The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483463	Salmonella enterica subsp. enterica serovar Give strain NCTC5778 genome assembly, chromosome: 1	4638063	115543	123243	4638063	integrase	Morganella_phage(66.67%)	12	111381:111393	123415:123427
111381:111393	attL	GTTGAATTTTGCT	NA	NA	NA	NA
SQI09772.1|115543_117673_-	P4 alpha zinc-binding domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	41.9	2.2e-124
SQI09773.1|117669_117984_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI09774.1|117990_118221_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI09775.1|118213_118423_-	phage-like protein	NA	K7PHG9	Enterobacteria_phage	53.4	1.0e-10
SQI09776.1|118419_118635_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI09777.1|118631_119507_-	Site-specific recombinase XerC	NA	NA	NA	NA	NA
SQI09778.1|119499_119688_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI09779.1|119817_119991_+	Uncharacterised protein	NA	A0A2H4JB52	uncultured_Caudovirales_phage	51.2	1.4e-05
SQI09780.1|120039_120609_-	Putative cytoplasmic protein	NA	A0A1W6JPH8	Morganella_phage	67.7	5.1e-60
SQI09781.1|120653_120854_-	Prophage CP4-57 regulatory protein (AlpA)	NA	NA	NA	NA	NA
SQI09782.1|120948_121890_-	Uncharacterised protein	NA	A0A1W6JPD1	Morganella_phage	48.3	6.4e-07
SQI09783.1|121983_123243_-|integrase	site-specific recombinase, phage integrase family protein	integrase	A0A1W6JPG6	Morganella_phage	78.8	1.5e-197
123415:123427	attR	GTTGAATTTTGCT	NA	NA	NA	NA
>prophage 2
LS483463	Salmonella enterica subsp. enterica serovar Give strain NCTC5778 genome assembly, chromosome: 1	4638063	514557	572102	4638063	protease,transposase,integrase	Staphylococcus_phage(12.5%)	60	570731:570749	573871:573889
SQI10143.1|514557_515628_-|protease	serine endoprotease	protease	NA	NA	NA	NA
SQI10144.1|515720_517088_-|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.3	2.7e-22
SQI10145.1|517244_517643_-	cytochrome d ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
SQI10146.1|517835_518960_+	ATP/GTP-binding protein	NA	NA	NA	NA	NA
SQI10147.1|519261_519690_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
SQI10148.1|519705_520098_+	30S ribosomal subunit protein S9	NA	NA	NA	NA	NA
SQI10149.1|520254_521049_+	Cytoplasmic protein	NA	NA	NA	NA	NA
SQI10150.1|521311_521950_+	stringent starvation protein A	NA	NA	NA	NA	NA
SQI10151.1|521955_522456_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	55.8	2.5e-26
SQI10152.1|522573_523356_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQI10153.1|523490_524384_+	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
SQI10154.1|524499_525990_+	Sialic acid transporter (permease) NanT	NA	Q6JIH2	Burkholderia_virus	21.9	2.7e-07
SQI10155.1|526036_526726_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
SQI10156.1|526722_527598_+	kinase	NA	NA	NA	NA	NA
SQI10157.1|527594_528062_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQI10158.1|528143_529424_-	cytosine deaminase	NA	NA	NA	NA	NA
SQI10159.1|529410_530664_-	cytosine permease	NA	NA	NA	NA	NA
SQI10160.1|530779_531490_-	Uncharacterized conserved protein	NA	A0A0U2BZN7	Salmonella_phage	88.1	1.2e-74
SQI10161.1|531508_531883_-	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQI10162.1|532090_533509_-	glutamate synthase	NA	NA	NA	NA	NA
SQI10163.1|533518_537979_-	glutamate synthase subunit alpha	NA	NA	NA	NA	NA
SQI10164.1|538650_539580_+	putative Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	33.3	2.6e-16
SQI10165.1|539673_542010_+	aerobic respiration control sensor protein ArcB	NA	A0A1V0SGX0	Hokovirus	30.6	6.0e-38
SQI10166.1|542236_542890_+	Enhancing lycopene biosynthesis protein 2	NA	NA	NA	NA	NA
