The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483394	Streptococcus pyogenes strain NCTC10880 genome assembly, chromosome: 1	1785401	36589	48951	1785401		Synechococcus_phage(28.57%)	8	NA	NA
SQG38212.1|36589_40363_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.0	1.6e-40
SQG38218.1|40523_41978_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.1	2.0e-52
SQG38221.1|42005_43028_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.4	1.2e-62
SQG38223.1|43195_43750_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
SQG38225.1|43933_45481_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
SQG38229.1|45539_46664_-	bacterial SH3 domain protein	NA	A0A1S5PRY3	Streptococcus_phage	33.1	7.7e-07
SQG38231.1|46826_48182_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQG38233.1|48339_48951_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	2.4e-18
>prophage 2
LS483394	Streptococcus pyogenes strain NCTC10880 genome assembly, chromosome: 1	1785401	338542	344575	1785401		Streptococcus_phage(100.0%)	9	NA	NA
SQG38986.1|338542_339178_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.0e-65
SQG38989.1|339195_340071_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
SQG38991.1|340089_340329_+	Tpl protein	NA	NA	NA	NA	NA
SQG38993.1|340733_341057_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQG38994.1|341061_341925_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.3	6.5e-115
SQG38996.1|341951_342344_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG38997.1|342390_343020_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQG38998.1|343317_343674_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	66.7	2.8e-40
SQG38999.1|343747_344575_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.5	2.9e-128
>prophage 3
LS483394	Streptococcus pyogenes strain NCTC10880 genome assembly, chromosome: 1	1785401	352920	397407	1785401	tRNA,protease,transposase	Mycobacterium_phage(16.67%)	50	NA	NA
SQG39003.1|352920_354918_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.0	1.0e-86
SQG39004.1|355416_356430_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.4	4.2e-97
SQG39005.1|356433_356922_+	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.7e-11
SQG39006.1|356888_359069_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.2	2.1e-170
SQG39007.1|359274_360027_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQG39008.1|360483_361110_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG39009.1|361360_361834_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG39010.1|362389_362830_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG39011.1|363588_364419_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	48.5	3.0e-69
SQG39012.1|364419_364614_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG39013.1|364934_365468_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG39014.1|365594_365927_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG39015.1|366166_366418_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQG39016.1|366511_367156_-	phage protein	NA	NA	NA	NA	NA
SQG39017.1|367516_367753_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQG39018.1|367745_368444_+	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.2	1.6e-10
SQG39019.1|368519_369479_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQG39020.1|369811_371149_+	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQG39021.1|371321_372704_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.0	8.5e-32
SQG39022.1|372734_373289_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQG39023.1|373288_373540_+	membrane protein	NA	NA	NA	NA	NA
SQG39024.1|373558_374254_+	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQG39025.1|374404_374746_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG39026.1|374846_375494_-	metalloregulator ScaR	NA	NA	NA	NA	NA
SQG39027.1|375639_376572_+	manganese-binding protein	NA	NA	NA	NA	NA
SQG39028.1|376635_377361_+	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.1e-17
