The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483436	Streptococcus intermedius strain NCTC11324 genome assembly, chromosome: 1	1932951	505757	567823	1932951	bacteriocin,protease,lysis,tRNA	Streptococcus_phage(37.5%)	74	NA	NA
SQH51502.1|505757_506522_+	putative branched-chain amino acid transport protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	1.0e-15
SQH51503.1|506521_507232_+	branched-chain amino acid transport protein	NA	G9BWD6	Planktothrix_phage	28.9	2.5e-19
SQH51504.1|507378_508035_+	putative acetoin utilization protein AcuB	NA	M1NSC5	Streptococcus_phage	70.8	5.5e-82
SQH51505.1|508099_508963_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	57.5	2.7e-92
SQH51506.1|509115_509754_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	65.2	7.0e-74
SQH51507.1|509750_510644_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	56.8	8.9e-83
SQH51508.1|510666_510996_+	initiation-control protein	NA	M1PFV3	Streptococcus_phage	61.9	3.2e-30
SQH51509.1|510998_511862_+	tetrapyrrole methylase family protein	NA	M1PLC5	Streptococcus_phage	71.1	4.5e-108
SQH51510.1|511873_512383_+	methylated DNA-protein cysteine methyltransferase	NA	M1PFU9	Streptococcus_phage	63.6	9.9e-55
SQH51511.1|512400_512754_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	64.1	1.2e-35
SQH51512.1|512926_513058_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH51513.1|513137_513767_+	endonuclease III	NA	NA	NA	NA	NA
SQH51514.1|513794_514181_-	glyoxalase	NA	NA	NA	NA	NA
SQH51515.1|514192_515020_-	exodeoxyribonuclease	NA	M1PSC0	Streptococcus_phage	80.6	4.6e-126
SQH51516.1|515135_515369_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH51517.1|515829_516042_+|lysis	hemolysis inducing protein	lysis	NA	NA	NA	NA
SQH51518.1|516234_516690_+	Protein of uncharacterised function (DUF3290)	NA	NA	NA	NA	NA
SQH51519.1|516686_517319_+	putative membrane protein yetF	NA	NA	NA	NA	NA
SQH51520.1|517681_517942_-	integral membrane protein	NA	NA	NA	NA	NA
SQH51521.1|518188_520186_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SEZ7	Hokovirus	31.2	4.1e-88
SQH51522.1|520275_521457_-	lipase	NA	NA	NA	NA	NA
SQH51523.1|521548_522235_+	putative response regulator	NA	NA	NA	NA	NA
SQH51524.1|522218_523199_+	putative signal transduction histidine kinase	NA	B5LWN0	Feldmannia_species_virus	25.5	5.1e-07
SQH51525.1|523321_524080_+	TraX family protein	NA	NA	NA	NA	NA
SQH51526.1|524297_525077_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.8	1.0e-26
SQH51527.1|525057_527037_+	putative permease protein	NA	NA	NA	NA	NA
SQH51528.1|527185_528052_+	ABC transporter protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	32.7	2.8e-25
SQH51529.1|528053_528917_+	putative ABC transporter protein	NA	NA	NA	NA	NA
SQH51530.1|528943_529399_+	LytTr family transcriptional regulator	NA	NA	NA	NA	NA
SQH51531.1|529411_529801_+	membrane protein	NA	NA	NA	NA	NA
SQH51532.1|529874_530840_-	signal peptide	NA	NA	NA	NA	NA
SQH51533.1|531270_531366_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH51534.1|531346_531475_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH51535.1|531614_532382_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.8	1.0e-26
SQH51536.1|532374_534363_+	putative ABC transporter permease	NA	NA	NA	NA	NA
SQH51537.1|534534_535923_+	cationic amino acid transporter	NA	NA	NA	NA	NA
SQH51538.1|535991_536420_+	acetyltransferase	NA	NA	NA	NA	NA
SQH51539.1|536423_536894_+	acetyltransferase	NA	NA	NA	NA	NA
SQH51540.1|536890_537529_+	ribose/galactose Isomerase	NA	NA	NA	NA	NA
SQH51541.1|538072_538309_+|tRNA	methionine--tRNA ligase	tRNA	NA	NA	NA	NA
SQH51542.1|538301_539000_+	oxidoreductase, short chain dehydrogenase/reductase family protein	NA	NA	NA	NA	NA
SQH51543.1|538996_539758_+	acetyltransferase	NA	NA	NA	NA	NA