SQI10167.1|542886_543615_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
SQI10168.1|543689_544322_-	PhoP regulatory network protein YrbL	NA	NA	NA	NA	NA
SQI10169.1|544568_544841_-	phosphocarrier protein Hpr	NA	NA	NA	NA	NA
SQI10170.1|544837_545692_-	glmZ(sRNA)-inactivating NTPase	NA	A0A0R8VB27	Thermobifida_phage	28.4	1.4e-05
SQI10171.1|545737_546229_-	nitrogen regulatory IIA protein	NA	NA	NA	NA	NA
SQI10172.1|546346_546634_-	sigma(54) modulation protein	NA	NA	NA	NA	NA
SQI10173.1|546656_548090_-	RNA polymerase sigma-54 factor (sigma-N)	NA	NA	NA	NA	NA
SQI10174.1|548137_548863_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	7.1e-22
SQI10175.1|548869_549424_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
SQI10176.1|549392_549968_-	Uncharacterized protein YrbK clustered with lipopolysaccharide transporters	NA	NA	NA	NA	NA
SQI10177.1|549964_550531_-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	NA	A0A140XBD6	Dickeya_phage	74.3	3.6e-53
SQI10178.1|550551_551538_-	D-arabinose 5-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	31.2	1.1e-38
SQI10179.1|551551_552529_-	Inner membrane protein YrbG predicted calcium/sodium:proton antiporter	NA	NA	NA	NA	NA
SQI10180.1|552741_553554_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.2	9.7e-20
SQI10181.1|553561_554344_+	putative ABC transporter permease component YrbE	NA	NA	NA	NA	NA
SQI10182.1|554348_554900_+	putative ABC transporter periplasmic component YrbD	NA	NA	NA	NA	NA
SQI10183.1|554918_555554_+	putative ABC transporter auxiliary component YrbC	NA	NA	NA	NA	NA
SQI10184.1|555553_555850_+	sulfate transporter	NA	NA	NA	NA	NA
SQI10185.1|555998_556292_+	YrbA protein	NA	NA	NA	NA	NA
SQI10186.1|556345_557605_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQI10187.1|557662_557950_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	68.7	3.5e-17
SQI10188.1|558182_559295_-	octaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	25.8	9.0e-08
SQI10189.1|559411_559723_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
SQI10190.1|559742_560000_+	50S ribosomal subunit protein L27	NA	NA	NA	NA	NA
SQI10191.1|560129_561095_+	Permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA	NA
SQI10192.1|561110_562283_+	GTPase ObgE	NA	NA	NA	NA	NA
SQI10193.1|562413_563847_-	penicillin-binding protein	NA	NA	NA	NA	NA
SQI10194.1|564094_564571_+	transcription elongation factor	NA	NA	NA	NA	NA
SQI10195.1|564726_565059_-	RNA binding protein	NA	NA	NA	NA	NA
SQI10196.1|565146_565773_+	cell division protein	NA	NA	NA	NA	NA
SQI10197.1|565867_567811_+|protease	ATP-dependent metalloprotease	protease	G8DDJ2	Micromonas_pusilla_virus	43.3	9.2e-117
SQI10198.1|567914_568763_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	30.3	1.4e-21
SQI10199.1|568755_570093_+	PGM/PMM family protein	NA	NA	NA	NA	NA
SQI10200.1|570315_570648_+	Protein-export membrane protein secG	NA	NA	NA	NA	NA
570731:570749	attL	GTCCCGTCCTCGGTACCAA	NA	NA	NA	NA
SQI10201.1|570846_571248_+|transposase	ISPsy11, transposase OrfA	transposase	NA	NA	NA	NA
SQI10202.1|571418_572102_+|integrase	integrase	integrase	Q6H9S3	Enterobacteria_phage	34.5	1.2e-18
573871:573889	attR	GTCCCGTCCTCGGTACCAA	NA	NA	NA	NA
>prophage 3
LS483463	Salmonella enterica subsp. enterica serovar Give strain NCTC5778 genome assembly, chromosome: 1	4638063	648591	684698	4638063	plate,capsid,tail,terminase,integrase	Cronobacter_phage(71.43%)	44	642657:642677	690436:690456
642657:642677	attL	GATAAGCGCAGCGCCATCAGG	NA	NA	NA	NA
SQI10272.1|648591_650160_+	Methyl-accepting chemotaxis protein II	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.5	2.2e-12
SQI10273.1|650156_650801_-	transcriptional regulator	NA	NA	NA	NA	NA
