The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483443	Aggregatibacter segnis strain NCTC10977 genome assembly, chromosome: 1	2022832	44570	67725	2022832	integrase,head,capsid,tail,portal,protease,terminase	uncultured_Caudovirales_phage(46.15%)	27	53158:53177	68082:68101
SQH63563.1|44570_46586_+	DNA ligase	NA	A0A289ZTZ3	Serratia_phage	49.8	7.7e-143
SQH63564.1|46656_47235_-	Thymidine kinase	NA	A0A076YPF1	Citrobacter_phage	51.6	5.2e-52
SQH63565.1|47234_47468_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH63566.1|47538_48567_-	t(6)A37 threonylcarbamoyladenosine biosynthesis protein	NA	A0A0R6PI74	Moraxella_phage	59.1	7.3e-113
SQH63567.1|48791_49007_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
SQH63568.1|49128_50889_+	DNA primase	NA	A0A1S5RF71	Helicobacter_phage	32.2	1.1e-44
SQH63569.1|50964_52830_+	Sigma-70	NA	A0A2I7SAT0	Vibrio_phage	36.3	3.4e-36
53158:53177	attL	TGTAACCACGATTGTAACCA	NA	NA	NA	NA
SQH63570.1|53231_54428_+|integrase	Prophage CP4-57 integrase	integrase	A0A1V0E8G8	Vibrio_phage	39.7	1.2e-79
SQH63571.1|54592_55639_-	phage/plasmid primase, P4 family, C-terminal domain	NA	Q7M2A8	Enterobacteria_phage	42.6	3.0e-66
SQH63572.1|55650_56379_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH63573.1|56362_56806_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH63574.1|56805_57030_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH63575.1|57022_57373_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH63576.1|57359_57551_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH63577.1|57566_57749_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH63578.1|58539_58851_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH63579.1|58862_59066_-	Predicted transcriptional regulator	NA	NA	NA	NA	NA
SQH63580.1|59210_60167_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH63581.1|60311_60872_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH63582.1|60864_61137_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH63583.1|61418_63038_-|terminase	Phage terminase-like protein, large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	72.8	2.6e-242
SQH63584.1|63094_63463_-|terminase	Phage terminase, small subunit	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	66.1	3.0e-37
SQH63585.1|64054_64369_-	uncharacterized phage protein (possible DNA packaging)	NA	A0A2H4JD08	uncultured_Caudovirales_phage	49.5	2.7e-18
SQH63586.1|64355_64700_-|head,tail	Bacteriophage head-tail adaptor	head,tail	NA	NA	NA	NA
SQH63587.1|64683_65916_-|portal	phage portal protein, HK97 family	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	62.5	2.8e-143
SQH63588.1|65917_66484_-|head,protease	phage prohead protease, HK97 family	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	63.4	1.1e-49
SQH63589.1|66537_67725_-|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	63.3	1.4e-131
68082:68101	attR	TGTAACCACGATTGTAACCA	NA	NA	NA	NA
>prophage 2
LS483443	Aggregatibacter segnis strain NCTC10977 genome assembly, chromosome: 1	2022832	1645779	1735063	2022832	integrase,head,tRNA,capsid,tail,portal,protease,terminase	Mannheimia_phage(22.22%)	87	1676953:1676970	1709395:1709412
SQH65046.1|1645779_1646706_-|protease	FtsH protease regulator HflK	protease	NA	NA	NA	NA
SQH65047.1|1652847_1653921_-	Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
SQH65048.1|1654047_1655331_+	Glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
SQH65049.1|1655401_1657993_-	PII uridylyl-transferase	NA	NA	NA	NA	NA
SQH65050.1|1658059_1658863_-	Methionine aminopeptidase	NA	NA	NA	NA	NA
SQH65051.1|1658998_1659340_+	Iron-sulfur cluster insertion protein erpA	NA	A0A2H4N7M3	Lake_Baikal_phage	49.1	2.9e-26
SQH65052.1|1659296_1659704_+	Uncharacterised protein family (UPF0231)	NA	NA	NA	NA	NA
