assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900476015.1_50279_C02	LS483442	Streptococcus pyogenes strain NCTC8370 genome assembly, chromosome: 1	1	562788-563082	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type I-C,Type I-U, Type I-U?	GTCTCACCCTTCATGGGTGAGTGGATTGAAAT,GTCTCACCCTTCATGGGTGAGTGGATTGAAAT,GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	4,4,4	4	TypeI-C,TypeI-U,TypeI-U?	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA,NA	NA|132aa|up_9|LS483442.1_550256_550652_+	PRK07758, PRK07758, hypothetical protein; Provisional	NA|188aa|up_8|LS483442.1_551252_551816_+	pfam13238, AAA_18, AAA domain	NA|883aa|up_7|LS483442.1_551817_554466_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|801aa|up_6|LS483442.1_554625_557028_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|LS483442.1_557160_557889_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|LS483442.1_557888_559784_+	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|283aa|up_3|LS483442.1_559788_560637_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|LS483442.1_560638_561313_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|LS483442.1_561309_562335_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|LS483442.1_562345_562639_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|LS483442.1_563241_563952_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|LS483442.1_563964_564588_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|LS483442.1_564630_565737_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|LS483442.1_565824_566565_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_4|LS483442.1_566561_568295_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_5|LS483442.1_568367_569447_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_6|LS483442.1_569460_570177_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_7|LS483442.1_570342_570816_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_8|LS483442.1_570957_571638_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|412aa|down_9|LS483442.1_571911_573147_+	PRK01388, PRK01388, arginine deiminase; Provisional
GCA_900476015.1_50279_C02	LS483442	Streptococcus pyogenes strain NCTC8370 genome assembly, chromosome: 1	3	831478-831578	3	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Orphan	TATAATTAGACTATACCAATTTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|63aa|up_8|LS483442.1_821341_821530_+,NA|262aa|up_6|LS483442.1_822861_823647_-,NA	NA|252aa|up_9|LS483442.1_820365_821121_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|63aa|up_8|LS483442.1_821341_821530_+	NA	NA|205aa|up_7|LS483442.1_822120_822735_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_6|LS483442.1_822861_823647_-	NA	NA|233aa|up_5|LS483442.1_823656_824355_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|124aa|up_4|LS483442.1_824354_824726_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|1037aa|up_3|LS483442.1_824910_828021_+	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|338aa|up_2|LS483442.1_828100_829114_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|501aa|up_1|LS483442.1_829176_830679_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|186aa|up_0|LS483442.1_830896_831454_+	TIGR02227, Inactive_signal_peptidase_IA	NA|605aa|down_0|LS483442.1_831629_833444_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|112aa|down_1|LS483442.1_833639_833975_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|214aa|down_2|LS483442.1_834080_834722_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|210aa|down_3|LS483442.1_834731_835361_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|279aa|down_4|LS483442.1_835376_836213_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|258aa|down_5|LS483442.1_836582_837356_+	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|412aa|down_6|LS483442.1_837724_838960_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|441aa|down_7|LS483442.1_839079_840402_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|773aa|down_8|LS483442.1_840930_843249_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|83aa|down_9|LS483442.1_843612_843861_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCA_900476015.1_50279_C02	LS483442	Streptococcus pyogenes strain NCTC8370 genome assembly, chromosome: 1	4	1025810-1026241	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type II-C,Type II-B,Type II-A	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	6,6,5	6	TypeII-C,TypeII-B,TypeII-A	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA,NA|214aa|down_8|LS483442.1_1036139_1036781_-	NA|550aa|up_9|LS483442.1_1015865_1017515_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|276aa|up_8|LS483442.1_1017650_1018478_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_7|LS483442.1_1018474_1019284_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_6|LS483442.1_1019300_1019792_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_5|LS483442.1_1019810_1020236_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_4|LS483442.1_1020442_1021462_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_3|LS483442.1_1021576_1022014_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|294aa|up_2|LS483442.1_1022199_1023081_-	pfam00746, Gram_pos_anchor, LPXTG cell wall anchor motif	NA|611aa|up_1|LS483442.1_1023333_1025166_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|66aa|up_0|LS483442.1_1025499_1025697_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	csn2|221aa|down_0|LS483442.1_1026343_1027006_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|104aa|down_1|LS483442.1_1026995_1027307_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|LS483442.1_1027333_1028203_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|LS483442.1_1028202_1032309_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|LS483442.1_1032788_1033421_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|LS483442.1_1033420_1034185_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|LS483442.1_1034184_1034937_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|399aa|down_7|LS483442.1_1034946_1036143_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|LS483442.1_1036139_1036781_-	NA	NA|452aa|down_9|LS483442.1_1036914_1038270_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
