The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483406	Stenotrophomonas maltophilia strain NCTC10498 genome assembly, chromosome: 1	4661352	575231	582684	4661352		Escherichia_phage(28.57%)	7	NA	NA
SQG65934.1|575231_576290_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	47.6	2.8e-83
SQG65935.1|576304_577192_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	58.2	3.5e-95
SQG65936.1|577188_577746_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	50.0	3.5e-45
SQG65937.1|577742_578639_+	dTDP-4-dehydrorhamnose reductase	NA	A0A1D7XFA3	Escherichia_phage	37.1	2.2e-28
SQG65938.1|578732_580136_-	mannose-1-phosphate guanylyltransferase	NA	A0A1V0SH58	Hokovirus	29.1	1.6e-46
SQG65939.1|580147_581494_-	phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	26.6	2.2e-29
SQG65940.1|581622_582684_+	NAD-dependent epimerase/dehydratase	NA	A0A2K9KZK0	Tupanvirus	47.5	2.2e-88
>prophage 2
LS483406	Stenotrophomonas maltophilia strain NCTC10498 genome assembly, chromosome: 1	4661352	992739	1058129	4661352	integrase,plate,tail,transposase	Escherichia_phage(22.73%)	60	1033342:1033359	1064671:1064688
SQG66296.1|992739_993945_-|integrase	integrase family protein	integrase	A0A077KET4	Ralstonia_phage	37.4	1.1e-56
SQG66297.1|994561_997576_-	autotransporter	NA	NA	NA	NA	NA
SQG66298.1|997866_998271_+	Uncharacterised protein	NA	A0A1C9C5K8	Heterosigma_akashiwo_virus	36.6	7.7e-18
SQG66299.1|998349_999375_-	ADP-heptose--lipooligosaccharide heptosyltransferase II	NA	NA	NA	NA	NA
SQG66300.1|999389_1000166_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA	NA
SQG66301.1|1000165_1000933_+	beta-lactamase domain-containing protein	NA	NA	NA	NA	NA
SQG66302.1|1000929_1001319_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQG66303.1|1001794_1002112_+	quaternary ammonium compound-resistance protein sugE	NA	NA	NA	NA	NA
SQG66304.1|1002470_1011104_+	glycine-rich autotransporter protein	NA	NA	NA	NA	NA
SQG66305.1|1011052_1013362_+	glycine-rich autotransporter protein	NA	NA	NA	NA	NA
SQG66306.1|1013418_1014075_-	acetyltransferase	NA	NA	NA	NA	NA
SQG66307.1|1014201_1014612_+	Protein of uncharacterised function (DUF3592)	NA	NA	NA	NA	NA
SQG66308.1|1015191_1017243_+	DNA polymerase III subunits gamma and tau	NA	A0A1U9WR94	Streptococcus_virus	41.4	2.1e-47
SQG66309.1|1017249_1017570_+	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQG66310.1|1017681_1018281_+	Recombination protein RecR	NA	NA	NA	NA	NA
SQG66311.1|1018348_1018708_+	bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
SQG66312.1|1018785_1019313_-	Starvation lipoprotein Slp	NA	NA	NA	NA	NA
SQG66313.1|1019309_1021259_-	transmembrane transglutaminase	NA	NA	NA	NA	NA
SQG66314.1|1021251_1022196_-	transmembrane protein	NA	NA	NA	NA	NA
SQG66315.1|1022198_1023152_-	ATPase	NA	NA	NA	NA	NA
SQG66316.1|1023194_1025036_+	transmembrane protein	NA	NA	NA	NA	NA
SQG66317.1|1025209_1026154_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG66318.1|1026294_1026864_-	Maf-like protein	NA	NA	NA	NA	NA
SQG66319.1|1027016_1027487_+	characterised ACR protein	NA	NA	NA	NA	NA
SQG66320.1|1027594_1027789_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
SQG66321.1|1027880_1028858_+	3-oxoacyl-[acyl-carrier-protein] synthase,KASIII	NA	NA	NA	NA	NA
SQG66322.1|1028936_1029719_+	Mn2-dependent serine/threonine protein kinase	NA	NA	NA	NA	NA
SQG66323.1|1029975_1030920_+	malonyl CoA-ACP transacylase	NA	NA	NA	NA	NA
