The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483438	Haemophilus influenzae strain NCTC12975 genome assembly, chromosome: 1	1850791	705619	712062	1850791	transposase,tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
SQH53532.1|705619_706345_-	putative methyltransferase	NA	A0A0N9SHZ9	Staphylococcus_phage	32.0	1.1e-25
SQH53533.1|706397_706916_-	Putative protein-S-isoprenylcysteine methyltransferase	NA	NA	NA	NA	NA
SQH53534.1|707135_708902_+|tRNA	aspartyl-tRNA synthetase	tRNA	A0A1V0SFI4	Hokovirus	30.3	3.2e-07
SQH53535.1|708963_709836_+	Uncharacterised protein	NA	A0A2D1GNG5	Pseudomonas_phage	26.5	3.4e-10
SQH53536.1|710396_710780_+	transcriptional regulatory protein	NA	A0A0M3LP76	Mannheimia_phage	69.5	5.7e-47
SQH53537.1|710902_711610_-|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	61.2	6.8e-62
SQH53538.1|711708_712062_-|transposase	transposase	transposase	A0A1B1P776	Bacillus_phage	37.2	3.7e-08
>prophage 2
LS483438	Haemophilus influenzae strain NCTC12975 genome assembly, chromosome: 1	1850791	1231511	1288472	1850791	tRNA,portal,lysis,protease,tail,integrase,capsid,plate,terminase,head,holin	Mannheimia_phage(48.48%)	75	1222110:1222126	1291967:1291983
1222110:1222126	attL	AATCTACCGCACTTTTT	NA	NA	NA	NA
SQH53978.1|1231511_1232903_-|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	31.2	7.2e-23
SQH53979.1|1233096_1233987_+	acetyl-CoA carboxylase, beta (carboxyltranferase) subunit	NA	NA	NA	NA	NA
SQH53980.1|1233988_1235293_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQH53981.1|1235580_1236249_-	SanA	NA	NA	NA	NA	NA
SQH53982.1|1236418_1237495_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
SQH53983.1|1237549_1240192_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	32.3	2.1e-103
SQH53984.1|1240357_1242121_-	YcaO-like family	NA	NA	NA	NA	NA
SQH53985.1|1242257_1242734_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH53986.1|1242969_1243776_+	type 11 methyltransferase	NA	NA	NA	NA	NA
SQH53987.1|1243827_1244529_+	hydroxyacylglutathione hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	29.1	3.3e-08
SQH53988.1|1244572_1245433_-	tellurite resistance protein	NA	NA	NA	NA	NA
SQH53989.1|1245545_1247594_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A2K9V939	Bandra_megavirus	29.3	2.2e-60
SQH53990.1|1247744_1248857_+	antiporter inner membrane protein	NA	NA	NA	NA	NA
SQH53991.1|1248903_1249566_-	dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive	NA	NA	NA	NA	NA
SQH53992.1|1249679_1250354_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
SQH53993.1|1251062_1252073_-|portal	portal vertex protein	portal	Q19UT6	Mannheimia_phage	60.4	1.8e-116
SQH53994.1|1252082_1253864_-	Terminase, ATPase subunit	NA	A0A0M3LRV4	Mannheimia_phage	65.4	5.0e-218
SQH53995.1|1254028_1254844_+|capsid	Probable bacteriophage capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	60.5	6.9e-66
SQH53996.1|1254864_1255914_+|capsid	major capsid protein	capsid	Q19UT3	Mannheimia_phage	51.3	1.7e-88
SQH53997.1|1255925_1256576_+|terminase	terminase, endonuclease subunit	terminase	Q19US0	Mannheimia_phage	46.0	4.1e-45
SQH53998.1|1256869_1257376_+|head	putative phage head completion	head	A0A0M3LNL8	Mannheimia_phage	51.0	2.8e-33
SQH53999.1|1257375_1257585_+|tail	Probable bacteriophage tail protein X	tail	NA	NA	NA	NA
