterized conserved secreted protein	NA	NA	NA	NA	NA
SQG34971.1|1709739_1710186_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG34972.1|1710299_1710803_-	membrane-associated phospholipid phosphatase	NA	NA	NA	NA	NA
SQG34973.1|1710799_1711162_-	Lin0147	NA	NA	NA	NA	NA
SQG34974.1|1711227_1712259_-	multidrug resistance protein 3	NA	W8CYL7	Bacillus_phage	28.5	4.9e-16
SQG34975.1|1712265_1712436_-	ABC transporter permease	NA	NA	NA	NA	NA
SQG34976.1|1712439_1713087_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQG34977.1|1713228_1713573_-	transcriptional regulator, MarR family	NA	NA	NA	NA	NA
SQG34978.1|1713696_1714413_-	glucose-1-phosphate adenylyl transferase	NA	NA	NA	NA	NA
SQG34979.1|1715293_1716709_-	pneumolysin	NA	NA	NA	NA	NA
SQG34980.1|1716719_1717130_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34981.1|1717122_1717731_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34982.1|1717736_1718201_-	membrane protein	NA	NA	NA	NA	NA
SQG34983.1|1718325_1718457_+	mobile genetic element	NA	NA	NA	NA	NA
SQG34984.1|1719489_1719750_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34985.1|1719808_1720360_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34986.1|1720349_1720547_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34987.1|1720550_1721345_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34988.1|1721752_1722178_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG34989.1|1722306_1722666_-	zinc metallopeptidase	NA	NA	NA	NA	NA
SQG34990.1|1722711_1722918_-	zinc metallopeptidase	NA	NA	NA	NA	NA
SQG34991.1|1723436_1724393_-	autolysin	NA	A0A1S5SE15	Streptococcus_phage	95.6	6.0e-154
SQG34992.1|1724768_1726139_-	damage inducible DinF protein	NA	NA	NA	NA	NA
SQG34993.1|1726445_1727612_-	protein RecA	NA	A0A0S2MVG1	Bacillus_phage	61.7	5.9e-119
SQG34994.1|1727666_1728923_-	damage inducible protein CinA	NA	NA	NA	NA	NA
SQG34995.1|1729007_1730024_-	regulator of lytrabc operon	NA	NA	NA	NA	NA
SQG34996.1|1730031_1730550_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQG34997.1|1730539_1730983_-	putative ATPase	NA	NA	NA	NA	NA
SQG34998.1|1731068_1731689_-	lipoprotein, putative	NA	NA	NA	NA	NA
SQG34999.1|1732071_1732935_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG35000.1|1733126_1733297_+	secreted protein	NA	NA	NA	NA	NA
SQG35001.1|1733399_1733624_+	type 2 lantibiotic, SP_1948 family	NA	NA	NA	NA	NA
SQG35002.1|1733630_1733819_+	type 2 lantibiotic, SP_1948 family	NA	NA	NA	NA	NA
SQG35003.1|1733934_1736925_+	lantibiotic modifying enzyme	NA	NA	NA	NA	NA
SQG35004.1|1737274_1737979_+	putative reductase	NA	NA	NA	NA	NA
SQG35005.1|1737959_1738889_+|protease	Zn-dependent proteases	protease	NA	NA	NA	NA
SQG35006.1|1738885_1740994_+|bacteriocin	bacteriocin secretion/processing ATP-binding protein	bacteriocin	W8CYL7	Bacillus_phage	27.7	2.2e-23
SQG35007.1|1741017_1742757_+|protease	lantibiotic leader peptide processing serine protease	protease	A0A2H4PQH1	Staphylococcus_phage	39.5	4.2e-52
SQG35008.1|1742819_1743575_+|bacteriocin	bacteriocin-associated integral membrane protein	bacteriocin	NA	NA	NA	NA
>prophage 15
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	1870417	1930563	2039982	tRNA,protease,transposase,holin	Bacillus_phage(27.27%)	60	NA	NA
SQG35126.1|1870417_1872109_+|tRNA	arginyl-tRNA synthetase(arginine--tRNA ligase) (ARGRS)	tRNA	A0A2I2L3K1	Orpheovirus	32.3	1.6e-80
SQG35127.1|1872423_1872813_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG35128.1|1872976_1873453_+	Uncharacterized conserved protein	NA	A0A291ATU0	Pandoravirus	34.6	1.0e-16
SQG35129.1|1873536_1874244_+	response regulator	NA	W8CYM9	Bacillus_phage	39.6	1.4e-38
SQG35130.1|1874244_1875576_+	histidine kinase PnpS	NA	W8CYF6	Bacillus_phage	34.9	1.9e-33
SQG35131.1|1875742_1876618_+	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQG35132.1|1876735_1877599_+	phosphate ABC transporter permeae PstC	NA	NA	NA	NA	NA
SQG35133.1|1877591_1878407_+	phosphate ABC transporter	NA	NA	NA	NA	NA
SQG35134.1|1878408_1879161_+	phosphate transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	27.4	3.9e-15