SQG39029.1|377361_378216_+	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQG39030.1|378363_379170_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
SQG39031.1|379386_381792_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
SQG39032.1|381862_382216_-	integral membrane protein	NA	NA	NA	NA	NA
SQG39033.1|382438_382735_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG39034.1|382718_383507_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG39035.1|383720_384146_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQG39036.1|384251_384941_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQG39037.1|385261_385990_+	uridylate kinase	NA	NA	NA	NA	NA
SQG39038.1|386018_386576_+	ribosome recycling factor	NA	NA	NA	NA	NA
SQG39039.1|386683_387541_+	s1 RNA binding domain	NA	NA	NA	NA	NA
SQG39040.1|387613_388123_+	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQG39041.1|388119_388335_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG39042.1|388490_389639_+	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.4e-16
SQG39043.1|389951_391724_+	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQG39044.1|391882_392935_+	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQG39045.1|392980_393556_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQG39046.1|393714_394212_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQG39047.1|394192_394600_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQG39049.1|394719_395616_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQG39050.1|395635_396112_+	phosphohydrolase	NA	NA	NA	NA	NA
SQG39053.1|396417_396672_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG39055.1|396838_396988_-|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQG39057.1|396984_397407_-|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
>prophage 4
LS483394	Streptococcus pyogenes strain NCTC10880 genome assembly, chromosome: 1	1785401	616457	627059	1785401		Streptococcus_phage(57.14%)	9	NA	NA
SQG39479.1|616457_618668_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.9	6.5e-268
SQG39480.1|618775_619939_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQG39483.1|619935_620622_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQG39486.1|620715_621882_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQG39488.1|621942_622284_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
SQG39490.1|622504_623857_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	4.5e-30
SQG39493.1|623943_625212_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQG39495.1|625241_625682_-	membrane protein	NA	NA	NA	NA	NA
SQG39497.1|625916_627059_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.8e-24
>prophage 5
LS483394	Streptococcus pyogenes strain NCTC10880 genome assembly, chromosome: 1	1785401	653988	690302	1785401	head,tRNA,protease,transposase	Bacillus_phage(30.77%)	34	NA	NA
SQG39560.1|653988_654720_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQG39562.1|654719_655712_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
SQG39565.1|655889_656948_+	regulatory protein	NA	NA	NA	NA	NA
SQG39567.1|656960_657884_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQG39569.1|658184_658853_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.7	2.2e-17
SQG39571.1|658849_659761_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQG39573.1|659757_661704_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQG39575.1|661802_662396_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.5e-11
SQG39578.1|662546_663254_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	1.9e-11
SQG39580.1|663261_663498_-|transposase	degenerate transposase	transposase	A0A1B1P773	Bacillus_phage	51.7	1.1e-05
SQG39582.1|664179_665205_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQG39584.1|665704_665881_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQG39586.1|666108_666489_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG39588.1|666488_667337_+	degV family protein	NA	NA	NA	NA	NA
SQG39590.1|667461_668670_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.3	9.0e-38