SQH54000.1|1257586_1257808_+|holin	holin	holin	NA	NA	NA	NA
SQH54001.1|1257800_1258319_+	phage-like lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.6	9.5e-37
SQH54002.1|1258303_1258654_+|lysis	phage lysis regulatory protein, LysB family	lysis	NA	NA	NA	NA
SQH54003.1|1258828_1259044_+	DnaK suppressor protein	NA	A0A0M3LS11	Mannheimia_phage	47.9	1.1e-10
SQH54004.1|1259040_1259304_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54005.1|1259269_1259740_+|tail	Probable bacteriophage tail completion protein	tail	E5G6N3	Salmonella_phage	45.3	7.3e-28
SQH54006.1|1259739_1260201_+|tail	bacteriophage tail completion protein gpS-like protein	tail	A0A2H4J927	uncultured_Caudovirales_phage	48.2	5.7e-25
SQH54007.1|1260201_1260549_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54008.1|1260621_1260720_+|tail	phage-related tail protein	tail	NA	NA	NA	NA
SQH54009.1|1260845_1261157_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54010.1|1261259_1261433_+|tail	Probable bacteriophage tail completion protein	tail	Q19UR2	Mannheimia_phage	53.3	3.2e-05
SQH54011.1|1261410_1261671_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54012.1|1261739_1262507_+|tail	phage-related tail protein	tail	E5G6Q1	Salmonella_phage	44.8	9.9e-06
SQH54013.1|1262549_1264547_+|tail	phage-like tail protein	tail	V5YUN9	Pseudomonas_phage	33.7	3.8e-65
SQH54014.1|1264623_1264791_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54015.1|1264768_1264981_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54016.1|1265045_1265219_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54017.1|1265316_1265874_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54018.1|1265882_1266311_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54019.1|1266420_1267014_+|plate	phage P2-like baseplate assembly protein	plate	A0A0M3LPY9	Mannheimia_phage	66.5	1.6e-43
SQH54020.1|1267015_1267354_+|plate	baseplate assembly protein W	plate	Q19UQ6	Mannheimia_phage	56.6	3.4e-19
SQH54021.1|1267350_1268265_+|plate	phage-like baseplate assembly protein	plate	Q19UQ5	Mannheimia_phage	59.5	5.1e-94
SQH54022.1|1268251_1268791_+|tail	Probable bacteriophage tail protein gpI	tail	M1T2R2	Escherichia_phage	52.5	1.6e-50
SQH54023.1|1268799_1271322_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	68.7	1.8e-253
SQH54024.1|1271333_1271933_+	Uncharacterised protein	NA	Q94MX9	Haemophilus_virus	89.5	7.8e-91
SQH54025.1|1271929_1272049_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54026.1|1272191_1273376_+|tail	phage tail sheath-like protein	tail	A0A1S6KZY7	Salmonella_phage	48.2	2.3e-102
SQH54027.1|1273379_1273886_+|tail	phage-related tail protein	tail	Q19UP8	Mannheimia_phage	59.5	5.4e-53
SQH54028.1|1273951_1274251_+|tail	Probable bacteriophage tail protein E	tail	E5E3Q1	Burkholderia_phage	42.9	1.2e-12
SQH54029.1|1274250_1274397_+|tail	Probable bacteriophage tail protein E+E'	tail	E5E3Q0	Burkholderia_phage	65.0	2.2e-07
SQH54030.1|1274725_1275163_+|tail	phage-related tail protein	tail	A0A0M3LQ18	Mannheimia_phage	57.3	9.1e-41
SQH54031.1|1275162_1276383_+	regulator of late gene expression	NA	R9QBT3	Mannheimia_phage	57.5	2.7e-122
SQH54032.1|1276400_1276790_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54033.1|1276849_1278610_-	Uncharacterized protein conserved in bacteria (DUF2326)	NA	NA	NA	NA	NA