SQG66324.1|1031002_1031746_+	3-oxoacyl-ACP reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.3	4.7e-13
SQG66325.1|1031898_1032138_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	44.6	4.6e-10
SQG66326.1|1032281_1033544_+	3-oxoacyl-ACP synthase	NA	NA	NA	NA	NA
1033342:1033359	attL	CCGGCGGCGTGGAAGCGA	NA	NA	NA	NA
SQG66327.1|1033758_1035123_+	Para-aminobenzoate synthase, aminase component	NA	NA	NA	NA	NA
SQG66328.1|1035320_1036382_+	protein YceG like	NA	NA	NA	NA	NA
SQG66329.1|1036378_1037044_+	thymidylate kinase	NA	W8D0J5	Erwinia_phage	34.9	5.5e-21
SQG66330.1|1037040_1037997_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
SQG66331.1|1037993_1038347_+	type IV pilus assembly protein PilZ	NA	NA	NA	NA	NA
SQG66332.1|1038766_1039147_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
SQG66333.1|1039177_1040251_-	late control D family protein	NA	D5LGY1	Escherichia_phage	51.9	2.5e-95
SQG66334.1|1040241_1040457_-|tail	phage tail protein	tail	A0A193GYC8	Enterobacter_phage	54.3	1.6e-14
SQG66335.1|1040440_1040908_-|tail	phage tail protein	tail	A0A218M4I2	Erwinia_phage	35.2	1.1e-15
SQG66336.1|1040910_1043373_-|tail	bacteriophage tail protein	tail	K4ICR4	Acidithiobacillus_phage	26.7	2.7e-12
SQG66337.1|1043493_1043784_-	Uncharacterised protein	NA	A0A088FQX2	Escherichia_phage	56.4	5.5e-18
SQG66338.1|1043865_1044369_-|tail	major tail tube protein	tail	A0A193GYM4	Enterobacter_phage	54.8	5.4e-45
SQG66339.1|1044371_1045574_-|tail	bacteriophage major tail sheath protein	tail	A0A088FVH5	Escherichia_phage	54.2	6.1e-127
SQG66340.1|1045680_1046340_-	Uncharacterised protein	NA	V9IQM3	Stenotrophomonas_phage	40.5	1.5e-34
SQG66341.1|1046341_1048447_-|tail	phage tail protein	tail	V9IQX0	Stenotrophomonas_phage	36.4	3.7e-95
SQG66342.1|1048454_1049234_-|tail	bacteriophage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	51.1	7.1e-44
SQG66343.1|1049226_1050123_-|plate	phage baseplate assembly protein	plate	V5YTH6	Pseudomonas_phage	56.5	6.4e-81
SQG66344.1|1050125_1050464_-|plate	phage baseplate assembly protein	plate	A0A193GYY8	Enterobacter_phage	62.2	7.8e-32
SQG66345.1|1050516_1051107_-|plate	baseplate assembly protein	plate	A0A193GYL5	Enterobacter_phage	37.7	3.6e-24
SQG66346.1|1051103_1051658_-	phage-like protein	NA	NA	NA	NA	NA
SQG66347.1|1052010_1052388_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66348.1|1052384_1052870_-	endolysin/phage lysozyme	NA	D5LH07	Escherichia_phage	58.3	1.1e-42
SQG66349.1|1052866_1053217_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66350.1|1053213_1053663_-	Mor transcription activator family	NA	NA	NA	NA	NA
SQG66351.1|1053997_1054381_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66352.1|1054534_1055173_-	phage-like protein	NA	A0A2H4J8A1	uncultured_Caudovirales_phage	37.6	1.0e-19
SQG66353.1|1055214_1055442_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66354.1|1055399_1055792_-	regulatory protein	NA	NA	NA	NA	NA
SQG66355.1|1055792_1058129_-|integrase	phage integrase	integrase	D5LH15	Escherichia_phage	43.4	7.4e-137
1064671:1064688	attR	CCGGCGGCGTGGAAGCGA	NA	NA	NA	NA
>prophage 3
LS483406	Stenotrophomonas maltophilia strain NCTC10498 genome assembly, chromosome: 1	4661352	1654243	1665021	4661352		Ralstonia_phage(12.5%)	25	NA	NA
SQG66901.1|1654243_1655146_-	phage recombination protein Bet	NA	U6C6J0	Ralstonia_phage	69.7	6.2e-68