SQG39593.1|668666_670544_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.7	3.9e-64
SQG39595.1|671435_671846_+	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQG39596.1|671927_673940_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQG39598.1|674159_674810_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQG39600.1|674812_675481_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQG39603.1|675489_676722_+	two component system histidine kinase	NA	NA	NA	NA	NA
SQG39605.1|677015_677894_+	mevalonate kinase	NA	NA	NA	NA	NA
SQG39607.1|677875_678820_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQG39609.1|678812_679826_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQG39611.1|679812_680802_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQG39613.1|681031_682309_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQG39615.1|682295_683471_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQG39617.1|683679_684519_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQG39619.1|684598_685096_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQG39621.1|685115_685286_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG39623.1|685415_686645_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
SQG39625.1|686654_687254_+	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQG39627.1|687401_688145_+	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQG39629.1|688202_690302_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.2	4.3e-120
>prophage 6
LS483394	Streptococcus pyogenes strain NCTC10880 genome assembly, chromosome: 1	1785401	985920	1041107	1785401	tRNA,transposase	Streptococcus_phage(33.33%)	56	NA	NA
SQG40256.1|985920_986172_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG40265.1|986113_986701_+|transposase	truncated transposase	transposase	Q9MBM9	Staphylococcus_prophage	39.1	1.0e-26
SQG40267.1|987214_988198_-	alpha/beta fold family hydrolase	NA	NA	NA	NA	NA
SQG40268.1|988228_989479_-	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA	NA
SQG40270.1|989471_989711_-	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
SQG40273.1|989728_990985_-	Protein dltB	NA	NA	NA	NA	NA
SQG40275.1|990981_992520_-	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	28.2	8.5e-41
SQG40278.1|992531_992675_-	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA	NA
SQG40280.1|992938_994930_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
SQG40282.1|995122_997297_+	glutamine-binding protein/glutamine transpor tsystem permease protein	NA	NA	NA	NA	NA
SQG40284.1|997296_998037_+	glutamine transport ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	42.1	1.5e-35
SQG40286.1|998184_998337_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG40288.1|998333_999713_-	PTS system cellobiose-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQG40290.1|999890_1000340_-	Domain of uncharacterised function (DUF3284)	NA	NA	NA	NA	NA
SQG40292.1|1000336_1000672_-	PTS system cellobiose-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQG40294.1|1000674_1000986_-	PTS system cellobiose-specific component IIB	NA	NA	NA	NA	NA
SQG40296.1|1001008_1003003_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQG40298.1|1003108_1004203_-	outer surface protein	NA	NA	NA	NA	NA
SQG40300.1|1004211_1005612_-	beta-glucosidase	NA	NA	NA	NA	NA
SQG40302.1|1005836_1006532_+	nicotinamide mononucleotide transporter	NA	NA	NA	NA	NA
SQG40304.1|1006536_1006695_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG40306.1|1006763_1008077_-	GTPase ObgE	NA	NA	NA	NA	NA
SQG40308.1|1008133_1008262_-	membrane protein	NA	NA	NA	NA	NA
SQG40310.1|1008550_1009018_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG40312.1|1009038_1009845_+|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	49.6	4.9e-64