SQH54034.1|1278612_1278858_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54035.1|1278854_1279616_-	Predicted restriction endonuclease	NA	NA	NA	NA	NA
SQH54036.1|1279620_1280304_-	peptidase S24-like protein	NA	Q76H56	Enterobacteria_phage	33.3	7.9e-23
SQH54037.1|1280441_1280861_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54038.1|1280923_1281166_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54039.1|1281203_1281497_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54040.1|1281577_1281733_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54041.1|1281949_1282306_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54042.1|1282166_1282445_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54043.1|1282458_1282587_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54044.1|1282877_1283141_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54045.1|1283158_1283539_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54046.1|1283542_1283785_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54047.1|1283781_1283895_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54048.1|1283912_1284221_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54049.1|1284230_1286417_+	Probable bacteriophage replication protein A	NA	Q94N00	Haemophilus_virus	42.7	5.4e-166
SQH54050.1|1286471_1286993_+	Uncharacterised protein	NA	A0A0M3LTD8	Mannheimia_phage	42.4	4.3e-29
SQH54051.1|1286992_1287160_+	DNA binding domain, excisionase family	NA	NA	NA	NA	NA
SQH54052.1|1287140_1288472_-|integrase	phage integrase family protein	integrase	A0A1B5FPC6	Escherichia_phage	33.0	9.3e-44
1291967:1291983	attR	AAAAAGTGCGGTAGATT	NA	NA	NA	NA
>prophage 3
LS483438	Haemophilus influenzae strain NCTC12975 genome assembly, chromosome: 1	1850791	1373453	1385486	1850791	tRNA	Acinetobacter_phage(42.86%)	11	NA	NA
SQH54114.1|1373453_1374473_-	phosphate transporter subunit	NA	A0A222YW41	Synechococcus_phage	40.5	1.2e-51
SQH54115.1|1374975_1375464_+	ferritin iron storage protein	NA	NA	NA	NA	NA
SQH54116.1|1375479_1375977_+	ferritin like protein 2	NA	NA	NA	NA	NA
SQH54117.1|1376118_1376970_+	glycosyltransferase	NA	A7IW34	Paramecium_bursaria_Chlorella_virus	29.7	2.8e-17
SQH54118.1|1377075_1378632_+	component I of anthranilate synthase	NA	A0A0B5J984	Pandoravirus	32.8	3.1e-22
SQH54119.1|1378644_1379226_+	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	39.4	4.5e-35
SQH54120.1|1379274_1379661_+	anthranilate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQH54121.1|1379713_1380715_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	35.3	8.8e-47
SQH54122.1|1380752_1382186_+	fused indole-3-glycerolphosphate synthetase/N-(5-phosphoribosyl)anthranilate isomerase	NA	A0A0P0IR83	Acinetobacter_phage	38.0	1.2e-33
SQH54123.1|1382315_1382588_+	hydrogenase 2 accessory protein	NA	NA	NA	NA	NA
SQH54124.1|1382621_1385486_-|tRNA	valyl-tRNA synthetase	tRNA	A0A1V0SK04	Klosneuvirus	37.4	1.0e-148
>prophage 4
LS483438	Haemophilus influenzae strain NCTC12975 genome assembly, chromosome: 1	1850791	1394862	1426620	1850791	integrase,terminase	Haemophilus_phage(18.75%)	48	1416937:1416953	1432730:1432746
SQH54137.1|1394862_1395039_-	Uncharacterized protein conserved in bacteria	NA	Q7Y5U2	Haemophilus_phage	93.1	8.5e-22
SQH54138.1|1395179_1396361_-	phage Mu protein gp30-like protein	NA	Q7Y5U5	Haemophilus_phage	76.7	6.4e-89
