The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483441	Aeromonas caviae strain NCTC12244 genome assembly, chromosome: 1	4586140	352809	366815	4586140	integrase,transposase	Shigella_phage(28.57%)	9	353068:353082	364509:364523
SQH57924.1|352809_356424_+	exodeoxyribonuclease V, beta subunit	NA	A7KV33	Bacillus_phage	21.7	2.4e-09
353068:353082	attL	ATCCGCGCCCGCATC	NA	NA	NA	NA
SQH57925.1|356432_358505_+	exodeoxyribonuclease V subunit alpha	NA	A0A1P8DII4	Virus_Rctr197k	27.7	1.0e-28
SQH57926.1|358589_359630_+|integrase	integrase catalytic subunit	integrase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	41.8	1.7e-72
SQH57927.1|359794_360508_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH57928.1|360608_360902_+|transposase	IS3 family transposase	transposase	U5P4I9	Shigella_phage	55.0	6.2e-17
SQH57929.1|361030_361759_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	65.3	2.3e-89
SQH57930.1|362168_362738_-	single-strand binding protein	NA	R9TR60	Vibrio_phage	60.1	6.5e-55
SQH57931.1|363255_363894_+	csgAB operon transcriptional regulatory protein	NA	NA	NA	NA	NA
SQH57932.1|363986_366815_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	56.3	0.0e+00
364509:364523	attR	ATCCGCGCCCGCATC	NA	NA	NA	NA
>prophage 2
LS483441	Aeromonas caviae strain NCTC12244 genome assembly, chromosome: 1	4586140	705571	715540	4586140		uncultured_Mediterranean_phage(25.0%)	10	NA	NA
SQH58256.1|705571_706333_+	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.6	6.2e-69
SQH58257.1|706337_706955_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	45.4	5.3e-34
SQH58258.1|706951_707533_+	DedA family membrane protein	NA	NA	NA	NA	NA
SQH58259.1|707542_708613_+	lipoprotein NlpD	NA	I2E8W3	Clostridium_phage	34.9	1.7e-11
SQH58260.1|708659_709643_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	33.7	3.8e-34
SQH58261.1|709716_710730_-	DNA-binding/iron metalloprotein/AP endonuclease	NA	A0A0R6PI74	Moraxella_phage	58.0	2.6e-107
SQH58262.1|710909_711125_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
SQH58263.1|711140_711584_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	47.9	1.3e-26
SQH58264.1|711673_713461_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.1	1.2e-73
SQH58265.1|713683_715540_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	32.6	1.1e-34
>prophage 3
LS483441	Aeromonas caviae strain NCTC12244 genome assembly, chromosome: 1	4586140	905873	947853	4586140	integrase,holin,portal,capsid,terminase,tail,head	Vibrio_phage(14.29%)	53	913148:913163	919523:919538
SQH58428.1|905873_907175_-|integrase	integrase	integrase	NA	NA	NA	NA
SQH58429.1|907388_908399_+	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
SQH58430.1|908395_909064_+	nucleotidyl transferase family protein	NA	NA	NA	NA	NA
SQH58431.1|909083_909908_+	molecular chaperone DnaJ	NA	NA	NA	NA	NA
SQH58432.1|909993_911349_-	xanthine/uracil permease family protein	NA	A0A0R6PHV4	Moraxella_phage	37.8	1.0e-66
SQH58433.1|911604_911934_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58434.1|912045_913713_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	27.5	6.6e-39
913148:913163	attL	GGTTCGTCCAGCAGCA	NA	NA	NA	NA
SQH58435.1|913741_914926_-|integrase	putative integrase	integrase	Q8W658	Enterobacteria_phage	39.2	1.8e-70
SQH58436.1|915024_915234_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58437.1|915300_915774_-	single-strand binding protein	NA	R9TR60	Vibrio_phage	75.0	9.3e-47
SQH58438.1|915773_916031_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58439.1|916086_916281_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58440.1|916256_916694_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58441.1|916690_918502_-	DNA (cytosine-5-)-methyltransferase	NA	Q5QF27	Pseudomonas_virus	45.0	3.9e-154
SQH58442.1|918498_920244_-	Lambda phage type II restriction-modification system DNA N-6-adenine-methyltransferase Dam	NA	Q8HA94	Salmonella_phage	50.0	2.6e-54
919523:919538	attR	GGTTCGTCCAGCAGCA	NA	NA	NA	NA