SQH65053.1|1659734_1662116_+	Murein polymerase	NA	NA	NA	NA	NA
SQH65054.1|1662247_1663939_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
SQH65055.1|1664236_1665832_+	L-lactate permease	NA	NA	NA	NA	NA
SQH65056.1|1665929_1666655_+	Lactate utilization protein A	NA	NA	NA	NA	NA
SQH65057.1|1666661_1668074_+	Lactate utilization protein B	NA	NA	NA	NA	NA
SQH65058.1|1668073_1668781_+	Lactate utilization protein C	NA	NA	NA	NA	NA
SQH65059.1|1668966_1670874_+	Ferrous iron uptake protein	NA	NA	NA	NA	NA
SQH65060.1|1670916_1671438_+	Pathogen-specific membrane antigen	NA	NA	NA	NA	NA
SQH65061.1|1671567_1672986_+	Predicted membrane protein	NA	NA	NA	NA	NA
SQH65062.1|1672988_1674314_+	Macrolide export ATP-binding/permease protein MacB	NA	NA	NA	NA	NA
SQH65063.1|1674300_1675440_+	outer membrane-specific lipoprotein transporter subunit LolE	NA	NA	NA	NA	NA
SQH65064.1|1675441_1676113_+	Lipoprotein-releasing system ATP-binding protein LolD	NA	A0A1M7XV31	Cedratvirus	31.4	9.2e-16
SQH65065.1|1676102_1676609_+	Thiol-disulfide oxidoreductase resA	NA	NA	NA	NA	NA
SQH65066.1|1676605_1676917_+	Cytochrome c553	NA	NA	NA	NA	NA
1676953:1676970	attL	ATAAAAAAACCGCACTTT	NA	NA	NA	NA
SQH65067.1|1682851_1683055_-	lipoprotein	NA	NA	NA	NA	NA
SQH65068.1|1683138_1684071_-	Bifunctional protein BirA	NA	NA	NA	NA	NA
SQH65069.1|1684221_1685688_+	Inosine-5'-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.4	1.2e-97
SQH65070.1|1685894_1687271_+	Xanthine permease XanQ	NA	H9YQ34	environmental_Halophage	45.4	7.9e-22
SQH65071.1|1687426_1688782_+	Putative cryptic C4-dicarboxylate transporter DcuD	NA	NA	NA	NA	NA
SQH65072.1|1688891_1689761_+	Predicted permease, DMT superfamily	NA	NA	NA	NA	NA
SQH65073.1|1689931_1691491_+	GMP synthase [glutamine-hydrolyzing]	NA	NA	NA	NA	NA
SQH65074.1|1691693_1692893_+|integrase	Putative prophage CPS-53 integrase	integrase	G9L697	Escherichia_phage	58.2	5.6e-133
SQH65075.1|1692907_1693477_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65076.1|1693476_1693809_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65077.1|1693870_1694722_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65078.1|1694762_1695101_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65079.1|1695097_1698313_-	Domain of uncharacterised function (DUF1983)	NA	A0A0M3LR06	Mannheimia_phage	63.2	1.3e-06
SQH65080.1|1698352_1699018_-|tail	Phage-related protein, tail component	tail	A0A0M3LQC4	Mannheimia_phage	44.3	7.7e-31
SQH65081.1|1698963_1699776_-	NlpC/P60 family	NA	A0A0M3LP75	Mannheimia_phage	47.8	2.1e-62
SQH65082.1|1699723_1700458_-|tail	phage minor tail protein L	tail	A0A0M3LPR8	Mannheimia_phage	56.4	1.2e-72
SQH65083.1|1700457_1700745_-	Phage-related protein	NA	A0A0P0ZBQ8	Stx2-converting_phage	37.2	2.9e-11
SQH65084.1|1700799_1704126_-|tail	Phage-related minor tail protein	tail	A0A0E3GMH8	Enterobacteria_phage	26.7	1.2e-60
SQH65085.1|1704189_1704387_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65086.1|1704462_1704888_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65087.1|1705070_1705265_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65088.1|1705514_1705922_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65089.1|1705982_1706636_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65090.1|1706639_1706984_-	Protein of uncharacterised function (DUF3168)	NA	NA	NA	NA	NA
SQH65091.1|1706985_1707468_-	phage protein, HK97 gp10 family	NA	A0A220NRP5	Escherichia_phage	31.5	8.9e-13
SQH65092.1|1707460_1707784_-|head,tail	Bacteriophage head-tail adaptor	head,tail	A0A286S2A2	Klebsiella_phage	46.3	5.8e-16
SQH65093.1|1707780_1708101_-|head,tail	Phage gp6-like head-tail connector protein	head,tail	A0A2H4J8C5	uncultured_Caudovirales_phage	37.3	2.2e-07
SQH65094.1|1708150_1709377_-|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	Q8SBH8	Shigella_phage	64.8	3.9e-145