SQG66902.1|1655154_1656093_-	protein TolA	NA	A0A077KCC0	Edwardsiella_phage	50.9	2.5e-19
SQG66903.1|1656173_1656341_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66904.1|1656337_1656568_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66905.1|1656548_1656710_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66906.1|1656696_1656963_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66907.1|1656959_1657076_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66908.1|1657072_1657378_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66909.1|1657554_1658022_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66910.1|1657997_1658693_-	Uncharacterized HTH-type transcriptional regulator HI_1476	NA	C8CLH0	Xylella_phage	27.0	7.8e-10
SQG66911.1|1658775_1659006_+	CI repressor	NA	W6MWX8	Pseudomonas_phage	57.1	7.2e-05
SQG66912.1|1658995_1659409_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66913.1|1659392_1659587_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66914.1|1659920_1660427_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66915.1|1660445_1661180_+	Uncharacterised protein	NA	V5URT9	Shigella_phage	35.1	3.3e-11
SQG66916.1|1661176_1662448_+	DnaB domain-containing protein helicase domain-containing protein	NA	A0A2R3UA46	Siphoviridae_environmental_samples	67.1	4.2e-163
SQG66917.1|1662447_1662627_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66918.1|1662623_1662779_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66919.1|1662775_1663252_+	NinB family protein	NA	A0A1R3Y605	Salmonella_virus	36.3	2.7e-14
SQG66920.1|1663248_1663590_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66921.1|1663586_1663937_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66922.1|1663936_1664083_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66923.1|1664285_1664582_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66924.1|1664581_1664722_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG66925.1|1664718_1665021_+	Protein of uncharacterised function (DUF1364)	NA	Q8W6N7	Burkholderia_virus	43.8	5.8e-10
>prophage 4
LS483406	Stenotrophomonas maltophilia strain NCTC10498 genome assembly, chromosome: 1	4661352	3949343	4009001	4661352	protease,tail,transposase	Synechococcus_phage(18.18%)	54	NA	NA
SQG68975.1|3949343_3949637_+|transposase	ISXac3 like transposase	transposase	NA	NA	NA	NA
SQG68976.1|3949891_3950494_+|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	42.9	3.1e-31
SQG68977.1|3950719_3951625_-	6-phosphogluconate dehydrogenase	NA	A0A1D8KGX1	Synechococcus_phage	42.9	1.8e-67
SQG68978.1|3951635_3952895_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG68979.1|3952891_3953476_-	lipoprotein	NA	NA	NA	NA	NA
SQG68980.1|3953721_3955899_-|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	31.3	1.0e-79
SQG68981.1|3956178_3957189_-	lipoate synthase	NA	NA	NA	NA	NA
SQG68982.1|3957206_3957917_-	Octanoate-[acyl-carrier-protein]-protein-N- octanoyltransferase	NA	NA	NA	NA	NA
SQG68983.1|3957904_3958183_-	lipoate regulatory protein YbeD	NA	NA	NA	NA	NA
SQG68984.1|3958534_3959593_+	outer membrane protein	NA	NA	NA	NA	NA
SQG68985.1|3959941_3961156_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	39.8	1.2e-66
SQG68986.1|3961256_3962525_-	lipoprotein A	NA	F5B3X9	Synechococcus_phage	49.5	1.1e-17
SQG68987.1|3962521_3963643_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