SQG40314.1|1009893_1010625_-	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQG40315.1|1010739_1011105_+	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQG40317.1|1011224_1012445_-	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQG40319.1|1012818_1014303_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG40321.1|1014409_1014811_-	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQG40323.1|1014895_1015135_-	phosphorylase Pnp/Udp family protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	96.2	4.4e-37
SQG40326.1|1015596_1015689_-	phosphorylase Pnp/Udp family protein	NA	NA	NA	NA	NA
SQG40328.1|1015727_1017083_-|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	D0R096	Streptococcus_phage	98.7	5.6e-254
SQG40330.1|1017164_1018616_-	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQG40331.1|1018823_1019315_-	shikimate kinase	NA	NA	NA	NA	NA
SQG40333.1|1019307_1020591_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQG40335.1|1020701_1021667_-	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQG40337.1|1021668_1022529_-	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQG40338.1|1022544_1023828_-	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQG40340.1|1023836_1024379_-	acetyltransferase family protein	NA	NA	NA	NA	NA
SQG40343.1|1024928_1025342_-	Mag protein precursor	NA	NA	NA	NA	NA
SQG40345.1|1025604_1026033_-	Beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
SQG40347.1|1026160_1026280_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG40349.1|1026694_1028485_-	glycosyl hydrolase, family 3	NA	NA	NA	NA	NA
SQG40352.1|1028615_1029419_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
SQG40355.1|1029687_1030527_-	D-mannonate oxidoreductase	NA	NA	NA	NA	NA
SQG40357.1|1030541_1031636_-	mannonate dehydratase	NA	NA	NA	NA	NA
SQG40360.1|1031730_1033128_-	uronate isomerase	NA	NA	NA	NA	NA
SQG40366.1|1033157_1033775_-	4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase	NA	NA	NA	NA	NA
SQG40368.1|1033902_1034574_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQG40370.1|1034615_1036406_-	Beta-glucuronidase	NA	B9U1V4	Vaccinia_virus	44.8	1.6e-136
SQG40372.1|1036428_1037457_-	2-dehydro-3-deoxygluconokinase	NA	NA	NA	NA	NA
SQG40374.1|1037609_1038974_-	sugar/sodium symporter	NA	NA	NA	NA	NA
SQG40376.1|1038919_1039153_-	sugar/sodium symporter	NA	NA	NA	NA	NA
SQG40377.1|1039642_1040302_+|transposase	truncated transposase	transposase	A0A1X9I5T2	Streptococcus_phage	90.8	1.4e-114
SQG40379.1|1040279_1041107_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	92.9	2.5e-132
>prophage 7
LS483394	Streptococcus pyogenes strain NCTC10880 genome assembly, chromosome: 1	1785401	1063992	1089018	1785401	tRNA,transposase,integrase,protease	Bacillus_phage(16.67%)	27	1061246:1061260	1074851:1074865
1061246:1061260	attL	GCAAACCAATGTGAA	NA	NA	NA	NA
SQG40417.1|1063992_1064286_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG40419.1|1064318_1064888_+|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	39.0	2.0e-27
SQG40420.1|1064927_1065149_+|transposase	transposase	transposase	U5P429	Shigella_phage	41.4	2.3e-08
SQG40422.1|1065241_1065937_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQG40424.1|1065955_1066717_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQG40426.1|1066713_1066929_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQG40428.1|1067289_1069908_-|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	33.9	1.5e-61
SQG40430.1|1070294_1071350_-	foldase protein prsA 1	NA	NA	NA	NA	NA
SQG40432.1|1071412_1072084_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	5.4e-08
SQG40434.1|1072185_1073382_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQG40436.1|1073757_1075563_-	oligoendopeptidase F	NA	NA	NA	NA	NA
1074851:1074865	attR	TTCACATTGGTTTGC	NA	NA	NA	NA
SQG40438.1|1075575_1076538_-	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQG40440.1|1076832_1077549_-	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQG40442.1|1077667_1078372_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQG40444.1|1078573_1079602_+|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQG40446.1|1079641_1080829_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG40448.1|1080942_1081365_-	S11 family peptidase	NA	NA	NA	NA	NA