SQG35135.1|1879175_1879826_+	phosphate transport system regulatory protein PhoU	NA	NA	NA	NA	NA
SQG35136.1|1879893_1880310_+|transposase	transposase, IS1380-Spn1 related, truncation	transposase	NA	NA	NA	NA
SQG35137.1|1880432_1880915_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG35138.1|1881084_1882101_+	glycerol-3-phosphate dehydrogenase (NAD(P)+)	NA	NA	NA	NA	NA
SQG35139.1|1882122_1883022_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	50.3	3.1e-75
SQG35140.1|1883088_1883766_-	peptidase, S54	NA	NA	NA	NA	NA
SQG35141.1|1883749_1884289_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
SQG35142.1|1884300_1885431_-	GlpG protein (membrane protein of glp regulon)	NA	NA	NA	NA	NA
SQG35143.1|1885498_1886197_-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	NA	NA	NA	NA	NA
SQG35144.1|1886426_1887338_-	drug/metabolite transporter (DMT) superfamily permease	NA	NA	NA	NA	NA
SQG35145.1|1887402_1889868_-	penicillin-binding protein 1B	NA	NA	NA	NA	NA
SQG35146.1|1890009_1891266_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A2C9CYK4	Yersinia_phage	41.5	1.5e-75
SQG35147.1|1891343_1893407_-	P-type ATPase-metal/cation transporter	NA	E4ZFI9	Streptococcus_phage	26.0	2.2e-52
SQG35148.1|1893408_1893687_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG35149.1|1893838_1894687_+	23S_rRNA m1G745 methyltransferase	NA	NA	NA	NA	NA
SQG35150.1|1895485_1896058_+	membrane protein	NA	NA	NA	NA	NA
SQG35151.1|1896598_1896745_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG35152.1|1897102_1899361_-	maltodextrin phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	37.5	5.7e-09
SQG35153.1|1899386_1900904_-	4-alpha-glucanotransferase (amylomaltase)	NA	NA	NA	NA	NA
SQG35154.1|1901453_1902725_+	maltose/maltodextrin ABC transporter maltose /maltodextrin-binding protein	NA	NA	NA	NA	NA
SQG35155.1|1902835_1904128_+	maltodextrin ABC transporter permease	NA	NA	NA	NA	NA
SQG35156.1|1904129_1904972_+	maltodextrin ABC transporter permease	NA	NA	NA	NA	NA
SQG35157.1|1905224_1906025_+	malA-protein	NA	NA	NA	NA	NA
SQG35158.1|1906034_1907021_+	maltose operon transcriptional repressor	NA	NA	NA	NA	NA
SQG35159.1|1907312_1908254_-	YitT family protein	NA	NA	NA	NA	NA
SQG35160.1|1908231_1909995_-|tRNA	aspartyl-tRNA synthetase (aspartate-tRNA ligase)	tRNA	A0A1V0SJ84	Klosneuvirus	26.4	5.0e-13
SQG35161.1|1910113_1910305_-	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
SQG35162.1|1910346_1910577_-	excreted peptide	NA	NA	NA	NA	NA
SQG35163.1|1910594_1911236_-|protease	caax amino protease family protein	protease	NA	NA	NA	NA
SQG35164.1|1911247_1911982_-	brp/Blh family beta-carotene 15,15'-monooxygenase	NA	NA	NA	NA	NA
SQG35165.1|1911984_1912182_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG35166.1|1912181_1912397_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG35167.1|1912397_1912712_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG35168.1|1912861_1913041_-	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
SQG35169.1|1913037_1914327_-|tRNA	histidyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQG35170.1|1914404_1915652_-	major facilitator superfamily permease	NA	NA	NA	NA	NA
SQG35171.1|1915841_1916693_-	transcriptional activator, Rgg/GadR/MutR family protein	NA	NA	NA	NA	NA
SQG35172.1|1916816_1917158_+	domain of uncharacterised function protein	NA	NA	NA	NA	NA
SQG35173.1|1917366_1919070_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
SQG35174.1|1919302_1920232_-	transketolase c-terminal section	NA	NA	NA	NA	NA
SQG35175.1|1920231_1921089_-	transketolase n-terminal section	NA	A0A2K9L6P9	Tupanvirus	31.2	5.4e-29
SQG35176.1|1921092_1922439_-	PTS system, IIC component	NA	NA	NA	NA	NA
SQG35177.1|1922451_1922736_-	PTS system, IIB component	NA	NA	NA	NA	NA
SQG35178.1|1922739_1924770_-	transcriptional regulator, BglG family	NA	NA	NA	NA	NA
SQG35179.1|1924960_1925968_+	integral membrane protein	NA	NA	NA	NA	NA