SQH65095.1|1709442_1710045_-|head,protease	phage prohead protease, HK97 family	head,protease	Q8SBH9	Shigella_phage	71.9	5.8e-78
1709395:1709412	attR	ATAAAAAAACCGCACTTT	NA	NA	NA	NA
SQH65096.1|1710037_1711258_-|portal	phage portal protein, HK97 family	portal	A0A1W6JP33	Morganella_phage	60.9	1.2e-143
SQH65097.1|1711254_1711407_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65098.1|1711403_1713110_-|terminase	Phage terminase-like protein, large subunit	terminase	Q8HAD6	Salmonella_phage	71.4	1.9e-243
SQH65099.1|1713106_1713589_-|terminase	Phage terminase, small subunit	terminase	Q8W632	Enterobacteria_phage	44.9	1.4e-29
SQH65100.1|1714317_1714674_-	Protein of uncharacterised function (DUF2570)	NA	NA	NA	NA	NA
SQH65101.1|1714649_1715225_-	Phage-related lysozyme (muraminidase)	NA	A0A0M3LPQ1	Mannheimia_phage	43.0	1.2e-35
SQH65102.1|1715208_1715445_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65103.1|1715595_1716102_-	Phage antitermination protein Q	NA	K7PHU3	Enterobacteria_phage	31.4	3.2e-13
SQH65104.1|1716094_1716457_-	Crossover junction endodeoxyribonuclease rusA	NA	A0A0M3LPZ2	Mannheimia_phage	49.2	6.0e-30
SQH65105.1|1716453_1716747_-	82 prophage-derived uncharacterized protein ybcO	NA	A0A220NQY2	Salmonella_phage	68.1	7.8e-28
SQH65106.1|1716816_1717452_-	Protein of uncharacterised function (DUF1367)	NA	K7PKS6	Enterobacteria_phage	26.9	9.3e-18
SQH65107.1|1717421_1717940_-	phage N-6-adenine-methyltransferase	NA	D0UIL3	Aggregatibacter_phage	82.4	4.5e-79
SQH65108.1|1717936_1718611_-	Replication protein P	NA	D0UIL4	Aggregatibacter_phage	93.8	9.0e-120
SQH65109.1|1718607_1719381_-	Uncharacterised protein	NA	D0UIL5	Aggregatibacter_phage	97.4	3.8e-58
SQH65110.1|1719380_1720145_-	KilA-N domain	NA	Q8W644	Enterobacteria_phage	38.7	5.2e-31
SQH65111.1|1720188_1720485_-	Protein of uncharacterised function (DUF3718)	NA	Q7Y5W3	Haemophilus_phage	99.0	1.2e-47
SQH65112.1|1720505_1720706_-	Uncharacterized protein conserved in bacteria, prophage-related	NA	NA	NA	NA	NA
SQH65113.1|1720826_1721519_+	Peptidase S24-like	NA	Q7Y5W5	Haemophilus_phage	90.9	1.4e-83
SQH65114.1|1721786_1722617_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65115.1|1722609_1722978_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65116.1|1723009_1723498_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65117.1|1723857_1724382_-	Uncharacterised protein	NA	Q7Y5W8	Haemophilus_phage	69.4	1.1e-59
SQH65118.1|1724887_1725355_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65119.1|1725517_1725727_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65120.1|1725973_1726306_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65121.1|1726659_1727028_+	Uncharacterised protein	NA	Q776W5	Haemophilus_phage	41.9	5.9e-09
SQH65122.1|1727020_1727308_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65123.1|1727294_1727459_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65124.1|1727461_1728379_+	Uncharacterised protein	NA	A0A0M3LR66	Mannheimia_phage	47.8	5.8e-61
SQH65125.1|1728391_1729273_+	phage recombination protein Bet	NA	A0A2H4JAQ4	uncultured_Caudovirales_phage	59.4	5.2e-59
SQH65126.1|1729269_1729929_+	putative phage-type endonuclease	NA	A0A0M3LPU0	Mannheimia_phage	74.4	2.9e-83
SQH65127.1|1730102_1730537_+	Predicted acetyltransferase	NA	NA	NA	NA	NA
SQH65128.1|1730734_1730947_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH65129.1|1730952_1731132_+	Predicted transcriptional regulator	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	44.9	5.6e-05
SQH65130.1|1731825_1732779_+	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
SQH65131.1|1732850_1733708_+	Pyridoxamine kinase	NA	NA	NA	NA	NA
SQH65132.1|1733752_1735063_+|tRNA	tRNA(Ile)-lysidine synthase	tRNA	NA	NA	NA	NA