SQH51544.1|539754_540087_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH51545.1|540096_540255_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH51546.1|540293_540743_+	acetyltransferase	NA	NA	NA	NA	NA
SQH51547.1|540827_542207_+	putative glucosamine-1-phosphate acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase	NA	A0A2K9L4K9	Tupanvirus	36.0	1.2e-30
SQH51548.1|542215_542767_+	NUDIX family hydrolase	NA	NA	NA	NA	NA
SQH51549.1|542776_543085_+	membrane protein	NA	NA	NA	NA	NA
SQH51550.1|543138_543831_+	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
SQH51551.1|543848_544157_+	membrane protein	NA	S5MNN8	Brevibacillus_phage	64.0	2.8e-12
SQH51552.1|544268_545810_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	28.8	8.8e-54
SQH51553.1|545864_546101_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH51554.1|546136_546940_-	putative peptidyl-prolyl cis-trans isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	35.8	1.9e-12
SQH51555.1|547460_547670_+	putative stress-responsive transcriptional regulator PspC	NA	NA	NA	NA	NA
SQH51556.1|547759_550057_+	putative cell division protein	NA	S5VNE3	Mycobacterium_phage	50.9	8.4e-85
SQH51557.1|550403_552773_+	cation transport ATPase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	24.4	1.3e-35
SQH51558.1|552792_553146_-	membrane protein	NA	NA	NA	NA	NA
SQH51559.1|553307_553733_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQH51560.1|553822_554512_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQH51561.1|554796_555537_+	uridylate kinase	NA	NA	NA	NA	NA
SQH51562.1|555540_556098_+	ribosome-recycling factor	NA	NA	NA	NA	NA
SQH51563.1|556210_557065_+	s1 RNA binding domain protein	NA	NA	NA	NA	NA
SQH51564.1|557124_558162_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SQH51565.1|558232_558838_+	manganese-dependent superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	56.2	1.3e-61
SQH51566.1|558910_559285_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH51567.1|559481_559733_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH51568.1|559765_561916_+|bacteriocin	putative ABC-type bacteriocin transporter	bacteriocin	W8CYL7	Bacillus_phage	27.3	7.2e-38
SQH51569.1|561926_563288_+|bacteriocin	putative bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
SQH51570.1|563616_564933_-	putative histidine kinase	NA	NA	NA	NA	NA
SQH51571.1|564934_565687_-	putative response regulator	NA	NA	NA	NA	NA
SQH51572.1|565849_566563_-|protease	CAAX amino terminal membrane protease family protein	protease	NA	NA	NA	NA
SQH51573.1|566794_567022_+|bacteriocin	bacteriocin class II with double-glycine leader peptide	bacteriocin	NA	NA	NA	NA
SQH51574.1|567057_567378_+	role in replication	NA	NA	NA	NA	NA
SQH51575.1|567607_567823_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 2
LS483436	Streptococcus intermedius strain NCTC11324 genome assembly, chromosome: 1	1932951	1674653	1742359	1932951	protease,integrase,transposase,bacteriocin,tRNA	Cronobacter_phage(18.18%)	56	1714050:1714064	1750203:1750217
SQH52609.1|1674653_1675292_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQH52610.1|1675545_1677405_-|tRNA	prolyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQH52611.1|1677438_1678710_-|protease	putative membrane-associated zinc metalloprotease	protease	NA	NA	NA	NA
SQH52612.1|1678861_1679665_-	putative phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SQH52613.1|1679673_1680423_-	undecaprenyl pyrophosphate synthetase	NA	R9W0U9	Flavobacterium_phage	43.9	2.3e-23
SQH52614.1|1680890_1681229_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
SQH52615.1|1681907_1683884_-	putative transketolase	NA	NA	NA	NA	NA
SQH52616.1|1684024_1685116_-	putative L-ascorbate 6-phosphate lactonase	NA	NA	NA	NA	NA