SQI10274.1|651035_651803_+	siderophore-interacting protein	NA	NA	NA	NA	NA
SQI10275.1|652012_653050_-|integrase	phage integrase family protein	integrase	F1BUS9	Erwinia_phage	64.7	6.6e-122
SQI10276.1|653053_653620_-	phage protein	NA	Q4ZA70	Staphylococcus_virus	35.0	3.0e-20
SQI10277.1|653636_654218_-	repressor protein	NA	F1BUS8	Erwinia_phage	39.8	2.5e-33
SQI10278.1|654353_654575_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI10279.1|654605_655109_+	phage protein	NA	F1BUN6	Cronobacter_phage	72.5	3.5e-60
SQI10280.1|655118_655346_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI10281.1|655566_655761_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI10282.1|655760_656162_+	Uncharacterised protein	NA	F1BUN2	Cronobacter_phage	66.9	1.1e-48
SQI10283.1|656230_656485_+	Protein of uncharacterised function (DUF2732)	NA	NA	NA	NA	NA
SQI10284.1|656475_657072_+	exonuclease	NA	A0A1S6L012	Salmonella_phage	72.3	3.8e-74
SQI10285.1|657068_657398_+	gp91	NA	Q2P9X4	Enterobacteria_phage	45.2	3.0e-12
SQI10286.1|657387_658248_+	putative phage gene	NA	F1BUN1	Cronobacter_phage	83.5	2.0e-132
SQI10287.1|658244_660266_+	Phage replication protein	NA	F1BUM9	Cronobacter_phage	74.8	1.9e-298
SQI10288.1|660385_660592_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI10289.1|660565_660835_-	zinc-finger protein	NA	F1BUM8	Cronobacter_phage	94.3	5.1e-42
SQI10290.1|660885_661947_-	Membrane protein	NA	F1BUM7	Cronobacter_phage	77.3	3.0e-162
SQI10291.1|661943_663719_-|terminase	Phage terminase ATPase subunit	terminase	F1BUM5	Cronobacter_phage	83.1	1.7e-290
SQI10292.1|663879_664680_+|capsid	putative capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	54.8	3.2e-76
SQI10293.1|664741_665764_+|capsid	Phage major capsid protein	capsid	F1BUM2	Cronobacter_phage	81.2	1.1e-158
SQI10294.1|665767_666469_+|terminase	phage terminase subunit	terminase	F1BUM0	Cronobacter_phage	66.8	9.4e-88
SQI10295.1|666514_667018_+	putative phage gene	NA	F1BUL8	Cronobacter_phage	82.7	1.8e-64
SQI10296.1|667014_667521_+	putative phage gene	NA	F1BUL7	Cronobacter_phage	69.8	5.2e-64
SQI10297.1|667517_668225_+	Phage virion morphogenesis protein	NA	F1BUL6	Cronobacter_phage	76.1	3.4e-101
SQI10298.1|668221_669349_+	Topoisomerase IA	NA	F1BUL5	Cronobacter_phage	83.5	3.3e-175
SQI10299.1|669345_669801_+	phage protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
SQI10300.1|669810_670104_+	Holin	NA	C7BGD7	Burkholderia_phage	46.2	1.3e-14
SQI10301.1|670100_670442_+	hypothetical phage-related protein	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
SQI10302.1|670441_670774_+	putative phage-related protein	NA	F1BUL2	Cronobacter_phage	71.8	6.7e-36
SQI10303.1|670920_671178_+	putative phage gene	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
SQI10304.1|671365_673336_+|tail	Phage-related tail protein	tail	F1BUK9	Cronobacter_phage	69.8	2.1e-270
SQI10305.1|673332_673662_+	phage protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
SQI10306.1|673658_674843_+|plate	Phage baseplate	plate	F1BUK6	Cronobacter_phage	78.4	6.7e-179
SQI10307.1|674835_675423_+|tail	Bacteriophage P2-related tail formation protein	tail	F1BUK5	Cronobacter_phage	81.5	2.1e-88
SQI10308.1|675432_677445_+|tail	phage tail fiber repeat-containing protein	tail	F1BUK3	Cronobacter_phage	81.2	2.1e-148
SQI10309.1|677447_677978_+|tail	phage tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	32.4	4.4e-13
SQI10310.1|677967_678693_+	phage protein	NA	F1BUK1	Cronobacter_phage	56.4	6.6e-68
SQI10311.1|678664_679210_+	phage protein	NA	F1BUJ9	Cronobacter_phage	72.0	1.4e-59
SQI10312.1|679212_680913_+	phage protein	NA	F1BUJ7	Cronobacter_phage	81.3	2.2e-223