SQH58443.1|920281_920485_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58444.1|921581_922316_+	Uncharacterised protein	NA	X5JB37	Clostridium_phage	29.6	6.1e-05
SQH58445.1|922334_923027_-	transcriptional repressor pyocin R2 PP	NA	B1B6L9	Salmonella_phage	39.2	8.5e-25
SQH58446.1|923134_923353_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58447.1|923372_923882_+	Lambda phage phage regulatory protein CII	NA	NA	NA	NA	NA
SQH58448.1|924221_925295_+	Uncharacterised protein	NA	A0A1I9KG10	Aeromonas_phage	42.8	6.3e-35
SQH58449.1|925294_925957_+	Replication protein P	NA	A0A1I9KFB0	Aeromonas_phage	63.8	2.2e-70
SQH58450.1|925956_926217_+	Uncharacterised protein	NA	A0A1I9KFB1	Aeromonas_phage	53.8	1.9e-14
SQH58451.1|926213_926444_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58452.1|926440_926650_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58453.1|926642_926948_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58454.1|926937_927327_+	Uncharacterised protein	NA	A0A1V0E824	Vibrio_phage	52.3	1.8e-19
SQH58455.1|927430_928240_+	Uncharacterized phage-encoded protein	NA	U5P4K5	Shigella_phage	36.6	2.1e-30
SQH58456.1|928271_928895_+	Uncharacterised protein	NA	A0A1I9KF44	Aeromonas_phage	48.9	5.9e-41
SQH58457.1|928866_929085_+	DNA polymerase III subunit theta	NA	NA	NA	NA	NA
SQH58458.1|929068_929332_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58459.1|929328_930318_+	Protein of uncharacterised function (DUF968)	NA	R9TRM9	Vibrio_phage	31.4	3.2e-33
SQH58460.1|930314_930668_+	Uncharacterised protein	NA	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	57.8	6.3e-24
SQH58461.1|930667_931315_+	antitermination protein Q	NA	NA	NA	NA	NA
SQH58462.1|931684_932248_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58463.1|932884_933784_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58464.1|933876_934185_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58465.1|934360_935257_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58466.1|935286_936561_-	protein UmuC	NA	F1C5A5	Cronobacter_phage	54.9	2.7e-125
SQH58467.1|936563_936980_-	umuD protein	NA	A0A1W6JNS2	Morganella_phage	50.8	4.3e-32
SQH58468.1|937142_937772_+	Uncharacterised ACR, COG2135	NA	C7BGE4	Burkholderia_phage	49.1	1.4e-45
SQH58469.1|939430_939760_+|holin	phage holin	holin	A5X9I3	Aeromonas_virus	52.5	1.0e-20
SQH58470.1|939746_940265_+	phage lysozyme	NA	V5YSX1	Pseudomonas_phage	76.6	3.8e-70
SQH58471.1|940514_940790_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58472.1|940890_941271_+	HNH endonuclease	NA	A0A1V0E8A5	Vibrio_phage	58.1	6.1e-33
SQH58473.1|941366_941852_+|terminase	P27 family phage terminase small subunit	terminase	A0A2D1GNP3	Pseudomonas_phage	59.6	1.5e-47
SQH58474.1|941861_943583_+|terminase	putative terminase large subunit	terminase	U5P0Q5	Shigella_phage	73.8	1.5e-259
SQH58475.1|943576_943765_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58476.1|943764_945018_+|portal	phage portal protein, HK97 family	portal	Q6UAX8	Klebsiella_phage	64.5	6.3e-159
SQH58477.1|945005_945941_+	membrane protein	NA	Q6UAX7	Klebsiella_phage	51.1	3.3e-80
SQH58478.1|946009_947299_+|capsid	phage major capsid protein	capsid	Q6UAX6	Klebsiella_phage	62.7	6.5e-143
SQH58479.1|947365_947539_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH58480.1|947541_947853_+|head,tail	Phage gp6-like head-tail connector protein	head,tail	A0A2H4J8C5	uncultured_Caudovirales_phage	40.4	4.1e-11
>prophage 4
LS483441	Aeromonas caviae strain NCTC12244 genome assembly, chromosome: 1	4586140	1672166	1716456	4586140	integrase,transposase,tRNA	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage(18.18%)	39	1706780:1706828	1716457:1716505
SQH59122.1|1672166_1673372_+|integrase	phage integrase family protein	integrase	Q19US1	Mannheimia_phage	35.3	1.7e-12
SQH59123.1|1673507_1673876_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH59124.1|1673868_1674171_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQH59125.1|1674293_1674899_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH59126.1|1674960_1675380_+	Protein of uncharacterised function (DUF2787)	NA	NA	NA	NA	NA