SQH52617.1|1685277_1686948_-	phosphotransferase	NA	NA	NA	NA	NA
SQH52618.1|1687160_1687868_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA	NA
SQH52619.1|1687870_1688734_-	L-xylulose 5-phosphate 3-epimerase	NA	NA	NA	NA	NA
SQH52620.1|1688739_1689405_-	putative 3-keto-L-gulonate-6-phosphate decarboxylase	NA	NA	NA	NA	NA
SQH52621.1|1689450_1689936_-	putative phosphotransferase system sugar-specific EII component	NA	NA	NA	NA	NA
SQH52622.1|1690137_1690419_-	putative phosphotransferase system sugar-specific EII component	NA	NA	NA	NA	NA
SQH52623.1|1690449_1691910_-	putative sugar-specific permease, SgaT/UlaA	NA	NA	NA	NA	NA
SQH52624.1|1692076_1694206_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpL	protease	K4FB40	Cronobacter_phage	41.2	7.5e-120
SQH52625.1|1694624_1696439_-	D-fructose-6-phosphate amidotransferase	NA	Q84421	Paramecium_bursaria_Chlorella_virus	37.3	4.0e-98
SQH52626.1|1696820_1698020_-	acetate kinase	NA	NA	NA	NA	NA
SQH52627.1|1698066_1699020_-	adenine-specific DNA methylase	NA	NA	NA	NA	NA
SQH52628.1|1699110_1699407_-	late competence protein ComGG	NA	NA	NA	NA	NA
SQH52629.1|1699417_1699855_-	competence protein	NA	NA	NA	NA	NA
SQH52630.1|1699838_1700132_-	type II secretory pathway, pseudopilin PulG	NA	NA	NA	NA	NA
SQH52631.1|1700103_1700532_-	competence protein	NA	NA	NA	NA	NA
SQH52632.1|1700491_1700809_-	putative competence protein ComYC	NA	NA	NA	NA	NA
SQH52633.1|1700805_1701807_-	competence protein comYB	NA	NA	NA	NA	NA
SQH52634.1|1701769_1702711_-	putative competence protein ComYA	NA	NA	NA	NA	NA
SQH52635.1|1702779_1703145_-	putative DNA binding protein	NA	NA	NA	NA	NA
SQH52636.1|1703366_1704713_-	glutamate-ammonia ligase	NA	NA	NA	NA	NA
SQH52637.1|1704751_1705111_-	putative transcriptional regulator	NA	NA	NA	NA	NA
SQH52638.1|1705187_1705718_-	Predicted membrane protein	NA	NA	NA	NA	NA
SQH52639.1|1705892_1706573_-	cell wall degradation protein	NA	NA	NA	NA	NA
SQH52640.1|1706980_1710913_-	putative cell-surface antigen I/II	NA	NA	NA	NA	NA
SQH52641.1|1711274_1712471_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
SQH52642.1|1712602_1716241_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	25.1	8.7e-68
1714050:1714064	attL	TCCATCATCATAACA	NA	NA	NA	NA
SQH52643.1|1716279_1719846_-	DNA-directed RNA polymerase subunit beta	NA	A0A2P0VMZ3	Tetraselmis_virus	25.7	6.1e-42
SQH52644.1|1720252_1720870_-	ABC superfamily ATP binding cassette transporter	NA	A0A2H4UU96	Bodo_saltans_virus	31.6	1.3e-16
SQH52645.1|1720871_1722845_-|bacteriocin	bacteriocin-associated membrane protein	bacteriocin	NA	NA	NA	NA
SQH52646.1|1722952_1723234_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH52647.1|1723521_1725861_-	putative penicillin binding protein IIB	NA	NA	NA	NA	NA
SQH52648.1|1726042_1727299_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	40.1	1.2e-77
SQH52649.1|1727542_1728379_+	ribosomal RNA large subunit methyltransferase A	NA	NA	NA	NA	NA
SQH52650.1|1728436_1729117_-	edopeptidase	NA	NA	NA	NA	NA
SQH52651.1|1729109_1729637_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
SQH52652.1|1729682_1730813_-	putative N-acetyldiaminopimelate deacetylase	NA	NA	NA	NA	NA
SQH52653.1|1730825_1731524_-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	NA	NA	NA	NA	NA
SQH52654.1|1731641_1733099_-|tRNA	nondiscriminating glutamyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQH52655.1|1733307_1734723_-	DNA repair protein	NA	NA	NA	NA	NA
SQH52656.1|1734680_1735151_-	Amidases related to nicotinamidase	NA	NA	NA	NA	NA
SQH52657.1|1735160_1735604_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q332E8	Clostridium_botulinum_C_phage	47.3	4.8e-29
SQH52658.1|1735697_1736732_-	putative MccC family protein	NA	NA	NA	NA	NA