SQI10313.1|681501_681663_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI10314.1|682085_682592_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
SQI10315.1|682715_684698_-	RNA polymerase sigma-70 factor	NA	A0A2I7SAT0	Vibrio_phage	33.7	9.0e-35
690436:690456	attR	GATAAGCGCAGCGCCATCAGG	NA	NA	NA	NA
>prophage 4
LS483463	Salmonella enterica subsp. enterica serovar Give strain NCTC5778 genome assembly, chromosome: 1	4638063	1183178	1192976	4638063	integrase,capsid	Enterobacteria_phage(87.5%)	12	1188849:1188864	1195591:1195606
SQI10788.1|1183178_1185512_-	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	83.5	0.0e+00
SQI10789.1|1185526_1185847_-	putative prophage protein	NA	NA	NA	NA	NA
SQI10790.1|1185843_1186104_-	bacteriophage protein	NA	NA	NA	NA	NA
SQI10791.1|1186177_1186627_-	Uncharacterised protein	NA	Q7M298	Enterobacteria_phage	70.5	1.5e-43
SQI10792.1|1186619_1186919_-	prophage derepression protein	NA	Q7M2A0	Enterobacteria_phage	70.7	6.1e-28
SQI10793.1|1187507_1187774_-	prophage regulatory protein	NA	Q7M299	Enterobacteria_phage	78.4	1.1e-33
SQI10794.1|1188321_1189059_+|capsid	bacteriophage capsid protein	capsid	Q7M2A2	Enterobacteria_phage	62.3	1.7e-76
1188849:1188864	attL	GCAGCAGGTGAAAGCG	NA	NA	NA	NA
SQI10795.1|1189055_1189301_+	phage transcriptional activator, Ogr/delta	NA	Q7M294	Enterobacteria_phage	75.3	5.3e-30
SQI10796.1|1189317_1189884_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.7	1.3e-55
SQI10797.1|1190231_1191089_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI10798.1|1191088_1191748_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI10799.1|1191782_1192976_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	49.1	4.1e-107
1195591:1195606	attR	CGCTTTCACCTGCTGC	NA	NA	NA	NA
>prophage 5
LS483463	Salmonella enterica subsp. enterica serovar Give strain NCTC5778 genome assembly, chromosome: 1	4638063	1710462	1719633	4638063	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
SQI11233.1|1710462_1711410_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
SQI11234.1|1711393_1712125_+	putative permease transmembrane component	NA	NA	NA	NA	NA
SQI11235.1|1712105_1712213_-	membrane protein	NA	NA	NA	NA	NA
SQI11236.1|1712272_1713004_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
SQI11237.1|1713226_1714912_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
SQI11238.1|1714908_1715628_+	two-component system response regulator	NA	NA	NA	NA	NA
SQI11239.1|1715674_1716142_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
SQI11240.1|1716198_1716729_-	lipoprotein	NA	NA	NA	NA	NA
SQI11241.1|1716900_1717359_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
SQI11242.1|1717599_1719633_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 6
LS483463	Salmonella enterica subsp. enterica serovar Give strain NCTC5778 genome assembly, chromosome: 1	4638063	1786804	1793101	4638063		Enterobacteria_phage(50.0%)	6	NA	NA
SQI11295.1|1786804_1788208_+	Colanic acid biosynthesis protein wcaM	NA	A0A291LBB9	Klebsiella_phage	28.2	4.0e-21
SQI11296.1|1788385_1789279_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
SQI11297.1|1789655_1790741_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	54.2	4.2e-103
SQI11298.1|1790740_1791640_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
SQI11299.1|1791687_1792566_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	64.1	3.9e-107
SQI11300.1|1792570_1793101_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	57.1	3.7e-52
>prophage 7
LS483463	Salmonella enterica subsp. enterica serovar Give strain NCTC5778 genome assembly, chromosome: 1	4638063	2212138	2219868	4638063	tRNA,transposase,integrase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	7	2217339:2217352	2222096:2222109