SQH54139.1|1396389_1397724_-	phage-associated protein, HI1409 family	NA	Q7Y5U6	Haemophilus_phage	84.2	2.1e-213
SQH54140.1|1397968_1399069_-|terminase	phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	53.1	4.6e-97
SQH54141.1|1399055_1399568_-|terminase	Probable bacteriophage terminase, small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	39.2	1.0e-19
SQH54142.1|1399645_1399897_+	bacteriophage protein/plasmid stabilization system protein	NA	A0A1S5NR91	Burkholderia_phage	52.9	9.9e-16
SQH54143.1|1399880_1400228_+	transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	56.1	1.2e-22
SQH54144.1|1400422_1400758_-	putative bacteriophage protein	NA	Q7Y5U9	Haemophilus_phage	52.1	9.8e-19
SQH54145.1|1400730_1401273_-	DLP12 prophage lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	52.0	3.1e-46
SQH54146.1|1401253_1401505_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54147.1|1401675_1401837_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54148.1|1401964_1402477_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54149.1|1402885_1403707_-	NYN domain	NA	A0A0R6PGY5	Moraxella_phage	40.9	3.1e-34
SQH54150.1|1403908_1404394_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54151.1|1404466_1404832_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
SQH54152.1|1404833_1405421_-	ning recombination protein	NA	A0A2I7RAC0	Vibrio_phage	48.0	8.3e-37
SQH54153.1|1405513_1405930_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	86.1	1.9e-64
SQH54154.1|1405966_1406191_-	Uncharacterised protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
SQH54155.1|1406187_1406829_-	phage replication protein	NA	D0UIL4	Aggregatibacter_phage	41.9	4.2e-34
SQH54156.1|1406825_1407602_-	putative phage DNA replication protein O	NA	D0UIL5	Aggregatibacter_phage	62.6	1.3e-26
SQH54157.1|1407603_1407846_-	Uncharacterised protein	NA	M4NJW2	Sulfitobacter_phage	41.4	4.0e-06
SQH54158.1|1408002_1408434_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54159.1|1408446_1408674_-	DNA-binding transcriptional regulator	NA	D0UIL8	Aggregatibacter_phage	50.8	1.5e-10
SQH54160.1|1408808_1409714_+	bacteriophage transcriptional regulator	NA	B6SCU0	Bacteriophage	40.8	6.8e-38
SQH54161.1|1409729_1410824_+	Protein of uncharacterised function DUF262	NA	A0A0R6PKN1	Moraxella_phage	36.2	2.0e-60
SQH54162.1|1410823_1411483_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54163.1|1411439_1412471_-	modification methylase haeiii	NA	A0A0R6PG08	Moraxella_phage	66.4	2.8e-128
SQH54164.1|1413146_1413317_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54165.1|1413481_1414312_+	KilA-N domain	NA	Q4ZC41	Staphylococcus_virus	52.2	3.4e-76
SQH54166.1|1414816_1415434_+	putative prophage antirepressor	NA	A0A0P0ZCS0	Stx2-converting_phage	46.4	4.0e-18
SQH54167.1|1415523_1415874_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54168.1|1415870_1416164_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54169.1|1416175_1417087_+	recombinational DNA repair protein, rece pathway	NA	A0A0M3LNU3	Mannheimia_phage	70.7	2.4e-115
1416937:1416953	attL	GGTTGTTGATGAAGCCA	NA	NA	NA	NA
SQH54170.1|1417431_1418043_+	putative prophage antirepressor	NA	Q7Y5X0	Haemophilus_phage	60.6	5.8e-33
SQH54171.1|1418253_1418898_+	Uncharacterised protein	NA	A0A0M3LP90	Mannheimia_phage	71.4	6.8e-85