SQH52659.1|1737795_1738812_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQH52660.1|1738837_1739734_+	glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	51.0	2.8e-76
SQH52661.1|1739830_1740073_-|transposase	truncated transposase	transposase	A0A1S5SBP9	Streptococcus_phage	56.2	6.9e-14
SQH52662.1|1741029_1741437_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQH52663.1|1741485_1741785_-	transcriptional regulator protein	NA	NA	NA	NA	NA
SQH52664.1|1742065_1742359_+|integrase	putative integrase	integrase	Q6J1W6	Lactobacillus_phage	37.2	1.1e-05
1750203:1750217	attR	TCCATCATCATAACA	NA	NA	NA	NA
>prophage 3
LS483436	Streptococcus intermedius strain NCTC11324 genome assembly, chromosome: 1	1932951	1788915	1798552	1932951		Streptococcus_phage(50.0%)	10	NA	NA
SQH52716.1|1788915_1790724_-	extracellular polysaccharide biosynthesis	NA	A0A1V0SAI8	Catovirus	30.0	1.5e-23
SQH52717.1|1790748_1791441_-	capsular exopolysaccharide family protein	NA	A0A1X9I5D6	Streptococcus_phage	67.0	9.6e-77
SQH52718.1|1791451_1792147_-	putative capsular polysaccharide biosynthesis protein	NA	A0A1X9I5E1	Streptococcus_phage	56.5	5.1e-62
SQH52719.1|1792155_1792893_-	protein-tyrosine phosphatase	NA	NA	NA	NA	NA
SQH52720.1|1792889_1794335_-	Transcriptional regulator	NA	A0A1X9I5X1	Streptococcus_phage	57.8	3.3e-135
SQH52721.1|1794509_1795115_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	58.3	4.1e-55
SQH52722.1|1795119_1795626_-	acetyltransferase	NA	NA	NA	NA	NA
SQH52723.1|1795629_1796133_-	putative acetyltransferase	NA	NA	NA	NA	NA
SQH52724.1|1796189_1796333_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH52725.1|1796341_1798552_-	anaerobic ribonucleoside triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	65.8	2.3e-281
>prophage 4
LS483436	Streptococcus intermedius strain NCTC11324 genome assembly, chromosome: 1	1932951	1816731	1825284	1932951		Streptococcus_phage(25.0%)	10	NA	NA
SQH52744.1|1816731_1817241_+	XRE family transcriptional regulator	NA	A0A139ZPI6	Marinitoga_camini_virus	45.5	1.6e-07
SQH52745.1|1817194_1817734_+	RDD family protein	NA	NA	NA	NA	NA
SQH52746.1|1817879_1819826_-	DNA mismatch repair protein	NA	A0A1B2LRQ5	Wolbachia_phage	30.9	1.4e-64
SQH52747.1|1819921_1821067_-	DNA recombination protein	NA	A0A1X9I5Y5	Streptococcus_phage	46.4	2.9e-86
SQH52748.1|1821381_1822437_-	Abi family protein	NA	NA	NA	NA	NA
SQH52749.1|1822439_1822859_-	Uncharacterised protein	NA	M1PKK7	Streptococcus_phage	28.3	1.3e-07
SQH52750.1|1822962_1823631_-	filamentation induced by cAMP protein fic	NA	D7RWK9	Brochothrix_phage	26.7	2.8e-09
SQH52751.1|1824066_1824249_+	prophage Lp2 protein 33	NA	Q4ZA73	Staphylococcus_virus	72.9	1.0e-17
SQH52752.1|1824259_1824853_-	MTH538 TIR-like domain (DUF1863)	NA	A0A0S2MYG4	Enterococcus_phage	62.2	1.8e-63
SQH52753.1|1824849_1825284_-	membrane protein	NA	A0A2H4JD89	uncultured_Caudovirales_phage	42.0	3.5e-24
>prophage 5
LS483436	Streptococcus intermedius strain NCTC11324 genome assembly, chromosome: 1	1932951	1829185	1837180	1932951		Streptococcus_phage(83.33%)	8	NA	NA
SQH52764.1|1829185_1829467_+	phage protein	NA	A0A1X9I5U9	Streptococcus_phage	64.4	1.2e-25
SQH52765.1|1829469_1829823_+	phage protein	NA	M1PFA2	Streptococcus_phage	65.6	1.3e-37
SQH52766.1|1829854_1830670_+	replication protein	NA	A0A2I6QQV2	Streptococcus_phage	63.4	1.1e-68
SQH52767.1|1830685_1831510_+	putative phage replication protein	NA	A0A1X9I6C4	Streptococcus_phage	36.6	5.7e-44
SQH52768.1|1832240_1832666_+	phage protein	NA	A0A1S5S8W3	Streptococcus_phage	27.3	2.0e-08
SQH52769.1|1833585_1834026_+	LytTr DNA-binding domain-containing protein	NA	NA	NA	NA	NA
SQH52770.1|1834022_1834481_+	integral membrane protein	NA	NA	NA	NA	NA
SQH52771.1|1834621_1837180_-	DNA mismatch repair protein	NA	A0A1V0SDQ0	Indivirus	23.8	7.3e-37