SQG68988.1|3964656_3965751_-	Rod shape-determining protein RodA	NA	NA	NA	NA	NA
SQG68989.1|3965873_3966986_-	Rod shape-determining protein RodA	NA	NA	NA	NA	NA
SQG68990.1|3966982_3969058_-	penicillin-binding protein 2 (PBP-2)	NA	NA	NA	NA	NA
SQG68991.1|3969061_3969547_-	Rod shape-determining protein MreD	NA	NA	NA	NA	NA
SQG68992.1|3969543_3970809_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
SQG68993.1|3970930_3971977_-	Rod shape-determining protein MreB	NA	F2Y0P3	Organic_Lake_phycodnavirus	21.2	2.1e-06
SQG68994.1|3972260_3973199_+	sugar kinase	NA	NA	NA	NA	NA
SQG68995.1|3973781_3974417_-	haloacid dehalogenase	NA	NA	NA	NA	NA
SQG68996.1|3974404_3975136_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG68997.1|3975263_3977192_-	Leukotriene-A(4) hydrolase	NA	NA	NA	NA	NA
SQG68998.1|3977462_3978224_-	Ubiquinone/menaquinone biosynthesis methyltransferase UbiE	NA	NA	NA	NA	NA
SQG68999.1|3978304_3978757_+	cytosine deaminase	NA	NA	NA	NA	NA
SQG69000.1|3978955_3979216_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG69001.1|3979291_3979627_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG69002.1|3979694_3980117_+	transmembrane protein	NA	A0A1C9EHA1	Mycobacterium_phage	43.5	1.3e-07
SQG69003.1|3980200_3981586_-	multidrug resistance outer membrane protein	NA	NA	NA	NA	NA
SQG69004.1|3981693_3984816_-	RND efflux system, inner membrane transporter	NA	NA	NA	NA	NA
SQG69005.1|3984828_3986013_-	membrane fusion protein of RND family multidrug efflux pump	NA	NA	NA	NA	NA
SQG69006.1|3986237_3986897_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SQG69007.1|3986942_3987935_+	Oxidoreductase	NA	NA	NA	NA	NA
SQG69008.1|3988031_3989405_-|protease	ATP-dependent hsl protease ATP-binding subunit HslU	protease	A0A2H5BJT2	Erwinia_phage	31.1	8.7e-45
SQG69009.1|3989508_3990060_-|protease	ATP-dependent protease HslV	protease	NA	NA	NA	NA
SQG69010.1|3990145_3991042_-	Site-specific tyrosine recombinase	NA	A0A166YH27	Gordonia_phage	33.3	2.3e-14
SQG69011.1|3991055_3991730_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQG69012.1|3991726_3992578_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
SQG69013.1|3992570_3992843_-	exported lipoprotein	NA	NA	NA	NA	NA
SQG69014.1|3992925_3993351_-	transmembrane protein	NA	NA	NA	NA	NA
SQG69015.1|3993405_3995517_-	oligopeptidase B	NA	F2Y2Z7	Organic_Lake_phycodnavirus	26.7	4.8e-34
SQG69016.1|3995728_3996931_+	aspartate transaminase	NA	NA	NA	NA	NA
SQG69017.1|3997058_3999155_-	prolyl oligopeptidase	NA	NA	NA	NA	NA
SQG69018.1|3999224_3999551_-	transmembrane protein	NA	NA	NA	NA	NA
SQG69019.1|3999679_4000282_+	outer membrane lipoprotein	NA	NA	NA	NA	NA
SQG69020.1|4000352_4001042_-	methionine ABC transporter permease	NA	NA	NA	NA	NA
SQG69021.1|4001038_4002046_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.7	5.8e-30
SQG69022.1|4002247_4003144_-	transmembrane transporter protein	NA	NA	NA	NA	NA
SQG69023.1|4003296_4003779_+	nucleotide-binding protein	NA	NA	NA	NA	NA
SQG69024.1|4003850_4004447_+	Protein of uncharacterised function (DUF1415)	NA	NA	NA	NA	NA
SQG69025.1|4004443_4005247_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
SQG69026.1|4005332_4007363_-	oligopeptidase A	NA	NA	NA	NA	NA
SQG69027.1|4007533_4007938_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG69028.1|4008056_4009001_+|transposase	transposase	transposase	NA	NA	NA	NA