SQG40450.1|1081382_1081520_-	S11 family peptidase	NA	NA	NA	NA	NA
SQG40452.1|1081516_1081765_-	lipoprotein	NA	NA	NA	NA	NA
SQG40454.1|1081793_1081976_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG40455.1|1082142_1082748_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.7	1.8e-58
SQG40457.1|1082844_1083885_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SQG40460.1|1083955_1086199_-	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.2	5.2e-55
SQG40462.1|1086179_1086842_-	comE operon 1 domain-containing protein	NA	NA	NA	NA	NA
SQG40463.1|1087041_1087782_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQG40465.1|1087949_1088246_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG40467.1|1088229_1089018_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 8
LS483394	Streptococcus pyogenes strain NCTC10880 genome assembly, chromosome: 1	1785401	1104140	1151600	1785401	capsid,head,terminase,tail,integrase	Streptococcus_phage(53.7%)	64	1107580:1107599	1148985:1149004
SQG40495.1|1104140_1105076_+	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	45.1	4.6e-66
SQG40497.1|1105375_1107238_-	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	34.3	4.6e-89
1107580:1107599	attL	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQG40499.1|1107768_1107951_-	paratox	NA	A3F673	Streptococcus_phage	81.7	2.0e-21
SQG40501.1|1108190_1108949_+	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQG40503.1|1109059_1109767_+	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
SQG40505.1|1109835_1110588_-	phage-associated cell wall hydrolase	NA	A3F665	Streptococcus_phage	97.2	2.1e-141
SQG40507.1|1110589_1110922_-	N-acetylmuramoyl-L-alanine amidase	NA	A3F664	Streptococcus_phage	100.0	5.7e-51
SQG40509.1|1110923_1111253_-	Uncharacterised protein	NA	A3F663	Streptococcus_phage	99.0	6.2e-50
SQG40510.1|1111263_1111875_-	phage protein	NA	Q938J7	Temperate_phage	88.2	3.7e-80
SQG40512.1|1111877_1112306_-	phage protein	NA	A3F661	Streptococcus_phage	92.2	2.8e-66
SQG40516.1|1112314_1114138_-	phage protein	NA	Q938J9	Temperate_phage	79.8	4.2e-212
SQG40518.1|1114148_1114463_-	phage protein	NA	NA	NA	NA	NA
SQG40520.1|1114464_1115688_-	phage protein	NA	A3F657	Streptococcus_phage	41.3	6.7e-49
SQG40522.1|1115684_1117832_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	94.9	0.0e+00
SQG40523.1|1117828_1118545_-	phage protein	NA	Q938K2	Temperate_phage	98.7	3.6e-135
SQG40525.1|1118541_1121802_-	phage protein	NA	Q938K3	Temperate_phage	98.5	0.0e+00
SQG40527.1|1121791_1122373_-	bacteriophage Gp15 family protein	NA	Q938K4	Temperate_phage	99.5	4.9e-106
SQG40528.1|1122376_1122811_-	phage protein	NA	Q938K5	Temperate_phage	99.3	2.9e-71
SQG40530.1|1122849_1123335_-|tail	major tail shaft protein	tail	Q938K6	Temperate_phage	100.0	1.6e-86
SQG40531.1|1123334_1123733_-|capsid	minor capsid protein	capsid	Q79S87	Temperate_phage	100.0	3.5e-71
SQG40533.1|1123729_1124086_-	phage protein	NA	Q79S88	Temperate_phage	100.0	4.5e-62
SQG40535.1|1124085_1124445_-|capsid	minor capsid protein - phage associated	capsid	Q79S86	Temperate_phage	100.0	1.0e-58
SQG40536.1|1124407_1124824_-	phage protein	NA	Q938K7	Temperate_phage	98.2	3.6e-55
SQG40539.1|1124877_1125696_-|head	putative major head protein	head	Q79S85	Temperate_phage	100.0	4.0e-146
SQG40541.1|1125699_1126308_-	phage protein	NA	Q938K8	Temperate_phage	95.0	4.0e-95
SQG40543.1|1126439_1126706_-	putative phage associated protein	NA	Q938K9	Temperate_phage	95.5	1.1e-36
SQG40545.1|1126767_1127007_-	phage protein	NA	Q938L0	Temperate_phage	100.0	2.8e-36
SQG40547.1|1126978_1128457_-|capsid	capsid protein	capsid	Q938L1	Temperate_phage	99.6	9.0e-274
SQG40548.1|1128461_1129964_-|capsid	Minor capsid protein	capsid	Q938L2	Temperate_phage	99.6	5.9e-281
SQG40551.1|1129977_1131252_-|terminase	phage terminase	terminase	A0A1S5SA45	Streptococcus_phage	84.1	1.5e-216
SQG40552.1|1131253_1131949_-	phage protein	NA	A0A2H4J4R0	uncultured_Caudovirales_phage	34.5	4.4e-29