SQI11720.1|2212138_2213512_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.0	2.8e-51
SQI11721.1|2213555_2214491_-|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA	A0A0U2S5Z2	Escherichia_phage	97.3	9.4e-144
SQI11722.1|2215166_2216999_+	T3SS secreted effector EspN-like protein	NA	A0A0N7KZG3	Stx2-converting_phage	34.7	2.5e-47
SQI11723.1|2217273_2217612_+	multidrug transporter	NA	NA	NA	NA	NA
2217339:2217352	attL	ATTAAAATTATCGG	NA	NA	NA	NA
SQI11724.1|2217664_2218099_-	Universal stress protein F	NA	A0A1W6JNV4	Morganella_phage	52.1	9.4e-30
SQI11725.1|2218612_2219014_+|transposase	ISPsy11, transposase OrfA	transposase	NA	NA	NA	NA
SQI11726.1|2219184_2219868_+|integrase	integrase	integrase	Q6H9S3	Enterobacteria_phage	34.5	9.0e-19
2222096:2222109	attR	CCGATAATTTTAAT	NA	NA	NA	NA
>prophage 8
LS483463	Salmonella enterica subsp. enterica serovar Give strain NCTC5778 genome assembly, chromosome: 1	4638063	2638207	2646478	4638063	transposase	Escherichia_phage(42.86%)	9	NA	NA
SQI12126.1|2638207_2638447_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
SQI12127.1|2638657_2638822_-|transposase	transposase	transposase	NA	NA	NA	NA
SQI12128.1|2639319_2640129_+	cytolethal distending toxin subunit CdtB	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
SQI12129.1|2640201_2640579_+	Protein of uncharacterised function (DUF1353)	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
SQI12130.1|2640726_2641269_-	Predicted lysozyme (DUF847)	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
SQI12131.1|2641452_2642181_-	Pertussis toxin, subunit 1 subfamily	NA	A0A0U2KD26	Escherichia_phage	52.5	1.6e-61
SQI12132.1|2642197_2642611_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	37.7	3.2e-19
SQI12133.1|2643655_2644780_-	bacteriophage protein	NA	NA	NA	NA	NA
SQI12134.1|2645227_2646478_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
>prophage 9
LS483463	Salmonella enterica subsp. enterica serovar Give strain NCTC5778 genome assembly, chromosome: 1	4638063	3264786	3323865	4638063	protease,tRNA,transposase	Bacillus_phage(25.0%)	51	NA	NA
SQI12706.1|3264786_3265704_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
SQI12707.1|3265700_3266153_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
SQI12708.1|3266153_3266570_-	copper efflux regulator	NA	NA	NA	NA	NA
SQI12709.1|3266679_3269181_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	37.2	6.7e-112
SQI12710.1|3269333_3270161_+	Secreted protein	NA	NA	NA	NA	NA
SQI12711.1|3271242_3271722_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
SQI12712.1|3271838_3273491_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
SQI12713.1|3273663_3274884_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQI12714.1|3274895_3275021_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI12715.1|3275098_3276775_+	transport protein	NA	NA	NA	NA	NA
SQI12716.1|3276823_3278128_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
SQI12717.1|3278280_3279252_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.4	6.6e-15
SQI12718.1|3279248_3280211_-	ferrochelatase	NA	NA	NA	NA	NA
SQI12719.1|3280395_3281040_-	adenylate kinase	NA	NA	NA	NA	NA
SQI12720.1|3281281_3283156_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.9	1.7e-115
SQI12721.1|3283266_3283872_-	recombination protein RecR	NA	NA	NA	NA	NA
SQI12722.1|3283871_3284201_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQI12723.1|3286288_3286840_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
SQI12724.1|3286992_3287370_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
SQI12725.1|3287450_3287966_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