SQH59127.1|1676124_1676772_+	Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1	NA	I6WB06	Burkholderia_virus	52.5	3.5e-12
SQH59128.1|1676861_1677851_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH59129.1|1677940_1678498_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH59130.1|1678614_1679787_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH59131.1|1680798_1683672_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH59132.1|1683740_1684193_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH59133.1|1684209_1684407_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH59134.1|1684545_1685709_-|integrase	phage integrase family protein	integrase	NA	NA	NA	NA
SQH59135.1|1685797_1686925_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH59136.1|1687112_1687238_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH59137.1|1687357_1688800_-	Uncharacterised protein	NA	A0A1L7N0M1	Ralstonia_phage	31.7	6.8e-08
SQH59138.1|1688960_1689650_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH59139.1|1689662_1690331_-	TM2 domain	NA	NA	NA	NA	NA
SQH59140.1|1690457_1691351_-	Uncharacterised protein	NA	A0A0R6PH67	Moraxella_phage	28.8	2.2e-33
SQH59141.1|1691758_1697071_+	putative DNA helicase	NA	NA	NA	NA	NA
SQH59142.1|1697394_1698144_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH59143.1|1698131_1699865_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH59144.1|1700060_1700636_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH59145.1|1700752_1702252_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH59146.1|1702448_1703231_-	Nuclease-related domain	NA	NA	NA	NA	NA
SQH59147.1|1703623_1704643_-	Filamentation induced by cAMP protein Fic	NA	D7RWK9	Brochothrix_phage	25.2	1.0e-05
SQH59148.1|1705097_1705535_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	39.2	1.6e-13
SQH59149.1|1705738_1706779_+|integrase	integrase catalytic subunit	integrase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	41.8	1.3e-72
1706780:1706828	attL	ACAAGACACCGGTTTGAGGCCGGTGTCAGGTGATAACTAGATCTGTACA	NA	NA	NA	NA
SQH59150.1|1706815_1707394_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
SQH59151.1|1707444_1708173_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	65.3	2.3e-89
SQH59152.1|1708301_1708595_-|transposase	IS3 family transposase	transposase	U5P4I9	Shigella_phage	55.0	6.2e-17
SQH59153.1|1709062_1710046_-	quinone oxidoreductase YhdH/YhfP family	NA	NA	NA	NA	NA
SQH59154.1|1710098_1710734_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SQH59155.1|1710891_1711140_-	putative transglycosylase associated protein	NA	NA	NA	NA	NA
SQH59156.1|1711268_1711994_-	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA	NA
SQH59157.1|1712007_1712694_-	HIT family protein	NA	NA	NA	NA	NA
SQH59158.1|1712683_1713181_-	peptidyl-prolyl cis-trans isomerase B	NA	NA	NA	NA	NA
SQH59159.1|1713372_1714749_+|tRNA	cysteinyl-tRNA synthetase	tRNA	H2EDD6	Moumouvirus	29.7	4.6e-46
SQH59160.1|1715415_1716456_+|integrase	integrase catalytic subunit	integrase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	41.8	1.3e-72
1716457:1716505	attR	ACAAGACACCGGTTTGAGGCCGGTGTCAGGTGATAACTAGATCTGTACA	NA	NA	NA	NA
>prophage 5
LS483441	Aeromonas caviae strain NCTC12244 genome assembly, chromosome: 1	4586140	1924919	1932575	4586140		Mycoplasma_phage(33.33%)	8	NA	NA
SQH59325.1|1924919_1926134_+	cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.3	2.3e-33
SQH59326.1|1926188_1926572_+	scaffold protein	NA	A0A218MKD1	uncultured_virus	79.0	2.8e-54
SQH59327.1|1926587_1926911_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	43.9	1.2e-21
SQH59328.1|1927101_1927620_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
SQH59329.1|1927648_1929496_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.6	1.7e-104
SQH59330.1|1929497_1929836_+	ferredoxin, 2Fe-2S type, ISC system	NA	NA	NA	NA	NA
SQH59331.1|1929993_1931295_+	aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	35.6	1.3e-34
SQH59332.1|1931291_1932575_+	aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	37.4	3.3e-30