SQG40554.1|1132068_1132485_-	phage protein	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
SQG40556.1|1132468_1132615_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG40557.1|1132617_1132890_-	phage membrane protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
SQG40560.1|1132882_1133053_-	phage protein	NA	A7J285	Streptococcus_phage	92.3	9.0e-21
SQG40562.1|1133053_1134376_-	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.7	3.0e-252
SQG40564.1|1134372_1134648_-	phage protein	NA	A7J283	Streptococcus_phage	98.9	3.5e-46
SQG40565.1|1135033_1137418_-	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	94.6	8.2e-277
SQG40567.1|1137422_1139345_-	phage DNA polymerase	NA	A7J280	Streptococcus_phage	98.4	0.0e+00
SQG40569.1|1139387_1139945_-	phage protein	NA	D2J040	Enterococcus_phage	59.0	8.6e-52
SQG40571.1|1139959_1141117_-	phage protein	NA	A7J278	Streptococcus_phage	97.9	3.0e-216
SQG40573.1|1141116_1141416_-	phage protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
SQG40574.1|1141504_1141708_-	phage protein	NA	A7J276	Streptococcus_phage	98.5	1.6e-32
SQG40576.1|1142051_1142201_-	phage protein	NA	A7J275	Streptococcus_phage	90.0	3.8e-15
SQG40578.1|1142197_1142584_-	phage protein	NA	A7J274	Streptococcus_phage	87.4	1.4e-56
SQG40580.1|1142611_1142797_-	phage protein	NA	NA	NA	NA	NA
SQG40582.1|1142789_1142960_-	phage protein	NA	A7J273	Streptococcus_phage	87.5	2.9e-19
SQG40584.1|1142961_1143273_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.6	1.4e-43
SQG40586.1|1143379_1143595_+	Uncharacterised protein	NA	A0A1S5SA41	Streptococcus_phage	61.4	1.9e-15
SQG40587.1|1143568_1143817_-	Uncharacterised protein	NA	A0A141E1M0	Streptococcus_phage	69.5	1.6e-26
SQG40589.1|1143896_1144106_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG40591.1|1144247_1144508_+	Uncharacterised protein	NA	M1PS67	Streptococcus_phage	70.9	5.8e-27
SQG40593.1|1144436_1144595_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG40595.1|1144606_1145260_-	prophage LambdaSa1, antirepressor	NA	A0A2H4IZX7	uncultured_Caudovirales_phage	59.7	4.4e-71
SQG40597.1|1145271_1145463_-	phage protein	NA	A7J270	Streptococcus_phage	92.1	4.0e-25
SQG40598.1|1145769_1145919_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG40600.1|1146691_1146964_+	Cro/CI family phage transcriptional regulator	NA	Q7Y4M0	Streptococcus_phage	72.8	4.8e-32
SQG40602.1|1146967_1147348_+	peptidase	NA	A0A1S5SFH2	Streptococcus_phage	61.1	8.0e-41
SQG40603.1|1147359_1147626_+	phage protein	NA	NA	NA	NA	NA
SQG40605.1|1147754_1148897_+|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
SQG40607.1|1148986_1149262_-	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
1148985:1149004	attR	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQG40608.1|1149360_1149948_-	membrane protein	NA	NA	NA	NA	NA
SQG40610.1|1149925_1150786_-	GDSL family lipase	NA	NA	NA	NA	NA
SQG40612.1|1150760_1151600_-	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
>prophage 9
LS483394	Streptococcus pyogenes strain NCTC10880 genome assembly, chromosome: 1	1785401	1737523	1744925	1785401		Streptococcus_phage(66.67%)	11	NA	NA
SQG41796.1|1737523_1737811_-	Uncharacterised protein	NA	A0A1X9I5U4	Streptococcus_phage	64.5	5.3e-29
SQG41797.1|1738474_1740079_-	bacteriophage resistance protein	NA	A0A1P8BMF9	Lactococcus_phage	52.1	2.8e-143
SQG41798.1|1740068_1740590_-	phage protein	NA	NA	NA	NA	NA
SQG41799.1|1740602_1740869_-	phage protein	NA	A0A1X9I6M4	Streptococcus_phage	46.0	7.1e-12
SQG41800.1|1740878_1741070_-	phage protein	NA	NA	NA	NA	NA
SQG41801.1|1741072_1741294_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG41802.1|1741290_1741623_-	phage protein	NA	NA	NA	NA	NA
SQG41803.1|1741964_1742420_-	phage antirepressor protein	NA	A0A0A7S0G2	Clostridium_phage	48.4	2.9e-21
SQG41804.1|1742435_1742621_-	putative transcriptional regulator	NA	NA	NA	NA	NA
SQG41805.1|1742823_1743384_+	Cro/CI family transcriptional regulator	NA	A0A1X9I723	Streptococcus_phage	71.0	9.0e-17
SQG41806.1|1743761_1744925_+	tyrosine recombinase XerD	NA	A0A1X9I6A9	Streptococcus_phage	70.3	5.3e-160