SQI12726.1|3287979_3288147_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI12727.1|3288216_3289140_+|transposase	ISNCY transposase	transposase	Q2A0A7	Sodalis_phage	52.1	1.6e-63
SQI12728.1|3289181_3292544_-	integral membrane protein AefA	NA	NA	NA	NA	NA
SQI12729.1|3292662_3293316_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
SQI12730.1|3293457_3294651_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
SQI12731.1|3294673_3297823_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
SQI12732.1|3298318_3298693_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
SQI12733.1|3298720_3298939_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQI12734.1|3299117_3299669_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQI12735.1|3299786_3300257_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI12736.1|3300454_3300718_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQI12737.1|3300942_3302493_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
SQI12738.1|3302801_3303113_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
SQI12739.1|3303145_3303715_-	lipoprotein	NA	NA	NA	NA	NA
SQI12740.1|3303929_3304790_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQI12741.1|3304889_3306176_-	ammonium transporter	NA	NA	NA	NA	NA
SQI12742.1|3306207_3306546_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQI12743.1|3306758_3308540_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	26.7	3.2e-39
SQI12744.1|3308532_3310305_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.8	4.7e-51
SQI12745.1|3310345_3310804_-	transcriptional regulator	NA	NA	NA	NA	NA
SQI12746.1|3310916_3311972_+	lyase	NA	NA	NA	NA	NA
SQI12747.1|3312021_3312840_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
SQI12748.1|3312940_3314641_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQI12749.1|3314705_3315401_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.9	4.2e-88
SQI12750.1|3315509_3315908_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
SQI12751.1|3316011_3316386_-	competence protein ComEA	NA	NA	NA	NA	NA
SQI12752.1|3316535_3318407_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SQI12753.1|3318697_3318970_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
SQI12754.1|3319178_3321533_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	1.6e-224
SQI12755.1|3321718_3322990_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	5.6e-131
SQI12756.1|3323241_3323865_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
>prophage 10
LS483463	Salmonella enterica subsp. enterica serovar Give strain NCTC5778 genome assembly, chromosome: 1	4638063	4380103	4414967	4638063	holin,portal,plate,capsid,tail,terminase,integrase	Salmonella_phage(62.5%)	45	4379896:4379942	4410342:4410388
4379896:4379942	attL	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
SQI13664.1|4380103_4380511_+	Uncharacterised protein	NA	S4TTB4	Salmonella_phage	100.0	1.6e-71
SQI13665.1|4380561_4380780_-	DNA-binding transcriptional regulator	NA	S4TNZ3	Salmonella_phage	100.0	4.7e-38
SQI13666.1|4380857_4382027_-	phage late control gene D	NA	S4TRX8	Salmonella_phage	99.2	2.8e-209
SQI13667.1|4382023_4382509_-	gp25	NA	S4TUC3	Salmonella_phage	99.4	3.9e-85
SQI13668.1|4382521_4384963_-|tail	phage tail tape measure protein	tail	S4TP64	Salmonella_phage	96.8	0.0e+00
SQI13669.1|4385107_4385443_-|tail	phage tail protein	tail	A0A218M4J8	Erwinia_phage	98.2	5.2e-52
SQI13670.1|4385505_4386024_-|tail	major tail sheath protein FII	tail	S4TNZ0	Salmonella_phage	100.0	6.5e-94
SQI13671.1|4386039_4387227_-|tail	bacteriophage major tail sheath protein FI	tail	Q6K1H0	Salmonella_virus	99.7	3.4e-223
SQI13672.1|4387361_4387910_-	gp20	NA	S4TUB9	Salmonella_phage	99.5	1.7e-100