SQG35180.1|1925970_1926171_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG35181.1|1926322_1926505_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
SQG35182.1|1926520_1926670_+	LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent	NA	NA	NA	NA	NA
SQG35183.1|1927149_1929222_-|holin	choline binding protein PcpA	holin	NA	NA	NA	NA
SQG35184.1|1929578_1930148_+|transposase	IS1381, transposase OrfA	transposase	NA	NA	NA	NA
SQG35185.1|1930173_1930563_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 16
LS483390	Streptococcus pneumoniae strain NCTC13276 genome assembly, chromosome: 1	2039982	1988910	2026393	2039982	protease,transposase,holin	Streptococcus_phage(50.0%)	38	NA	NA
SQG35232.1|1988910_1991016_-|holin	choline binding protein A	holin	NA	NA	NA	NA
SQG35233.1|1991094_1991622_-	membrane protein	NA	NA	NA	NA	NA
SQG35234.1|1991704_1993036_-	signal transduction histidine kinase	NA	NA	NA	NA	NA
SQG35235.1|1993032_1993686_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SQG35236.1|1994327_1994471_-	class III stress response-related ATPase, truncation	NA	NA	NA	NA	NA
SQG35237.1|1994471_1996760_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	40.7	4.0e-119
SQG35238.1|1996761_1997220_-	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
SQG35239.1|1997338_1998067_-	nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.2	1.0e-28
SQG35240.1|1998066_1999074_-	ABC transportersubstrate-binding protein, nitrate/sulfonate/bicarbonate transport	NA	NA	NA	NA	NA
SQG35241.1|1999111_1999870_-	ABC transporter permease, nitrate/sulfonate/bicarbonate transport	NA	NA	NA	NA	NA
SQG35242.1|1999832_2000123_-	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQG35243.1|2000378_2001725_-|holin	choline binding protein D	holin	NA	NA	NA	NA
SQG35244.1|2001813_2002080_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQG35245.1|2002081_2003434_-	DNA replication protein DnaC	NA	A0A1P8VVQ6	Streptococcus_phage	61.3	6.3e-149
SQG35246.1|2003477_2003930_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
SQG35247.1|2003926_2005900_-	DHH family protein	NA	NA	NA	NA	NA
SQG35248.1|2006035_2006584_-	ribosome-associated protein	NA	NA	NA	NA	NA
SQG35249.1|2006663_2007326_-	involved in transformation	NA	NA	NA	NA	NA
SQG35250.1|2007322_2008621_-	helicase ComFA	NA	A0A1X9I5S6	Streptococcus_phage	66.6	9.3e-166
SQG35251.1|2008676_2009312_+	Xaa-Pro dipeptidase	NA	A0A1X9I5T8	Streptococcus_phage	71.5	4.4e-76
SQG35252.1|2009596_2010517_+	cysteine synthase	NA	A0A1X9I5K7	Streptococcus_phage	80.7	1.3e-137
SQG35253.1|2010713_2010983_-|transposase	transposase-like protein, ISSpn_AP200_6	transposase	NA	NA	NA	NA
SQG35254.1|2011567_2011855_-|transposase	transposase, ISSmi4	transposase	NA	NA	NA	NA
SQG35255.1|2012100_2013141_-	elongation factor Ts	NA	NA	NA	NA	NA
SQG35256.1|2013206_2013986_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
SQG35257.1|2014209_2015388_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
SQG35258.1|2015481_2015976_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
SQG35259.1|2015975_2016794_-	cell shape determining protein MreC	NA	NA	NA	NA	NA
SQG35260.1|2016852_2017647_-	ABC transporter permease, cobalt transport	NA	NA	NA	NA	NA
SQG35261.1|2017639_2018479_-	cobalt ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.6	1.5e-15
SQG35262.1|2018463_2019291_-	ABCtransporter ATP-binding protein cobalt transport	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
SQG35263.1|2019287_2019833_-	phosphatidylglycerophosphate synthase	NA	NA	NA	NA	NA
SQG35264.1|2019843_2020665_-	transcriptional regulation protein	NA	NA	NA	NA	NA
SQG35265.1|2020706_2021990_-|protease	zinc-dependent protease	protease	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	1.1e-17
SQG35266.1|2021986_2023237_-|protease	zinc-dependent protease	protease	A0A1X9I714	Streptococcus_phage	42.3	3.5e-93
SQG35267.1|2023395_2023764_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
SQG35268.1|2023766_2024864_+	recombination protein recF	NA	NA	NA	NA	NA
SQG35269.1|2024914_2026393_-	inosine-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