SQH54172.1|1418897_1419332_+	ssDNA-binding protein	NA	A0A059WRL7	Vibrio_phage	36.2	1.3e-18
SQH54173.1|1419394_1420687_+	large adhesin	NA	A0A0U3TGV3	Pseudomonas_phage	61.9	8.8e-07
SQH54174.1|1420811_1421708_+	recombination associated protein	NA	S4TWL4	Salmonella_phage	43.7	8.4e-57
SQH54175.1|1421704_1421950_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54176.1|1421946_1422306_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54177.1|1422409_1423093_+	C5 methylase	NA	K4JU61	Streptococcus_phage	57.1	5.2e-67
SQH54178.1|1423103_1423751_+	Uncharacterised protein	NA	A0A0M3LNU4	Mannheimia_phage	40.0	1.0e-08
SQH54179.1|1423754_1424171_+	Uncharacterised protein	NA	W0B4E9	Acinetobacter_phage	39.2	3.5e-05
SQH54180.1|1424250_1424739_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54181.1|1424728_1425052_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54182.1|1425044_1425317_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54183.1|1425358_1425562_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH54184.1|1425633_1426620_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	55.6	1.3e-95
1432730:1432746	attR	TGGCTTCATCAACAACC	NA	NA	NA	NA
>prophage 6
LS483438	Haemophilus influenzae strain NCTC12975 genome assembly, chromosome: 1	1850791	1664198	1672707	1850791		uncultured_Caudovirales_phage(16.67%)	8	NA	NA
SQH54417.1|1664198_1664882_+	7-cyano-7-deazaguanine synthase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	2.3e-54
SQH54418.1|1664874_1665300_+	6-pyruvoyl-tetrahydropterin synthase	NA	A0A1U9WRB3	Streptococcus_virus	42.0	2.3e-20
SQH54419.1|1665306_1665936_+	organic radical activating protein	NA	S4TZT1	uncultured_phage	30.3	8.6e-16
SQH54420.1|1666542_1668726_+	DNA-dependent ATPase I and helicase II	NA	A7KV33	Bacillus_phage	37.7	3.9e-116
SQH54421.1|1668815_1669817_+	dipeptide transporter	NA	NA	NA	NA	NA
SQH54422.1|1669831_1670719_+	dipeptide transporter	NA	NA	NA	NA	NA
SQH54423.1|1670728_1671721_+	dipeptide transporter	NA	G3M9Y6	Bacillus_virus	30.8	2.0e-14
SQH54424.1|1671723_1672707_+	dipeptide transporter	NA	G9BWD6	Planktothrix_phage	33.2	1.4e-20
>prophage 7
LS483438	Haemophilus influenzae strain NCTC12975 genome assembly, chromosome: 1	1850791	1799581	1808644	1850791		Escherichia_phage(85.71%)	10	NA	NA
SQH54545.1|1799581_1801426_+	abc transporter atp-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.3	2.4e-21
SQH54546.1|1801549_1801828_-	copper chaperone MerP-like protein	NA	NA	NA	NA	NA
SQH54547.1|1801836_1802199_-	putative mercuric transport protein MerT	NA	NA	NA	NA	NA
SQH54548.1|1802173_1803283_-	transglutaminase domain-containing protein	NA	NA	NA	NA	NA
SQH54549.1|1803535_1805953_+	dimethyl sulfoxide reductase, anaerobic subunit A	NA	A0A077SK27	Escherichia_phage	50.8	1.8e-223
SQH54550.1|1805963_1806332_+	oxidoreductase, Fe-S subunit	NA	A0A077SL61	Escherichia_phage	58.3	1.8e-42
SQH54551.1|1806328_1806580_+	oxidoreductase, Fe-S subunit	NA	A0A077SL61	Escherichia_phage	57.8	1.1e-22
SQH54552.1|1806581_1807421_+	anaerobic dimethyl sulfoxide reductase chain C	NA	A0A077SK59	Escherichia_phage	31.6	5.5e-18
SQH54553.1|1807532_1808144_+	twin-argninine leader-binding protein for DmsA and TorA	NA	A0A077SLS7	Escherichia_phage	32.5	3.0e-21
SQH54554.1|1808143_1808644_+	ferredoxin	NA	A0A077SLP0	Escherichia_phage	32.0	3.2e-13