SQI13673.1|4387922_4390037_-|tail	tail protein	tail	Q6K1H2	Salmonella_virus	76.8	1.9e-237
SQI13674.1|4390047_4390578_-|tail	orf38; p2 I-like tail protein	tail	S4TTA8	Salmonella_phage	100.0	9.2e-104
SQI13675.1|4390570_4391479_-|plate	baseplate assembly protein	plate	S4TNY7	Salmonella_phage	100.0	2.6e-162
SQI13676.1|4391485_4391833_-|plate	baseplate assembly protein	plate	S4TRW8	Salmonella_phage	100.0	2.5e-57
SQI13677.1|4391829_4392471_-|tail	phage tail protein	tail	Q6K1H6	Salmonella_virus	99.1	1.6e-113
SQI13678.1|4392539_4392989_-|tail	tail completion protein S	tail	S4TP59	Salmonella_phage	99.3	4.2e-73
SQI13679.1|4392981_4393449_-|tail	tail fiber protein	tail	S4TTA5	Salmonella_phage	98.7	9.3e-84
SQI13680.1|4393411_4393570_-	Phage outer membrane lipoprotein Rz1	NA	S4TNY4	Salmonella_phage	100.0	2.6e-22
SQI13681.1|4393556_4393970_-	lysozyme	NA	S4TRW3	Salmonella_phage	99.3	9.9e-45
SQI13682.1|4393966_4394464_-	phage lysozyme gene	NA	S4TUB1	Salmonella_phage	98.2	5.8e-92
SQI13683.1|4394450_4394747_-|holin	phage holin protein	holin	Q6K1I2	Salmonella_virus	100.0	5.8e-47
SQI13684.1|4394750_4394939_-|tail	phage tail protein	tail	S4TTA0	Salmonella_phage	100.0	2.6e-29
SQI13685.1|4394953_4395460_-|capsid	capsid completion protein	capsid	S4TNY1	Salmonella_phage	100.0	1.3e-91
SQI13686.1|4395553_4396303_-|terminase	terminase, endonuclease subunit	terminase	Q6K1I5	Salmonella_virus	98.0	9.0e-129
SQI13687.1|4396306_4397374_-|capsid	Phage major capsid protein	capsid	A0A0M4R4W2	Salmonella_phage	99.7	1.2e-198
SQI13688.1|4397450_4398305_-	phage protein V	NA	A0A0M3UL81	Salmonella_phage	100.0	9.9e-148
SQI13689.1|4398470_4400240_+|terminase	Phage terminase ATPase subunit	terminase	S4TT96	Salmonella_phage	98.5	0.0e+00
SQI13690.1|4400239_4401286_+|portal	phage portal pbsx family protein	portal	S4TNX7	Salmonella_phage	99.4	4.4e-190
SQI13691.1|4401633_4402518_-	Site-specific DNA methylase	NA	NA	NA	NA	NA
SQI13692.1|4402587_4404087_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI13693.1|4404441_4406727_-	replication protein	NA	A0A0F7LBQ2	Escherichia_phage	93.1	0.0e+00
SQI13694.1|4406716_4406992_-	gp83	NA	U5N3W1	Enterobacteria_phage	100.0	3.8e-45
SQI13695.1|4406988_4407213_-	C4-type zinc finger protein, DksA/TraR family	NA	S4TRY6	Salmonella_phage	100.0	2.9e-35
SQI13696.1|4407212_4407515_-	11.3 kDa protein in GpA 5'region	NA	U5N0U2	Enterobacteria_phage	98.0	5.0e-46
SQI13697.1|4407514_4407739_-	8.3 kDa protein in GpA 5'region	NA	S4TP68	Salmonella_phage	98.6	3.0e-32
SQI13698.1|4407802_4408303_-	Replication protein (GpB)	NA	M1SV55	Escherichia_phage	100.0	2.6e-92
SQI13699.1|4408299_4408497_-	Uncharacterised protein	NA	S4TNZ7	Salmonella_phage	100.0	7.3e-30
SQI13700.1|4408472_4408745_-	Cox protein	NA	Q1JS36	Enterobacteria_phage	100.0	1.4e-47
SQI13701.1|4408881_4409175_+	phage repressor protein c	NA	Q1JS37	Enterobacteria_phage	100.0	2.7e-49
SQI13702.1|4409244_4410225_+|integrase	Puataive integrase	integrase	S4TP66	Salmonella_phage	100.0	4.7e-186
SQI13703.1|4410410_4410911_-	extracytoplasmic stress protein for protein-mediated toxicities	NA	NA	NA	NA	NA
4410342:4410388	attR	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
SQI13704.1|4411061_4411760_+	two-component response regulatory protein	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
SQI13705.1|4411756_4413130_+	two-component sensor kinase protein	NA	W8CYF6	Bacillus_phage	25.6	7.2e-15
SQI13706.1|4413180_4413576_-	membrane protein	NA	NA	NA	NA	NA
SQI13707.1|4413587_4414277_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA	NA
SQI13708.1|4414346_4414967_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	58.4	7.1e-63
